Query psy2985
Match_columns 76
No_of_seqs 107 out of 268
Neff 4.4
Searched_HMMs 13730
Date Fri Aug 16 22:34:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2985.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2985hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1cvua1 a.93.1.2 (A:74-583) Pr 39.0 5.9 0.00043 29.2 1.7 30 31-60 450-479 (511)
2 d1q4ga1 a.93.1.2 (A:74-584) Pr 24.3 16 0.0011 26.8 1.8 29 31-59 449-477 (511)
3 d2oqma1 a.213.1.3 (A:1-171) Hy 23.6 38 0.0028 21.2 3.5 24 10-33 129-152 (171)
4 d2fiua1 d.58.4.16 (A:1-95) Hyp 22.5 8.2 0.0006 21.8 -0.1 22 41-62 56-77 (95)
5 d1qmya_ d.3.1.2 (A:) FMDV lead 17.9 20 0.0014 23.0 1.0 26 32-57 22-47 (156)
6 d1ppjg_ f.23.13.1 (G:) Ubiquin 15.0 99 0.0072 17.1 4.0 23 4-26 37-59 (75)
7 g1cxp.1 a.93.1.2 (A:,C:) Myelo 14.4 34 0.0025 24.8 1.7 26 31-59 487-512 (570)
8 d1j20a1 c.26.2.1 (A:1-165) Arg 12.6 19 0.0014 19.5 -0.2 14 57-70 151-164 (165)
9 d1iaza_ b.97.1.1 (A:) Equinato 12.0 16 0.0011 23.9 -0.8 12 46-57 105-116 (175)
10 d2cr8a1 g.41.11.1 (A:8-48) MDM 11.4 10 0.00073 19.6 -1.5 21 52-76 3-23 (41)
No 1
>d1cvua1 a.93.1.2 (A:74-583) Prostaglandin H2 synthase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=39.02 E-value=5.9 Score=29.19 Aligned_cols=30 Identities=7% Similarity=0.020 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhccCchhhhhhhhcCCCHH
Q psy2985 31 FHSLLNLTGEVLHFADRNFYADWWNADNTD 60 (76)
Q Consensus 31 fh~~lN~~AEl~~F~DR~FY~dWWNa~~~~ 60 (76)
+.|+.--.+.=++.|||-||++.|+..++.
T Consensus 450 ~~~ii~~qf~r~r~gDRf~~e~~~~p~~ft 479 (511)
T d1cvua1 450 MVELGAPFSLKGLMGNPICSPQYWKPSTFG 479 (511)
T ss_dssp HHHHHHHHHHHHHHTSGGGSTTTSSGGGGT
T ss_pred HHHHHHHHHHHHHhcCCccccCCCCCCCcC
Confidence 445555555667999999999999987774
No 2
>d1q4ga1 a.93.1.2 (A:74-584) Prostaglandin H2 synthase {Sheep (Ovis aries) [TaxId: 9940]}
Probab=24.33 E-value=16 Score=26.76 Aligned_cols=29 Identities=7% Similarity=0.053 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhccCchhhhhhhhcCCCH
Q psy2985 31 FHSLLNLTGEVLHFADRNFYADWWNADNT 59 (76)
Q Consensus 31 fh~~lN~~AEl~~F~DR~FY~dWWNa~~~ 59 (76)
|.|+.--.+.=++.|||-+|++.|+..++
T Consensus 449 ~~~ii~~qf~r~~~gDRf~~e~~~~~~~f 477 (511)
T d1q4ga1 449 MIEMGAPFSLKGLLGNPICSPEYWKASTF 477 (511)
T ss_dssp HHHHHHHHHHHHHHTSGGGSTTTCSGGGG
T ss_pred HHHHHHHHHHHHHhcCCccccCcCCCCCC
Confidence 33444445555689999999999997765
No 3
>d2oqma1 a.213.1.3 (A:1-171) Hypothetical protein Sden0562 {Shewanella denitrificans [TaxId: 192073]}
Probab=23.62 E-value=38 Score=21.18 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHHHHH
Q psy2985 10 QLTSDLEIPNHLIWLIFFYLFFHS 33 (76)
Q Consensus 10 e~~lkl~~p~~~~~ll~Fy~~fh~ 33 (76)
+-++..++|+.++.+.+-|.|...
T Consensus 129 ~yl~~falPNfyFH~ttaY~ILR~ 152 (171)
T d2oqma1 129 EFAIEHAIPNLYFHITTAYGILRH 152 (171)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHHH
Confidence 446678999999999999998753
No 4
>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=22.49 E-value=8.2 Score=21.77 Aligned_cols=22 Identities=18% Similarity=0.307 Sum_probs=18.3
Q ss_pred HhccCchhhhhhhhcCCCHHHH
Q psy2985 41 VLHFADRNFYADWWNADNTDTF 62 (76)
Q Consensus 41 l~~F~DR~FY~dWWNa~~~~~f 62 (76)
+..|.|++=-++||||.++.+-
T Consensus 56 iieFps~e~A~~~~~SpeYq~~ 77 (95)
T d2fiua1 56 VIEFPSVQHAIDCYNSPEYQAA 77 (95)
T ss_dssp EEEESSHHHHHHHHHSHHHHHH
T ss_pred EEEcCCHHHHHHHHCCHHHHHH
Confidence 4589999999999999887653
No 5
>d1qmya_ d.3.1.2 (A:) FMDV leader protease {Foot-and-mouth disease virus [TaxId: 12110]}
Probab=17.91 E-value=20 Score=23.01 Aligned_cols=26 Identities=12% Similarity=0.336 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhccCchhhhhhhhcCC
Q psy2985 32 HSLLNLTGEVLHFADRNFYADWWNAD 57 (76)
Q Consensus 32 h~~lN~~AEl~~F~DR~FY~dWWNa~ 57 (76)
.||||.+-.|+|.-|..|++.=-.+.
T Consensus 22 NcWLN~ilQLfryv~epfFd~~y~sp 47 (156)
T d1qmya_ 22 NAWLNAILQLFRYVEEPFFDWVYSSP 47 (156)
T ss_dssp CHHHHHHHHHHHHHTCCTTHHHHTCS
T ss_pred chHHHHHHHHHHHcCccchhhccCCh
Confidence 48999999999999999987555443
No 6
>d1ppjg_ f.23.13.1 (G:) Ubiquinone-binding protein QP-C of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=14.96 E-value=99 Score=17.06 Aligned_cols=23 Identities=13% Similarity=0.221 Sum_probs=18.7
Q ss_pred cHHHHHHHHHhhhHHHHHHHHHH
Q psy2985 4 SVRWLAQLTSDLEIPNHLIWLIF 26 (76)
Q Consensus 4 ~~~~~~e~~lkl~~p~~~~~ll~ 26 (76)
.++++-+.++..+.|.++.+++.
T Consensus 37 ~~RR~~~~~l~v~PPfi~~Y~iy 59 (75)
T d1ppjg_ 37 VLRRTRACILRVAPPFVAFYLVY 59 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHhceEEcCHHHHHHHHH
Confidence 36788889999999988877765
No 7
>g1cxp.1 a.93.1.2 (A:,C:) Myeloperoxidase {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.44 E-value=34 Score=24.82 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhccCchhhhhhhhcCCCH
Q psy2985 31 FHSLLNLTGEVLHFADRNFYADWWNADNT 59 (76)
Q Consensus 31 fh~~lN~~AEl~~F~DR~FY~dWWNa~~~ 59 (76)
|.|++--.--=+|.|||-||+ |..++
T Consensus 487 f~~ii~~qF~rlr~gDRF~ye---n~~~f 512 (570)
T g1cxp.1 487 LACIIGTQFRKLRDGDRFWWE---NEGVF 512 (570)
T ss_dssp HHHHHHHHHHHHHHTCTTCTT---STTTS
T ss_pred HHHHHHHHHHHHhcCCCCeec---CCCCC
Confidence 345544444556889999998 55544
No 8
>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=12.65 E-value=19 Score=19.47 Aligned_cols=14 Identities=7% Similarity=0.287 Sum_probs=12.0
Q ss_pred CCHHHHHHhcChhh
Q psy2985 57 DNTDTFWRNWNMPI 70 (76)
Q Consensus 57 ~~~~~f~r~WN~pV 70 (76)
+++.+|.++.|+||
T Consensus 151 ~ei~~ya~~~~iPv 164 (165)
T d1j20a1 151 KEMIAYAEAHGIPV 164 (165)
T ss_dssp HHHHHHHHHTTCCC
T ss_pred HHHHHHHHHhCCCC
Confidence 47889999999987
No 9
>d1iaza_ b.97.1.1 (A:) Equinatoxin II (eqtII, tenebrosin C) {European sea anemone (Actinia equina) [TaxId: 6106]}
Probab=12.00 E-value=16 Score=23.95 Aligned_cols=12 Identities=50% Similarity=1.481 Sum_probs=9.8
Q ss_pred chhhhhhhhcCC
Q psy2985 46 DRNFYADWWNAD 57 (76)
Q Consensus 46 DR~FY~dWWNa~ 57 (76)
|=++|+.|||..
T Consensus 105 DYNlYsNW~~V~ 116 (175)
T d1iaza_ 105 DYNWYSNWWNVR 116 (175)
T ss_dssp CTTTCCCEEEEE
T ss_pred chhhhhhheeee
Confidence 668999999953
No 10
>d2cr8a1 g.41.11.1 (A:8-48) MDM4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.38 E-value=10 Score=19.58 Aligned_cols=21 Identities=24% Similarity=0.683 Sum_probs=14.0
Q ss_pred hhhcCCCHHHHHHhcChhhhhhhcC
Q psy2985 52 DWWNADNTDTFWRNWNMPIHQWAVR 76 (76)
Q Consensus 52 dWWNa~~~~~f~r~WN~pVH~wl~R 76 (76)
|-|-++.= ++-|-|++++|.|
T Consensus 3 D~WkC~~C----~~~N~Pl~ryC~r 23 (41)
T d2cr8a1 3 DEWQCTEC----KKFNSPSKRYCFR 23 (41)
T ss_dssp CCEECSSS----CCEECSSCCBCTT
T ss_pred cceecCcc----cccCCcchhHHHH
Confidence 45555543 4678888888765
Done!