RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2988
         (184 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 51.9 bits (123), Expect = 6e-09
 Identities = 24/157 (15%), Positives = 49/157 (31%), Gaps = 8/157 (5%)

Query: 12  WVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVRNLLFWQHKRDKLFKENKKSECKRLRDS 71
                  +    ++  +  +     P I +           ++   ++ + +  ++    
Sbjct: 190 DYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQESATTQKAE-- 247

Query: 72  NCTTLMLIVVVTVFLLVEIPLAVVTILHVISSSVTEILDYDAANVLVLFTNFFIIVSYPI 131
              T M+I++V  FL+  +P A V                D   + +    FF   S   
Sbjct: 248 KEVTRMVIIMVIAFLICWLPYAGVAFYIFTHQG------SDFGPIFMTIPAFFAKTSAVY 301

Query: 132 NFAIYCGMSRQFRETFKELFIRGAVQVGRRNGGGSSR 168
           N  IY  M++QFR         G   +G      +  
Sbjct: 302 NPVIYIMMNKQFRNCMVTTLCCGKNPLGDDEASTTVS 338


>d1jiha2 e.8.1.7 (A:1-389) DNA polymerase eta {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 389

 Score = 25.3 bits (54), Expect = 5.3
 Identities = 5/26 (19%), Positives = 11/26 (42%)

Query: 126 IVSYPINFAIYCGMSRQFRETFKELF 151
           +  + ++   Y   SR+  + FK   
Sbjct: 121 VEDHKVSLEPYRRESRKALKIFKSAC 146


>d1lvoa_ b.47.1.4 (A:) Coronavirus main proteinase (3Cl-pro,
           putative coronavirus nsp2) {Transmissible
           gastroenteritis virus [TaxId: 11149]}
          Length = 299

 Score = 24.4 bits (53), Expect = 8.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)

Query: 99  HVISSSVTEILDYDAANVLVLFTNFFI 125
           HVI+S  T +++Y+     V   NF +
Sbjct: 41  HVIASDTTRVINYENEMSSVRLHNFSV 67


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.329    0.140    0.433 

Gapped
Lambda     K      H
   0.267   0.0438    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 695,970
Number of extensions: 29583
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's gapped: 55
Number of HSP's successfully gapped: 4
Length of query: 184
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 104
Effective length of database: 1,309,196
Effective search space: 136156384
Effective search space used: 136156384
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.8 bits)