BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy299
(240 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P5Q|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|C Chain C, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5Q|D Chain D, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Reduced Form
pdb|2P5R|A Chain A, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
pdb|2P5R|B Chain B, Crystal Structure Of The Poplar Glutathione Peroxidase 5
In The Oxidized Form
Length = 170
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 88/170 (51%), Positives = 119/170 (70%), Gaps = 1/170 (0%)
Query: 34 MADDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEK 93
MA + KN E+V+DFTVK+ K DV LS +KG VL+IVNVAS+CG T +Y E+ +L EK
Sbjct: 1 MATQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEK 60
Query: 94 FRDRGLRILAFPCNQFGGQEPGDADQICEFTKKK-NVQFDLFEKINVNGDNAHPLWKFLK 152
++D+GL ILAFPCNQFG +EPG DQI +F + +F +F+KI+VNG+NA PL++FLK
Sbjct: 61 YKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLK 120
Query: 153 HKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTS 202
+ G D I+WNF KF+V+K+G V+R+ SP SL I+ L S
Sbjct: 121 LGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQLLEIS 170
>pdb|2OBI|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Phospholipid Hydroperoxide Glutathione
Peroxidase (Gpx4)
Length = 183
Score = 170 bits (431), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/163 (50%), Positives = 113/163 (69%), Gaps = 5/163 (3%)
Query: 37 DSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRD 96
D W+ A ++++F+ K+I G V L Y+G V ++ NVAS+CG T +Y +LV+L ++ +
Sbjct: 19 DDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARYAE 78
Query: 97 RGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLK--HK 154
GLRILAFPCNQFG QEPG ++I EF NV+FD+F KI VNGD+AHPLWK++K K
Sbjct: 79 CGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPK 138
Query: 155 QGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASL---IPH 194
G L +AIKWNFTKF++DKNG V+R+ P + +PH
Sbjct: 139 GKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPH 181
>pdb|2WGR|A Chain A, Combining Crystallography And Molecular Dynamics: The Case
Of Schistosoma Mansoni Phospholipid Glutathione
Peroxidase
Length = 169
Score = 170 bits (431), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 111/152 (73%), Gaps = 1/152 (0%)
Query: 38 SWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR 97
S K+ ++Y+FTVK+I G DV L Y+GHV +IVNVA + G T K+Y++L E+ + +
Sbjct: 4 SHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKSGATDKNYRQLQEMHTRLVGK 63
Query: 98 GLRILAFPCNQFGGQEPGDADQICEF-TKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQG 156
GLRILAFPCNQFGGQEP +I +F T+K VQFD+F KI VNG +A L+KFLK +Q
Sbjct: 64 GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQH 123
Query: 157 GTLVDAIKWNFTKFIVDKNGVPVERHAANASP 188
GTL + IKWNF+KF+VD+ G PV+R++ +P
Sbjct: 124 GTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAP 155
>pdb|2V1M|A Chain A, Crystal Structure Of Schistosoma Mansoni Glutathione
Peroxidase
Length = 169
Score = 169 bits (429), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 82/152 (53%), Positives = 111/152 (73%), Gaps = 1/152 (0%)
Query: 38 SWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR 97
S K+ ++Y+FTVK+I G DV L Y+GHV +IVNVA + G T K+Y++L E+ + +
Sbjct: 4 SHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKXGATDKNYRQLQEMHTRLVGK 63
Query: 98 GLRILAFPCNQFGGQEPGDADQICEF-TKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQG 156
GLRILAFPCNQFGGQEP +I +F T+K VQFD+F KI VNG +A L+KFLK +Q
Sbjct: 64 GLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLKSRQH 123
Query: 157 GTLVDAIKWNFTKFIVDKNGVPVERHAANASP 188
GTL + IKWNF+KF+VD+ G PV+R++ +P
Sbjct: 124 GTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAP 155
>pdb|2GS3|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 4(Gpx4)
Length = 185
Score = 160 bits (405), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 80/162 (49%), Positives = 111/162 (68%), Gaps = 5/162 (3%)
Query: 38 SWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR 97
S + A ++++F+ K+I G V L Y+G V ++ NVAS+ G T +Y +LV+L ++ +
Sbjct: 22 SMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLHARYAEC 81
Query: 98 GLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLK--HKQ 155
GLRILAFPCNQFG QEPG ++I EF NV+FD+F KI VNGD+AHPLWK++K K
Sbjct: 82 GLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQPKG 141
Query: 156 GGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASL---IPH 194
G L +AIKWNFTKF++DKNG V+R+ P + +PH
Sbjct: 142 KGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPH 183
>pdb|2VUP|A Chain A, Crystal Structure Of A Type Ii Tryparedoxin-Dependant
Peroxidase From Trypanosoma Brucei
Length = 190
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 75/161 (46%), Positives = 105/161 (65%), Gaps = 6/161 (3%)
Query: 42 AETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRI 101
A +++DF V + + L +KG L+I NVAS+CGYT Y+ L K++ +G +
Sbjct: 25 ASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTV 84
Query: 102 LAFPCNQFGGQEPGDADQICEFTKKK-NVQFDLFEKINVNGDNAHPLWKFLKHKQGGTL- 159
LAFPCNQFGGQEPG+ ++I EF K +F + KINVNG+NAHPL++++K + G L
Sbjct: 85 LAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILK 144
Query: 160 VDAIKWNFTKFIVDKNGVPVERHAANAS----PASLIPHIE 196
AIKWNFT F++D++GVPVER + AS LIP +E
Sbjct: 145 TKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPLLE 185
>pdb|3E0U|A Chain A, Crystal Structure Of T. Cruzi Gpx1
Length = 166
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 71/149 (47%), Positives = 96/149 (64%), Gaps = 2/149 (1%)
Query: 41 NAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLR 100
A+++Y+F V G+ LS +KGH L+I NVASRCGYT Y+ L K++ +G
Sbjct: 1 GAKSIYEFQVNAADGKPYDLSQHKGHPLLIYNVASRCGYTKGGYETATTLYNKYKGQGFT 60
Query: 101 ILAFPCNQFGGQEPGDADQICEFTKKK-NVQFDLFEKINVNGDNAHPLWKFLKHKQGGTL 159
+LAFPCNQF GQEPG A ++ EF + F + KI+VNG AHPL++F+K G
Sbjct: 61 VLAFPCNQFAGQEPGTALEVKEFACTRFKADFPIMAKIDVNGSKAHPLYEFMKATIPGLF 120
Query: 160 -VDAIKWNFTKFIVDKNGVPVERHAANAS 187
AIKWNFT F++D++GVPVER + AS
Sbjct: 121 GTKAIKWNFTSFLIDRHGVPVERFSPGAS 149
>pdb|3DWV|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|3DWV|B Chain B, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
Length = 187
Score = 144 bits (364), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/148 (47%), Positives = 99/148 (66%), Gaps = 2/148 (1%)
Query: 42 AETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRI 101
A +++DF V + + L +KG L+I NVAS+CGYT Y+ L K++ +G +
Sbjct: 23 ASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTV 82
Query: 102 LAFPCNQFGGQEPGDADQICEFTKKK-NVQFDLFEKINVNGDNAHPLWKFLKHKQGGTL- 159
LAFP NQFGGQEPG+ ++I EF K +F + KINVNG+NAHPL++++K + G L
Sbjct: 83 LAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILA 142
Query: 160 VDAIKWNFTKFIVDKNGVPVERHAANAS 187
AIKWNFT F++D++GVPVER + AS
Sbjct: 143 TKAIKWNFTSFLIDRDGVPVERFSPGAS 170
>pdb|2RM5|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Oxidized Form
pdb|2RM6|A Chain A, Glutathione Peroxidase-Type Tryparedoxin Peroxidase,
Reduced Form
Length = 167
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 69/148 (46%), Positives = 98/148 (66%), Gaps = 2/148 (1%)
Query: 42 AETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRI 101
+++DF V + + L +KG L+I NVAS+CGYT Y+ L K++ +G +
Sbjct: 3 GSSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYNKYKSQGFTV 62
Query: 102 LAFPCNQFGGQEPGDADQICEFTKKK-NVQFDLFEKINVNGDNAHPLWKFLKHKQGGTL- 159
LAFP NQFGGQEPG+ ++I EF K +F + KINVNG+NAHPL++++K + G L
Sbjct: 63 LAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYMKKTKPGILA 122
Query: 160 VDAIKWNFTKFIVDKNGVPVERHAANAS 187
AIKWNFT F++D++GVPVER + AS
Sbjct: 123 TKAIKWNFTSFLIDRDGVPVERFSPGAS 150
>pdb|3CMI|A Chain A, Crystal Structure Of Glutathione-Dependent Phospholipid
Peroxidase Hyr1 From The Yeast Saccharomyces Cerevisiae
Length = 171
Score = 138 bits (347), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 97/147 (65%), Gaps = 3/147 (2%)
Query: 54 KGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQE 113
KG+ P KG V++IVNVAS+CG+T YKEL L ++++D G I+ FPCNQFG QE
Sbjct: 21 KGQPFPFDQLKGKVVLIVNVASKCGFT-PQYKELEALYKRYKDEGFTIIGFPCNQFGHQE 79
Query: 114 PGDADQICEFTK-KKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTL-VDAIKWNFTKFI 171
PG ++I +F + V F + +KI+VNG N P++KFLK ++ G L + IKWNF KF+
Sbjct: 80 PGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGMLGLRGIKWNFEKFL 139
Query: 172 VDKNGVPVERHAANASPASLIPHIEIL 198
VDK G ER+++ P+SL IE L
Sbjct: 140 VDKKGKVYERYSSLTKPSSLSETIEEL 166
>pdb|2P31|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 7
pdb|2P31|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 7
Length = 181
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 63/165 (38%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 37 DSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRD 96
S + + YDF NI+G+ V L Y+G V ++VNVAS CG+T +HY+ L +L
Sbjct: 21 QSMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGP 80
Query: 97 RGLRILAFPCNQFGGQEPGDADQICEFTKKK-NVQFDLFEKINVNGDNAHPLWKFLKHKQ 155
+LAFPCNQFG QEP +I F ++ +V F +F KI V G AHP +K+L
Sbjct: 81 HHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYLAQTS 140
Query: 156 GGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGR 200
G WNF K++V +G V S + P I L R
Sbjct: 141 G----KEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITALVR 181
>pdb|2F8A|A Chain A, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
pdb|2F8A|B Chain B, Crystal Structure Of The Selenocysteine To Glycine Mutant
Of Human Glutathione Peroxidase 1
Length = 208
Score = 106 bits (265), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 65/186 (34%), Positives = 92/186 (49%), Gaps = 26/186 (13%)
Query: 39 WKNAETVYDFTVKNIKG-EDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR 97
+++ ++VY F+ + + G E V L + +G VL+I NVAS G T + Y ++ EL + R
Sbjct: 20 FQSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPR 79
Query: 98 GLRILAFPCNQFGGQEPGDADQICEFTKKKN------VQFDLFEKINVNGDNAHPLWKFL 151
GL +L FPCNQFG QE ++I K F LFEK VNG AHPL+ FL
Sbjct: 80 GLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFL 139
Query: 152 KHKQGGTLVDA-------------------IKWNFTKFIVDKNGVPVERHAANASPASLI 192
+ DA + WNF KF+V +GVP+ R++ +
Sbjct: 140 REALPAPSDDATALMTDPKLITWSPVCRNDVAWNFEKFLVGPDGVPLRRYSRRFQTIDIE 199
Query: 193 PHIEIL 198
P IE L
Sbjct: 200 PDIEAL 205
>pdb|2I3Y|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 5
Length = 215
Score = 103 bits (258), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 72/191 (37%), Positives = 98/191 (51%), Gaps = 25/191 (13%)
Query: 24 NAETVYDFTSMADDSWKNAE-TVYDFTVKNI-KGEDVPLSTYKGHVLVIVNVASRCGYTG 81
E +Y F SM D K+ + T+YD+ + K E V Y G ++ VNVA+ CG T
Sbjct: 14 GTENLY-FQSMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFVNVATYCGLTA 72
Query: 82 KHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKN------VQFDLFE 135
+ Y EL L E+ + GL +L FPCNQFG QEPGD +I K F LFE
Sbjct: 73 Q-YPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGGGFVPSFQLFE 131
Query: 136 KINVNGDNAHPLWKFLKHKQG------GTL---------VDAIKWNFTKFIVDKNGVPVE 180
K +VNG+ ++ FLKH GT V I+WNF KF+V +G+PV
Sbjct: 132 KGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVGPDGIPVM 191
Query: 181 RHAANASPASL 191
R + A+ +S+
Sbjct: 192 RWSHRATVSSV 202
>pdb|1GP1|A Chain A, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
pdb|1GP1|B Chain B, The Refined Structure Of The Selenoenzyme Glutathione
Peroxidase At 0.2-Nm Resolution
Length = 198
Score = 103 bits (258), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 66/182 (36%), Positives = 89/182 (48%), Gaps = 26/182 (14%)
Query: 43 ETVYDFTVKNIKG-EDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRI 101
TVY F+ + + G E LS+ +G VL+I NVAS G T + Y ++ +L + RGL +
Sbjct: 10 RTVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLXGTTVRDYTQMNDLQRRLGPRGLVV 69
Query: 102 LAFPCNQFGGQEPGDADQICEFTKKKN------VQFDLFEKINVNGDNAHPLWKFLKHKQ 155
L FPCNQFG QE ++I K F LFEK VNG+ AHPL+ FL+
Sbjct: 70 LGFPCNQFGHQENAKNEEILNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLREVL 129
Query: 156 GGTLVDA-------------------IKWNFTKFIVDKNGVPVERHAANASPASLIPHIE 196
DA + WNF KF+V +GVPV R++ + P IE
Sbjct: 130 PTPSDDATALMTDPKFITWSPVCRNDVSWNFEKFLVGPDGVPVRRYSRRFLTIDIEPDIE 189
Query: 197 IL 198
L
Sbjct: 190 TL 191
>pdb|3CYN|A Chain A, The Structure Of Human Gpx8
pdb|3CYN|B Chain B, The Structure Of Human Gpx8
pdb|3CYN|C Chain C, The Structure Of Human Gpx8
Length = 189
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 85/167 (50%), Gaps = 13/167 (7%)
Query: 44 TVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILA 103
+ Y F VK+ KG V L YKG V ++VNVAS C T ++Y L EL ++F +LA
Sbjct: 26 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 85
Query: 104 FPCNQFGGQEPGDADQICEFTKKK-NVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDA 162
FPCNQFG EP + ++ F +K V F +F KI + G P ++F LVD+
Sbjct: 86 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRF--------LVDS 137
Query: 163 IK----WNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIK 205
K WNF K++V+ G V+ + P I L R IK
Sbjct: 138 SKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVIIK 184
>pdb|2HE3|A Chain A, Crystal Structure Of The Selenocysteine To Cysteine Mutant
Of Human Glutathionine Peroxidase 2 (Gpx2)
Length = 208
Score = 98.6 bits (244), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 64/205 (31%), Positives = 98/205 (47%), Gaps = 29/205 (14%)
Query: 42 AETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRI 101
A++ YD + N+ GE V +T++G ++I NVAS CG T + + +L EL +F R L +
Sbjct: 25 AKSFYDLSAINLDGEKVDFNTFRGRAVLIENVASLCGTTTRDFTQLNELQCRF-PRRLVV 83
Query: 102 LAFPCNQFGGQEPGDADQICEFTK------KKNVQFDLFEKINVNGDNAHPLWKFLKHKQ 155
L FPCNQFG QE ++I K F L +K VNG N HP++ +LK
Sbjct: 84 LGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLK--- 140
Query: 156 GGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDK 215
DK P + + + LI + R S + WNF KF++
Sbjct: 141 -----------------DKLPYPYDDPFSLMTDPKLIIWSPV--RRSDVAWNFEKFLIGP 181
Query: 216 NGAPVERHAANASPASLIPNIEKYL 240
G P R++ ++ P+I++ L
Sbjct: 182 EGEPFRRYSRTFPTINIEPDIKRLL 206
>pdb|3KIJ|A Chain A, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|B Chain B, Crystal Structure Of The Human Pdi-Peroxidase
pdb|3KIJ|C Chain C, Crystal Structure Of The Human Pdi-Peroxidase
Length = 180
Score = 98.2 bits (243), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 62/167 (37%), Positives = 85/167 (50%), Gaps = 13/167 (7%)
Query: 44 TVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILA 103
+ Y F VK+ KG V L YKG V ++VNVAS C T ++Y L EL ++F +LA
Sbjct: 17 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLA 76
Query: 104 FPCNQFGGQEPGDADQICEFTKKK-NVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDA 162
FPCNQFG EP + ++ F +K V F +F KI + G P ++F LVD+
Sbjct: 77 FPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRF--------LVDS 128
Query: 163 IK----WNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIK 205
K WNF K++V+ G V+ + P I L R IK
Sbjct: 129 SKKEPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAALVRQVIIK 175
>pdb|2R37|A Chain A, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
pdb|2R37|B Chain B, Crystal Structure Of Human Glutathione Peroxidase 3
(Selenocysteine To Glycine Mutant)
Length = 207
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 61/160 (38%), Positives = 81/160 (50%), Gaps = 23/160 (14%)
Query: 44 TVYDFTVKNIKGED-VPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRIL 102
T+Y++ I GE+ +P Y G ++ VNVAS G TG+ Y EL L E+ GL IL
Sbjct: 16 TIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLTGQ-YIELNALQEELAPFGLVIL 74
Query: 103 AFPCNQFGGQEPGDADQICEFTKKKN------VQFDLFEKINVNGDNAHPLWKFLKHKQG 156
FPCNQFG QEPG+ +I K F LFEK +VNG+ + FLK+
Sbjct: 75 GFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCP 134
Query: 157 GTL---------------VDAIKWNFTKFIVDKNGVPVER 181
T V I+WNF KF+V +G+P+ R
Sbjct: 135 PTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMR 174
>pdb|2LJA|A Chain A, Solution Structure Of A Putative Thiol-Disulfide
Oxidoreductase From Bacteroides Vulgatus
Length = 152
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 31/61 (50%)
Query: 48 FTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107
F+ +I G+ V L+ KG + I A+ CG L EL+EK+ + + ++ C+
Sbjct: 13 FSYPDINGKTVSLADLKGKYIYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLSCD 72
Query: 108 Q 108
+
Sbjct: 73 K 73
>pdb|2LS5|A Chain A, Solution Structure Of A Putative Protein Disulfide
Isomerase From Bacteroides Thetaiotaomicron
Length = 159
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 42 AETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKH 83
E DFT+ G+ V LS+ +G V+++ AS CG K
Sbjct: 10 GEMAPDFTITLTDGKQVTLSSLRGKVVMLQFTASWCGVCRKE 51
>pdb|1QWR|A Chain A, Crystal Structure Analysis Of The Mannose 6-Phosphate
Isomerase From Bacillus Subtilis
pdb|1QWR|B Chain B, Crystal Structure Analysis Of The Mannose 6-Phosphate
Isomerase From Bacillus Subtilis
Length = 319
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 213 VDKNGAPVERHAANASPASLIPNIEKYL 240
+D NG+P E H A A A+ +P+++ Y+
Sbjct: 203 LDSNGSPRELHFAKAVNAATVPHVDGYI 230
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 172 VDKNGVPVERHAANASPASLIPHIE 196
+D NG P E H A A A+ +PH++
Sbjct: 203 LDSNGSPRELHFAKAVNAATVPHVD 227
>pdb|3KCM|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|B Chain B, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|C Chain C, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|D Chain D, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|E Chain E, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
pdb|3KCM|F Chain F, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 154
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106
DFT+ + GE V LS KG V+++ A+ C + L+ + R L
Sbjct: 10 DFTLNTLNGEVVKLSDLKGQVVIVNFWATWCPPCREEIPSXXRLNAAXAGKPFRXLCVSI 69
Query: 107 NQFG 110
++ G
Sbjct: 70 DEGG 73
>pdb|1X7F|A Chain A, Crystal Structure Of An Uncharacterized B. Cereus Protein
Length = 385
Score = 28.5 bits (62), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/56 (25%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 79 YTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDA-DQICEFTKKKNVQFDL 133
+TG Y + E+F+ G+R AF + P D D +C + +N+ ++
Sbjct: 178 FTGLPYDYFIRCSERFKKHGIRSAAFITSHVANIGPWDINDGLCTLEEHRNLPIEV 233
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
pdb|4A2A|A Chain A, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2A|B Chain B, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2B|A Chain A, Thermotoga Maritima Ftsa With Atp Gamma S
Length = 419
Score = 27.7 bits (60), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 153 HKQGGTLVDAIKWNFTKFIVDKNGVPV 179
K G +V + +NFT I KNGVP+
Sbjct: 203 EKDRGVVVVNLGYNFTGLIAYKNGVPI 229
>pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga Maritima
Length = 419
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 153 HKQGGTLVDAIKWNFTKFIVDKNGVPV 179
K G +V + +NFT I KNGVP+
Sbjct: 203 EKDRGVVVVNLGYNFTGLIAYKNGVPI 229
>pdb|3MZ2|A Chain A, Crystal Structure Of A Glycerophosphoryl Diester
Phosphodiesterase (Bdi_3922) From Parabacteroides
Distasonis Atcc 8503 At 1.55 A Resolution
pdb|3MZ2|B Chain B, Crystal Structure Of A Glycerophosphoryl Diester
Phosphodiesterase (Bdi_3922) From Parabacteroides
Distasonis Atcc 8503 At 1.55 A Resolution
Length = 292
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 158 TLVDAIKWNFTK--FIVDKNGVPVERHAANASPASLIPHIEI 197
TL +AI+W K I+DK VP ER A + P++ I
Sbjct: 121 TLEEAIRWARGKTILILDKKDVPXERTAQLITDXQAEPYVXI 162
>pdb|3OZ7|A Chain A, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
pdb|3OZ7|B Chain B, Crystal Structure Of 3-Phosphopglycerate Kinase Of
Plasmodium Falciparum
Length = 417
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 168 TKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWN 207
TKF+ D+ G+P +A P S+ + +++ + + WN
Sbjct: 299 TKFVTDEEGIPDNWMGLDAGPKSIENYKDVILTSKTVIWN 338
>pdb|1LTK|A Chain A, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|B Chain B, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
pdb|1LTK|C Chain C, Crystal Structure Of Phosphoglycerate Kinase From
Plasmodium Falciparum, In The Open Conformation
Length = 425
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 168 TKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWN 207
TKF+ D+ G+P +A P S+ + +++ + + WN
Sbjct: 306 TKFVTDEEGIPDNWXGLDAGPKSIENYKDVILTSKTVIWN 345
>pdb|3OZA|A Chain A, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|B Chain B, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
pdb|3OZA|C Chain C, Crystal Structure Of Plasmodium Falciparum
3-Phosphoglycerate Kinase
Length = 424
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/40 (27%), Positives = 22/40 (55%)
Query: 168 TKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWN 207
TKF+ D+ G+P +A P S+ + +++ + + WN
Sbjct: 305 TKFVTDEEGIPDNWXGLDAGPKSIENYKDVILTSKTVIWN 344
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,055,546
Number of Sequences: 62578
Number of extensions: 349619
Number of successful extensions: 821
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 59
length of query: 240
length of database: 14,973,337
effective HSP length: 96
effective length of query: 144
effective length of database: 8,965,849
effective search space: 1291082256
effective search space used: 1291082256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)