Query psy2988
Match_columns 184
No_of_seqs 112 out of 1143
Neff 9.5
Searched_HMMs 29240
Date Fri Aug 16 22:38:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2988.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2988hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4grv_A Neurotensin receptor ty 99.9 6.6E-26 2.2E-30 188.1 6.9 93 69-161 402-495 (510)
2 2rh1_A Beta-2-adrenergic recep 99.9 2.2E-22 7.7E-27 166.3 11.3 79 70-156 402-480 (500)
3 3vw7_A Proteinase-activated re 99.9 5.8E-23 2E-27 168.2 7.1 88 68-157 382-469 (484)
4 2ks9_A Substance-P receptor; w 99.9 3.5E-22 1.2E-26 158.2 10.2 134 20-156 191-325 (364)
5 3eml_A Human adenosine A2A rec 99.9 2.6E-22 9E-27 164.2 8.6 87 68-159 387-473 (488)
6 4eiy_A Adenosine receptor A2A/ 99.9 1.6E-22 5.6E-27 163.8 6.2 87 68-159 346-432 (447)
7 3uon_A Human M2 muscarinic ace 99.9 1.9E-21 6.6E-26 158.3 9.7 81 69-156 381-461 (467)
8 3odu_A C-X-C chemokine recepto 99.8 1.4E-21 4.9E-26 160.6 7.9 88 69-156 406-496 (502)
9 4dkl_A MU-type opioid receptor 99.8 2.9E-21 1E-25 157.0 8.8 81 69-153 376-456 (464)
10 3pbl_A D(3) dopamine receptor, 99.8 4.7E-21 1.6E-25 156.7 9.6 81 70-156 395-475 (481)
11 1u19_A Rhodopsin; G protein-co 99.8 3.4E-21 1.2E-25 151.3 7.3 128 21-156 200-327 (349)
12 4ea3_A Fusion protein of nocic 99.8 1.6E-20 5.5E-25 152.5 9.4 132 20-158 284-415 (434)
13 3v2y_A Sphingosine 1-phosphate 99.8 1.1E-20 3.6E-25 157.1 8.4 83 70-157 415-497 (520)
14 4amj_A Beta-1 adrenergic recep 99.8 8.8E-21 3E-25 146.7 7.3 127 22-156 174-304 (315)
15 2lnl_A C-X-C chemokine recepto 99.8 7.9E-21 2.7E-25 146.7 6.9 124 19-153 168-294 (296)
16 3rze_A Histamine H1 receptor, 99.8 2E-20 6.9E-25 151.7 9.1 81 69-156 366-446 (452)
17 2z73_A Rhodopsin; visual pigme 99.8 1.3E-19 4.5E-24 147.5 11.0 128 19-152 194-331 (448)
18 3sn6_R Lysozyme, beta-2 adrene 99.8 6.9E-20 2.4E-24 151.8 9.3 127 22-156 345-494 (514)
19 2koe_A Human cannabinoid recep 99.0 6.2E-11 2.1E-15 64.1 1.8 37 118-154 3-39 (40)
20 2ki9_A Cannabinoid receptor 2; 98.6 5E-09 1.7E-13 54.0 0.4 28 71-98 1-28 (33)
21 2ket_A Cathelicidin-6; antimic 57.9 6.1 0.00021 17.7 1.5 14 141-154 4-17 (27)
22 3arc_M Photosystem II reaction 56.3 18 0.00061 18.1 3.6 23 27-49 8-30 (36)
23 2rdd_B UPF0092 membrane protei 45.3 29 0.00098 17.3 3.5 16 35-50 6-22 (37)
24 2z73_A Rhodopsin; visual pigme 38.1 16 0.00056 28.6 2.3 27 128-154 311-337 (448)
25 2ks9_A Substance-P receptor; w 30.0 74 0.0025 23.7 4.8 11 139-149 312-322 (364)
No 1
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}
Probab=99.92 E-value=6.6e-26 Score=188.13 Aligned_cols=93 Identities=20% Similarity=0.211 Sum_probs=63.7
Q ss_pred hccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhh-chhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHH
Q psy2988 69 RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEI-LDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETF 147 (184)
Q Consensus 69 ~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~ 147 (184)
++++|++||+++|+++|++||+||+++.++..+....... ........+..++.+|+|+|||+||+||+++|++||++|
T Consensus 402 ~~erk~~k~L~iVv~~F~iCWlPf~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~Y~NS~iNPiIY~~~n~~FR~aF 481 (510)
T 4grv_A 402 QALRHGVLVARAVVIAFVVCWLPYHVRRLMFCYISDEQWTTFLFDFYHYFYMLTNALAYASSAINPILYNLVSANFRQVF 481 (510)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 4578999999999999999999999999987765332111 112334566778899999999999999999999999999
Q ss_pred HHHhcccccccCCc
Q psy2988 148 KELFIRGAVQVGRR 161 (184)
Q Consensus 148 ~~~~~~~~~~~~~~ 161 (184)
+++|+|.+++.+++
T Consensus 482 k~iL~C~C~~~r~R 495 (510)
T 4grv_A 482 LSTLACLCPGWRHR 495 (510)
T ss_dssp --------------
T ss_pred HHHHhhcCCCCCCC
Confidence 99998755443333
No 2
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*
Probab=99.88 E-value=2.2e-22 Score=166.32 Aligned_cols=79 Identities=27% Similarity=0.394 Sum_probs=65.4
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHH
Q psy2988 70 DSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKE 149 (184)
Q Consensus 70 ~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~ 149 (184)
+++|+++++++++++|++||+||+++.++..+... .....+..+..+|+++||++||+||++ +++||+++++
T Consensus 402 ~e~ka~ktl~ivv~~F~icWlP~~i~~l~~~~~~~-------~~~~~~~~~~~~L~y~NS~iNPiIY~~-n~~FR~af~~ 473 (500)
T 2rh1_A 402 KEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDN-------LIRKEVYILLNWIGYVNSGFNPLIYCR-SPDFRIAFQE 473 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTT-------SSCHHHHHHHHHHHHHGGGTHHHHGGG-SHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------cccHHHHHHHHHHHHHHHhhcchhhhc-cHHHHHHHHH
Confidence 67899999999999999999999999988766521 123456677889999999999999996 9999999999
Q ss_pred Hhccccc
Q psy2988 150 LFIRGAV 156 (184)
Q Consensus 150 ~~~~~~~ 156 (184)
+++|.++
T Consensus 474 il~~~~~ 480 (500)
T 2rh1_A 474 LLCLRRS 480 (500)
T ss_dssp HTTC---
T ss_pred HHhhhcc
Confidence 9977554
No 3
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}
Probab=99.87 E-value=5.8e-23 Score=168.18 Aligned_cols=88 Identities=18% Similarity=0.120 Sum_probs=60.5
Q ss_pred hhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHH
Q psy2988 68 LRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETF 147 (184)
Q Consensus 68 ~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~ 147 (184)
.++++|+++|+++++++|++||+||+++.++..+..... ........+..++.+|+++||++||+||++++++||+++
T Consensus 382 ~~~~~r~~k~l~~v~~~F~icwlP~~i~~l~~~~~~~~~--~~~~~~~~~~~~~~~L~~~ns~iNPiIY~~~~~~fR~~~ 459 (484)
T 3vw7_A 382 RSKKSRALFLSAAVFCIFIICFGPTNVLLIAHYSFLSHT--STTEAAYFAYLLCVCVSSISCCIDPLIYYYASSECQRYV 459 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTCTTC--TTSHHHHHHHHHHHHHHTTHHHHHHHHHHHTSSCC----
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccc--cchhHHHHHHHHHHHHHHhccccchHHHHHhhHHHHHHH
Confidence 355689999999999999999999999998876542211 223344566778899999999999999999999999999
Q ss_pred HHHhcccccc
Q psy2988 148 KELFIRGAVQ 157 (184)
Q Consensus 148 ~~~~~~~~~~ 157 (184)
+++++|.+..
T Consensus 460 ~~ll~~~~~~ 469 (484)
T 3vw7_A 460 YSILCCKESS 469 (484)
T ss_dssp ----------
T ss_pred HHHHhhccCC
Confidence 9999876543
No 4
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=99.87 E-value=3.5e-22 Score=158.18 Aligned_cols=134 Identities=17% Similarity=0.210 Sum_probs=100.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHH
Q psy2988 20 FYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRD-KLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTIL 98 (184)
Q Consensus 20 ~~~~~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~ 98 (184)
.....|.+...++.+++|++++.++|..|.+..++ +......++..++.++++|+++++++++++|++||+|+++..++
T Consensus 191 ~~~~~~~~~~~~~~~~lp~~ii~~~y~~i~~~l~~~~~~~~~~~~~~~~~~~~~k~~~~~~~v~~~f~~~~~P~~i~~~~ 270 (364)
T 2ks9_A 191 IYEKVYHICVTVLIYFLPLLVIGYAYTVVGITLWASEIPGDSSDRYHEQVSAKRKVVKMMIVVVCTFAICWLPFHIFFLL 270 (364)
T ss_dssp TTHHHHHHHHHHHHTHHHHHHHHHHHHHHHHSSCSCCCSSSSSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhhhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888899999999999999999943332 22222222222334667899999999999999999999999888
Q ss_pred HHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccccc
Q psy2988 99 HVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAV 156 (184)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~ 156 (184)
..+..... .......+..+..+++++||++||+||++++++||++++++++|+++
T Consensus 271 ~~~~~~~~---~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fR~~~~~~~~~~~~ 325 (364)
T 2ks9_A 271 PYINPDLY---LKKFIQQVYLAIMWLAMSSTMYNPIIYCCLNDRFRLGFKHAFRCCPF 325 (364)
T ss_dssp HHHSTTSC---SSSCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHSSSCC
T ss_pred HHhCcccc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhcCC
Confidence 66543211 11223345566778999999999999999999999999999977553
No 5
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Probab=99.87 E-value=2.6e-22 Score=164.16 Aligned_cols=87 Identities=20% Similarity=0.301 Sum_probs=71.8
Q ss_pred hhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHH
Q psy2988 68 LRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETF 147 (184)
Q Consensus 68 ~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~ 147 (184)
.++++|+++|+++++++|++||+|++++.++..+.... ......+..++.+|+++|+++||+||++++++||+++
T Consensus 387 ~~~~~r~~~~l~~iv~~F~icw~P~~i~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~ 461 (488)
T 3eml_A 387 LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-----SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTF 461 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccCcc-----ccccHHHHHHHHHHHHHHhhhchhhhhhcCHHHHHHH
Confidence 36788999999999999999999999999887765321 1223455667888999999999999999999999999
Q ss_pred HHHhcccccccC
Q psy2988 148 KELFIRGAVQVG 159 (184)
Q Consensus 148 ~~~~~~~~~~~~ 159 (184)
++++++..++..
T Consensus 462 ~~l~~~~~~~~~ 473 (488)
T 3eml_A 462 RKIIRSHVLRQQ 473 (488)
T ss_dssp HHHHHHTTSCC-
T ss_pred HHHHhhcccccC
Confidence 999988664443
No 6
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Probab=99.86 E-value=1.6e-22 Score=163.83 Aligned_cols=87 Identities=20% Similarity=0.301 Sum_probs=70.2
Q ss_pred hhccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHH
Q psy2988 68 LRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETF 147 (184)
Q Consensus 68 ~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~ 147 (184)
.++++|+++++++++++|++||+|++++.++..+.... ......+..++.+++++||++||+||++++++||+++
T Consensus 346 ~~~~~r~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~ 420 (447)
T 4eiy_A 346 LQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDC-----SHAPLWLMYLAIVLSHTNSVVNPFIYAYRIREFRQTF 420 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhheeccHHHHHHHHHHhcCcc-----cccchHHHHHHHHHHHHHhccchhhhHhccHHHHHHH
Confidence 46788999999999999999999999998887665321 1223456678889999999999999999999999999
Q ss_pred HHHhcccccccC
Q psy2988 148 KELFIRGAVQVG 159 (184)
Q Consensus 148 ~~~~~~~~~~~~ 159 (184)
++++++..++..
T Consensus 421 ~~~~~~~~~r~~ 432 (447)
T 4eiy_A 421 RKIIRSHVLRQQ 432 (447)
T ss_dssp HHHHHHTC----
T ss_pred HHHHHHHHhccC
Confidence 999987664433
No 7
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Probab=99.85 E-value=1.9e-21 Score=158.32 Aligned_cols=81 Identities=17% Similarity=0.298 Sum_probs=66.7
Q ss_pred hccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHH
Q psy2988 69 RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFK 148 (184)
Q Consensus 69 ~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~ 148 (184)
++++|+++++++++++|++||+|+.++.++..+... .....+..+..+|+++|+++||+||++++++||++++
T Consensus 381 ~~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~-------~~~~~~~~i~~~L~~~ns~~NPiIY~~~~~~fR~~~~ 453 (467)
T 3uon_A 381 SREKKVTRTILAILLAFIITWAPYNVMVLINTFCAP-------CIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFK 453 (467)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST-------TSCHHHHHHHHHHHHHTTTHHHHHHHHHCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc-------ccchHHHHHHHHHHHHhhhhhhHHHHHcCHHHHHHHH
Confidence 467899999999999999999999999988765521 1234566778889999999999999999999999999
Q ss_pred HHhccccc
Q psy2988 149 ELFIRGAV 156 (184)
Q Consensus 149 ~~~~~~~~ 156 (184)
++++|.++
T Consensus 454 ~ll~c~~~ 461 (467)
T 3uon_A 454 HLLMCHYK 461 (467)
T ss_dssp HHCC----
T ss_pred HHHhhhcc
Confidence 99977654
No 8
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Probab=99.85 E-value=1.4e-21 Score=160.56 Aligned_cols=88 Identities=8% Similarity=0.091 Sum_probs=70.8
Q ss_pred hccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhh---chhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHH
Q psy2988 69 RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEI---LDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRE 145 (184)
Q Consensus 69 ~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~ 145 (184)
++++|+++++++++++|++||+||+++.++..+....... ........+..++.+|+++||++||+||++++++||+
T Consensus 406 ~~~~k~~k~l~~vv~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~ 485 (502)
T 3odu_A 406 HQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHKWISITEALAFFHCCLNPILYAFLGAKFKT 485 (502)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTTTCCCCC
T ss_pred HhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHhcccchhhhhhcCHHHHH
Confidence 4578999999999999999999999998887654221111 1133345556688899999999999999999999999
Q ss_pred HHHHHhccccc
Q psy2988 146 TFKELFIRGAV 156 (184)
Q Consensus 146 ~~~~~~~~~~~ 156 (184)
+++++++++++
T Consensus 486 ~~~~ll~~~~~ 496 (502)
T 3odu_A 486 SAQHALTSGRP 496 (502)
T ss_dssp CHHHHHSSCSS
T ss_pred HHHHHhccCCc
Confidence 99999987653
No 9
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*
Probab=99.84 E-value=2.9e-21 Score=157.00 Aligned_cols=81 Identities=22% Similarity=0.331 Sum_probs=67.0
Q ss_pred hccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHH
Q psy2988 69 RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFK 148 (184)
Q Consensus 69 ~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~ 148 (184)
++++|+++++++++++|++||+|++++.++..+... ........+..++.+|+++||++||+||++++++||++++
T Consensus 376 ~~~~r~~k~l~~v~~~F~icw~P~~i~~l~~~~~~~----~~~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~ 451 (464)
T 4dkl_A 376 RNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALITI----PETTFQTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFR 451 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcC----CccccchhHHHHHHHHHHhhhchhHHHHHHhhHHHHHHHH
Confidence 556799999999999999999999999888765532 2233345566778889999999999999999999999999
Q ss_pred HHhcc
Q psy2988 149 ELFIR 153 (184)
Q Consensus 149 ~~~~~ 153 (184)
+++++
T Consensus 452 ~lc~~ 456 (464)
T 4dkl_A 452 EFCIP 456 (464)
T ss_dssp HHHC-
T ss_pred HHhcc
Confidence 98654
No 10
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}
Probab=99.84 E-value=4.7e-21 Score=156.72 Aligned_cols=81 Identities=20% Similarity=0.335 Sum_probs=66.9
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHH
Q psy2988 70 DSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKE 149 (184)
Q Consensus 70 ~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~ 149 (184)
+++|+++|+++++++|++||+|++++.++..+... ......+..++.+|+++|+++||+||++++++||+++++
T Consensus 395 ~~~k~~k~l~~iv~~F~icw~P~~i~~~~~~~~~~------~~~~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~~ 468 (481)
T 3pbl_A 395 REKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQT------CHVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLK 468 (481)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSS------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhhHHHHHHHHHhcccc------ccCcHHHHHHHHHHHHHhhccchHHHHHcCHHHHHHHHH
Confidence 57899999999999999999999999888665421 122345666788899999999999999999999999999
Q ss_pred Hhccccc
Q psy2988 150 LFIRGAV 156 (184)
Q Consensus 150 ~~~~~~~ 156 (184)
+++|+++
T Consensus 469 ll~c~~~ 475 (481)
T 3pbl_A 469 ILSCGRP 475 (481)
T ss_dssp HHCC---
T ss_pred HHhccCc
Confidence 9987653
No 11
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...
Probab=99.83 E-value=3.4e-21 Score=151.27 Aligned_cols=128 Identities=18% Similarity=0.229 Sum_probs=96.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHHH
Q psy2988 21 YFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHV 100 (184)
Q Consensus 21 ~~~~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~ 100 (184)
....|.+...++.+++|+++++++|.+|.+..+++..... ++.++.++++|+++++++++++|++||+|+++..++..
T Consensus 200 ~~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~i~~~f~i~~~P~~i~~~~~~ 277 (349)
T 1u19_A 200 NNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ--ESATTQKAEKEVTRMVIIMVIAFLICWLPYAGVAFYIF 277 (349)
T ss_dssp THHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc--cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhe
Confidence 4567888888888999999999999999943322221111 11223356778999999999999999999999987765
Q ss_pred hhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccccc
Q psy2988 101 ISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAV 156 (184)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~ 156 (184)
..... .....+..+..+++++||++||+||++++++||++++++++|.+.
T Consensus 278 ~~~~~------~~~~~~~~~~~~l~~~ns~~nPiiY~~~~~~fR~~~~~~~~c~~~ 327 (349)
T 1u19_A 278 THQGS------DFGPIFMTIPAFFAKTSAVYNPVIYIMMNKQFRNCMVTTLCCGKN 327 (349)
T ss_dssp HTTTS------CCCHHHHHHHHHHGGGGGTHHHHHHHHTCHHHHHHHHHHHTSSCC
T ss_pred ecCCc------ccchHHHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHHhcccCC
Confidence 44221 112334567778899999999999999999999999999977543
No 12
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR network, structural genomics, GPCR membrane 7TM NOP ORL1 cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo sapiens}
Probab=99.83 E-value=1.6e-20 Score=152.54 Aligned_cols=132 Identities=17% Similarity=0.245 Sum_probs=94.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHHH
Q psy2988 20 FYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILH 99 (184)
Q Consensus 20 ~~~~~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~ 99 (184)
.....|.+...++.+++|+++++++|.+|.+..++....... .++.++++|+++++++++++|++||+|+.++.++.
T Consensus 284 ~~~~~~~~~~~~~~~~ip~~ii~~~y~~I~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~vv~~F~i~w~P~~i~~~~~ 360 (434)
T 4ea3_A 284 YWGPVFAICIFLFSFIVPVLVISVCYSLMIRRLRGVRLLSGS---REKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQ 360 (434)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCSSCSSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc---hhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445678888889999999999999999999554443222111 12335678899999999999999999999998876
Q ss_pred HhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccccccc
Q psy2988 100 VISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQV 158 (184)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~~~ 158 (184)
.+... ........+..++.+++++||++||+||++++++||++++++++++..++
T Consensus 361 ~~~~~----~~~~~~~~~~~~~~~l~~~ns~lNPiIY~~~~~~fR~~~~~~~~~~~~~~ 415 (434)
T 4ea3_A 361 GLGVQ----PSSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALGR 415 (434)
T ss_dssp HTTCC----CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHC----------
T ss_pred HhccC----CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCC
Confidence 54421 12233445566777889999999999999999999999999987655433
No 13
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*
Probab=99.82 E-value=1.1e-20 Score=157.09 Aligned_cols=83 Identities=18% Similarity=0.192 Sum_probs=65.6
Q ss_pred ccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHH
Q psy2988 70 DSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKE 149 (184)
Q Consensus 70 ~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~ 149 (184)
+++|+++|+++++++|++||+||+++.++..+....... ......++.+++++||++||+||++++++||+++++
T Consensus 415 ~~~k~~~~~~~vv~~F~vcw~P~~i~~~~~~~~~~~~~~-----~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~ 489 (520)
T 3v2y_A 415 ENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCD-----ILFRAEYFLVLAVLNSGTNPIIYTLTNKEMRRAFIR 489 (520)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTTCS-----TTTSCHHHHHHHHHGGGTHHHHHHHHCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 578899999999999999999999999887655321111 112233556789999999999999999999999999
Q ss_pred Hhcccccc
Q psy2988 150 LFIRGAVQ 157 (184)
Q Consensus 150 ~~~~~~~~ 157 (184)
++++....
T Consensus 490 ~~~~~~~~ 497 (520)
T 3v2y_A 490 IMGRPLEV 497 (520)
T ss_dssp TCCSCC--
T ss_pred HHHHhccc
Confidence 99876543
No 14
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*
Probab=99.82 E-value=8.8e-21 Score=146.67 Aligned_cols=127 Identities=21% Similarity=0.329 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-cc---hhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHH
Q psy2988 22 FTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFK-EN---KKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTI 97 (184)
Q Consensus 22 ~~~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~ 97 (184)
...|.....++.+++|+++++++|.+|.+..+++..+ .. ++.++...++++|+++++++++++|++||+|+++..+
T Consensus 174 ~~~~~~~~~~~~~~ip~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~f~i~~~P~~i~~~ 253 (315)
T 4amj_A 174 NRAYAIASSIISFYIPLLIMIFVALRVYREAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNI 253 (315)
T ss_dssp CHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568888888889999999999999999433332211 11 1112223356789999999999999999999999988
Q ss_pred HHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccccc
Q psy2988 98 LHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAV 156 (184)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~ 156 (184)
+..+.... ....+..+..+++++||++||+||+ ++++||++++++++|.+.
T Consensus 254 ~~~~~~~~-------~~~~~~~~~~~l~~~ns~~nPiiY~-~~~~fR~~~~~~l~~~~~ 304 (315)
T 4amj_A 254 VNVFNRDL-------VPDWLFVAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLLAFPRK 304 (315)
T ss_dssp HHHHCTTS-------SCHHHHHHHHHHHHHGGGTHHHHGG-GSHHHHHHHHHHHC----
T ss_pred HHHhcCcc-------chHHHHHHHHHHHHHhccccHHHHc-CcHHHHHHHHHHhCCCCc
Confidence 86654211 1233455677889999999999999 999999999999987553
No 15
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}
Probab=99.82 E-value=7.9e-21 Score=146.74 Aligned_cols=124 Identities=13% Similarity=0.137 Sum_probs=96.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhhHhhhhhccccchhhHHHHHHHHHHHhHHHHHHHHH
Q psy2988 19 DFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTIL 98 (184)
Q Consensus 19 ~~~~~~y~~~~~~~~~~iP~~ii~~~y~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~F~icw~P~~i~~~~ 98 (184)
......|.+....+.+++|+.++.++|.++.+..+++ +.++++|+++++..++++|++||+|+++..++
T Consensus 168 ~~~~~~~~~~~~~~~~~~p~~i~~~~y~~i~~~~~~~-----------~~~~~~k~~~~~~~v~~~f~icw~P~~i~~~~ 236 (296)
T 2lnl_A 168 AKWRMVLRILPHTFGFIVPLFVMLFCYGFTLRTLFKA-----------HMGQKHRAMRVIFAVVLIFLLCWLPYNLVLLA 236 (296)
T ss_dssp TTTTTHHHHTTTHHHHHHHHHHHHHHHHHHTTTSSSC-----------CCHHHHTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------hhhhhhhHHHHHHHhhhheeeeehHHHHHHHH
Confidence 3445578888888899999999999999887433221 11336789999999999999999999999988
Q ss_pred HHhhccchhhch---hhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhcc
Q psy2988 99 HVISSSVTEILD---YDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIR 153 (184)
Q Consensus 99 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~ 153 (184)
..+......... .........++.+++++||++||+||++++++||++++++++|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~ll~c 294 (296)
T 2lnl_A 237 DTLMRTQVIQESCERRNNIGRALDATEILGFLHSCLNPIIYAFIGQNFRHGFLKILAM 294 (296)
T ss_dssp HHHTCSSSCSCHHHHHHHTTHHHHHHHHHGGGGGTHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred HHHhccccCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhcC
Confidence 776543222221 2223355667888999999999999999999999999999976
No 16
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Probab=99.82 E-value=2e-20 Score=151.73 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=65.8
Q ss_pred hccccchhhHHHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHH
Q psy2988 69 RDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFK 148 (184)
Q Consensus 69 ~~~~~~~~~l~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~ 148 (184)
++++|+++++++++++|++||+|++++.++..+..... ...+..++.+|+++|+++||+||++++++||++++
T Consensus 366 ~~~~k~~k~l~~vv~~f~icwlP~~i~~l~~~~~~~~~-------~~~~~~~~~~L~~~ns~~NPiIY~~~~~~fR~~~~ 438 (452)
T 3rze_A 366 NRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCC-------NEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFK 438 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS-------CTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcccc-------cHHHHHHHHHHHHHHhcccchhhhhccHHHHHHHH
Confidence 36789999999999999999999999988876653211 12234477889999999999999999999999999
Q ss_pred HHhccccc
Q psy2988 149 ELFIRGAV 156 (184)
Q Consensus 149 ~~~~~~~~ 156 (184)
++++|.+.
T Consensus 439 ~ll~~~~~ 446 (452)
T 3rze_A 439 RILHIRSG 446 (452)
T ss_dssp HHHTC---
T ss_pred HHHHhccc
Confidence 99987653
No 17
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=99.81 E-value=1.3e-19 Score=147.45 Aligned_cols=128 Identities=18% Similarity=0.132 Sum_probs=94.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhhh--h-------cchhhHhhhhhccccchhhHHHHHHHHHHH
Q psy2988 19 DFYFTAYYTFRVLFVHTGPCISLVVRNLLFW-QHKRDKLF--K-------ENKKSECKRLRDSNCTTLMLIVVVTVFLLV 88 (184)
Q Consensus 19 ~~~~~~y~~~~~~~~~~iP~~ii~~~y~~i~-~~~~~~~~--~-------~~~~~~~~~~~~~~~~~~~l~~i~~~F~ic 88 (184)
+.....|.++..++.+++|+++++++|..|+ ..+++++. . ...++..++.++++|+++++++++++|++|
T Consensus 194 ~~~~~~~~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~iv~~F~i~ 273 (448)
T 2z73_A 194 DSTTRSNILCMFILGFFGPILIIFFCYFNIVMSVSNHEKEMAAMAKRLNAKELRKAQAGANAEMRLAKISIVIVSQFLLS 273 (448)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTHHHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhhccccHHHHHHHHHHHHHHHHHHH
Confidence 4455678888888889999999999999999 22222111 0 011111223356789999999999999999
Q ss_pred hHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhc
Q psy2988 89 EIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFI 152 (184)
Q Consensus 89 w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~ 152 (184)
|+|++++.++..+.... .....+..+..+++++|+++||+||++++++||++++++++
T Consensus 274 ~~P~~i~~~~~~~~~~~------~~~~~~~~~~~~l~~~ns~~NPiIY~~~~~~fR~~~~~~~~ 331 (448)
T 2z73_A 274 WSPYAVVALLAQFGPLE------WVTPYAAQLPVMFAKASAIHNPMIYSVSHPKFREAISQTFP 331 (448)
T ss_dssp HHHHHHHHHHHHHSCGG------GCCHHHHHHHHHHHHHGGGSHHHHHHHHCHHHHHHHHHHCG
T ss_pred hHHHHHHHHHHHhCCcc------cCChHHHHHHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHH
Confidence 99999998886654211 11234455677889999999999999999999999999985
No 18
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*
Probab=99.80 E-value=6.9e-20 Score=151.80 Aligned_cols=127 Identities=24% Similarity=0.276 Sum_probs=90.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhh--hcc--------------------hhhHhhhhhccccchhhH
Q psy2988 22 FTAYYTFRVLFVHTGPCISLVVRNLLFWQ-HKRDKLF--KEN--------------------KKSECKRLRDSNCTTLML 78 (184)
Q Consensus 22 ~~~y~~~~~~~~~~iP~~ii~~~y~~i~~-~~~~~~~--~~~--------------------~~~~~~~~~~~~~~~~~l 78 (184)
...|.+...++.+++|+++++++|.+|++ .++..+. ... .+++.+..++++|+++++
T Consensus 345 ~~~y~~~~~~~~~~lP~~ii~~~y~~I~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l 424 (514)
T 3sn6_R 345 NQAYAIASSIVSFYVPLVIMVFVYSRVFQEAKRQLQKIDKSEGRFHVQNLSQVEQDGRTGHGLRRSSKFCLKEHKALKTL 424 (514)
T ss_dssp CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-------------------------CHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccchhhhhHHHHHHHHHH
Confidence 34688888889999999999999999993 2222111 000 001111224678999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHhhccchhhchhhHHHHHHHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccccc
Q psy2988 79 IVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAV 156 (184)
Q Consensus 79 ~~i~~~F~icw~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~~~ 156 (184)
++++++|++||+|++++.++..+... .....+..+..+++++||++||+||+ ++++||+++++++++.+.
T Consensus 425 ~~iv~~F~lcwlP~~i~~~~~~~~~~-------~~~~~~~~~~~~l~~~ns~~NPiIY~-~~~~fR~~~~~~l~~~~~ 494 (514)
T 3sn6_R 425 GIIMGTFTLCWLPFFIVNIVHVIQDN-------LIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRS 494 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTT-------SSCHHHHHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccc-------ccchHHHHHHHHHHHHHHhhhHHhhc-CCHHHHHHHHHHhCcCcc
Confidence 99999999999999999888665321 11234556778899999999999999 999999999999976553
No 19
>2koe_A Human cannabinoid receptor 1 - helix 7/8 peptide; GPCR, HCB1, membrane protein, signaling protein; NMR {Homo sapiens}
Probab=99.03 E-value=6.2e-11 Score=64.15 Aligned_cols=37 Identities=22% Similarity=0.478 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhcccceeehhccCHHHHHHHHHHhccc
Q psy2988 118 VLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRG 154 (184)
Q Consensus 118 ~~~~~~l~~~ns~~NPiiY~~~~~~fr~~~~~~~~~~ 154 (184)
..++.+++++||++||+||++.+++||++++++++++
T Consensus 3 ~~~~~~l~~~ns~lNPiIY~~~~~~fr~~~~~~~~~~ 39 (40)
T 2koe_A 3 FAFASMLCLLNSTVNPIIYALRSKDLRHAFRSMFPSA 39 (40)
T ss_dssp HHHHHHHHHHHHHSSTTTTBTTBHHHHHHHTTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhhhc
Confidence 3466778999999999999999999999999988653
No 20
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic}
Probab=98.62 E-value=5e-09 Score=54.02 Aligned_cols=28 Identities=18% Similarity=0.186 Sum_probs=25.2
Q ss_pred cccchhhHHHHHHHHHHHhHHHHHHHHH
Q psy2988 71 SNCTTLMLIVVVTVFLLVEIPLAVVTIL 98 (184)
Q Consensus 71 ~~~~~~~l~~i~~~F~icw~P~~i~~~~ 98 (184)
|+|+++++.+++++|++||+||++..++
T Consensus 1 e~k~~k~l~~vv~~F~icW~P~~i~~~~ 28 (33)
T 2ki9_A 1 DVRLAKTLGLVLAVLLICWFPVLALMAH 28 (33)
T ss_dssp CCSSSSHHHHHHHHHTTTSSHHHHHHTT
T ss_pred CchhhhhHHHHHHHHHHHHhHHHHHHHH
Confidence 4689999999999999999999998654
No 21
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=57.86 E-value=6.1 Score=17.74 Aligned_cols=14 Identities=43% Similarity=0.852 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhccc
Q psy2988 141 RQFRETFKELFIRG 154 (184)
Q Consensus 141 ~~fr~~~~~~~~~~ 154 (184)
+.||+.++++|...
T Consensus 4 krfrkkfkklfkkl 17 (27)
T 2ket_A 4 KRFRKKFKKLFKKL 17 (27)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc
Confidence 57899999988653
No 22
>3arc_M Photosystem II reaction center protein M; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_M* 2axt_M* 3bz1_M* 3bz2_M* 3kzi_M* 3prq_M* 3prr_M* 3a0b_M* 3a0h_M*
Probab=56.31 E-value=18 Score=18.15 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q psy2988 27 TFRVLFVHTGPCISLVVRNLLFW 49 (184)
Q Consensus 27 ~~~~~~~~~iP~~ii~~~y~~i~ 49 (184)
.+...++.++|.+.++++|++-.
T Consensus 8 fiAt~Lfi~iPt~FLlilYvqT~ 30 (36)
T 3arc_M 8 LIATALFVLVPSVFLIILYVQTE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhheec
Confidence 34455667889999999998653
No 23
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=45.30 E-value=29 Score=17.32 Aligned_cols=16 Identities=0% Similarity=0.046 Sum_probs=9.2
Q ss_pred HHHHHHH-HHHHHHHHH
Q psy2988 35 TGPCISL-VVRNLLFWQ 50 (184)
Q Consensus 35 ~iP~~ii-~~~y~~i~~ 50 (184)
++|++++ ++.|..+++
T Consensus 6 ~l~~v~~~~ifYFl~iR 22 (37)
T 2rdd_B 6 ILMLVVFGLIFYFMILR 22 (37)
T ss_dssp HHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 3444444 566777773
No 24
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Probab=38.07 E-value=16 Score=28.62 Aligned_cols=27 Identities=11% Similarity=-0.062 Sum_probs=14.8
Q ss_pred hcccceeehhccCHHHHHHHHHHhccc
Q psy2988 128 SYPINFAIYCGMSRQFRETFKELFIRG 154 (184)
Q Consensus 128 ns~~NPiiY~~~~~~fr~~~~~~~~~~ 154 (184)
|+.+=-+.---+.+.+++.++.++.|+
T Consensus 311 NPiIY~~~~~~fR~~~~~~~~~~~~~~ 337 (448)
T 2z73_A 311 NPMIYSVSHPKFREAISQTFPWVLTCC 337 (448)
T ss_dssp HHHHHHHHCHHHHHHHHHHCGGGGSTT
T ss_pred cchHHHHhhHHHHHHHHHHHHHHHHhc
Confidence 443333333445667777777666544
No 25
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A
Probab=29.96 E-value=74 Score=23.75 Aligned_cols=11 Identities=18% Similarity=0.473 Sum_probs=5.6
Q ss_pred cCHHHHHHHHH
Q psy2988 139 MSRQFRETFKE 149 (184)
Q Consensus 139 ~~~~fr~~~~~ 149 (184)
+.+.+++.++.
T Consensus 312 fR~~~~~~~~~ 322 (364)
T 2ks9_A 312 FRLGFKHAFRC 322 (364)
T ss_dssp HHHHHHHHHSS
T ss_pred HHHHHHHHHhh
Confidence 34555555544
Done!