RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2988
(184 letters)
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 46.1 bits (109), Expect = 2e-06
Identities = 35/166 (21%), Positives = 58/166 (34%), Gaps = 22/166 (13%)
Query: 15 WLSVDFYFTAYYTFRVLFVHTGP------CISLVVRNLLFWQHKRDKLFKENKKSECKRL 68
++S D + + GP C +V ++ H++ ++ K+ K L
Sbjct: 190 YISRDSTTRSNILCMFILGFFGPILIIFFCYFNIVMSV--SNHEK-EMAAMAKRLNAKEL 246
Query: 69 RDSNCT-------TLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFT 121
R + + IV+V+ FLL P AVV +L E + AA + V+F
Sbjct: 247 RKAQAGANAEMRLAKISIVIVSQFLLSWSPYAVVALLAQFGPL--EWVTPYAAQLPVMFA 304
Query: 122 NFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSS 167
S N IY +FRE + F +
Sbjct: 305 ----KASAIHNPMIYSVSHPKFREAISQTFPWVLTCCQFDDKETED 346
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.5 bits (102), Expect = 2e-05
Identities = 46/233 (19%), Positives = 71/233 (30%), Gaps = 89/233 (38%)
Query: 1 MEQLQRPEHAAWVTWLSVDFYFTAYYTFRV----------LFVHTGPCISLVVRNL---L 47
M+ + + A V W D +F Y F + L +H G +R +
Sbjct: 1633 MDLYKTSKAAQDV-WNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 48 FWQHKRD------KLFKE-NKKSECKRLRDSNCTTLMLIVVVTVF-----LLVEIPLAVV 95
++ D K+FKE N+ S R L T F L+E A
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRSEK-GLLSA----TQFTQPALTLMEK--AAF 1744
Query: 96 TIL--------------HVISSSVTEILDYDA----ANVLVLFTNFFIIVSYPINFAIYC 137
L H S+ E Y A A+V+
Sbjct: 1745 EDLKSKGLIPADATFAGH----SLGE---YAALASLADVM-------------------- 1777
Query: 138 GMSRQFRETFKELFIRG-AVQV-GRRNGGGSSRYSL--VNGPR---TCTNETV 183
+ +F RG +QV R+ G S Y + +N R + + E +
Sbjct: 1778 ----SIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEAL 1826
Score = 34.6 bits (79), Expect = 0.016
Identities = 18/92 (19%), Positives = 30/92 (32%), Gaps = 21/92 (22%)
Query: 32 FVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIP 91
V +GP SL NL + K +++ +R + FL V P
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER----------KLKFSNRFLPVASP 426
Query: 92 LAVVTILHVISS---SVTEILDYDAANVLVLF 120
H S +++++ D V F
Sbjct: 427 ------FH--SHLLVPASDLINKDLVKNNVSF 450
Score = 32.7 bits (74), Expect = 0.058
Identities = 34/200 (17%), Positives = 55/200 (27%), Gaps = 76/200 (38%)
Query: 13 VTWL-------SVDFYFTAYYTFRVLFVHTGPCISL-------VVRNLLFWQHKRDKLFK 58
+ WL D+ + + P I + V LL +
Sbjct: 216 LEWLENPSNTPDKDYLLSIPISC--------PLIGVIQLAHYVVTAKLLGFTPGE----- 262
Query: 59 ENKKSECKRLRDSNCTTLMLI--VVVTVFLLVEIPLAVVTILHVISSSVT-EILDYDAAN 115
LR +V AV I+ + + E + +
Sbjct: 263 ---------LRSYLKGATGHSQGLVT----------AVA-----IAETDSWE--SFFVSV 296
Query: 116 VLVLFTNFFIIV----SYPINFAIYCGMSRQFRETFKE-----LFIRG----AVQ--VGR 160
+ FFI V +YP N ++ + E + L I VQ V +
Sbjct: 297 RKAITVLFFIGVRCYEAYP-NTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNK 355
Query: 161 RNGGGSSRY----SLVNGPR 176
N + SLVNG +
Sbjct: 356 TNSHLPAGKQVEISLVNGAK 375
Score = 30.0 bits (67), Expect = 0.45
Identities = 30/191 (15%), Positives = 50/191 (26%), Gaps = 70/191 (36%)
Query: 6 RP---EHAAW-VTWL-SVDFYFTAYYTFRVL---FVHTGPC--------------ISLVV 43
RP H + L +F A L F P LV
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIA----SQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 44 RNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLV-EIPLAVVTILHVIS 102
+ L + + S+ + L L +L +I H ++
Sbjct: 63 KFLGYVSSLVEP-------SKVGQFDQ--VLNLCLTEFENCYLEGNDI--------HALA 105
Query: 103 SSVTEILDYDAANVLVLFTNFF---IIVSYPIN------------------FAIYCGMSR 141
+ + + D L N+ I+ P + AI+ G
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG--- 162
Query: 142 Q--FRETFKEL 150
Q + F+EL
Sbjct: 163 QGNTDDYFEEL 173
Score = 28.1 bits (62), Expect = 2.4
Identities = 9/49 (18%), Positives = 17/49 (34%), Gaps = 12/49 (24%)
Query: 138 GMSRQFRETF---KELFIRGAVQVGRRNGGGSSRYSLV----NGPRTCT 179
GM +T ++++ R G +S++ N P T
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRADNHFKDTYG-----FSILDIVINNPVNLT 1673
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
membrane protein, LCP, mesophase, structural genomics,
PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
Length = 488
Score = 39.3 bits (91), Expect = 3e-04
Identities = 19/124 (15%), Positives = 42/124 (33%), Gaps = 14/124 (11%)
Query: 50 QHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEIL 109
+ + L+ L ++V +F L +PL ++ +
Sbjct: 369 KRVITTFRTGTWDAYRSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAP 428
Query: 110 DYDAANVLVLFTNFFIIVSY---PINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGS 166
+ I++S+ +N IY R+FR+TF+++ V R+
Sbjct: 429 LW--------LMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRS---HVLRQQEPFK 477
Query: 167 SRYS 170
+ +
Sbjct: 478 AHHH 481
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
2ksb_A
Length = 364
Score = 37.7 bits (88), Expect = 0.001
Identities = 20/84 (23%), Positives = 33/84 (39%), Gaps = 15/84 (17%)
Query: 74 TTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSY---- 129
M+IVVV F + +P + +L I+ D + + ++
Sbjct: 246 VVKMMIVVVCTFAICWLPFHIFFLLPYINP------DLYLKKFIQQVYLAIMWLAMSSTM 299
Query: 130 --PINFAIYCGMSRQFRETFKELF 151
PI IYC ++ +FR FK F
Sbjct: 300 YNPI---IYCCLNDRFRLGFKHAF 320
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
engineering, GPCR network, PSI-biology, struct genomics,
membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
{Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
Length = 447
Score = 37.3 bits (86), Expect = 0.002
Identities = 20/124 (16%), Positives = 46/124 (37%), Gaps = 14/124 (11%)
Query: 50 QHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEIL 109
+ R+ ++ + L+ L ++V +F L +PL ++ +
Sbjct: 328 KTTRNAYIQKYLERARSTLQKEVHAAKSLAIIVGLFALCWLPLHIINCFTFFCPDCSHAP 387
Query: 110 DYDAANVLVLFTNFFIIVSY---PINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGS 166
+ I++S+ +N IY R+FR+TF+++ V R+
Sbjct: 388 LW--------LMYLAIVLSHTNSVVNPFIYAYRIREFRQTFRKIIRS---HVLRQQEPFK 436
Query: 167 SRYS 170
+ +
Sbjct: 437 AHHH 440
>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
network, structural genomics, GPCR membrane 7TM NOP ORL1
cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
sapiens}
Length = 434
Score = 37.5 bits (87), Expect = 0.002
Identities = 22/119 (18%), Positives = 44/119 (36%), Gaps = 25/119 (21%)
Query: 38 CISLVVRNLLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTI 97
C SL++R L + +E ++ + T +++VVV VF+ P+ V +
Sbjct: 308 CYSLMIRRL--RGVRLLSGSREKDRNLRR-------ITRLVLVVVAVFVGCWTPVQVFVL 358
Query: 98 LHVISSSVTEILDYDAANVLVLFTNFFIIVSY------PINFAIYCGMSRQFRETFKEL 150
+ ++ V F + Y PI +Y + F+ F++
Sbjct: 359 AQGLG-------VQPSSETAVAILRFCTALGYVNSCLNPI---LYAFLDENFKACFRKF 407
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
lipid receptor, multiple sclerosi autoimmunity,
structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
{Homo sapiens} PDB: 3v2w_A*
Length = 520
Score = 36.8 bits (84), Expect = 0.002
Identities = 18/135 (13%), Positives = 50/135 (37%), Gaps = 12/135 (8%)
Query: 50 QHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEIL 109
+ + R ++ +I+V++VF+ PL ++ +L V T +
Sbjct: 395 KRVITTFRTGTWDAYASRSSENVALLKTVIIVLSVFIACWAPLFILLLLDVGCKVKTCDI 454
Query: 110 DYDAANVLVLFTNFFIIVSY---PINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGS 166
+ A +F++++ N IY +++ R F + + ++V +
Sbjct: 455 LFRA--------EYFLVLAVLNSGTNPIIYTLTNKEMRRAFIRI-MGRPLEVLFQGPHHH 505
Query: 167 SRYSLVNGPRTCTNE 181
+ + + ++
Sbjct: 506 HHHHHHHDYKDDDDK 520
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 36.2 bits (84), Expect = 0.003
Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 25/100 (25%)
Query: 58 KENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVL 117
+K+E + T M+I++V FL+ +P A V I + ++
Sbjct: 242 ATTQKAEKE-------VTRMVIIMVIAFLICWLPYAGVAFY---------IFTHQGSDFG 285
Query: 118 VLFTNFFIIVSY------PINFAIYCGMSRQFRETFKELF 151
+F + P+ IY M++QFR
Sbjct: 286 PIFMTIPAFFAKTSAVYNPV---IYIMMNKQFRNCMVTTL 322
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 35.7 bits (82), Expect = 0.005
Identities = 20/107 (18%), Positives = 43/107 (40%), Gaps = 10/107 (9%)
Query: 57 FKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANV 116
F+ ++ R+ T M++VVV VF++ P+ + I+ +
Sbjct: 364 FRTGTWDAYEKDRNLRRITRMVLVVVAVFIVCWTPIHIYVIIKALI-------TIPETTF 416
Query: 117 LVLFTNFFIIVSYP---INFAIYCGMSRQFRETFKELFIRGAVQVGR 160
+ +F I + Y +N +Y + F+ F+E I + + +
Sbjct: 417 QTVSWHFCIALGYTNSCLNPVLYAFLDENFKRCFREFCIPTSSTIEQ 463
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
nanobody, G protein-coupled RE GPCR, signal
transduction, G protein signaling; HET: P0G; 3.20A
{Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
Length = 514
Score = 33.7 bits (77), Expect = 0.029
Identities = 22/95 (23%), Positives = 34/95 (35%), Gaps = 14/95 (14%)
Query: 60 NKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVL 119
+ K + L +++ F L +P +V I+HVI ++ V
Sbjct: 406 GLRRSSKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVIQDNLI--------RKEVY 457
Query: 120 FTNFFIIVSY---PINFAIYCGMSRQFRETFKELF 151
+ Y N IYC S FR F+EL
Sbjct: 458 --ILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELL 489
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
genomics, PSI-2, protein structure initiative; HET: ITD
OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
Length = 502
Score = 33.3 bits (76), Expect = 0.032
Identities = 7/98 (7%), Positives = 29/98 (29%), Gaps = 9/98 (9%)
Query: 60 NKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVL 119
+ + ++++ F +P + + + N +
Sbjct: 397 TWDAYGSKGHQKRKALKTTVILILAFFACWLPYYIGISIDSFILLEIIKQGCEFENTVHK 456
Query: 120 FTNFFIIVSY------PINFAIYCGMSRQFRETFKELF 151
+ + +++ PI +Y + +F+ + +
Sbjct: 457 WISITEALAFFHCCLNPI---LYAFLGAKFKTSAQHAL 491
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
PSI-2, protein structure initiative, AC technologies
center for gene to 3D structure; HET: ETQ MAL; 2.89A
{Homo sapiens}
Length = 481
Score = 31.7 bits (71), Expect = 0.12
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 12/100 (12%)
Query: 55 KLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAA 114
F+ T M+ +V+ F++ +P + +L+ +
Sbjct: 380 TTFRTGTWDAYGVPLREKKATQMVAIVLGAFIVCWLPFFLTHVLNTHCQT---------C 430
Query: 115 NVLVLFTNFFIIVSY---PINFAIYCGMSRQFRETFKELF 151
+V + + Y +N IY + +FR+ F ++
Sbjct: 431 HVSPELYSATTWLGYVNSALNPVIYTTFNIEFRKAFLKIL 470
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
BETA1-adrenoceptor, stabilising mutat biased agonist;
HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
2ycx_A* 2ycy_A* 2ycz_A*
Length = 315
Score = 31.2 bits (71), Expect = 0.14
Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 14/109 (12%)
Query: 46 LLFWQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSV 105
+ R +K+ L + L +++ VF L +P +V I++V + +
Sbjct: 202 REAKEQIRKIDRASKRKTSRVMLMREHKALKTLGIIMGVFTLCWLPFFLVNIVNVFNRDL 261
Query: 106 TEILDYDAANVLVLFTNFFIIVSY---PINFAIYCGMSRQFRETFKELF 151
+ F + Y +N IYC S FR+ FK L
Sbjct: 262 VPDWLF----------VAFNWLGYANSAMNPIIYC-RSPDFRKAFKRLL 299
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
protein-coupled receptor, GPCR, SI protein-antagonist
complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
Length = 467
Score = 30.8 bits (69), Expect = 0.24
Identities = 15/103 (14%), Positives = 35/103 (33%), Gaps = 7/103 (6%)
Query: 49 WQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEI 108
+ F+ T ++ ++ F++ P V+ +++ +
Sbjct: 361 RAKRVITTFRTGTWDAYPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIP- 419
Query: 109 LDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELF 151
N + + ++ IN A Y + F++TFK L
Sbjct: 420 ------NTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLL 456
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
HET: 5EH D7V OLC; 3.10A {Homo sapiens}
Length = 452
Score = 28.9 bits (64), Expect = 1.1
Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 7/103 (6%)
Query: 49 WQHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEI 108
+ F+ + L ++ F+L IP + ++ +
Sbjct: 346 RAKRVITTFRTGTWDAYLHMNRERKAAKQLGFIMAAFILCWIPYFIFFMVIAFCKNCC-- 403
Query: 109 LDYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELF 151
L +FT + ++ +N IY + F++TFK +
Sbjct: 404 -----NEHLHMFTIWLGYINSTLNPLIYPLCNENFKKTFKRIL 441
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 1.7
Identities = 19/114 (16%), Positives = 43/114 (37%), Gaps = 32/114 (28%)
Query: 39 ISLV---VRNLL----FWQH-KRDKLFKENKKS-------ECKRLRDSNCTTLMLIVVVT 83
+S++ +R+ L W+H DKL + S E +++ D ++
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR----------LS 379
Query: 84 VFLL-VEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPINFAIY 136
VF IP +++++ +++ D V+ + ++ P I
Sbjct: 380 VFPPSAHIPTILLSLIW------FDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
lipidic cubic phase, lipidic, mesophase, cholesterol,
membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
3pds_A*
Length = 500
Score = 27.4 bits (60), Expect = 2.9
Identities = 27/121 (22%), Positives = 43/121 (35%), Gaps = 8/121 (6%)
Query: 50 QHKRDKLFKENKKSECKRLRDSNCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEIL 109
+ F+ K + L +++ F L +P +V I+HVI
Sbjct: 382 AKRVITTFRTGTWDAYKFCLKEHKALKTLGIIMGTFTLCWLPFFIVNIVHVI-------Q 434
Query: 110 DYDAANVLVLFTNFFIIVSYPINFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSRY 169
D + + N+ V+ N IYC S FR F+EL + G SS
Sbjct: 435 DNLIRKEVYILLNWIGYVNSGFNPLIYC-RSPDFRIAFQELLCLRRSSLKAYGNGYSSNG 493
Query: 170 S 170
+
Sbjct: 494 N 494
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop,
transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces
cerevisiae} PDB: 3bjy_A* 3osp_A*
Length = 434
Score = 27.3 bits (61), Expect = 2.9
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 2/33 (6%)
Query: 125 IIVSYPINFAIYCGMSRQFRETFKELFIRGAVQ 157
I + Y F + S F T K L I +
Sbjct: 128 ISLPY--TFEQFQLKSEAFYSTLKRLNIFNLIL 158
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A
{Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A*
2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A*
2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Length = 138
Score = 25.6 bits (57), Expect = 6.9
Identities = 6/38 (15%), Positives = 14/38 (36%), Gaps = 10/38 (26%)
Query: 95 VTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPIN 132
V ++V ++ E+L+ D I+ +
Sbjct: 30 VNTINVSDVNIDELLNEDI----------LILGCSAMT 57
>2qtq_A Transcriptional regulator, TETR family; transcription regulator,
DNA/RNA-binding 3-helical bundle FO turn helix motif,
HTH motif; HET: MSE; 1.85A {Novosphingobium
aromaticivorans} PDB: 2rha_A*
Length = 213
Score = 25.7 bits (57), Expect = 9.3
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 7 PEHAAWVTWLSVDFYFTAYYTFRVLF 32
P+ + + D +F+A + F
Sbjct: 160 PQLFYFTVTGAADRFFSARLVLKHCF 185
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.329 0.140 0.433
Gapped
Lambda K H
0.267 0.0775 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,832,832
Number of extensions: 154498
Number of successful extensions: 366
Number of sequences better than 10.0: 1
Number of HSP's gapped: 358
Number of HSP's successfully gapped: 28
Length of query: 184
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 96
Effective length of database: 4,244,745
Effective search space: 407495520
Effective search space used: 407495520
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.5 bits)