Query psy2989
Match_columns 66
No_of_seqs 61 out of 63
Neff 4.7
Searched_HMMs 13730
Date Fri Aug 16 22:39:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2989.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2989hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1u19a_ f.13.1.2 (A:) Rhodopsi 96.7 0.0027 2E-07 40.4 6.3 58 2-66 78-135 (348)
2 d1ng7a_ a.178.1.1 (A:) Soluble 7.9 48 0.0035 17.4 0.4 9 4-12 21-29 (60)
3 d1tuga1 c.78.1.1 (A:1-150,A:15 7.7 64 0.0047 20.6 1.0 12 4-15 138-149 (310)
4 d2erla_ a.10.1.1 (A:) ER-1 {Eu 6.3 80 0.0058 15.0 0.7 10 19-28 28-37 (40)
5 d2vy4a1 g.37.1.7 (A:53-87) U11 4.8 1.5E+02 0.011 13.7 1.2 10 49-58 19-28 (35)
6 d1rzhh2 f.23.10.1 (H:11-35) Ph 4.3 1.6E+02 0.012 12.7 1.0 7 53-59 4-10 (26)
7 d1qled_ f.23.8.1 (D:) Bacteria 4.3 2.5E+02 0.018 13.4 2.0 13 53-65 29-41 (43)
8 d1nekd_ f.21.2.2 (D:) Succinat 4.2 3.1E+02 0.023 14.4 3.1 24 40-63 43-66 (113)
9 d1iv0a_ c.55.3.8 (A:) Hypothet 3.9 43 0.0032 18.2 -1.6 10 2-11 14-23 (98)
10 d1jb0i_ f.23.17.1 (I:) Subunit 3.5 1.7E+02 0.012 13.8 0.8 6 13-18 8-13 (38)
No 1
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
Probab=96.65 E-value=0.0027 Score=40.44 Aligned_cols=58 Identities=21% Similarity=0.360 Sum_probs=41.2
Q ss_pred chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989 2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 66 (66)
Q Consensus 2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R 66 (66)
+||+||+++++..+|..++....+... .....|. ....+...+-..|++..+.+|+-|
T Consensus 78 nLaiaDll~~~~~~~~~~~~~~~~~~~---~~~~~c~----~~~~~~~~~~~~s~~~l~~is~~R 135 (348)
T d1u19a_ 78 NLAVADLFMVFGGFTTTLYTSLHGYFV---FGPTGCN----LEGFFATLGGEIALWSLVVLAIER 135 (348)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHTSCT---THHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhccCccc---cCchhhh----hhhhccccceeeecchhhhhhccc
Confidence 699999999999999998877754322 2233333 334556667788888888888765
No 2
>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}
Probab=7.92 E-value=48 Score=17.40 Aligned_cols=9 Identities=11% Similarity=0.530 Sum_probs=6.0
Q ss_pred hhHhhhhhh
Q psy2989 4 ALSDMFTLL 12 (66)
Q Consensus 4 AvaDllvml 12 (66)
||+|||-..
T Consensus 21 aI~DLLkSV 29 (60)
T d1ng7a_ 21 CINDLLQAV 29 (60)
T ss_dssp TTHHHHHHH
T ss_pred HHHHHHHhc
Confidence 677877554
No 3
>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}
Probab=7.71 E-value=64 Score=20.64 Aligned_cols=12 Identities=33% Similarity=0.465 Sum_probs=9.9
Q ss_pred hhHhhhhhhhhh
Q psy2989 4 ALSDMFTLLFPA 15 (66)
Q Consensus 4 AvaDllvml~y~ 15 (66)
|++|++|+.+..
T Consensus 138 ~LaD~~Ti~e~~ 149 (310)
T d1tuga1 138 TLLDLFTIQETQ 149 (310)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 789999998853
No 4
>d2erla_ a.10.1.1 (A:) ER-1 {Euplotes raikovi [TaxId: 5938]}
Probab=6.32 E-value=80 Score=14.97 Aligned_cols=10 Identities=40% Similarity=0.780 Sum_probs=7.2
Q ss_pred HHHHhhcCCC
Q psy2989 19 FYMYTFGNHY 28 (66)
Q Consensus 19 ~y~y~~~~~~ 28 (66)
.|||+++|+.
T Consensus 28 cymyiysncp 37 (40)
T d2erla_ 28 CYMYIYSNCP 37 (40)
T ss_dssp HHHHHHHHST
T ss_pred eEEEeecCCC
Confidence 5788877754
No 5
>d2vy4a1 g.37.1.7 (A:53-87) U11/U12 small nuclear ribonucleoprotein 48 kDa protein, U11-48K {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.81 E-value=1.5e+02 Score=13.70 Aligned_cols=10 Identities=40% Similarity=0.185 Sum_probs=6.6
Q ss_pred HHHHHHHHHH
Q psy2989 49 TLFHTASIWL 58 (66)
Q Consensus 49 ~~~HTiSiwL 58 (66)
..=|.+|+||
T Consensus 19 L~kH~asCrL 28 (35)
T d2vy4a1 19 LAKHMASCRL 28 (35)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhH
Confidence 3457778776
No 6
>d1rzhh2 f.23.10.1 (H:11-35) Photosystem II reaction centre subunit H, transmembrane region {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=4.34 E-value=1.6e+02 Score=12.74 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=4.6
Q ss_pred HHHHHHH
Q psy2989 53 TASIWLT 59 (66)
Q Consensus 53 TiSiwLT 59 (66)
+.|||+-
T Consensus 4 slaiw~f 10 (26)
T d1rzhh2 4 SLAIYSF 10 (26)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5677764
No 7
>d1qled_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Paracoccus denitrificans [TaxId: 266]}
Probab=4.28 E-value=2.5e+02 Score=13.43 Aligned_cols=13 Identities=31% Similarity=0.227 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHc
Q psy2989 53 TASIWLTLALAVQ 65 (66)
Q Consensus 53 TiSiwLTv~LAv~ 65 (66)
-++|-+.+.||+.
T Consensus 29 i~~i~~liflAi~ 41 (43)
T d1qled_ 29 ILSIAVLVFLALA 41 (43)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 3456667777764
No 8
>d1nekd_ f.21.2.2 (D:) Succinate dehydrogenase subunit SdhD {Escherichia coli [TaxId: 562]}
Probab=4.20 E-value=3.1e+02 Score=14.44 Aligned_cols=24 Identities=13% Similarity=0.160 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2989 40 WNIMNEVIPTLFHTASIWLTLALA 63 (66)
Q Consensus 40 ~~~~h~~~~~~~HTiSiwLTv~LA 63 (66)
|.-..+.+.+.+..+...+++..+
T Consensus 43 y~~~~~~~~~~~~~il~~l~l~~~ 66 (113)
T d1nekd_ 43 YEVWIGFFASAFTKVFTLLALFSI 66 (113)
T ss_dssp HHHHHHHHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHHH
Confidence 333445555555555555554443
No 9
>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}
Probab=3.86 E-value=43 Score=18.17 Aligned_cols=10 Identities=10% Similarity=0.039 Sum_probs=6.2
Q ss_pred chhhHhhhhh
Q psy2989 2 AMALSDMFTL 11 (66)
Q Consensus 2 ~mAvaDllvm 11 (66)
|+|++|-+.+
T Consensus 14 GiAisd~~~~ 23 (98)
T d1iv0a_ 14 GLAVGEEGVP 23 (98)
T ss_dssp EEEEECSCCS
T ss_pred EEEEecCCCC
Confidence 6677775544
No 10
>d1jb0i_ f.23.17.1 (I:) Subunit VIII of photosystem I reaction centre, PsaI {Synechococcus elongatus [TaxId: 32046]}
Probab=3.53 E-value=1.7e+02 Score=13.77 Aligned_cols=6 Identities=33% Similarity=0.933 Sum_probs=3.5
Q ss_pred hhhhHH
Q psy2989 13 FPAPWL 18 (66)
Q Consensus 13 ~y~P~~ 18 (66)
+|+||.
T Consensus 8 syLPwI 13 (38)
T d1jb0i_ 8 SFLPWI 13 (38)
T ss_dssp TTHHHH
T ss_pred Hhcchh
Confidence 566664
Done!