Query psy2985
Match_columns 76
No_of_seqs 107 out of 268
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 22:34:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lim_A Fragaceatoxin C; pore f 19.1 17 0.00057 25.5 -0.8 11 46-56 108-118 (178)
2 1qmy_A Protease, leader protea 17.8 43 0.0015 23.2 1.0 26 32-57 22-47 (167)
3 1pp9_G Ubiquinol-cytochrome C 16.7 1.9E+02 0.0064 17.3 4.0 24 4-27 37-60 (81)
4 1m5a_B Insulin B chain; alpha 15.6 28 0.00095 17.9 -0.3 6 45-50 20-25 (30)
5 3qth_A Uncharacterized protein 15.1 1.6E+02 0.0055 20.0 3.5 23 10-32 129-151 (176)
6 3tgu_G UQCRQ, mitochondrial ub 15.0 2.1E+02 0.0073 17.1 4.0 25 4-28 37-61 (81)
7 2oqm_A Hypothetical protein; s 14.5 1.7E+02 0.0057 20.3 3.5 24 9-32 147-170 (192)
8 2cr8_A MDM4 protein; ZF-ranbp 13.9 7.5 0.00026 22.5 -3.1 12 65-76 19-30 (53)
9 1gwy_A Sticholysin II; cytolys 12.4 28 0.00095 24.4 -1.1 11 46-56 107-117 (175)
10 2c6a_A Ubiquitin-protein ligas 12.0 16 0.00054 20.5 -2.0 12 65-76 21-32 (46)
No 1
>3lim_A Fragaceatoxin C; pore forming toxin, actinoporins; HET: LDA; 1.80A {Actinia fragacea} PDB: 3zwj_A 3zwg_A 1kd6_A 1iaz_A 1tzq_A
Probab=19.07 E-value=17 Score=25.55 Aligned_cols=11 Identities=55% Similarity=1.624 Sum_probs=9.5
Q ss_pred chhhhhhhhcC
Q psy2985 46 DRNFYADWWNA 56 (76)
Q Consensus 46 DR~FY~dWWNa 56 (76)
|.+||+.|||-
T Consensus 108 DyNlYsNW~~V 118 (178)
T 3lim_A 108 DYNWYSNWWNV 118 (178)
T ss_dssp CTTTCCCEEEE
T ss_pred chhhhhheeEE
Confidence 78999999983
No 2
>1qmy_A Protease, leader protease; hydrolase, sulfhydryl proteinase, picornaviral proteinase; 1.9A {Aphthovirus O} SCOP: d.3.1.2 PDB: 1qol_A 2jqf_R 2jqg_R
Probab=17.77 E-value=43 Score=23.22 Aligned_cols=26 Identities=12% Similarity=0.336 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhccCchhhhhhhhcCC
Q psy2985 32 HSLLNLTGEVLHFADRNFYADWWNAD 57 (76)
Q Consensus 32 h~~lN~~AEl~~F~DR~FY~dWWNa~ 57 (76)
.||||.+-.|+|.-|..|++.=-++.
T Consensus 22 ncWLNtilQLfryvdepfFd~~y~sp 47 (167)
T 1qmy_A 22 NAWLNAILQLFRYVEEPFFDWVYSSP 47 (167)
T ss_dssp CHHHHHHHHHHHHHTCCTTHHHHTCS
T ss_pred chHHHHHHHHHHHcCccchhhccCCh
Confidence 48999999999999999987555443
No 3
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=16.70 E-value=1.9e+02 Score=17.32 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=18.0
Q ss_pred cHHHHHHHHHhhhHHHHHHHHHHH
Q psy2985 4 SVRWLAQLTSDLEIPNHLIWLIFF 27 (76)
Q Consensus 4 ~~~~~~e~~lkl~~p~~~~~ll~F 27 (76)
.++++-+.++..++|.++.+++.=
T Consensus 37 ~~RR~~~~~l~v~pPfv~~Y~i~~ 60 (81)
T 1pp9_G 37 VLRRTRACILRVAPPFVAFYLVYT 60 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcceeeehhHHHHHHHHH
Confidence 356777888888888887776643
No 4
>1m5a_B Insulin B chain; alpha helices, beta sheets, 3(10) helices, disulphide bridge hormone-growth factor complex; 1.20A {Sus scrofa} SCOP: g.1.1.1 PDB: 1aph_B 1b18_B 1b19_B 1b2a_B 1b2b_B 1b2c_B 1b2d_B 1b2e_B 1b2f_B 1b2g_B 1bph_B 1cph_B 1dph_B 1b17_B 1mpj_B 1wav_B 1zni_B 2a3g_B 2bn1_B 2bn3_B ...
Probab=15.58 E-value=28 Score=17.90 Aligned_cols=6 Identities=33% Similarity=1.132 Sum_probs=4.8
Q ss_pred Cchhhh
Q psy2985 45 ADRNFY 50 (76)
Q Consensus 45 ~DR~FY 50 (76)
|||.||
T Consensus 20 gdRGF~ 25 (30)
T 1m5a_B 20 GERGFF 25 (30)
T ss_dssp GGGCEE
T ss_pred ccCccc
Confidence 788877
No 5
>3qth_A Uncharacterized protein; DINB/YFIT-like putative metalloenzymes, structural genomics, center for structural genomics, JCSG; HET: MSE; 2.20A {Colwellia psychrerythraea}
Probab=15.14 E-value=1.6e+02 Score=20.01 Aligned_cols=23 Identities=17% Similarity=0.418 Sum_probs=19.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHH
Q psy2985 10 QLTSDLEIPNHLIWLIFFYLFFH 32 (76)
Q Consensus 10 e~~lkl~~p~~~~~ll~Fy~~fh 32 (76)
+-++..++|+.++.+.+-|.|..
T Consensus 129 ~yl~~falPNfyFHvtTAYaILR 151 (176)
T 3qth_A 129 EYMSSFVLPNFFFHISMVYAIAK 151 (176)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccchHHHHHHHHHHHHH
Confidence 45677899999999999999874
No 6
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=15.01 E-value=2.1e+02 Score=17.14 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=19.6
Q ss_pred cHHHHHHHHHhhhHHHHHHHHHHHH
Q psy2985 4 SVRWLAQLTSDLEIPNHLIWLIFFY 28 (76)
Q Consensus 4 ~~~~~~e~~lkl~~p~~~~~ll~Fy 28 (76)
+++++-+.++..++|.++.+++.=.
T Consensus 37 ~~RR~~~q~l~v~pPfi~~Y~i~~W 61 (81)
T 3tgu_G 37 VWRRFSSQVFKVAPPFLGAYLLYSW 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHhhHHHHHHHHHHHH
Confidence 4678889999999999888776533
No 7
>2oqm_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.83A {Shewanella denitrificans} SCOP: a.213.1.3
Probab=14.53 E-value=1.7e+02 Score=20.29 Aligned_cols=24 Identities=17% Similarity=0.272 Sum_probs=20.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHHH
Q psy2985 9 AQLTSDLEIPNHLIWLIFFYLFFH 32 (76)
Q Consensus 9 ~e~~lkl~~p~~~~~ll~Fy~~fh 32 (76)
-+-++..++|+.++.+.+-|+|..
T Consensus 147 ~~yl~~falPNFyFHvtTAYaILR 170 (192)
T 2oqm_A 147 YEFAIEHAIPNLYFHITTAYGILR 170 (192)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHH
Confidence 345778899999999999999875
No 8
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=13.86 E-value=7.5 Score=22.51 Aligned_cols=12 Identities=25% Similarity=0.670 Sum_probs=9.9
Q ss_pred hcChhhhhhhcC
Q psy2985 65 NWNMPIHQWAVR 76 (76)
Q Consensus 65 ~WN~pVH~wl~R 76 (76)
+-|-|.+++|.|
T Consensus 19 k~N~Pl~ryC~r 30 (53)
T 2cr8_A 19 KFNSPSKRYCFR 30 (53)
T ss_dssp CEECSSCCBCTT
T ss_pred ccCCCccchhHH
Confidence 779999988865
No 9
>1gwy_A Sticholysin II; cytolysin, pore-forming toxin, hemolysis, cnidocyst; 1.71A {Stoichactis helianthus} SCOP: b.97.1.1 PDB: 1o71_A 1o72_A* 2ks3_A 2l38_A 2l2b_A 2ks4_A
Probab=12.41 E-value=28 Score=24.35 Aligned_cols=11 Identities=45% Similarity=1.576 Sum_probs=8.8
Q ss_pred chhhhhhhhcC
Q psy2985 46 DRNFYADWWNA 56 (76)
Q Consensus 46 DR~FY~dWWNa 56 (76)
|=+||+.|||-
T Consensus 107 DYNlYsNW~~V 117 (175)
T 1gwy_A 107 DYNWYSNWWDV 117 (175)
T ss_dssp CCSSCCCEEEE
T ss_pred cccchhheeEE
Confidence 56789999984
No 10
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=12.02 E-value=16 Score=20.55 Aligned_cols=12 Identities=25% Similarity=0.362 Sum_probs=9.9
Q ss_pred hcChhhhhhhcC
Q psy2985 65 NWNMPIHQWAVR 76 (76)
Q Consensus 65 ~WN~pVH~wl~R 76 (76)
+-|.|.++++.|
T Consensus 21 ~~N~Pl~r~C~r 32 (46)
T 2c6a_A 21 EMNPPLPSHCNR 32 (46)
T ss_dssp CEECSSCSSCTT
T ss_pred ccCCCccchhhH
Confidence 789999988765
Done!