RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2989
         (66 letters)



>d1umga_ d.280.1.1 (A:) ST0318 {Archaeon Sulfolobus tokodaii [TaxId:
           111955]}
          Length = 362

 Score = 25.1 bits (55), Expect = 0.55
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 13  FPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIP 48
           F  P L   +  G+HY PL PV+   A     +  P
Sbjct: 253 FAFPHLVPGWMRGSHYGPLMPVSQRDAKATRFDGPP 288


>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 190

 Score = 23.2 bits (50), Expect = 2.6
 Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 2/33 (6%)

Query: 1  MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSP 33
          +   L  +     P P L  ++   +    L P
Sbjct: 16 LMALLQHVALQFEPGPLLCCLHA--DMLGSLGP 46


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.331    0.137    0.475 

Gapped
Lambda     K      H
   0.267   0.0659    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 251,675
Number of extensions: 8651
Number of successful extensions: 18
Number of sequences better than 10.0: 1
Number of HSP's gapped: 18
Number of HSP's successfully gapped: 4
Length of query: 66
Length of database: 2,407,596
Length adjustment: 35
Effective length of query: 31
Effective length of database: 1,927,046
Effective search space: 59738426
Effective search space used: 59738426
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 47 (22.0 bits)