RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2989
         (66 letters)



>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision
           repair, xeroderma pigmentosum, cytoplasm, DNA repair;
           HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A*
           3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A*
           3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A
           2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
          Length = 1158

 Score = 27.6 bits (60), Expect = 0.25
 Identities = 5/40 (12%), Positives = 13/40 (32%)

Query: 16  PWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTAS 55
           P + Y       +  ++     Y   + ++  P     A+
Sbjct: 674 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALAN 713


>3t2c_A Fructose-1,6-bisphosphate aldolase/phosphatase; (beta/alpha)8 TIM
           barrel, FBP, F6P, DHAP, GAP, phosphorylati lyase,
           hydrolase; HET: 13P; 1.30A {Thermoproteus neutrophilus}
           PDB: 3t2b_A* 3t2d_A* 3t2e_A* 3t2f_A 3t2g_A*
          Length = 407

 Score = 26.9 bits (59), Expect = 0.41
 Identities = 9/37 (24%), Positives = 12/37 (32%)

Query: 13  FPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPT 49
           F  P L + +  G+H  PL P             I  
Sbjct: 255 FAHPHLVHGWMRGSHAGPLMPARFISVDPERRIAIGP 291


>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
           lipid receptor, multiple sclerosi autoimmunity,
           structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
           {Homo sapiens} PDB: 3v2w_A*
          Length = 520

 Score = 26.0 bits (56), Expect = 0.94
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 3   MALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLAL 62
           +ALSD+   +     L           P    A  +           +  +AS++  LA+
Sbjct: 105 LALSDLLAGVAYTANLLLSGATTYKLTP----AQWFLREGSM----FVALSASVFSLLAI 156

Query: 63  AVQR 66
           A++R
Sbjct: 157 AIER 160


>3r1m_A Putative uncharacterized protein ST0318; sulfolobus
           fructose-1,6-bisphosphatase-like fold, hydrolase/ Mg
           binding, metal binding protein; 1.50A {Sulfolobus
           tokodaii} PDB: 1umg_A*
          Length = 385

 Score = 24.9 bits (54), Expect = 1.8
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 13  FPAPWLFYMYTFGNHYKPLSPVAACYA 39
           F  P L   +  G+HY PL PV+   A
Sbjct: 255 FAFPHLVPGWMRGSHYGPLMPVSQRDA 281


>2w5f_A Endo-1,4-beta-xylanase Y; cellulosome, glycosidase, xylan
           degradation, hydrolase; HET: XYP; 1.90A {Clostridium
           thermocellum} PDB: 2wze_A* 2wys_A*
          Length = 540

 Score = 23.8 bits (51), Expect = 5.6
 Identities = 5/28 (17%), Positives = 12/28 (42%)

Query: 20  YMYTFGNHYKPLSPVAACYAWNIMNEVI 47
           Y+       +   P    YA++++N  +
Sbjct: 301 YIKNMFAEIQRQYPSLNLYAYDVVNAAV 328


>1nq6_A XYS1; glycoside hydrolase family 10, xylanase, xylan degradation,,
           hydrolase; 1.78A {Streptomyces halstedii} SCOP: c.1.8.3
          Length = 302

 Score = 23.4 bits (51), Expect = 7.6
 Identities = 7/42 (16%), Positives = 17/42 (40%), Gaps = 8/42 (19%)

Query: 20  YMYTFGNHYKPLSPVAACYAWNIMNEVI---PTLFHTASIWL 58
           ++     HYK        ++W+++NE      +    +S + 
Sbjct: 107 HITQVMTHYK-----GKIHSWDVVNEAFQDGGSGARRSSPFQ 143


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.331    0.137    0.475 

Gapped
Lambda     K      H
   0.267   0.0466    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,021,954
Number of extensions: 42070
Number of successful extensions: 133
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 11
Length of query: 66
Length of database: 6,701,793
Length adjustment: 37
Effective length of query: 29
Effective length of database: 5,668,716
Effective search space: 164392764
Effective search space used: 164392764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 51 (24.1 bits)