RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2984
         (228 letters)



>d1ug3a2 a.118.1.14 (A:1438-1564) Eukaryotic initiation factor
          eIF4G {Human (Homo sapiens) [TaxId: 9606]}
          Length = 127

 Score = 36.8 bits (85), Expect = 5e-04
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 38 AKKELQEQLEEQISEGASIKDIVADIREIANKHCIPDQELIVLNMDVV 85
            +EL  QLE+ + EG+S + +   I    ++  I    L+   M  V
Sbjct: 3  PSEELNRQLEKLLKEGSSNQRVFDWIEANLSEQQIVSNTLVRALMTAV 50


>d1eq1a_ a.63.1.1 (A:) Apolipophorin-III {Manduca sexta [TaxId:
           7130]}
          Length = 166

 Score = 26.8 bits (59), Expect = 1.9
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 27  VKLHMAQASQEAKKELQEQLEEQISEGA-SIKDIVADIREIANK 69
                 Q SQ+  KE+   +EE   + A  IK    D  + A +
Sbjct: 111 AVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAYDDFVKHAEE 154


>d1mjia_ d.77.1.1 (A:) Ribosomal protein L5 {Thermus thermophilus
           [TaxId: 274]}
          Length = 180

 Score = 26.4 bits (58), Expect = 2.1
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 57  KDIVADIRE---IANKHCIPDQELIVLNMDVVKATERLLKLSVSILHIHLV 104
           +++  ++       N   +P  E +V+N  + +A E    L  +   + L+
Sbjct: 11  EEVRPELIRRFGYQNVWEVPRLEKVVINQGLGEAKEDARILEKAAQELALI 61


>d1j8ba_ d.222.1.1 (A:) Hypothetical protein HI0442 {Haemophilus
          influenzae [TaxId: 727]}
          Length = 92

 Score = 25.4 bits (56), Expect = 2.5
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 23 LADIVKLHMAQASQEAKKELQEQLEEQISEGAS 55
          L  ++K   AQ  QE  +++QE++ +    G S
Sbjct: 1  LGGLMK--QAQQMQEKMQKMQEEIAQLEVTGES 31


>d1ykhb1 a.252.1.1 (B:2-130) RNA polymerase II holoenzyme component
           SRB7 (MED21) {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 129

 Score = 25.5 bits (56), Expect = 3.7
 Identities = 8/45 (17%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 19  EEKGLADIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADI 63
            E+ L  I  L   +   E + E  E ++++      +  ++ D 
Sbjct: 86  AEEQLRKIDMLQ--KKLVEVEDEKIEAIKKKEKLMRHVDSMIEDF 128


>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein
           AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana)
           [TaxId: 3702]}
          Length = 171

 Score = 25.6 bits (55), Expect = 3.8
 Identities = 8/84 (9%), Positives = 26/84 (30%), Gaps = 3/84 (3%)

Query: 31  MAQASQEAKKELQEQLEEQISEGASIKDIVADI---REIANKHCIPDQELIVLNMDVVKA 87
                 +    L+  + +    G   +  +        I  +      + +V+    +  
Sbjct: 74  RQSNKAKGLHLLEFFVNKCHEIGVGCEAWIKTGDPKDVICQEVKRVRPDFLVVGSRGLGR 133

Query: 88  TERLLKLSVSILHIHLVPIPLLLI 111
            +++   +VS   +     P++ I
Sbjct: 134 FQKVFVGTVSAFCVKHAECPVMTI 157


>d1atla_ d.92.1.9 (A:) Snake venom metalloprotease {Western
           diamonback rattlesnake (Crotalus atrox), atrolysin C
           [TaxId: 8730]}
          Length = 200

 Score = 25.5 bits (55), Expect = 5.1
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 4/50 (8%)

Query: 179 HVEKKYGPRWGNIIVWSSLILGQPL----CIMMYYHDFVITHFGEALLDK 224
           H  K         I+   L  G+        M YY  F+  +  + +L+K
Sbjct: 150 HDGKDCLRGASLCIMRPGLTKGRSYEFSDDSMHYYERFLKQYKPQCILNK 199


>d1krqa_ a.25.1.1 (A:) Non-hem ferritin {Campylobacter jejuni
           [TaxId: 197]}
          Length = 165

 Score = 25.3 bits (55), Expect = 5.1
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 25  DIVKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIREIAN 68
            +V+  +          LQ  + EQ  E A  + IV  I+ I  
Sbjct: 103 TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGE 146


>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium
           tuberculosis [TaxId: 1773]}
          Length = 147

 Score = 24.5 bits (52), Expect = 8.2
 Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 1/86 (1%)

Query: 27  VKLHMAQASQEAKKELQEQLEEQISEGASIKDIVADIRE-IANKHCIPDQELIVLNMDVV 85
            K+       E   + +E+     ++    + IV    + + N       +L+V+    +
Sbjct: 59  YKVTGTAPIYEILHDAKERAHNAGAKNVEERPIVGAPVDALVNLADEEKADLLVVGNVGL 118

Query: 86  KATERLLKLSVSILHIHLVPIPLLLI 111
                 L  SV         + +L++
Sbjct: 119 STIAGRLLGSVPANVSRRAKVDVLIV 144


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.139    0.415 

Gapped
Lambda     K      H
   0.267   0.0572    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 860,440
Number of extensions: 38615
Number of successful extensions: 181
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 19
Length of query: 228
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 146
Effective length of database: 1,281,736
Effective search space: 187133456
Effective search space used: 187133456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.8 bits)