RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2989
         (66 letters)



>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
           22A1-like.  Aldehyde dehydrogenase family members
           ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
           (Arabidopsis thaliana, EC=1.2.1.3), and similar
           sequences, are in this CD. Significant improvement of
           stress tolerance in tobacco plants was observed by
           overexpressing the ALDH22A1 gene from maize (Zea mays)
           and was accompanied by a reduction of malondialdehyde
           derived from cellular lipid peroxidation.
          Length = 465

 Score = 29.2 bits (66), Expect = 0.10
 Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 5/30 (16%)

Query: 27  HYKPLSPVAACYAWN-----IMNEVIPTLF 51
            Y+PL  V A  +WN     ++  +I  LF
Sbjct: 117 EYEPLGVVGAIVSWNYPFHNLLGPIIAALF 146


>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
           Provisional.
          Length = 459

 Score = 26.6 bits (59), Expect = 0.78
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 4   ALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNE 45
           A  ++F++LF  P+L +  TFG +  PL+  AA    N++ E
Sbjct: 314 ATEEVFSVLFDNPFL-HTTTFGGN--PLACAAALATINVLLE 352


>gnl|CDD|199871 cd06251, M14_ASTE_ASPA_like_1, Peptidase M14 Succinylglutamate
           desuccinylase (ASTE)/aspartoacylase (ASPA)-like;
           uncharacterized subgroup.  A functionally
           uncharacterized subgroup of the Succinylglutamate
           desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily
           which is part of the M14 family of
           metallocarboxypeptidases. ASTE catalyzes the fifth and
           last step in arginine catabolism by the arginine
           succinyltransferase pathway, and aspartoacylase (ASPA,
           also known as aminoacylase 2, and ACY-2; EC:3.5.1.15)
           cleaves N-acetyl L-aspartic acid (NAA) into aspartate
           and acetate. NAA is abundant in the brain, and
           hydrolysis of NAA by ASPA may help maintain white
           matter. ASPA is an NAA scavenger in other tissues.
           Mutations in the gene encoding ASPA cause Canavan
           disease (CD), a fatal progressive neurodegenerative
           disorder involving dysmyelination and spongiform
           degeneration of white matter in children. This enzyme
           binds zinc which is necessary for activity. Measurement
           of elevated NAA levels in urine is used in the diagnosis
           of CD.
          Length = 287

 Score = 25.6 bits (57), Expect = 1.9
 Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 5/27 (18%)

Query: 35  AACYAWNIMNEVIPTL-----FHTASI 56
           A+  A     E++         HT +I
Sbjct: 93  ASRLAHLFFTEILSHADYGIDLHTGAI 119


>gnl|CDD|236945 PRK11644, PRK11644, sensory histidine kinase UhpB; Provisional.
          Length = 495

 Score = 25.3 bits (56), Expect = 2.0
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 5   LSDMFTLLFPAPWLFYMYTFGNHYKPLSP--VAACYAWNIMNEVIPTLFHTASIWLTLAL 62
           L+   TL  P   LF+ Y   N + PL P  V+    W   + V   L    SIWL L L
Sbjct: 142 LTGGLTLA-PTCLLFWHYLAQNTWLPLGPSLVSQPVNWRGRHIVWYLLLFVLSIWLQLGL 200


>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
           aldehyde dehydrogenase AldA (AAD23400)-like.  Putative
           aldehyde dehydrogenase, AldA, from Streptomyces
           aureofaciens (locus AAD23400) and other similar
           sequences are present in this CD.
          Length = 446

 Score = 24.0 bits (53), Expect = 6.6
 Identities = 8/15 (53%), Positives = 8/15 (53%)

Query: 27  HYKPLSPVAACYAWN 41
             KPL  VAA   WN
Sbjct: 111 RRKPLGVVAAIVPWN 125


>gnl|CDD|226369 COG3851, UhpB, Signal transduction histidine kinase,
           glucose-6-phosphate specific [Signal transduction
           mechanisms].
          Length = 497

 Score = 24.0 bits (52), Expect = 7.9
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 2   AMALSDMFT---LLFPAPWLFYMYTFGNHYKPLSP--VAACYAWNIMNEVIPTLFHTASI 56
             AL    T   LL P  +LF+ Y   N + PL P  +         + V   L     +
Sbjct: 134 WNALLLSLTGGLLLTPFCYLFWDYLANNTWLPLGPSLIHHPINLRGKHLVWYLLLFIIGL 193

Query: 57  WLTLAL 62
            L L L
Sbjct: 194 LLQLGL 199


>gnl|CDD|234123 TIGR03153, cytochr_NrfH, cytochrome c nitrate reductase, small
          subunit.  Members of this protein family are NrfH, a
          tetraheme cytochrome c. NrfH is the cytochrome c
          nitrate reductase small subunit, and forms a
          heterodimer with NrfA, the catalytic subunit. While
          NrfA can act as a monomer, NrfH can bind to and anchor
          NrfA in the membrane and enables electron transfer to
          NrfA from quinones [Energy metabolism, Electron
          transport].
          Length = 135

 Score = 23.5 bits (51), Expect = 8.2
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)

Query: 18 LFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTA 54
            + Y  G  Y    P  AC   ++MN    T  H++
Sbjct: 13 YAFYYAKGLSYLSDDP-EACVNCHVMNPQYATWQHSS 48


>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
           Srw.  Chemoreception is mediated in Caenorhabditis
           elegans by members of the seven-transmembrane
           G-protein-coupled receptor class (7TM GPCRs) of proteins
           which are of the serpentine type. Srw is a solo family
           amongst the superfamilies of chemoreceptors.
           Chemoperception is one of the central senses of soil
           nematodes like C. elegans which are otherwise 'blind'
           and 'deaf'. The genes encoding Srw do not appear to be
           under as strong an adaptive evolutionary pressure as
           those of Srz.
          Length = 317

 Score = 23.7 bits (52), Expect = 9.4
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 12/73 (16%)

Query: 1   MAMALSDMFTLLFP----APWLFYMYTFGNHYKPLSPVAACYAWNIMN---EVIPTLFHT 53
           + +A+ D+ T+L       P     Y       P S     Y   +++   E +  +   
Sbjct: 36  IGIAICDIITMLLTIYNFIPEFIISYENSECIPPDS-----YLKVLLDWILESLQDISRR 90

Query: 54  ASIWLTLALAVQR 66
            S WL + +A+ R
Sbjct: 91  CSTWLGVFMALIR 103


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.331    0.137    0.475 

Gapped
Lambda     K      H
   0.267   0.0785    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,415,694
Number of extensions: 241774
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 323
Number of HSP's successfully gapped: 16
Length of query: 66
Length of database: 10,937,602
Length adjustment: 37
Effective length of query: 29
Effective length of database: 9,296,504
Effective search space: 269598616
Effective search space used: 269598616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 53 (24.1 bits)