RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2985
         (76 letters)



>2xu0_A Erythrocyte membrane protein 1; adhesion, virulence,
           duffy-binding-like-DO; 2.06A {Plasmodium falciparum palo
           alto}
          Length = 487

 Score = 25.9 bits (57), Expect = 1.5
 Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 4/22 (18%)

Query: 46  DRNFYA---DWWNADNTDTFWR 64
             N+     DWW   N +  W+
Sbjct: 246 SGNYAKLREDWWTI-NREQIWK 266


>2yk0_A Erythrocyte membrane protein 1; adhesin, pfemp1; 2.80A {Plasmodium
           falciparum}
          Length = 790

 Score = 25.2 bits (55), Expect = 2.2
 Identities = 6/22 (27%), Positives = 9/22 (40%), Gaps = 4/22 (18%)

Query: 46  DRNFYA---DWWNADNTDTFWR 64
             N+     DWW   N +  W+
Sbjct: 249 SGNYAKLREDWWTI-NREQIWK 269


>1kut_A Phosphoribosylaminoimidazole-succinocarboxamide synthase;
          structural genomics, saicar synthetase, PSI, protein
          structure initiative; 2.20A {Thermotoga maritima} SCOP:
          d.143.1.1
          Length = 230

 Score = 24.9 bits (55), Expect = 2.5
 Identities = 5/21 (23%), Positives = 10/21 (47%), Gaps = 1/21 (4%)

Query: 2  KFSVRWLAQLTSDLEIPNHLI 22
          + +   +  L S+  I  HL+
Sbjct: 45 ETTAILMKYL-SEKGIKTHLV 64


>2etv_A Iron(III) ABC transporter, periplasmic iron-bindi protein,
           putative; periplasmic iron-binding protein, structural
           genomics; HET: MLY; 1.70A {Thermotoga maritima} SCOP:
           c.92.2.4
          Length = 346

 Score = 24.3 bits (52), Expect = 5.4
 Identities = 9/67 (13%), Positives = 19/67 (28%), Gaps = 17/67 (25%)

Query: 17  IPNHLIWLIFFYLFFHS-----LLNL--TGEVLH---FAD-------RNFYADWWNADNT 59
           +    ++ I  Y ++ +     L +    G+VL+   F D          Y         
Sbjct: 262 VXRGXVYGILPYNYYTTNIGTALADAYFIGKVLYPERFTDIDPEEXADEIYEFLLGXRVY 321

Query: 60  DTFWRNW 66
                 +
Sbjct: 322 GEMAEQF 328


>2gqr_A Phosphoribosylaminoimidazole-succinocarboxamide synthase; PURC,
          ADE2, ADE1, nucleotide complex, octahedral magnesium
          coordination; HET: ADP; 2.00A {Escherichia coli} PDB:
          2gqs_A*
          Length = 237

 Score = 24.2 bits (53), Expect = 5.7
 Identities = 5/21 (23%), Positives = 12/21 (57%), Gaps = 1/21 (4%)

Query: 2  KFSVRWLAQLTSDLEIPNHLI 22
          KF+   +++L ++  IP  + 
Sbjct: 52 KFNYFIMSKL-AEAGIPTQME 71


>1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI,
          protein structure initiative, TB structural genomics
          consortium, TBSGC; 2.70A {Mycobacterium tuberculosis}
          SCOP: c.69.1.3
          Length = 304

 Score = 23.7 bits (51), Expect = 6.9
 Identities = 4/20 (20%), Positives = 8/20 (40%)

Query: 49 FYADWWNADNTDTFWRNWNM 68
          FY+DW+         + +  
Sbjct: 79 FYSDWYQPACGKAGCQTYKW 98


>2ft0_A TDP-fucosamine acetyltransferase; GNAT fold acetyltransferase,
           structural genomics, montreal-K bacterial structural
           genomics initiative, BSGI; HET: ACO; 1.66A {Escherichia
           coli} PDB: 2fs5_A*
          Length = 235

 Score = 23.5 bits (50), Expect = 8.1
 Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 2/36 (5%)

Query: 33  SLLNLTGEVLHFADRNFYADWWNADNTDTFWRNWNM 68
           +L  L      FA   F A W+  D +  F+  W  
Sbjct: 106 ALRQLASAA--FAQSRFRAPWYAPDASGRFYAQWIE 139


>2p1g_A Putative xylanase; structural genomics, unknown function, PSI-2,
          protein struct initiative; 1.80A {Bacteroides fragilis}
          Length = 249

 Score = 23.5 bits (50), Expect = 10.0
 Identities = 4/20 (20%), Positives = 8/20 (40%)

Query: 39 GEVLHFADRNFYADWWNADN 58
          G++  +  R  Y   W  + 
Sbjct: 80 GKIDGYTSRLHYISDWINNA 99


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.140    0.533 

Gapped
Lambda     K      H
   0.267   0.0515    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,294,096
Number of extensions: 60592
Number of successful extensions: 247
Number of sequences better than 10.0: 1
Number of HSP's gapped: 247
Number of HSP's successfully gapped: 30
Length of query: 76
Length of database: 6,701,793
Length adjustment: 45
Effective length of query: 31
Effective length of database: 5,445,348
Effective search space: 168805788
Effective search space used: 168805788
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 51 (23.9 bits)