RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2985
         (76 letters)



>d1jjcb1 a.6.1.1 (B:1-38,B:152-190) Domains B1 and B5 of
          PheRS-beta, PheT {Thermus thermophilus [TaxId: 274]}
          Length = 77

 Score = 21.9 bits (46), Expect = 7.3
 Identities = 7/22 (31%), Positives = 9/22 (40%)

Query: 1  MKFSVRWLAQLTSDLEIPNHLI 22
          M+    WL     +LE P  L 
Sbjct: 1  MRVPFSWLKAYVPELESPEVLE 22


>d1iaza_ b.97.1.1 (A:) Equinatoxin II (eqtII, tenebrosin C)
           {European sea anemone (Actinia equina) [TaxId: 6106]}
          Length = 175

 Score = 22.5 bits (48), Expect = 7.4
 Identities = 6/11 (54%), Positives = 9/11 (81%)

Query: 46  DRNFYADWWNA 56
           D N+Y++WWN 
Sbjct: 105 DYNWYSNWWNV 115


>d1dmua_ c.52.1.4 (A:) Restriction endonuclease BglI {Bacillus
          subtilis [TaxId: 1423]}
          Length = 299

 Score = 22.3 bits (47), Expect = 7.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 35 LNLTGEVLHFADRNFYADWWNADNTDTFWRNW 66
          LNL  EV+   +    AD+  A+    FW N+
Sbjct: 35 LNLLNEVISDNEEEIRADYNEANFLHPFWMNY 66


>d2hlya1 d.3.1.19 (A:5-206) Hypothetical protein Atu2299
           {Agrobacterium tumefaciens [TaxId: 358]}
          Length = 202

 Score = 22.2 bits (47), Expect = 9.3
 Identities = 4/28 (14%), Positives = 8/28 (28%), Gaps = 1/28 (3%)

Query: 30  FFHSLLNLTGEVL-HFADRNFYADWWNA 56
           F+ S    T      +  +    D  + 
Sbjct: 136 FYRSEPEATARRFADWHKQAMIGDMASV 163


>d1gwya_ b.97.1.1 (A:) Sticholysin II {Carribean sea anemone
           (Stoichactis helianthus) [TaxId: 6123]}
          Length = 175

 Score = 22.1 bits (47), Expect = 9.5
 Identities = 5/11 (45%), Positives = 9/11 (81%)

Query: 46  DRNFYADWWNA 56
           D N+Y++WW+ 
Sbjct: 107 DYNWYSNWWDV 117


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.140    0.533 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 347,889
Number of extensions: 13229
Number of successful extensions: 83
Number of sequences better than 10.0: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 25
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 47 (22.6 bits)