Query psy299
Match_columns 240
No_of_seqs 123 out of 1352
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 22:40:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy299.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/299hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10606 btuE putative glutath 100.0 8.2E-35 1.8E-39 236.6 15.0 176 43-240 3-181 (183)
2 COG0386 BtuE Glutathione perox 100.0 1.7E-32 3.6E-37 211.1 15.3 157 43-240 3-160 (162)
3 PTZ00056 glutathione peroxidas 100.0 1.8E-31 3.8E-36 220.5 14.9 177 34-210 8-189 (199)
4 PLN02399 phospholipid hydroper 100.0 4.2E-31 9.2E-36 222.3 16.3 163 38-200 72-235 (236)
5 PLN02412 probable glutathione 100.0 2.8E-30 6E-35 207.9 16.7 161 41-201 5-166 (167)
6 KOG1651|consensus 100.0 1.8E-29 3.9E-34 196.6 13.4 160 40-240 9-169 (171)
7 cd00340 GSH_Peroxidase Glutath 100.0 1.5E-28 3.2E-33 194.8 15.0 150 44-194 1-151 (152)
8 PTZ00256 glutathione peroxidas 100.0 6.2E-28 1.3E-32 197.0 16.5 160 41-200 16-182 (183)
9 TIGR02540 gpx7 putative glutat 100.0 9.8E-28 2.1E-32 190.2 15.3 151 45-199 2-153 (153)
10 PF08534 Redoxin: Redoxin; In 99.9 1.8E-24 3.9E-29 169.7 13.3 133 40-187 1-136 (146)
11 cd02969 PRX_like1 Peroxiredoxi 99.9 1.9E-23 4.1E-28 168.4 14.3 146 42-203 1-156 (171)
12 PRK09437 bcp thioredoxin-depen 99.9 9.1E-24 2E-28 167.4 12.1 143 38-196 3-150 (154)
13 PRK15412 thiol:disulfide inter 99.9 7.5E-24 1.6E-28 173.2 11.8 139 38-202 38-179 (185)
14 PF00578 AhpC-TSA: AhpC/TSA fa 99.9 1.3E-23 2.8E-28 159.8 12.3 123 41-181 1-124 (124)
15 PRK03147 thiol-disulfide oxido 99.9 5.9E-23 1.3E-27 165.2 14.2 140 36-198 32-171 (173)
16 cd03017 PRX_BCP Peroxiredoxin 99.9 5.7E-23 1.2E-27 159.7 12.4 138 43-195 1-139 (140)
17 PRK00522 tpx lipid hydroperoxi 99.9 1.4E-22 3.1E-27 163.0 14.8 145 37-197 16-164 (167)
18 COG1225 Bcp Peroxiredoxin [Pos 99.9 1.1E-22 2.3E-27 160.1 13.0 132 38-183 3-137 (157)
19 TIGR03137 AhpC peroxiredoxin. 99.9 9E-23 2E-27 167.1 12.9 144 40-201 3-154 (187)
20 TIGR00385 dsbE periplasmic pro 99.9 1.1E-22 2.3E-27 164.6 11.9 137 38-200 33-172 (173)
21 cd03018 PRX_AhpE_like Peroxire 99.9 3.7E-22 7.9E-27 156.9 14.0 132 39-186 1-134 (149)
22 cd03010 TlpA_like_DsbE TlpA-li 99.9 1.9E-22 4E-27 154.7 10.9 123 43-190 1-125 (127)
23 cd03015 PRX_Typ2cys Peroxiredo 99.9 7.1E-22 1.5E-26 159.7 14.6 128 41-186 1-140 (173)
24 cd03014 PRX_Atyp2cys Peroxired 99.9 8.5E-22 1.8E-26 154.0 13.3 126 41-185 2-129 (143)
25 cd03012 TlpA_like_DipZ_like Tl 99.9 5.7E-22 1.2E-26 152.0 11.5 113 55-185 13-125 (126)
26 TIGR02661 MauD methylamine deh 99.9 1.4E-21 3E-26 160.3 14.4 132 37-197 44-177 (189)
27 cd02968 SCO SCO (an acronym fo 99.9 9.7E-22 2.1E-26 153.1 11.1 133 44-183 1-141 (142)
28 cd02967 mauD Methylamine utili 99.9 3.9E-21 8.4E-26 144.3 12.6 110 46-182 1-112 (114)
29 cd03008 TryX_like_RdCVF Trypar 99.9 1.2E-21 2.6E-26 153.6 9.0 107 56-182 16-129 (146)
30 PRK13190 putative peroxiredoxi 99.9 5.2E-21 1.1E-25 158.5 12.5 160 39-217 2-178 (202)
31 cd02971 PRX_family Peroxiredox 99.9 1.4E-20 3E-25 146.1 13.7 129 44-187 1-131 (140)
32 PRK14018 trifunctional thiored 99.8 1.9E-20 4.1E-25 173.0 15.1 138 39-196 32-170 (521)
33 PRK13599 putative peroxiredoxi 99.8 2.9E-20 6.2E-25 155.2 14.0 142 40-198 3-155 (215)
34 PRK10382 alkyl hydroperoxide r 99.8 3.4E-20 7.4E-25 151.6 13.1 128 39-184 2-137 (187)
35 PLN02919 haloacid dehalogenase 99.8 2.1E-20 4.5E-25 186.7 13.5 147 36-200 388-537 (1057)
36 cd02970 PRX_like2 Peroxiredoxi 99.8 3.3E-20 7.1E-25 145.3 11.5 127 44-184 1-148 (149)
37 cd03016 PRX_1cys Peroxiredoxin 99.8 8.8E-20 1.9E-24 151.2 13.9 158 41-215 1-176 (203)
38 PTZ00137 2-Cys peroxiredoxin; 99.8 7.5E-20 1.6E-24 156.1 13.0 181 22-222 52-254 (261)
39 cd03011 TlpA_like_ScsD_MtbDsbE 99.8 8.4E-20 1.8E-24 138.8 10.8 121 46-194 1-121 (123)
40 PRK13191 putative peroxiredoxi 99.8 2.5E-19 5.5E-24 149.6 14.3 144 38-198 6-160 (215)
41 PRK15000 peroxidase; Provision 99.8 1.7E-19 3.8E-24 149.0 12.8 129 40-186 3-145 (200)
42 cd02964 TryX_like_family Trypa 99.8 1.2E-19 2.7E-24 140.2 9.8 111 52-183 5-117 (132)
43 PRK13189 peroxiredoxin; Provis 99.8 8.5E-19 1.8E-23 147.2 15.2 155 38-210 8-180 (222)
44 TIGR01626 ytfJ_HI0045 conserve 99.8 1E-19 2.3E-24 147.5 9.3 134 37-193 21-174 (184)
45 cd03009 TryX_like_TryX_NRX Try 99.8 1.4E-19 3E-24 139.5 9.1 111 50-182 3-116 (131)
46 cd02966 TlpA_like_family TlpA- 99.8 5.7E-19 1.2E-23 130.7 11.9 116 47-184 1-116 (116)
47 PRK13728 conjugal transfer pro 99.8 3.7E-19 8E-24 143.6 9.3 123 40-201 50-173 (181)
48 PTZ00253 tryparedoxin peroxida 99.8 2E-18 4.4E-23 142.6 13.8 145 39-201 6-163 (199)
49 PF13905 Thioredoxin_8: Thiore 99.8 2.2E-18 4.8E-23 125.3 9.0 94 65-178 1-95 (95)
50 PF02630 SCO1-SenC: SCO1/SenC; 99.8 3.1E-18 6.8E-23 138.6 9.8 137 41-184 28-173 (174)
51 COG1999 Uncharacterized protei 99.7 5.6E-17 1.2E-21 134.6 13.6 148 47-201 49-206 (207)
52 PF00255 GSHPx: Glutathione pe 99.7 3.5E-17 7.6E-22 121.7 10.8 107 45-152 1-108 (108)
53 cd03013 PRX5_like Peroxiredoxi 99.7 8.4E-17 1.8E-21 127.9 12.3 130 41-185 1-140 (155)
54 TIGR02738 TrbB type-F conjugat 99.7 9.9E-17 2.2E-21 127.0 7.8 109 55-199 44-153 (153)
55 COG0450 AhpC Peroxiredoxin [Po 99.7 6.6E-16 1.4E-20 124.4 11.4 143 39-199 3-161 (194)
56 cd02950 TxlA TRX-like protein 99.6 1.2E-15 2.5E-20 119.7 8.0 110 50-203 3-114 (142)
57 KOG2792|consensus 99.5 5.2E-14 1.1E-18 117.3 11.6 144 46-199 120-275 (280)
58 KOG0855|consensus 99.5 9.1E-14 2E-18 108.7 11.3 145 38-199 62-209 (211)
59 cd02985 TRX_CDSP32 TRX family, 99.5 8.1E-14 1.7E-18 103.2 9.4 90 61-196 11-100 (103)
60 cd02963 TRX_DnaJ TRX domain, D 99.4 6E-13 1.3E-17 99.8 8.6 91 62-198 21-111 (111)
61 KOG0910|consensus 99.4 1.1E-12 2.5E-17 101.8 8.3 90 64-200 60-149 (150)
62 cd02948 TRX_NDPK TRX domain, T 99.4 2.1E-12 4.6E-17 95.3 8.9 87 64-198 16-102 (102)
63 cd02951 SoxW SoxW family; SoxW 99.4 2.8E-12 6.1E-17 97.9 9.8 105 64-201 12-121 (125)
64 KOG2501|consensus 99.4 2.1E-12 4.4E-17 101.2 8.5 115 48-182 15-132 (157)
65 TIGR02740 TraF-like TraF-like 99.4 1.6E-12 3.6E-17 112.2 8.7 110 54-200 155-265 (271)
66 cd02953 DsbDgamma DsbD gamma f 99.3 4.4E-12 9.5E-17 93.7 8.3 90 64-195 10-103 (104)
67 cd02999 PDI_a_ERp44_like PDIa 99.3 2.8E-12 6.2E-17 94.4 6.2 43 61-105 14-56 (100)
68 cd02956 ybbN ybbN protein fami 99.3 1.1E-11 2.3E-16 90.1 8.8 86 63-195 10-95 (96)
69 PRK09381 trxA thioredoxin; Pro 99.3 1.5E-11 3.3E-16 91.5 9.5 90 64-200 20-109 (109)
70 PF13098 Thioredoxin_2: Thiore 99.3 8.1E-12 1.8E-16 93.2 5.5 106 64-195 4-112 (112)
71 cd02954 DIM1 Dim1 family; Dim1 99.2 4.8E-11 1E-15 89.6 8.8 79 64-189 13-91 (114)
72 TIGR01295 PedC_BrcD bacterioci 99.2 1.1E-10 2.3E-15 89.1 10.7 88 64-185 22-109 (122)
73 PHA02278 thioredoxin-like prot 99.2 5.2E-11 1.1E-15 88.2 7.9 86 64-192 13-98 (103)
74 COG3118 Thioredoxin domain-con 99.2 2.5E-11 5.4E-16 103.9 6.7 94 61-201 39-132 (304)
75 PRK10996 thioredoxin 2; Provis 99.2 7.5E-11 1.6E-15 92.0 8.4 89 64-199 51-139 (139)
76 cd03003 PDI_a_ERdj5_N PDIa fam 99.2 7.3E-11 1.6E-15 86.6 7.7 83 63-192 16-98 (101)
77 cd02994 PDI_a_TMX PDIa family, 99.2 1.5E-10 3.3E-15 84.8 8.8 85 64-196 16-100 (101)
78 KOG0854|consensus 99.2 1.7E-10 3.7E-15 91.2 8.8 155 37-199 4-168 (224)
79 cd03000 PDI_a_TMX3 PDIa family 99.1 3.2E-10 6.9E-15 83.7 8.9 88 64-198 14-103 (104)
80 PLN00410 U5 snRNP protein, DIM 99.1 4.3E-10 9.2E-15 87.7 9.2 92 64-201 22-122 (142)
81 cd03004 PDI_a_ERdj5_C PDIa fam 99.1 4E-10 8.8E-15 83.0 8.6 84 64-193 18-102 (104)
82 cd02949 TRX_NTR TRX domain, no 99.1 4.8E-10 1E-14 81.8 8.6 85 64-195 12-96 (97)
83 cd03005 PDI_a_ERp46 PDIa famil 99.1 2.3E-10 4.9E-15 83.6 7.0 81 67-193 18-100 (102)
84 TIGR01126 pdi_dom protein disu 99.1 5.4E-10 1.2E-14 81.4 8.4 89 64-198 12-101 (102)
85 cd03002 PDI_a_MPD1_like PDI fa 99.1 5.1E-10 1.1E-14 82.9 7.7 43 64-107 17-59 (109)
86 TIGR01068 thioredoxin thioredo 99.1 1.1E-09 2.5E-14 79.3 9.3 88 65-199 14-101 (101)
87 cd02993 PDI_a_APS_reductase PD 99.1 5.3E-10 1.2E-14 83.4 7.6 45 63-107 19-63 (109)
88 cd03006 PDI_a_EFP1_N PDIa fami 99.1 6.4E-10 1.4E-14 83.7 8.0 43 64-107 28-70 (113)
89 KOG0907|consensus 99.1 7E-10 1.5E-14 82.5 8.0 85 64-197 20-104 (106)
90 cd02959 ERp19 Endoplasmic reti 99.0 3.9E-10 8.4E-15 85.4 5.9 46 61-107 15-60 (117)
91 COG2077 Tpx Peroxiredoxin [Pos 99.0 2.1E-09 4.5E-14 83.2 9.6 129 36-182 15-147 (158)
92 PF00085 Thioredoxin: Thioredo 99.0 2.1E-09 4.6E-14 78.3 9.1 87 64-197 16-102 (103)
93 cd02962 TMX2 TMX2 family; comp 99.0 2.5E-09 5.3E-14 84.6 9.0 82 63-184 45-126 (152)
94 cd02997 PDI_a_PDIR PDIa family 99.0 1.9E-09 4E-14 79.0 6.8 44 64-107 16-60 (104)
95 PTZ00443 Thioredoxin domain-co 99.0 3.5E-09 7.5E-14 88.9 9.1 90 64-200 51-140 (224)
96 cd02996 PDI_a_ERp44 PDIa famil 99.0 4E-09 8.6E-14 78.3 8.5 44 64-107 17-65 (108)
97 cd02984 TRX_PICOT TRX domain, 98.9 5.3E-09 1.1E-13 75.8 8.5 41 65-106 14-54 (97)
98 KOG0852|consensus 98.9 7.3E-09 1.6E-13 82.0 9.7 129 41-187 6-145 (196)
99 PRK00293 dipZ thiol:disulfide 98.9 4.1E-09 8.9E-14 100.0 9.7 96 61-199 470-570 (571)
100 cd02998 PDI_a_ERp38 PDIa famil 98.9 4.3E-09 9.3E-14 77.0 7.3 86 64-193 17-103 (105)
101 cd03065 PDI_b_Calsequestrin_N 98.9 8.6E-09 1.9E-13 78.3 8.9 88 65-199 27-119 (120)
102 cd02955 SSP411 TRX domain, SSP 98.9 1.5E-08 3.4E-13 77.4 10.0 85 63-185 13-100 (124)
103 cd02961 PDI_a_family Protein D 98.9 7.4E-09 1.6E-13 74.5 7.3 84 64-192 14-98 (101)
104 PTZ00051 thioredoxin; Provisio 98.9 1.2E-08 2.6E-13 74.1 7.9 42 64-107 17-58 (98)
105 cd03001 PDI_a_P5 PDIa family, 98.8 2.5E-08 5.4E-13 72.8 8.8 42 65-107 18-59 (103)
106 cd02975 PfPDO_like_N Pyrococcu 98.8 3.8E-08 8.2E-13 74.0 9.5 90 65-201 22-112 (113)
107 cd02957 Phd_like Phosducin (Ph 98.8 3E-08 6.6E-13 74.3 8.6 41 65-107 24-64 (113)
108 cd02965 HyaE HyaE family; HyaE 98.8 2.9E-08 6.3E-13 74.1 8.3 81 64-191 26-108 (111)
109 TIGR00411 redox_disulf_1 small 98.8 4.6E-08 9.9E-13 68.5 8.9 39 68-107 2-40 (82)
110 PTZ00102 disulphide isomerase; 98.8 1.6E-08 3.4E-13 93.7 8.2 107 50-201 359-467 (477)
111 cd02952 TRP14_like Human TRX-r 98.8 2.1E-08 4.6E-13 76.0 6.9 44 63-107 19-69 (119)
112 cd02995 PDI_a_PDI_a'_C PDIa fa 98.7 4.4E-08 9.4E-13 71.5 7.7 43 65-107 18-61 (104)
113 cd02986 DLP Dim1 family, Dim1- 98.7 2.3E-08 5E-13 74.8 5.7 54 64-129 13-66 (114)
114 PF00837 T4_deiodinase: Iodoth 98.7 3.9E-08 8.5E-13 82.2 7.6 140 37-197 71-235 (237)
115 cd02947 TRX_family TRX family; 98.7 9.6E-08 2.1E-12 67.2 8.6 40 66-107 11-50 (93)
116 cd02989 Phd_like_TxnDC9 Phosdu 98.7 1.6E-07 3.4E-12 70.7 10.2 42 64-107 21-62 (113)
117 cd02992 PDI_a_QSOX PDIa family 98.7 1.5E-07 3.2E-12 70.9 9.4 43 65-107 19-63 (114)
118 KOG0908|consensus 98.6 1.8E-07 3.9E-12 78.2 8.7 98 60-207 16-113 (288)
119 TIGR00424 APS_reduc 5'-adenyly 98.6 1.9E-07 4.1E-12 86.0 9.5 45 63-107 369-413 (463)
120 cd02958 UAS UAS family; UAS is 98.6 5.2E-07 1.1E-11 67.7 9.9 95 62-200 14-112 (114)
121 cd02982 PDI_b'_family Protein 98.6 2.8E-07 6E-12 67.4 8.2 42 65-107 12-53 (103)
122 cd02987 Phd_like_Phd Phosducin 98.6 2.3E-07 5.1E-12 75.1 8.3 41 65-107 83-123 (175)
123 TIGR01130 ER_PDI_fam protein d 98.6 2.6E-07 5.7E-12 84.9 9.5 93 64-202 17-112 (462)
124 PF13728 TraF: F plasmid trans 98.5 4.1E-07 8.9E-12 76.0 8.4 100 58-194 113-213 (215)
125 PTZ00062 glutaredoxin; Provisi 98.5 4.6E-07 9.9E-12 75.0 8.5 80 66-202 18-97 (204)
126 PTZ00102 disulphide isomerase; 98.5 6.7E-07 1.5E-11 82.9 9.8 91 64-201 48-140 (477)
127 PRK13703 conjugal pilus assemb 98.5 5.6E-07 1.2E-11 76.5 8.4 107 58-201 136-243 (248)
128 TIGR00412 redox_disulf_2 small 98.5 7.9E-07 1.7E-11 62.0 7.7 35 69-104 2-36 (76)
129 TIGR02739 TraF type-F conjugat 98.5 6.1E-07 1.3E-11 76.6 8.4 107 58-201 143-250 (256)
130 cd02988 Phd_like_VIAF Phosduci 98.5 5.3E-07 1.2E-11 74.1 7.3 42 64-107 101-142 (192)
131 TIGR01130 ER_PDI_fam protein d 98.4 8.5E-07 1.8E-11 81.5 9.2 91 64-201 363-456 (462)
132 PLN02309 5'-adenylylsulfate re 98.4 1E-06 2.2E-11 81.2 9.4 44 64-107 364-407 (457)
133 cd02960 AGR Anterior Gradient 98.4 9.8E-07 2.1E-11 67.8 6.2 25 63-87 21-45 (130)
134 TIGR02187 GlrX_arch Glutaredox 98.3 2.1E-06 4.6E-11 71.7 8.3 94 61-200 15-112 (215)
135 COG0526 TrxA Thiol-disulfide i 98.1 7.8E-06 1.7E-10 59.1 5.7 47 59-106 26-72 (127)
136 KOG0190|consensus 98.1 6.7E-06 1.4E-10 75.9 6.1 114 65-224 42-161 (493)
137 TIGR02187 GlrX_arch Glutaredox 98.1 2.4E-05 5.2E-10 65.3 8.8 42 64-107 132-173 (215)
138 PHA02125 thioredoxin-like prot 98.0 4.4E-05 9.5E-10 52.9 7.4 22 69-90 2-23 (75)
139 cd03026 AhpF_NTD_C TRX-GRX-lik 98.0 5.3E-05 1.1E-09 54.4 7.8 46 60-107 7-52 (89)
140 cd02973 TRX_GRX_like Thioredox 97.9 7.4E-05 1.6E-09 50.2 8.0 38 68-107 2-39 (67)
141 PF04592 SelP_N: Selenoprotein 97.8 0.00035 7.7E-09 58.4 11.9 140 43-206 8-153 (238)
142 PF13899 Thioredoxin_7: Thiore 97.8 0.0001 2.2E-09 51.9 7.5 43 64-107 16-61 (82)
143 cd01659 TRX_superfamily Thiore 97.8 0.00011 2.4E-09 46.9 7.1 37 69-107 1-37 (69)
144 PF05988 DUF899: Bacterial pro 97.8 0.00051 1.1E-08 56.7 11.8 93 35-136 36-136 (211)
145 TIGR02540 gpx7 putative glutat 97.8 2.3E-05 4.9E-10 61.8 3.5 39 202-240 115-153 (153)
146 PF14595 Thioredoxin_9: Thiore 97.8 9.8E-06 2.1E-10 62.4 1.2 83 60-186 36-118 (129)
147 smart00594 UAS UAS domain. 97.7 0.00011 2.3E-09 55.9 6.5 89 63-195 25-121 (122)
148 COG4232 Thiol:disulfide interc 97.4 0.00029 6.3E-09 66.0 6.2 98 60-198 469-567 (569)
149 PLN02399 phospholipid hydroper 97.4 0.00012 2.6E-09 62.0 3.4 39 202-240 196-234 (236)
150 KOG0191|consensus 97.4 0.00089 1.9E-08 60.7 9.3 42 64-106 46-87 (383)
151 COG0386 BtuE Glutathione perox 97.4 0.00023 5E-09 55.7 4.4 40 162-201 123-162 (162)
152 COG0678 AHP1 Peroxiredoxin [Po 97.4 0.0017 3.7E-08 50.7 9.1 85 39-131 3-98 (165)
153 KOG0541|consensus 97.4 0.0011 2.3E-08 52.0 7.8 100 35-144 5-117 (171)
154 PF09695 YtfJ_HI0045: Bacteria 97.3 0.0095 2.1E-07 47.0 12.4 140 40-197 2-156 (160)
155 PTZ00056 glutathione peroxidas 97.2 0.00023 4.9E-09 58.8 3.0 37 203-239 141-177 (199)
156 TIGR02196 GlrX_YruB Glutaredox 97.2 0.0015 3.2E-08 43.9 6.6 46 69-128 2-47 (74)
157 COG2143 Thioredoxin-related pr 97.2 0.0045 9.7E-08 48.7 9.8 104 61-196 38-146 (182)
158 cd02991 UAS_ETEA UAS family, E 97.2 0.0032 6.9E-08 47.5 8.5 93 62-201 14-115 (116)
159 PF05176 ATP-synt_10: ATP10 pr 97.1 0.01 2.2E-07 50.9 11.9 137 41-196 97-247 (252)
160 KOG0190|consensus 97.1 0.00057 1.2E-08 63.3 4.2 41 64-104 383-424 (493)
161 KOG0912|consensus 97.0 0.0014 3E-08 56.9 5.9 117 65-229 13-140 (375)
162 PTZ00256 glutathione peroxidas 97.0 0.00061 1.3E-08 55.4 3.4 39 202-240 143-181 (183)
163 PF13911 AhpC-TSA_2: AhpC/TSA 96.9 0.005 1.1E-07 45.9 7.7 83 87-183 2-112 (115)
164 cd03007 PDI_a_ERp29_N PDIa fam 96.9 0.0048 1E-07 46.5 7.2 63 64-134 17-84 (116)
165 PLN02412 probable glutathione 96.9 0.00096 2.1E-08 53.5 3.4 39 202-240 126-164 (167)
166 KOG1731|consensus 96.8 0.00066 1.4E-08 63.3 2.0 60 66-134 58-120 (606)
167 KOG1651|consensus 96.7 0.002 4.3E-08 51.1 3.9 99 67-201 68-171 (171)
168 PF06110 DUF953: Eukaryotic pr 96.6 0.0071 1.5E-07 45.8 6.2 44 63-107 17-67 (119)
169 TIGR02200 GlrX_actino Glutared 96.6 0.0051 1.1E-07 41.9 4.9 32 69-107 2-33 (77)
170 PRK10606 btuE putative glutath 96.5 0.004 8.8E-08 50.7 4.6 40 161-200 141-182 (183)
171 PF03190 Thioredox_DsbH: Prote 96.4 0.0077 1.7E-07 48.1 5.6 82 64-183 36-120 (163)
172 TIGR02180 GRX_euk Glutaredoxin 96.4 0.0064 1.4E-07 42.2 4.5 36 69-107 1-36 (84)
173 cd03019 DsbA_DsbA DsbA family, 96.4 0.017 3.6E-07 46.0 7.5 41 64-105 14-54 (178)
174 cd00340 GSH_Peroxidase Glutath 96.4 0.0031 6.8E-08 49.5 3.1 34 202-235 118-151 (152)
175 PRK11657 dsbG disulfide isomer 96.3 0.037 7.9E-07 47.4 9.6 30 64-93 116-145 (251)
176 PRK11200 grxA glutaredoxin 1; 96.3 0.014 3.1E-07 41.0 5.9 37 69-107 3-39 (85)
177 PRK11509 hydrogenase-1 operon 96.2 0.06 1.3E-06 41.5 9.3 82 77-204 48-129 (132)
178 COG4312 Uncharacterized protei 96.2 0.085 1.8E-06 43.8 10.7 81 47-136 54-142 (247)
179 PRK10877 protein disulfide iso 96.2 0.037 8E-07 46.8 8.8 37 64-104 106-142 (232)
180 PF13192 Thioredoxin_3: Thiore 96.1 0.023 5.1E-07 39.2 6.1 31 73-104 6-36 (76)
181 PF13778 DUF4174: Domain of un 95.6 0.14 3.1E-06 38.5 9.0 106 59-197 2-110 (118)
182 PRK10954 periplasmic protein d 95.6 0.045 9.7E-07 45.3 6.7 42 64-106 36-80 (207)
183 cd03023 DsbA_Com1_like DsbA fa 95.4 0.03 6.6E-07 43.1 4.8 42 64-105 4-45 (154)
184 KOG4277|consensus 95.1 0.031 6.8E-07 48.6 4.4 36 66-101 44-79 (468)
185 cd03020 DsbA_DsbC_DsbG DsbA fa 95.1 0.1 2.2E-06 42.6 7.3 45 60-107 72-116 (197)
186 PF00462 Glutaredoxin: Glutare 94.8 0.1 2.2E-06 34.0 5.5 32 69-107 1-32 (60)
187 cd02976 NrdH NrdH-redoxin (Nrd 94.8 0.14 2.9E-06 33.9 6.3 32 69-107 2-33 (73)
188 KOG3425|consensus 94.7 0.055 1.2E-06 40.7 4.2 43 64-107 24-74 (128)
189 cd03418 GRX_GRXb_1_3_like Glut 94.7 0.15 3.2E-06 34.5 6.2 46 69-128 2-47 (75)
190 KOG0191|consensus 94.3 0.14 3E-06 46.4 6.8 42 65-106 162-204 (383)
191 TIGR02183 GRXA Glutaredoxin, G 94.1 0.17 3.6E-06 35.8 5.6 37 69-107 2-38 (86)
192 cd02066 GRX_family Glutaredoxi 94.0 0.19 4.1E-06 33.0 5.5 32 69-107 2-33 (72)
193 TIGR01626 ytfJ_HI0045 conserve 93.9 0.051 1.1E-06 44.3 2.9 50 169-238 128-181 (184)
194 PF13462 Thioredoxin_4: Thiore 93.8 0.15 3.3E-06 39.6 5.4 48 58-106 5-54 (162)
195 PRK10329 glutaredoxin-like pro 93.4 0.35 7.5E-06 33.8 6.1 32 69-107 3-34 (81)
196 TIGR02181 GRX_bact Glutaredoxi 93.0 0.29 6.3E-06 33.5 5.3 21 69-89 1-21 (79)
197 KOG4498|consensus 92.9 0.58 1.2E-05 38.1 7.4 55 51-105 35-91 (197)
198 COG1225 Bcp Peroxiredoxin [Pos 92.7 0.16 3.5E-06 40.2 3.9 63 167-238 88-154 (157)
199 COG0695 GrxC Glutaredoxin and 92.5 0.56 1.2E-05 32.7 6.1 53 69-134 3-57 (80)
200 cd03027 GRX_DEP Glutaredoxin ( 92.4 0.68 1.5E-05 31.2 6.4 32 69-107 3-34 (73)
201 TIGR00385 dsbE periplasmic pro 92.3 0.15 3.2E-06 40.8 3.3 50 170-239 121-170 (173)
202 cd03419 GRX_GRXh_1_2_like Glut 92.3 0.32 6.9E-06 33.3 4.7 34 69-107 2-35 (82)
203 PRK15412 thiol:disulfide inter 92.2 0.13 2.8E-06 41.7 2.9 49 170-238 126-174 (185)
204 TIGR02190 GlrX-dom Glutaredoxi 92.1 0.43 9.4E-06 32.9 5.2 35 66-107 7-41 (79)
205 TIGR02194 GlrX_NrdH Glutaredox 92.0 0.58 1.3E-05 31.6 5.6 31 70-107 2-32 (72)
206 KOG0914|consensus 91.9 0.17 3.6E-06 42.2 3.2 45 61-105 140-184 (265)
207 TIGR03143 AhpF_homolog putativ 91.7 0.71 1.5E-05 44.0 7.7 38 65-104 476-513 (555)
208 PHA03050 glutaredoxin; Provisi 91.2 0.44 9.6E-06 35.3 4.6 22 69-90 15-36 (108)
209 PRK09437 bcp thioredoxin-depen 91.2 0.8 1.7E-05 35.5 6.4 29 209-238 122-150 (154)
210 PF08534 Redoxin: Redoxin; In 91.0 0.52 1.1E-05 36.2 5.1 51 168-229 87-137 (146)
211 PF02114 Phosducin: Phosducin; 91.0 1.3 2.8E-05 38.2 8.0 41 64-106 145-185 (265)
212 cd03015 PRX_Typ2cys Peroxiredo 90.8 0.21 4.6E-06 39.8 2.8 58 167-238 94-155 (173)
213 cd02977 ArsC_family Arsenate R 90.6 1.5 3.2E-05 31.9 7.0 49 70-129 2-50 (105)
214 TIGR02189 GlrX-like_plant Glut 90.5 0.77 1.7E-05 33.3 5.3 21 69-89 10-30 (99)
215 cd03017 PRX_BCP Peroxiredoxin 90.4 1.1 2.5E-05 33.8 6.5 27 209-235 112-138 (140)
216 cd03028 GRX_PICOT_like Glutare 88.6 1.9 4.1E-05 30.5 6.1 37 64-107 6-46 (90)
217 PRK10638 glutaredoxin 3; Provi 88.6 1.9 4.2E-05 29.8 6.0 32 69-107 4-35 (83)
218 TIGR00365 monothiol glutaredox 88.4 2.2 4.9E-05 30.7 6.4 36 65-107 11-50 (97)
219 KOG0911|consensus 88.1 0.41 8.8E-06 40.0 2.6 42 64-107 16-57 (227)
220 PRK10382 alkyl hydroperoxide r 88.1 0.44 9.6E-06 38.9 2.8 57 167-237 93-153 (187)
221 cd03036 ArsC_like Arsenate Red 88.0 1.2 2.7E-05 32.9 4.9 51 70-131 2-52 (111)
222 cd03029 GRX_hybridPRX5 Glutare 87.6 2.4 5.2E-05 28.3 5.8 32 69-107 3-34 (72)
223 TIGR01617 arsC_related transcr 87.3 1.3 2.8E-05 33.1 4.7 51 70-131 2-52 (117)
224 PRK10026 arsenate reductase; P 87.2 9.4 0.0002 29.7 9.6 50 69-129 4-53 (141)
225 PF00578 AhpC-TSA: AhpC/TSA fa 87.2 0.98 2.1E-05 33.3 4.0 42 167-222 83-124 (124)
226 PRK00522 tpx lipid hydroperoxi 86.9 0.6 1.3E-05 37.2 2.8 30 209-238 133-167 (167)
227 PF01323 DSBA: DSBA-like thior 86.9 1.3 2.7E-05 35.5 4.8 40 68-107 1-40 (193)
228 PF11009 DUF2847: Protein of u 86.7 3.9 8.6E-05 30.2 6.8 58 64-129 18-75 (105)
229 cd02983 P5_C P5 family, C-term 86.4 2.5 5.4E-05 32.3 6.0 93 66-202 21-118 (130)
230 KOG3414|consensus 85.7 2.7 5.8E-05 32.1 5.5 56 64-131 22-77 (142)
231 PF13778 DUF4174: Domain of un 84.9 1.9 4.2E-05 32.4 4.6 48 190-239 64-111 (118)
232 PRK03147 thiol-disulfide oxido 84.8 1.1 2.3E-05 35.3 3.3 50 168-237 120-169 (173)
233 cd02969 PRX_like1 Peroxiredoxi 84.7 0.75 1.6E-05 36.5 2.4 51 168-238 91-150 (171)
234 cd03035 ArsC_Yffb Arsenate Red 84.6 2.5 5.4E-05 31.0 5.0 49 70-129 2-50 (105)
235 cd03032 ArsC_Spx Arsenate Redu 84.5 3.1 6.8E-05 30.9 5.6 52 69-131 2-53 (115)
236 cd02972 DsbA_family DsbA famil 84.4 1.3 2.9E-05 30.5 3.4 38 69-107 1-38 (98)
237 PRK01655 spxA transcriptional 84.0 2.5 5.3E-05 32.4 4.9 51 69-130 2-52 (131)
238 COG1651 DsbG Protein-disulfide 83.5 3.3 7.2E-05 34.7 6.0 55 50-104 69-123 (244)
239 PRK10824 glutaredoxin-4; Provi 83.4 3.7 8E-05 30.8 5.5 26 65-90 14-43 (115)
240 PHA03075 glutaredoxin-like pro 83.3 0.95 2.1E-05 33.9 2.2 39 66-104 2-40 (123)
241 cd03012 TlpA_like_DipZ_like Tl 83.1 0.78 1.7E-05 34.4 1.8 35 170-224 89-123 (126)
242 PRK12559 transcriptional regul 81.9 3.4 7.4E-05 31.6 5.0 51 69-130 2-52 (131)
243 PF04278 Tic22: Tic22-like fam 81.7 21 0.00046 30.9 10.4 59 43-107 73-136 (274)
244 TIGR03759 conj_TIGR03759 integ 81.4 4.3 9.3E-05 33.4 5.5 57 66-134 109-165 (200)
245 cd03010 TlpA_like_DsbE TlpA-li 80.9 1.5 3.2E-05 32.7 2.6 39 170-228 84-122 (127)
246 KOG0913|consensus 80.0 0.41 8.8E-06 40.3 -0.8 37 65-102 40-76 (248)
247 PRK13190 putative peroxiredoxi 79.1 1.5 3.3E-05 36.0 2.4 58 167-238 91-152 (202)
248 PRK13191 putative peroxiredoxi 78.5 1.8 3.9E-05 36.1 2.6 59 167-238 97-159 (215)
249 PLN03098 LPA1 LOW PSII ACCUMUL 77.8 18 0.00039 33.6 9.0 68 40-108 271-338 (453)
250 PRK15000 peroxidase; Provision 77.8 1.8 3.9E-05 35.6 2.4 57 167-237 99-159 (200)
251 cd02970 PRX_like2 Peroxiredoxi 77.2 17 0.00037 27.3 7.7 16 209-224 132-147 (149)
252 PRK13344 spxA transcriptional 77.1 6.6 0.00014 30.1 5.2 51 70-131 3-53 (132)
253 TIGR03143 AhpF_homolog putativ 76.9 13 0.00029 35.4 8.3 42 60-103 361-402 (555)
254 cd03073 PDI_b'_ERp72_ERp57 PDI 76.4 27 0.00058 25.8 8.2 24 81-105 34-58 (111)
255 PRK15317 alkyl hydroperoxide r 76.3 5.7 0.00012 37.5 5.6 54 64-130 115-168 (517)
256 PF02743 Cache_1: Cache domain 76.2 2.4 5.2E-05 29.0 2.3 57 170-230 20-76 (81)
257 PF05768 DUF836: Glutaredoxin- 75.2 3.8 8.2E-05 28.4 3.2 52 69-134 2-53 (81)
258 COG4545 Glutaredoxin-related p 74.7 4.7 0.0001 27.9 3.3 43 70-126 5-47 (85)
259 PF13848 Thioredoxin_6: Thiore 74.2 9.2 0.0002 30.0 5.6 41 65-106 94-135 (184)
260 COG1331 Highly conserved prote 74.0 18 0.00038 35.3 8.1 21 64-84 42-62 (667)
261 PF06053 DUF929: Domain of unk 73.0 4.9 0.00011 34.3 3.8 34 63-96 56-89 (249)
262 TIGR03137 AhpC peroxiredoxin. 72.2 3.4 7.3E-05 33.5 2.6 57 168-238 94-154 (187)
263 KOG1752|consensus 71.3 14 0.0003 27.2 5.5 45 69-125 16-60 (104)
264 PF08821 CGGC: CGGC domain; I 71.1 18 0.00038 26.8 6.0 73 53-129 23-100 (107)
265 cd02966 TlpA_like_family TlpA- 69.7 4.7 0.0001 28.3 2.7 16 209-224 100-115 (116)
266 PRK13599 putative peroxiredoxi 69.6 4.5 9.7E-05 33.7 2.9 59 167-238 92-154 (215)
267 cd03018 PRX_AhpE_like Peroxire 69.5 4.6 0.0001 30.8 2.8 19 209-227 116-134 (149)
268 PF09695 YtfJ_HI0045: Bacteria 69.1 14 0.0003 29.4 5.3 50 168-236 105-154 (160)
269 TIGR03140 AhpF alkyl hydropero 68.2 11 0.00025 35.4 5.6 54 64-130 116-169 (515)
270 cd03011 TlpA_like_ScsD_MtbDsbE 68.1 5.4 0.00012 29.3 2.8 46 169-235 76-121 (123)
271 PTZ00062 glutaredoxin; Provisi 68.1 18 0.0004 29.9 6.1 36 65-107 112-151 (204)
272 COG0450 AhpC Peroxiredoxin [Po 68.0 3.9 8.6E-05 33.5 2.1 42 167-222 98-139 (194)
273 PTZ00137 2-Cys peroxiredoxin; 66.6 5.3 0.00012 34.4 2.8 56 168-238 164-223 (261)
274 COG2179 Predicted hydrolase of 64.7 18 0.0004 29.0 5.2 59 66-132 29-88 (175)
275 PRK14018 trifunctional thiored 64.2 4.4 9.5E-05 38.4 2.0 48 170-237 123-170 (521)
276 PRK12759 bifunctional gluaredo 64.0 14 0.00031 33.9 5.2 32 69-107 4-35 (410)
277 cd02971 PRX_family Peroxiredox 63.8 8 0.00017 28.9 3.1 56 168-234 82-137 (140)
278 COG1999 Uncharacterized protei 63.5 7.2 0.00016 32.3 2.9 33 207-239 171-203 (207)
279 PF02966 DIM1: Mitosis protein 63.3 8.7 0.00019 29.5 3.1 42 64-106 19-60 (133)
280 cd03014 PRX_Atyp2cys Peroxired 62.8 6.6 0.00014 29.8 2.5 16 209-224 112-127 (143)
281 cd03033 ArsC_15kD Arsenate Red 62.5 24 0.00052 26.2 5.4 49 70-129 3-51 (113)
282 cd02968 SCO SCO (an acronym fo 62.2 6.9 0.00015 29.4 2.5 16 209-224 126-141 (142)
283 cd03072 PDI_b'_ERp44 PDIb' fam 61.5 54 0.0012 24.1 7.1 35 167-201 75-110 (111)
284 TIGR02738 TrbB type-F conjugat 61.3 8.7 0.00019 30.2 2.9 32 209-240 121-153 (153)
285 PF08496 Peptidase_S49_N: Pept 60.9 13 0.00029 29.3 3.9 57 167-229 98-154 (155)
286 cd03016 PRX_1cys Peroxiredoxin 59.8 8.9 0.00019 31.5 2.8 60 167-238 89-152 (203)
287 KOG2792|consensus 59.3 5.8 0.00013 34.0 1.6 32 207-238 242-273 (280)
288 TIGR00014 arsC arsenate reduct 58.8 27 0.00058 25.8 5.1 50 70-130 2-51 (114)
289 COG1393 ArsC Arsenate reductas 58.8 41 0.00088 25.2 6.0 52 69-131 3-54 (117)
290 KOG4614|consensus 58.5 13 0.00029 31.5 3.6 27 168-194 250-276 (287)
291 TIGR02661 MauD methylamine deh 58.3 7.5 0.00016 31.5 2.1 29 209-237 149-179 (189)
292 PF13426 PAS_9: PAS domain; PD 57.4 33 0.00071 23.3 5.2 51 169-220 4-76 (104)
293 COG2761 FrnE Predicted dithiol 57.4 23 0.0005 29.8 4.9 79 115-202 138-216 (225)
294 PRK10853 putative reductase; P 56.7 26 0.00056 26.2 4.7 51 69-130 2-52 (118)
295 KOG0855|consensus 56.1 15 0.00033 29.5 3.4 58 165-235 146-203 (211)
296 PRK13728 conjugal transfer pro 54.1 12 0.00026 30.4 2.6 30 209-238 139-169 (181)
297 KOG2507|consensus 53.8 28 0.00061 32.1 5.1 42 163-204 75-116 (506)
298 PF08235 LNS2: LNS2 (Lipin/Ned 53.5 27 0.00058 27.7 4.4 65 50-127 3-67 (157)
299 PTZ00253 tryparedoxin peroxida 53.0 13 0.00029 30.3 2.8 45 167-225 101-145 (199)
300 COG1651 DsbG Protein-disulfide 51.2 5.1 0.00011 33.6 0.0 29 65-93 118-146 (244)
301 PF05673 DUF815: Protein of un 50.7 92 0.002 26.7 7.5 90 68-172 55-144 (249)
302 PF03640 Lipoprotein_15: Secre 50.3 17 0.00036 22.7 2.3 21 209-229 9-29 (48)
303 cd03034 ArsC_ArsC Arsenate Red 49.2 49 0.0011 24.3 5.1 50 70-130 2-51 (112)
304 PRK13189 peroxiredoxin; Provis 48.1 17 0.00037 30.3 2.8 58 168-238 100-161 (222)
305 COG1535 EntB Isochorismate hyd 47.1 34 0.00074 27.9 4.1 37 69-105 42-78 (218)
306 PF08789 PBCV_basic_adap: PBCV 46.6 40 0.00088 20.3 3.4 28 172-222 4-31 (40)
307 TIGR01616 nitro_assoc nitrogen 45.4 60 0.0013 24.6 5.2 49 69-128 3-51 (126)
308 PF03544 TonB_C: Gram-negative 44.9 15 0.00032 24.6 1.6 42 169-214 21-63 (79)
309 TIGR00995 3a0901s06TIC22 chlor 44.6 56 0.0012 28.3 5.4 76 42-134 79-157 (270)
310 PLN02919 haloacid dehalogenase 43.9 16 0.00035 37.8 2.3 30 209-238 505-534 (1057)
311 PRK03996 proteasome subunit al 43.5 80 0.0017 26.4 6.2 56 167-222 148-226 (241)
312 TIGR01753 flav_short flavodoxi 41.8 91 0.002 23.1 5.8 14 117-130 99-112 (140)
313 COG3054 Predicted transcriptio 40.6 42 0.00091 26.6 3.6 142 37-194 21-175 (184)
314 COG4098 comFA Superfamily II D 39.7 1.4E+02 0.003 27.2 7.1 58 63-134 303-374 (441)
315 COG3019 Predicted metal-bindin 39.3 95 0.0021 24.2 5.3 46 68-131 27-72 (149)
316 cd02985 TRX_CDSP32 TRX family, 38.6 28 0.00061 24.9 2.3 30 209-239 73-102 (103)
317 KOG3363|consensus 37.6 2E+02 0.0043 23.1 7.0 100 74-201 87-189 (196)
318 COG3411 Ferredoxin [Energy pro 36.9 49 0.0011 22.1 3.0 31 167-202 18-48 (64)
319 cd02950 TxlA TRX-like protein 36.4 36 0.00078 26.1 2.8 31 209-239 79-109 (142)
320 COG2607 Predicted ATPase (AAA+ 36.1 1.7E+02 0.0037 25.3 6.8 74 86-172 101-177 (287)
321 COG5030 APS2 Clathrin adaptor 35.6 78 0.0017 24.6 4.3 52 168-222 4-60 (152)
322 cd03024 DsbA_FrnE DsbA family, 35.3 1.6E+02 0.0035 23.3 6.7 36 72-107 4-42 (201)
323 PLN02640 glucose-6-phosphate 1 35.2 1.7E+02 0.0036 28.3 7.4 43 66-108 88-131 (573)
324 PF03960 ArsC: ArsC family; I 35.1 80 0.0017 22.9 4.3 49 72-131 1-49 (110)
325 COG1636 Uncharacterized protei 34.8 92 0.002 25.6 4.9 51 75-131 10-63 (204)
326 PF12017 Tnp_P_element: Transp 34.2 99 0.0021 26.2 5.2 25 84-108 195-219 (236)
327 PRK14324 glmM phosphoglucosami 33.7 2.6E+02 0.0057 25.8 8.5 37 98-134 199-240 (446)
328 cd02958 UAS UAS family; UAS is 33.7 39 0.00085 24.5 2.5 30 209-238 79-109 (114)
329 cd03008 TryX_like_RdCVF Trypar 33.5 21 0.00046 27.8 1.0 20 209-228 115-134 (146)
330 PF02630 SCO1-SenC: SCO1/SenC; 33.3 28 0.00061 27.7 1.7 18 208-225 156-173 (174)
331 cd03025 DsbA_FrnE_like DsbA fa 33.0 53 0.0011 26.0 3.4 38 69-106 3-41 (193)
332 PF01106 NifU: NifU-like domai 32.9 88 0.0019 20.9 3.9 34 53-87 14-47 (68)
333 cd03060 GST_N_Omega_like GST_N 32.6 46 0.00099 21.8 2.5 30 71-105 3-32 (71)
334 PF10281 Ish1: Putative stress 32.3 54 0.0012 19.1 2.5 20 114-133 3-22 (38)
335 PRK05778 2-oxoglutarate ferred 32.2 46 0.001 29.3 3.0 22 74-96 18-39 (301)
336 TIGR01686 FkbH FkbH-like domai 31.9 3.5E+02 0.0076 23.6 9.2 36 83-126 32-67 (320)
337 cd03084 phosphohexomutase The 31.9 2.7E+02 0.0058 24.7 8.0 21 215-235 217-237 (355)
338 PF14427 Pput2613-deam: Pput_2 31.9 70 0.0015 23.8 3.4 42 57-104 58-99 (118)
339 PF04723 GRDA: Glycine reducta 31.6 44 0.00096 25.9 2.4 40 68-107 31-77 (150)
340 KOG2961|consensus 31.4 2.7E+02 0.0059 22.2 7.4 102 44-151 21-130 (190)
341 cd05805 MPG1_transferase GTP-m 31.3 3.2E+02 0.0068 25.1 8.6 20 215-234 270-289 (441)
342 TIGR01352 tonB_Cterm TonB fami 31.1 42 0.0009 22.0 2.1 30 209-238 14-48 (74)
343 cd03031 GRX_GRX_like Glutaredo 31.0 2.1E+02 0.0045 22.3 6.3 14 76-89 15-28 (147)
344 PRK09542 manB phosphomannomuta 30.7 3.2E+02 0.0069 25.2 8.5 21 215-235 268-288 (445)
345 PRK13398 3-deoxy-7-phosphohept 30.5 1.1E+02 0.0025 26.3 5.1 150 77-237 32-192 (266)
346 PF14943 MRP-S26: Mitochondria 30.2 48 0.001 26.6 2.6 33 184-220 138-170 (170)
347 COG0552 FtsY Signal recognitio 29.7 3.7E+02 0.008 24.2 8.2 128 64-215 136-267 (340)
348 PRK13265 glycine/sarcosine/bet 29.1 44 0.00096 25.9 2.1 38 68-105 32-76 (154)
349 PRK14316 glmM phosphoglucosami 29.0 3.6E+02 0.0077 24.8 8.5 20 115-134 219-238 (448)
350 TIGR02177 PorB_KorB 2-oxoacid: 29.0 58 0.0012 28.5 3.1 21 75-96 2-22 (287)
351 PF02831 gpW: gpW; InterPro: 28.9 23 0.0005 23.9 0.5 43 190-238 9-52 (68)
352 PF13021 DUF3885: Domain of un 28.6 62 0.0013 19.2 2.2 24 94-128 4-27 (38)
353 PRK15126 thiamin pyrimidine py 28.5 3.5E+02 0.0077 22.6 10.2 39 88-134 25-63 (272)
354 PF09419 PGP_phosphatase: Mito 28.2 2.9E+02 0.0062 22.1 6.7 88 41-131 14-109 (168)
355 PRK10887 glmM phosphoglucosami 28.1 3.7E+02 0.0081 24.7 8.5 19 116-134 218-236 (443)
356 COG3916 LasI N-acyl-L-homoseri 28.1 1.6E+02 0.0035 24.5 5.3 48 168-215 53-108 (209)
357 cd05802 GlmM GlmM is a bacteri 27.8 3.9E+02 0.0084 24.5 8.5 20 115-134 215-234 (434)
358 KOG0780|consensus 27.5 5.1E+02 0.011 24.1 9.2 64 59-132 93-160 (483)
359 TIGR03633 arc_protsome_A prote 27.1 2.5E+02 0.0054 23.1 6.5 59 167-225 141-222 (224)
360 cd03051 GST_N_GTT2_like GST_N 26.8 65 0.0014 20.7 2.4 19 71-89 3-21 (74)
361 PF06764 DUF1223: Protein of u 26.8 3E+02 0.0065 22.7 6.8 35 72-109 5-39 (202)
362 PRK14315 glmM phosphoglucosami 26.6 4.4E+02 0.0095 24.3 8.7 19 116-134 223-241 (448)
363 cd03040 GST_N_mPGES2 GST_N fam 26.4 61 0.0013 21.4 2.3 20 70-89 3-22 (77)
364 PRK14323 glmM phosphoglucosami 26.3 3.7E+02 0.0079 24.7 8.1 20 115-134 219-238 (440)
365 PF14062 DUF4253: Domain of un 26.1 1E+02 0.0022 22.8 3.6 48 76-126 25-75 (111)
366 COG0561 Cof Predicted hydrolas 25.9 3.9E+02 0.0084 22.2 8.4 44 83-134 21-64 (264)
367 COG0810 TonB Periplasmic prote 25.7 38 0.00082 28.6 1.3 32 207-238 182-218 (244)
368 PRK12702 mannosyl-3-phosphogly 25.4 4.8E+02 0.01 23.1 8.2 39 89-135 25-63 (302)
369 TIGR01455 glmM phosphoglucosam 25.2 4.6E+02 0.01 24.1 8.5 9 170-178 246-254 (443)
370 PF04134 DUF393: Protein of un 25.0 48 0.001 24.0 1.6 31 72-105 2-32 (114)
371 PRK10696 tRNA 2-thiocytidine b 24.9 4.2E+02 0.009 22.4 7.7 66 64-134 28-93 (258)
372 PF10138 vWA-TerF-like: vWA fo 24.6 4E+02 0.0087 22.0 10.6 115 78-211 21-141 (200)
373 PRK09381 trxA thioredoxin; Pro 24.4 70 0.0015 22.7 2.4 32 209-240 77-108 (109)
374 PRK10976 putative hydrolase; P 24.3 4.2E+02 0.0091 22.0 9.4 39 88-134 25-63 (266)
375 cd08155 catalase_clade_2 Clade 24.1 1.1E+02 0.0024 28.6 4.1 59 167-225 158-236 (443)
376 TIGR01662 HAD-SF-IIIA HAD-supe 24.0 2.9E+02 0.0062 20.2 5.9 47 84-132 27-75 (132)
377 TIGR03634 arc_protsome_B prote 23.9 2.5E+02 0.0054 22.2 5.8 16 203-218 170-185 (185)
378 PF00875 DNA_photolyase: DNA p 23.4 1.6E+02 0.0035 22.7 4.6 42 84-133 52-93 (165)
379 PRK01018 50S ribosomal protein 23.4 2.1E+02 0.0045 20.5 4.7 43 88-134 22-64 (99)
380 PRK14314 glmM phosphoglucosami 23.3 4.4E+02 0.0095 24.3 8.0 18 116-133 224-241 (450)
381 cd08154 catalase_clade_1 Clade 23.1 1.3E+02 0.0027 28.4 4.3 59 167-225 193-271 (469)
382 cd03041 GST_N_2GST_N GST_N fam 22.9 63 0.0014 21.6 1.8 20 70-89 3-22 (77)
383 PRK06756 flavodoxin; Provision 22.8 2.6E+02 0.0056 21.1 5.5 13 118-130 104-116 (148)
384 PF09654 DUF2396: Protein of u 22.5 25 0.00055 27.2 -0.3 15 75-89 7-21 (161)
385 cd03087 PGM_like1 This archaea 22.5 6E+02 0.013 23.2 8.9 21 215-235 266-286 (439)
386 TIGR02652 conserved hypothetic 22.5 26 0.00056 27.2 -0.3 15 75-89 10-24 (163)
387 KOG2603|consensus 22.2 4.5E+02 0.0097 23.4 7.2 51 47-97 42-96 (331)
388 PTZ00246 proteasome subunit al 22.1 2.1E+02 0.0045 24.2 5.2 51 167-217 145-219 (253)
389 cd00570 GST_N_family Glutathio 22.1 91 0.002 19.1 2.4 30 71-105 3-32 (71)
390 PF07411 DUF1508: Domain of un 22.0 1.4E+02 0.003 18.5 3.1 33 167-199 6-38 (49)
391 PRK11675 LexA regulated protei 22.0 2E+02 0.0043 20.6 4.2 48 77-130 26-75 (90)
392 COG3769 Predicted hydrolase (H 21.9 2.2E+02 0.0049 24.2 5.1 64 43-134 4-68 (274)
393 PF14307 Glyco_tran_WbsX: Glyc 21.4 1.8E+02 0.004 25.8 4.9 43 64-106 157-199 (345)
394 PRK11869 2-oxoacid ferredoxin 21.3 1E+02 0.0022 26.9 3.1 22 74-96 8-29 (280)
395 TIGR00099 Cof-subfamily Cof su 21.1 4.8E+02 0.01 21.6 10.3 39 88-134 22-60 (256)
396 cd02979 PHOX_C FAD-dependent P 21.0 4.2E+02 0.0091 20.9 10.6 51 42-94 1-55 (167)
397 PRK11867 2-oxoglutarate ferred 21.0 70 0.0015 27.9 2.1 22 73-95 16-37 (286)
398 PF09494 Slx4: Slx4 endonuclea 20.9 2E+02 0.0043 18.8 3.9 35 87-131 27-61 (64)
399 PLN02609 catalase 20.9 1.4E+02 0.003 28.3 4.1 59 167-225 208-286 (492)
400 TIGR02801 tolR TolR protein. T 20.8 2.8E+02 0.0062 20.5 5.2 58 167-236 51-113 (129)
401 PRK12359 flavodoxin FldB; Prov 20.6 3.4E+02 0.0074 21.6 5.9 13 119-131 103-115 (172)
402 PF12396 DUF3659: Protein of u 20.6 1.5E+02 0.0033 19.7 3.2 42 170-222 14-55 (64)
403 cd08156 catalase_clade_3 Clade 20.6 1.7E+02 0.0038 27.1 4.6 59 167-225 151-229 (429)
404 PRK14318 glmM phosphoglucosami 20.3 6.8E+02 0.015 23.0 8.6 10 170-179 249-258 (448)
405 PRK10530 pyridoxal phosphate ( 20.3 5E+02 0.011 21.5 9.4 39 88-134 26-64 (272)
406 KOG1672|consensus 20.3 5.1E+02 0.011 21.5 7.5 41 64-106 83-123 (211)
407 PF08394 Arc_trans_TRASH: Arch 20.1 1E+02 0.0022 18.2 2.0 22 64-85 9-34 (37)
No 1
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=100.00 E-value=8.2e-35 Score=236.63 Aligned_cols=176 Identities=34% Similarity=0.650 Sum_probs=145.6
Q ss_pred cccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHH
Q psy299 43 ETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICE 122 (240)
Q Consensus 43 ~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~ 122 (240)
..+++|+++|++|+.++|++++||++||+|||+||+.|. +++.|++++++|+++|+.|++|+++.++.+++++.+++++
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~GKvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ei~~ 81 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAGNVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDEEIKT 81 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCCCEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHHHHHH
Confidence 468999999999999999999999999999999999996 7999999999999999999999999998899999999999
Q ss_pred HHH-hcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhccc
Q psy299 123 FTK-KKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRT 201 (240)
Q Consensus 123 ~~~-~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~ 201 (240)
|++ +++++||++.++|.+|...+++|++++...... . ++.+.-. + ..+...-.+-+..
T Consensus 82 f~~~~~g~~Fpv~~k~dvnG~~~~pl~~~Lk~~~~~~---------~----~~~~~~~--~------~~~~~~~~~p~~~ 140 (183)
T PRK10606 82 YCRTTWGVTFPMFSKIEVNGEGRHPLYQKLIAAAPTA---------V----APEESGF--Y------ARMVSKGRAPLYP 140 (183)
T ss_pred HHHHccCCCceeEEEEccCCCCCCHHHHHHHHhCCCC---------c----Cccccch--h------hhhhccccccccC
Confidence 997 799999999999999999999999987643310 0 0000000 0 0011111122345
Q ss_pred CCCCcceeEEEEcCCCCeeeeccCCCCccc--hhhhhhhcC
Q psy299 202 SAIKWNFTKFIVDKNGAPVERHAANASPAS--LIPNIEKYL 240 (240)
Q Consensus 202 ~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 240 (240)
++|+|||+|||||++|.||.||.+.+.|.+ +.++|++.|
T Consensus 141 ~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~~l 181 (183)
T PRK10606 141 DDILWNFEKFLVGRDGQVIQRFSPDMTPEDPIVMESIKLAL 181 (183)
T ss_pred CcccccCEEEEECCCCcEEEEECCCCCCCHHHHHHHHHHHh
Confidence 689999999999999999999999999987 999998764
No 2
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-32 Score=211.12 Aligned_cols=157 Identities=51% Similarity=0.950 Sum_probs=145.8
Q ss_pred cccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHH
Q psy299 43 ETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICE 122 (240)
Q Consensus 43 ~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~ 122 (240)
..+.+|++++++|++++|++++||++||.-.||.|+... +...|+.|+++|+++|+.|+++.++.|.++++++.+++++
T Consensus 3 ~~~yd~~~~~~~G~~~~l~~~~GkVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI~~ 81 (162)
T COG0386 3 MSIYDFSVKDIDGEPVSLSDYKGKVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEIAK 81 (162)
T ss_pred cccccceeeccCCCCccHHHhCCcEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHHHH
Confidence 357899999999999999999999999999999999988 8899999999999999999999999999999999999999
Q ss_pred HHHh-cCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhccc
Q psy299 123 FTKK-KNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRT 201 (240)
Q Consensus 123 ~~~~-~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~ 201 (240)
|++. ||++||++..++.+|..+++||+++.....+ . +.+
T Consensus 82 fC~~~YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g-------------------~---------------------~~~ 121 (162)
T COG0386 82 FCQLNYGVTFPMFSKIDVNGKNAHPLYKYLKEQKPG-------------------K---------------------LGG 121 (162)
T ss_pred HHHhccCceeeeeeEEeecCCCCCcHHHHHHhcCCC-------------------C---------------------ccC
Confidence 9985 9999999999999999999999998654432 1 667
Q ss_pred CCCCcceeEEEEcCCCCeeeeccCCCCccchhhhhhhcC
Q psy299 202 SAIKWNFTKFIVDKNGAPVERHAANASPASLIPNIEKYL 240 (240)
Q Consensus 202 ~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (240)
.+|+|||+|||||++|.||+||.|.+.|+++..+|++.|
T Consensus 122 ~~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL 160 (162)
T COG0386 122 KDIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLL 160 (162)
T ss_pred CccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHh
Confidence 899999999999999999999999999999999999854
No 3
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.97 E-value=1.8e-31 Score=220.49 Aligned_cols=177 Identities=37% Similarity=0.620 Sum_probs=151.7
Q ss_pred cccccccCCcccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCC
Q psy299 34 MADDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQE 113 (240)
Q Consensus 34 ~~~~~~~~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~ 113 (240)
........+..+|+|+++|.+|+.++|++++||++||+||++|||+|..++|.|++++++|+++|+.||+|++|.+..++
T Consensus 8 ~~~~~~~~~~~~pdf~l~d~~G~~vsL~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e 87 (199)
T PTZ00056 8 ITVSKDELRKSIYDYTVKTLEGTTVPMSSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQE 87 (199)
T ss_pred ccccchhcCCCCCceEEECCCCCEEeHHHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCC
Confidence 33445568889999999999999999999999999999999999999999999999999999999999999998776677
Q ss_pred CCCHHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCc-----ccccccccceEEEEcCCCCeEEeccCCCCc
Q psy299 114 PGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGT-----LVDAIKWNFTKFIVDKNGVPVERHAANASP 188 (240)
Q Consensus 114 ~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~-----~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~ 188 (240)
.++.+.+++|+++++++||++.+.+.++.....++.++....... ....+++.|++||||++|+|+.++.+..++
T Consensus 88 ~d~~e~~~~f~~~~~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~g~~~~ 167 (199)
T PTZ00056 88 FPNTKDIRKFNDKNKIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFSPRTEP 167 (199)
T ss_pred CCCHHHHHHHHHHcCCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeCCCCCH
Confidence 788999999999999999999777778888888888776432211 112456777899999999999999988888
Q ss_pred cchHHHHHHhcccCCCCcceeE
Q psy299 189 ASLIPHIEILGRTSAIKWNFTK 210 (240)
Q Consensus 189 ~~l~~~L~~ll~~~~i~~~~~~ 210 (240)
+.|.+.|+++|++++-...|..
T Consensus 168 ~~l~~~I~~ll~~~~~~~~~~~ 189 (199)
T PTZ00056 168 LELEKKIAELLGVKDYQELFKN 189 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999999876665544
No 4
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.97 E-value=4.2e-31 Score=222.33 Aligned_cols=163 Identities=50% Similarity=0.876 Sum_probs=143.0
Q ss_pred cccCCcccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCH
Q psy299 38 SWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDA 117 (240)
Q Consensus 38 ~~~~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~ 117 (240)
....|+.+|+|+++|.+|+.+++++++||++||+||++||++|..++|.|++++++|+++|+.||+|++|.+..++.++.
T Consensus 72 ~~~~g~~aPdF~l~d~~G~~vsLsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~ 151 (236)
T PLN02399 72 RAATEKSVHDFTVKDIDGKDVALSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSN 151 (236)
T ss_pred chhcCCCCCceEEECCCCCEEeHHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCH
Confidence 44689999999999999999999999999999999999999999999999999999999999999999987766677788
Q ss_pred HHHHHHH-HhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHH
Q psy299 118 DQICEFT-KKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIE 196 (240)
Q Consensus 118 e~~~~~~-~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~ 196 (240)
+++++|+ ++++++||++.+.|.++......|++++...++..++.+++.|++||||++|+|+.++.+..++++|+..|+
T Consensus 152 ~ei~~f~~~~~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~ 231 (236)
T PLN02399 152 PEIKQFACTRFKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQ 231 (236)
T ss_pred HHHHHHHHHhcCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCCCHHHHHHHHH
Confidence 9999998 689999999866666676667778776554444334457888999999999999999999888889999999
Q ss_pred Hhcc
Q psy299 197 ILGR 200 (240)
Q Consensus 197 ~ll~ 200 (240)
++|+
T Consensus 232 ~lL~ 235 (236)
T PLN02399 232 KLLA 235 (236)
T ss_pred HHhc
Confidence 9986
No 5
>PLN02412 probable glutathione peroxidase
Probab=99.97 E-value=2.8e-30 Score=207.90 Aligned_cols=161 Identities=51% Similarity=0.895 Sum_probs=140.6
Q ss_pred CCcccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHH
Q psy299 41 NAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQI 120 (240)
Q Consensus 41 ~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~ 120 (240)
..+.+|+|+++|.+|+.++|++++||++||+||++|||+|..++|.|++++++|+++|+.|++|++|.+.+++.++.+++
T Consensus 5 ~~~~~pdf~l~d~~G~~v~l~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~ 84 (167)
T PLN02412 5 SPKSIYDFTVKDIGGNDVSLNQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEI 84 (167)
T ss_pred cCCCCCceEEECCCCCEEeHHHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999997766666677776
Q ss_pred HHH-HHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhc
Q psy299 121 CEF-TKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILG 199 (240)
Q Consensus 121 ~~~-~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll 199 (240)
.++ +++++++||++.+.|..+......|+++....++..+..+++.|++||||++|+|+.++.+..+.++|...|+++|
T Consensus 85 ~~~~~~~~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 85 QQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred HHHHHHccCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 665 5889999999966677776677788877765554444467888999999999999999999999989999999998
Q ss_pred cc
Q psy299 200 RT 201 (240)
Q Consensus 200 ~~ 201 (240)
++
T Consensus 165 ~~ 166 (167)
T PLN02412 165 GQ 166 (167)
T ss_pred hh
Confidence 75
No 6
>KOG1651|consensus
Probab=99.96 E-value=1.8e-29 Score=196.64 Aligned_cols=160 Identities=54% Similarity=0.959 Sum_probs=147.0
Q ss_pred cCCcccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHH
Q psy299 40 KNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQ 119 (240)
Q Consensus 40 ~~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~ 119 (240)
....++.+|+.+|++|+.++|+.++||++||.-.||.|+.....-..|+.++++|+++|++|++..++.|+.+++.+.++
T Consensus 9 ~~~~siydf~~~d~~G~~v~l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 9 DEKGSIYDFSAKDLDGEYVSLSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred hhhcceeeeEEecCCCCCccHHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 45568999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred HHHHHH-hcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHh
Q psy299 120 ICEFTK-KKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198 (240)
Q Consensus 120 ~~~~~~-~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~l 198 (240)
+..++. +++..||++..+|.+|+.++++|++++...++ .
T Consensus 89 i~~f~~~r~~~~f~if~KidVNG~~~~PlykfLK~~~~~----------------------------------------~ 128 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFPIFQKIDVNGDNADPLYKFLKKVKGG----------------------------------------P 128 (171)
T ss_pred HHHHHHhccCCCCccEeEEecCCCCCchHHHHHhhcCCC----------------------------------------c
Confidence 999995 79999999999999999999999998653331 2
Q ss_pred cccCCCCcceeEEEEcCCCCeeeeccCCCCccchhhhhhhcC
Q psy299 199 GRTSAIKWNFTKFIVDKNGAPVERHAANASPASLIPNIEKYL 240 (240)
Q Consensus 199 l~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (240)
| +.+|+|||+|||||++|.||.||.|.+.|..+-+.|+++|
T Consensus 129 l-g~~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL 169 (171)
T KOG1651|consen 129 L-GDDIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLL 169 (171)
T ss_pred c-cccceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHh
Confidence 2 3389999999999999999999999999999999999875
No 7
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.96 E-value=1.5e-28 Score=194.79 Aligned_cols=150 Identities=55% Similarity=0.987 Sum_probs=119.7
Q ss_pred ccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHH
Q psy299 44 TVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEF 123 (240)
Q Consensus 44 ~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~ 123 (240)
.+|+|+++|.+|+.++|++++||++||+||++||| |..++|.|++++++|+++|+.|++|++|.+..++.++.+.+++|
T Consensus 1 ~~~~f~l~d~~G~~v~l~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~~~f 79 (152)
T cd00340 1 SIYDFSVKDIDGEPVSLSKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEIKEF 79 (152)
T ss_pred CcceeEEECCCCCEEeHHHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHHHHH
Confidence 37999999999999999999999999999999999 99999999999999998899999999886545555778999999
Q ss_pred HHh-cCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHH
Q psy299 124 TKK-KNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPH 194 (240)
Q Consensus 124 ~~~-~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~ 194 (240)
+++ ++++||++.+.|..+......++.+.....+..+..+++.|++||||++|+|++++.|..+.++|++.
T Consensus 80 ~~~~~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 80 CETNYGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred HHHhcCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 997 89999999655555654445555432211111112344456899999999999999998877666543
No 8
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.96 E-value=6.2e-28 Score=196.96 Aligned_cols=160 Identities=39% Similarity=0.701 Sum_probs=133.4
Q ss_pred CCcccCCeEeecCCCCcccCCCCCCcEE-EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHH
Q psy299 41 NAETVYDFTVKNIKGEDVPLSTYKGHVL-VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQ 119 (240)
Q Consensus 41 ~g~~~p~f~l~d~~G~~v~ls~~~gk~v-lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~ 119 (240)
.+..+|+|+++|.+|+.++|++++||++ |+.+||+|||+|+.++|.|++++++|+++|+.|++|++|.+..+++++.+.
T Consensus 16 ~~~~~p~f~l~d~~G~~vsLs~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~~~ 95 (183)
T PTZ00256 16 PTKSFFEFEAIDIDGQLVQLSKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDEPE 95 (183)
T ss_pred CCCcccceEeEcCCCCEEeHHHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCHHH
Confidence 4678999999999999999999999964 566799999999999999999999999999999999988655555567788
Q ss_pred HHHHHH-hcCcceeeeEeeecCCCCCchHHHHHhhhcCCcc--cccccccc---eEEEEcCCCCeEEeccCCCCccchHH
Q psy299 120 ICEFTK-KKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTL--VDAIKWNF---TKFIVDKNGVPVERHAANASPASLIP 193 (240)
Q Consensus 120 ~~~~~~-~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~--~~~v~~~P---~~~lID~~G~Iv~~~~~~~~~~~l~~ 193 (240)
+++|.. +++++||++.+.|.++.....+++++........ ...+..+| ++||||++|+|+.++.+..+.+.+.+
T Consensus 96 ~~~f~~~~~~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~ 175 (183)
T PTZ00256 96 IKEYVQKKFNVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQ 175 (183)
T ss_pred HHHHHHHhcCCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCCCHHHHHH
Confidence 999975 7899999997777777777788888777554211 11344445 57999999999999998888888999
Q ss_pred HHHHhcc
Q psy299 194 HIEILGR 200 (240)
Q Consensus 194 ~L~~ll~ 200 (240)
.|+++|+
T Consensus 176 ~I~~ll~ 182 (183)
T PTZ00256 176 DIEKLLN 182 (183)
T ss_pred HHHHHhc
Confidence 9999885
No 9
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.95 E-value=9.8e-28 Score=190.23 Aligned_cols=151 Identities=36% Similarity=0.725 Sum_probs=125.2
Q ss_pred cCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHH
Q psy299 45 VYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFT 124 (240)
Q Consensus 45 ~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~ 124 (240)
+.+|++.|.+|+.+++++++||++||+||++|||+|..++|.|++++++|+++|+.|++|+++.++.++.++.+.+++|+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~~~f~ 81 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEIESFA 81 (153)
T ss_pred cccceeECCCCCEecHHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999998766666667899999999
Q ss_pred Hh-cCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhc
Q psy299 125 KK-KNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILG 199 (240)
Q Consensus 125 ~~-~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll 199 (240)
++ ++++||++.+.+..+......+++.....++ ...|..++||||++|+|+.++.+..++++|...|+++|
T Consensus 82 ~~~~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~----~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 82 RRNYGVTFPMFSKIKILGSEAEPAFRFLVDSSKK----EPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred HHhcCCCCCccceEecCCCCCCcHHHHHHhcCCC----CCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 86 8999999965555555555566654332110 11112238999999999999999999988999998875
No 10
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.92 E-value=1.8e-24 Score=169.66 Aligned_cols=133 Identities=29% Similarity=0.416 Sum_probs=105.5
Q ss_pred cCCcccCCeEeec--CCCCcccCCCCCCcEEEEEEecC-CCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCC
Q psy299 40 KNAETVYDFTVKN--IKGEDVPLSTYKGHVLVIVNVAS-RCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGD 116 (240)
Q Consensus 40 ~~g~~~p~f~l~d--~~G~~v~ls~~~gk~vlv~F~at-wCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~ 116 (240)
++|+++|+|++++ .+|+.+++++++||++||+||++ |||+|+.++|.|++++++|+++++.+++|+.+ .+
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~-------~~ 73 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSD-------DD 73 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEES-------SS
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEeccc-------CC
Confidence 4799999999965 99999999999999999999999 99999999999999999999999999999987 24
Q ss_pred HHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCC
Q psy299 117 ADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANAS 187 (240)
Q Consensus 117 ~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~ 187 (240)
.. +.+++++++++||++ .|.. ..+.+.++..-......+ ..+|+++|||++|+|++++.+..+
T Consensus 74 ~~-~~~~~~~~~~~~~~~--~D~~----~~~~~~~~~~~~~~~~~~-~~~P~~~lId~~G~V~~~~~g~~~ 136 (146)
T PF08534_consen 74 PP-VREFLKKYGINFPVL--SDPD----GALAKALGVTIMEDPGNG-FGIPTTFLIDKDGKVVYRHVGPDP 136 (146)
T ss_dssp HH-HHHHHHHTTTTSEEE--EETT----SHHHHHTTCEEECCTTTT-SSSSEEEEEETTSBEEEEEESSBT
T ss_pred HH-HHHHHHhhCCCceEE--echH----HHHHHHhCCccccccccC-CeecEEEEEECCCEEEEEEeCCCC
Confidence 44 999999999999998 4422 234454432100000000 167999999999999999987766
No 11
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.91 E-value=1.9e-23 Score=168.43 Aligned_cols=146 Identities=16% Similarity=0.300 Sum_probs=121.4
Q ss_pred CcccCCeEeecCCCCcccCCCC-CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHH
Q psy299 42 AETVYDFTVKNIKGEDVPLSTY-KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQI 120 (240)
Q Consensus 42 g~~~p~f~l~d~~G~~v~ls~~-~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~ 120 (240)
|..+|+|++.+.+|+.++++++ +||++||+||++|||.|..+++.|++++++|+++++.+|+|++|....++.++++.+
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~ 80 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENM 80 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHH
Confidence 6789999999999999999998 999999999999999999999999999999998899999999985444444689999
Q ss_pred HHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEecc---------CCCCccch
Q psy299 121 CEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHA---------ANASPASL 191 (240)
Q Consensus 121 ~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~---------~~~~~~~l 191 (240)
++++++++++||++ .|..+ .+.+.+ ++...|++||||++|+|+++.. .....+++
T Consensus 81 ~~~~~~~~~~~~~l--~D~~~----~~~~~~----------~v~~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~ 144 (171)
T cd02969 81 KAKAKEHGYPFPYL--LDETQ----EVAKAY----------GAACTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDL 144 (171)
T ss_pred HHHHHHCCCCceEE--ECCch----HHHHHc----------CCCcCCcEEEECCCCeEEEeecccCCcccccccccHHHH
Confidence 99999999999998 34332 233333 4556789999999999998752 11234569
Q ss_pred HHHHHHhcccCC
Q psy299 192 IPHIEILGRTSA 203 (240)
Q Consensus 192 ~~~L~~ll~~~~ 203 (240)
.++|+.+|++..
T Consensus 145 ~~~i~~~l~~~~ 156 (171)
T cd02969 145 RAALDALLAGKP 156 (171)
T ss_pred HHHHHHHHcCCC
Confidence 999999998874
No 12
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.91 E-value=9.1e-24 Score=167.37 Aligned_cols=143 Identities=13% Similarity=0.222 Sum_probs=112.3
Q ss_pred cccCCcccCCeEeecCCCCcccCCCCCCcEEEEEEecC-CCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCC
Q psy299 38 SWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVAS-RCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGD 116 (240)
Q Consensus 38 ~~~~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~at-wCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~ 116 (240)
.+..|+.+|+|+++|.+|+.+++++++||++||+||++ |||.|+.+++.|++++++++++|+.+|+||.| +
T Consensus 3 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d--------~ 74 (154)
T PRK09437 3 PLKAGDIAPKFSLPDQDGEQVSLTDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTD--------K 74 (154)
T ss_pred cCCCCCcCCCcEeeCCCCCEEeHHHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------C
Confidence 45789999999999999999999999999999999986 68899999999999999999999999999976 7
Q ss_pred HHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCC----cccccccccceEEEEcCCCCeEEeccCCCCccchH
Q psy299 117 ADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGG----TLVDAIKWNFTKFIVDKNGVPVERHAANASPASLI 192 (240)
Q Consensus 117 ~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~----~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~ 192 (240)
.+.+++|+++++++||++ .|..+ .+.+.++..... .....+ .|++||||++|+|+..+.+....+.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~l--~D~~~----~~~~~~gv~~~~~~~~~~~~~~--~~~~~lid~~G~i~~~~~g~~~~~~~~ 146 (154)
T PRK09437 75 PEKLSRFAEKELLNFTLL--SDEDH----QVAEQFGVWGEKKFMGKTYDGI--HRISFLIDADGKIEHVFDKFKTSNHHD 146 (154)
T ss_pred HHHHHHHHHHhCCCCeEE--ECCCc----hHHHHhCCCcccccccccccCc--ceEEEEECCCCEEEEEEcCCCcchhHH
Confidence 899999999999999998 34332 233333321110 000011 267899999999999998766665544
Q ss_pred HHHH
Q psy299 193 PHIE 196 (240)
Q Consensus 193 ~~L~ 196 (240)
+.|+
T Consensus 147 ~~~~ 150 (154)
T PRK09437 147 VVLD 150 (154)
T ss_pred HHHH
Confidence 4333
No 13
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.91 E-value=7.5e-24 Score=173.17 Aligned_cols=139 Identities=18% Similarity=0.221 Sum_probs=113.1
Q ss_pred cccCCcccCCeEeecCCC--CcccCCCC-CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCC
Q psy299 38 SWKNAETVYDFTVKNIKG--EDVPLSTY-KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEP 114 (240)
Q Consensus 38 ~~~~g~~~p~f~l~d~~G--~~v~ls~~-~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~ 114 (240)
....|.++|+|++.|.+| +.++++++ +||++||+||++|||+|+.++|.|+++++ +++.||+|+.|
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~gk~vvv~FwatwC~~C~~e~p~l~~l~~----~~~~vi~v~~~------- 106 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLTQGKPVLLNVWATWCPTCRAEHQYLNQLSA----QGIRVVGMNYK------- 106 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHH----cCCEEEEEECC-------
Confidence 346799999999999984 67777665 79999999999999999999999988754 47999999976
Q ss_pred CCHHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHH
Q psy299 115 GDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPH 194 (240)
Q Consensus 115 ~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~ 194 (240)
++++.+++|+++++++||++. .|..+.. ...+ ++..+|++|+||++|+|++++.+..+.+.+++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~-~D~~~~~----~~~~----------gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~ 171 (185)
T PRK15412 107 DDRQKAISWLKELGNPYALSL-FDGDGML----GLDL----------GVYGAPETFLIDGNGIIRYRHAGDLNPRVWESE 171 (185)
T ss_pred CCHHHHHHHHHHcCCCCceEE-EcCCccH----HHhc----------CCCcCCeEEEECCCceEEEEEecCCCHHHHHHH
Confidence 478889999999999998531 3333321 1111 566779999999999999999998888889999
Q ss_pred HHHhcccC
Q psy299 195 IEILGRTS 202 (240)
Q Consensus 195 L~~ll~~~ 202 (240)
|+.++++.
T Consensus 172 i~~~~~~~ 179 (185)
T PRK15412 172 IKPLWEKY 179 (185)
T ss_pred HHHHHHHH
Confidence 99888653
No 14
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.91 E-value=1.3e-23 Score=159.79 Aligned_cols=123 Identities=22% Similarity=0.379 Sum_probs=104.2
Q ss_pred CCcccCCeEeecCCCCcccCCCCCCcEEEEEEecC-CCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHH
Q psy299 41 NAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVAS-RCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQ 119 (240)
Q Consensus 41 ~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~at-wCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~ 119 (240)
+|+++|+|++++.+|+.++|++++||++||.||++ |||.|..+++.|++++++++++|+.+++|+.| +.+.
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d--------~~~~ 72 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTD--------DPEE 72 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESS--------SHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccc--------cccc
Confidence 59999999999999999999999999999999999 99999999999999999999999999999987 7889
Q ss_pred HHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEe
Q psy299 120 ICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVER 181 (240)
Q Consensus 120 ~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~ 181 (240)
++++.+.++++||++. |.. ..+...++..... .....|++||||++|+|+++
T Consensus 73 ~~~~~~~~~~~~~~~~--D~~----~~~~~~~~~~~~~----~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 73 IKQFLEEYGLPFPVLS--DPD----GELAKAFGIEDEK----DTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp HHHHHHHHTCSSEEEE--ETT----SHHHHHTTCEETT----TSEESEEEEEEETTSBEEEE
T ss_pred hhhhhhhhcccccccc--Ccc----hHHHHHcCCcccc----CCceEeEEEEECCCCEEEeC
Confidence 9999999999999994 322 2334443222110 12266999999999999974
No 15
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.90 E-value=5.9e-23 Score=165.25 Aligned_cols=140 Identities=17% Similarity=0.298 Sum_probs=121.6
Q ss_pred cccccCCcccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCC
Q psy299 36 DDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPG 115 (240)
Q Consensus 36 ~~~~~~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~ 115 (240)
......|..+|+|++.+.+|+.+++++++||+++|+||++||++|+.+++.|++++++++++++.+++|++| +
T Consensus 32 ~~~~~~g~~~p~~~~~~~~g~~~~l~~~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d-------~ 104 (173)
T PRK03147 32 KEKVQVGKEAPNFVLTDLEGKKIELKDLKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVD-------E 104 (173)
T ss_pred ccccCCCCCCCCcEeecCCCCEEeHHHcCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcC-------C
Confidence 456789999999999999999999999999999999999999999999999999999999888999999988 5
Q ss_pred CHHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHH
Q psy299 116 DADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHI 195 (240)
Q Consensus 116 ~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L 195 (240)
+.+.++++.++++++||++ .|..+ .+.+.+ ++...|++|+||++|+|+..+.|..+.+++.+.|
T Consensus 105 ~~~~~~~~~~~~~~~~~~~--~d~~~----~~~~~~----------~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l 168 (173)
T PRK03147 105 TELAVKNFVNRYGLTFPVA--IDKGR----QVIDAY----------GVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYL 168 (173)
T ss_pred CHHHHHHHHHHhCCCceEE--ECCcc----hHHHHc----------CCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHH
Confidence 7899999999999999988 33332 233332 4666799999999999999988888888888877
Q ss_pred HHh
Q psy299 196 EIL 198 (240)
Q Consensus 196 ~~l 198 (240)
+++
T Consensus 169 ~~~ 171 (173)
T PRK03147 169 EKI 171 (173)
T ss_pred HHh
Confidence 754
No 16
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.90 E-value=5.7e-23 Score=159.71 Aligned_cols=138 Identities=19% Similarity=0.251 Sum_probs=110.8
Q ss_pred cccCCeEeecCCCCcccCCCCCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHH
Q psy299 43 ETVYDFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQIC 121 (240)
Q Consensus 43 ~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~-atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~ 121 (240)
.++|+|+++|.+|+.+++++++||++||+|| ++|||.|..+++.|+++++++.+.++.+|+|+.| +.+.++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d--------~~~~~~ 72 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPD--------SVESHA 72 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCC--------CHHHHH
Confidence 3689999999999999999999999999999 5899999999999999999999989999999976 689999
Q ss_pred HHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHH
Q psy299 122 EFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHI 195 (240)
Q Consensus 122 ~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L 195 (240)
+|+++++++||++ .|..+ .+...++...... .......|++||||++|+|++.+.+....+.+.+.|
T Consensus 73 ~~~~~~~~~~~~l--~D~~~----~~~~~~gv~~~~~-~~~~~~~p~~~lid~~G~v~~~~~g~~~~~~~~~~~ 139 (140)
T cd03017 73 KFAEKYGLPFPLL--SDPDG----KLAKAYGVWGEKK-KKYMGIERSTFLIDPDGKIVKVWRKVKPKGHAEEVL 139 (140)
T ss_pred HHHHHhCCCceEE--ECCcc----HHHHHhCCccccc-cccCCcceeEEEECCCCEEEEEEecCCccchHHHHh
Confidence 9999999999998 34332 2333343222110 011222389999999999999998877766666654
No 17
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.90 E-value=1.4e-22 Score=162.99 Aligned_cols=145 Identities=12% Similarity=0.117 Sum_probs=107.6
Q ss_pred ccccCCcccCCeEeecCCCCcccCCCCCCcEEEEEEecCC-CCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCC
Q psy299 37 DSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASR-CGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPG 115 (240)
Q Consensus 37 ~~~~~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atw-Cp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~ 115 (240)
.....|+.+|+|++.|.+|+.+++++++||++||+||++| ||+|..++|.|+++++++. ++.|++||.|
T Consensus 16 ~~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D-------- 85 (167)
T PRK00522 16 SLPQVGDKAPDFTLVANDLSDVSLADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISAD-------- 85 (167)
T ss_pred CCCCCCCCCCCeEEEcCCCcEEehHHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCC--------
Confidence 3456899999999999999999999999999999999999 9999999999999999983 7999999987
Q ss_pred CHHHHHHHHHhcCcc-eeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCC--CCccchH
Q psy299 116 DADQICEFTKKKNVQ-FDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAAN--ASPASLI 192 (240)
Q Consensus 116 ~~e~~~~~~~~~~~~-fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~--~~~~~l~ 192 (240)
+++..++|++++++. ++++ .|..+ ..+...++.........++ ..|++||||++|+|++.+.+. ....++.
T Consensus 86 ~~~~~~~f~~~~~~~~~~~l--sD~~~---~~~~~~~gv~~~~~~~~g~-~~r~tfvId~~G~I~~~~~~~~~~~~~~~~ 159 (167)
T PRK00522 86 LPFAQKRFCGAEGLENVITL--SDFRD---HSFGKAYGVAIAEGPLKGL-LARAVFVLDENNKVVYSELVPEITNEPDYD 159 (167)
T ss_pred CHHHHHHHHHhCCCCCceEe--ecCCc---cHHHHHhCCeecccccCCc-eeeEEEEECCCCeEEEEEECCCcCCCCCHH
Confidence 678889999999997 6887 33222 1233333322111000111 235899999999999988432 2333355
Q ss_pred HHHHH
Q psy299 193 PHIEI 197 (240)
Q Consensus 193 ~~L~~ 197 (240)
+.|+.
T Consensus 160 ~~l~~ 164 (167)
T PRK00522 160 AALAA 164 (167)
T ss_pred HHHHH
Confidence 54443
No 18
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-22 Score=160.07 Aligned_cols=132 Identities=17% Similarity=0.227 Sum_probs=107.5
Q ss_pred cccCCcccCCeEeecCCCCcccCCCCCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCC
Q psy299 38 SWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGD 116 (240)
Q Consensus 38 ~~~~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~-atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~ 116 (240)
.+.+|+++|+|+|.+.+|+.++|++++||++||+|+ ..++|.|..|...+++.+.++++.|++|++||.| +
T Consensus 3 ~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~D--------s 74 (157)
T COG1225 3 MLKVGDKAPDFELPDQDGETVSLSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPD--------S 74 (157)
T ss_pred cCCCCCcCCCeEeecCCCCEEehHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCC--------C
Confidence 467999999999999999999999999999999998 7799999999999999999999999999999987 8
Q ss_pred HHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcc-cc-cccccceEEEEcCCCCeEEecc
Q psy299 117 ADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTL-VD-AIKWNFTKFIVDKNGVPVERHA 183 (240)
Q Consensus 117 ~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~-~~-~v~~~P~~~lID~~G~Iv~~~~ 183 (240)
++..++|+++++++||+++| ..+. +.+.++....... +. -....+++||||++|+|++.+.
T Consensus 75 ~~~~~~F~~k~~L~f~LLSD--~~~~----v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~~ 137 (157)
T COG1225 75 PKSHKKFAEKHGLTFPLLSD--EDGE----VAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWR 137 (157)
T ss_pred HHHHHHHHHHhCCCceeeEC--CcHH----HHHHhCcccccccCccccccccceEEEECCCCeEEEEec
Confidence 99999999999999999943 3332 3333333221000 00 0112368899999999999993
No 19
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.89 E-value=9e-23 Score=167.06 Aligned_cols=144 Identities=11% Similarity=0.100 Sum_probs=106.1
Q ss_pred cCCcccCCeEeec-CCCC--cccCCCCCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCC
Q psy299 40 KNAETVYDFTVKN-IKGE--DVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPG 115 (240)
Q Consensus 40 ~~g~~~p~f~l~d-~~G~--~v~ls~~~gk~vlv~F~-atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~ 115 (240)
.+|+++|+|++.+ .+|+ .+++++++||++||+|| ++|||+|..+++.|++++++++++|+.||+||.|
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D-------- 74 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD-------- 74 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC--------
Confidence 5799999999998 5776 68888999999999999 9999999999999999999999999999999987
Q ss_pred CHHHHHHHHHh----cCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccch
Q psy299 116 DADQICEFTKK----KNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASL 191 (240)
Q Consensus 116 ~~e~~~~~~~~----~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l 191 (240)
+.+..++|.+. .+++||++ .|..+ .+.+.++..... . ++ ..|++||||++|+|++.+........-
T Consensus 75 ~~~~~~~~~~~~~~~~~l~fpll--sD~~~----~~a~~~gv~~~~-~--g~-~~p~tfiID~~G~I~~~~~~~~~~~~~ 144 (187)
T TIGR03137 75 THFVHKAWHDTSEAIGKITYPML--GDPTG----VLTRNFGVLIEE-A--GL-ADRGTFVIDPEGVIQAVEITDNGIGRD 144 (187)
T ss_pred CHHHHHHHHhhhhhccCcceeEE--ECCcc----HHHHHhCCcccC-C--Cc-eeeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 56666666654 36889998 44322 233333321110 0 11 248899999999999988654443333
Q ss_pred HHHHHHhccc
Q psy299 192 IPHIEILGRT 201 (240)
Q Consensus 192 ~~~L~~ll~~ 201 (240)
.++|.+.|..
T Consensus 145 ~~~ll~~l~~ 154 (187)
T TIGR03137 145 ASELLRKIKA 154 (187)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 20
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.89 E-value=1.1e-22 Score=164.62 Aligned_cols=137 Identities=20% Similarity=0.191 Sum_probs=109.9
Q ss_pred cccCCcccCCeEeecCCCCc--ccCCCC-CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCC
Q psy299 38 SWKNAETVYDFTVKNIKGED--VPLSTY-KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEP 114 (240)
Q Consensus 38 ~~~~g~~~p~f~l~d~~G~~--v~ls~~-~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~ 114 (240)
...+|.++|+|+++|.+|+. ++++++ +||+++|+||++|||+|+.++|.++++++ +++.+|+|+.+
T Consensus 33 ~~~vG~~ap~f~l~~~~G~~~~~~~~~~~~gk~vll~F~a~wC~~C~~~~p~l~~l~~----~~~~vi~V~~~------- 101 (173)
T TIGR00385 33 SALIGKPVPAFPLAALREPLQAYTPEAFIQGKPVLLNVWASWCPPCRAEHPYLNELAK----DGLPIVGVDYK------- 101 (173)
T ss_pred chhcCCCCCCccccccCCCCcccCHHHhcCCCEEEEEEECCcCHHHHHHHHHHHHHHH----cCCEEEEEECC-------
Confidence 45689999999999999974 444565 79999999999999999999999988764 37999999876
Q ss_pred CCHHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHH
Q psy299 115 GDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPH 194 (240)
Q Consensus 115 ~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~ 194 (240)
++.+..++|+++++++||.+. .|..+.. ...+ ++..+|++|+||++|+|++++.|..+.+++.+.
T Consensus 102 ~~~~~~~~~~~~~~~~f~~v~-~D~~~~~----~~~~----------~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~ 166 (173)
T TIGR00385 102 DQSQNALKFLKELGNPYQAIL-IDPNGKL----GLDL----------GVYGAPETFLVDGNGVILYRHAGPLNNEVWTEG 166 (173)
T ss_pred CChHHHHHHHHHcCCCCceEE-ECCCCch----HHhc----------CCeeCCeEEEEcCCceEEEEEeccCCHHHHHHH
Confidence 456778899999999997431 3433332 2222 455579999999999999999988888889999
Q ss_pred HHHhcc
Q psy299 195 IEILGR 200 (240)
Q Consensus 195 L~~ll~ 200 (240)
|+++++
T Consensus 167 l~~~~~ 172 (173)
T TIGR00385 167 FLPAME 172 (173)
T ss_pred HHHHhh
Confidence 998874
No 21
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.89 E-value=3.7e-22 Score=156.85 Aligned_cols=132 Identities=16% Similarity=0.239 Sum_probs=106.1
Q ss_pred ccCCcccCCeEeecCCCCcccCCCCCC-cEEEEEEe-cCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCC
Q psy299 39 WKNAETVYDFTVKNIKGEDVPLSTYKG-HVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGD 116 (240)
Q Consensus 39 ~~~g~~~p~f~l~d~~G~~v~ls~~~g-k~vlv~F~-atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~ 116 (240)
+..|..+|+|.+++.+|+.+++++++| |+++|.|| ++||+.|..++|.|++++++++++|+.+|+||.| +
T Consensus 1 ~~~G~~~p~~~l~~~~g~~v~l~~~~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d--------~ 72 (149)
T cd03018 1 LEVGDKAPDFELPDQNGQEVRLSEFRGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVD--------S 72 (149)
T ss_pred CCCCCcCCCcEecCCCCCEEeHHHHcCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCC--------C
Confidence 357999999999999999999999999 99999888 9999999999999999999999889999999976 6
Q ss_pred HHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCC
Q psy299 117 ADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANA 186 (240)
Q Consensus 117 ~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~ 186 (240)
++.+++|+++++++||++. |... ...+...++...... + ...|++||||++|+|++.+.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~--D~~~--~~~~~~~~g~~~~~~---~-~~~~~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 73 PFSLRAWAEENGLTFPLLS--DFWP--HGEVAKAYGVFDEDL---G-VAERAVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred HHHHHHHHHhcCCCceEec--CCCc--hhHHHHHhCCccccC---C-CccceEEEECCCCEEEEEEecCC
Confidence 7889999999999999983 3220 122333333221100 1 12468899999999999887654
No 22
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.88 E-value=1.9e-22 Score=154.67 Aligned_cols=123 Identities=14% Similarity=0.233 Sum_probs=100.8
Q ss_pred cccCCeEeecCCC--CcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHH
Q psy299 43 ETVYDFTVKNIKG--EDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQI 120 (240)
Q Consensus 43 ~~~p~f~l~d~~G--~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~ 120 (240)
.++|+|+++|.+| +.+++++++||++||.||++|||+|+.++|.|+++.+++ ++.||+|+.+ ++.+.+
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~-------~~~~~~ 70 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLKGKPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYK-------DNPENA 70 (127)
T ss_pred CCCCCcccccccCCCccccHHHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECC-------CCHHHH
Confidence 3689999999999 889999999999999999999999999999999998775 4999999976 588999
Q ss_pred HHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccc
Q psy299 121 CEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPAS 190 (240)
Q Consensus 121 ~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~ 190 (240)
++++++++++|+.+. .|..+. +...+ ++..+|++|+||++|+|+.++.|..+.+.
T Consensus 71 ~~~~~~~~~~~~~~~-~D~~~~----~~~~~----------~v~~~P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 71 LAWLARHGNPYAAVG-FDPDGR----VGIDL----------GVYGVPETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred HHHHHhcCCCCceEE-ECCcch----HHHhc----------CCCCCCeEEEECCCceEEEEEeccCChHh
Confidence 999999999986431 333222 22222 56667999999999999999988766543
No 23
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.88 E-value=7.1e-22 Score=159.70 Aligned_cols=128 Identities=13% Similarity=0.148 Sum_probs=99.7
Q ss_pred CCcccCCeEeecCCC----CcccCCCCCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCC
Q psy299 41 NAETVYDFTVKNIKG----EDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPG 115 (240)
Q Consensus 41 ~g~~~p~f~l~d~~G----~~v~ls~~~gk~vlv~F~-atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~ 115 (240)
+|+++|+|++.+.+| +.++|++++||++||+|| ++|||+|..+++.|++++++|.++|+.+++||+|
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d-------- 72 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTD-------- 72 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecC--------
Confidence 589999999999988 789999999999999999 8999999999999999999999999999999987
Q ss_pred CHHHHHHHHHh-------cCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCC
Q psy299 116 DADQICEFTKK-------KNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANA 186 (240)
Q Consensus 116 ~~e~~~~~~~~-------~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~ 186 (240)
+.+..+++.+. .+++||++ .|..+. +.+.++..... .-...|++||||++|+|++++.+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~f~~l--~D~~~~----~~~~~gv~~~~----~~~~~p~~~lID~~G~I~~~~~~~~ 140 (173)
T cd03015 73 SHFSHLAWRNTPRKEGGLGKINFPLL--ADPKKK----ISRDYGVLDEE----EGVALRGTFIIDPEGIIRHITVNDL 140 (173)
T ss_pred CHHHHHHHHHhhhhhCCccCcceeEE--ECCchh----HHHHhCCcccc----CCceeeEEEEECCCCeEEEEEecCC
Confidence 44555556554 46889998 443332 33333321110 0013479999999999999985443
No 24
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.88 E-value=8.5e-22 Score=154.02 Aligned_cols=126 Identities=16% Similarity=0.162 Sum_probs=99.9
Q ss_pred CCcccCCeEeecCCCCcccCCCCCCcEEEEEEecCC-CCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHH
Q psy299 41 NAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASR-CGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQ 119 (240)
Q Consensus 41 ~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atw-Cp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~ 119 (240)
.|.++|+|++++.+|+.++|++++||++||+||++| ||+|+.+++.|++++++++ |+.||+||.| +.+.
T Consensus 2 ~G~~aP~f~l~~~~g~~~~l~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d--------~~~~ 71 (143)
T cd03014 2 VGDKAPDFTLVTSDLSEVSLADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISAD--------LPFA 71 (143)
T ss_pred CCCCCCCcEEECCCCcEEeHHHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECC--------CHHH
Confidence 689999999999999999999999999999999998 6999999999999999984 7999999987 6788
Q ss_pred HHHHHHhcCc-ceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCC
Q psy299 120 ICEFTKKKNV-QFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAAN 185 (240)
Q Consensus 120 ~~~~~~~~~~-~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~ 185 (240)
.+++.+++++ +||++. |... ......++..... .++ ..|++||||++|+|++.+.+.
T Consensus 72 ~~~~~~~~~~~~~~~l~--D~~~---~~~~~~~gv~~~~---~~~-~~~~~~iid~~G~I~~~~~~~ 129 (143)
T cd03014 72 QKRWCGAEGVDNVTTLS--DFRD---HSFGKAYGVLIKD---LGL-LARAVFVIDENGKVIYVELVP 129 (143)
T ss_pred HHHHHHhcCCCCceEee--cCcc---cHHHHHhCCeecc---CCc-cceEEEEEcCCCeEEEEEECC
Confidence 8999999986 788883 3220 1222333221110 011 247999999999999988654
No 25
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.88 E-value=5.7e-22 Score=152.03 Aligned_cols=113 Identities=14% Similarity=0.272 Sum_probs=94.0
Q ss_pred CCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeee
Q psy299 55 GEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 55 G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~ 134 (240)
|+.+++++++||++||+||++|||+|..++|.|++++++++++++.+|+|+.+.+. .+++.+.+++++++++++||++
T Consensus 13 ~~~v~l~~~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~--~~~~~~~~~~~~~~~~~~~p~~ 90 (126)
T cd03012 13 DKPLSLAQLRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFA--FERDLANVKSAVLRYGITYPVA 90 (126)
T ss_pred CCccCHHHhCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccc--cccCHHHHHHHHHHcCCCCCEE
Confidence 57899999999999999999999999999999999999999989999999875321 2357899999999999999998
Q ss_pred EeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCC
Q psy299 135 EKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAAN 185 (240)
Q Consensus 135 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~ 185 (240)
.|..+ .+...+ ++..+|++||||++|+|++++.|.
T Consensus 91 --~D~~~----~~~~~~----------~v~~~P~~~vid~~G~v~~~~~G~ 125 (126)
T cd03012 91 --NDNDY----ATWRAY----------GNQYWPALYLIDPTGNVRHVHFGE 125 (126)
T ss_pred --ECCch----HHHHHh----------CCCcCCeEEEECCCCcEEEEEecC
Confidence 33322 233333 456679999999999999988653
No 26
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.87 E-value=1.4e-21 Score=160.29 Aligned_cols=132 Identities=11% Similarity=0.123 Sum_probs=101.6
Q ss_pred ccccCCcccCCeEeecCCCCcccCC--CCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCC
Q psy299 37 DSWKNAETVYDFTVKNIKGEDVPLS--TYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEP 114 (240)
Q Consensus 37 ~~~~~g~~~p~f~l~d~~G~~v~ls--~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~ 114 (240)
.....|+++|+|+++|.+|+.++++ +++||+++|+||++|||+|+.++|.++++++++ ++.+++|+.|
T Consensus 44 ~~~~vG~~aP~f~l~d~~G~~v~l~~~~~~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~---~~~vv~Is~~------- 113 (189)
T TIGR02661 44 HGPDVGDAAPIFNLPDFDGEPVRIGGSIAPGRPTLLMFTAPSCPVCDKLFPIIKSIARAE---ETDVVMISDG------- 113 (189)
T ss_pred cCCCCCCcCCCcEecCCCCCEEeccchhcCCCEEEEEEECCCChhHHHHHHHHHHHHHhc---CCcEEEEeCC-------
Confidence 3568999999999999999999995 579999999999999999999999999987653 5788889843
Q ss_pred CCHHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHH
Q psy299 115 GDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPH 194 (240)
Q Consensus 115 ~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~ 194 (240)
+++..++|+++++++++.+.. . ..+...+ ++..+|++|+||++|+|++... ....+.+++.
T Consensus 114 -~~~~~~~~~~~~~~~~~~~~~---~----~~i~~~y----------~v~~~P~~~lID~~G~I~~~g~-~~~~~~le~l 174 (189)
T TIGR02661 114 -TPAEHRRFLKDHELGGERYVV---S----AEIGMAF----------QVGKIPYGVLLDQDGKIRAKGL-TNTREHLESL 174 (189)
T ss_pred -CHHHHHHHHHhcCCCcceeec---h----hHHHHhc----------cCCccceEEEECCCCeEEEccC-CCCHHHHHHH
Confidence 788999999999999876521 1 1222222 4556799999999999998642 2223334444
Q ss_pred HHH
Q psy299 195 IEI 197 (240)
Q Consensus 195 L~~ 197 (240)
|+.
T Consensus 175 l~~ 177 (189)
T TIGR02661 175 LEA 177 (189)
T ss_pred HHH
Confidence 443
No 27
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.87 E-value=9.7e-22 Score=153.11 Aligned_cols=133 Identities=15% Similarity=0.178 Sum_probs=103.7
Q ss_pred ccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCC-cHHHHHHHHHHHHHHhhcC---cEEEEeecCCCCCCCCCCHHH
Q psy299 44 TVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGY-TGKHYKELVELDEKFRDRG---LRILAFPCNQFGGQEPGDADQ 119 (240)
Q Consensus 44 ~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~-C~~~~~~L~~l~~~~~~~~---v~vi~Vs~D~~~~~~~~~~e~ 119 (240)
.+|+|++.|.+|+.+++++++||++||+||++||+. |..+++.|+++++++++++ +.+++||.| +..++++.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d----~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD----PERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC----CCCCCHHH
Confidence 479999999999999999999999999999999996 9999999999999999864 999999988 33467899
Q ss_pred HHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcc----cccccccceEEEEcCCCCeEEecc
Q psy299 120 ICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTL----VDAIKWNFTKFIVDKNGVPVERHA 183 (240)
Q Consensus 120 ~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~----~~~v~~~P~~~lID~~G~Iv~~~~ 183 (240)
+++|+++++.+|+++.+ .. .....+...++....... ...+...|.+||||++|+|+..+.
T Consensus 77 ~~~~~~~~~~~~~~l~~--~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~ 141 (142)
T cd02968 77 LKAYAKAFGPGWIGLTG--TP-EEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG 141 (142)
T ss_pred HHHHHHHhCCCcEEEEC--CH-HHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence 99999999999998832 11 111233444433221110 112334578999999999998874
No 28
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.86 E-value=3.9e-21 Score=144.34 Aligned_cols=110 Identities=16% Similarity=0.228 Sum_probs=91.8
Q ss_pred CCeEeecCCCCcccCCCCC-CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHH
Q psy299 46 YDFTVKNIKGEDVPLSTYK-GHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFT 124 (240)
Q Consensus 46 p~f~l~d~~G~~v~ls~~~-gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~ 124 (240)
|+|.+++.+|+.+++++++ ||++||+||++||++|+.++|.++++++++++ ++.+++++ | ++.+..++++
T Consensus 1 p~f~l~~~~G~~~~l~~~~~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~-~~~vi~v~-~-------~~~~~~~~~~ 71 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISPGRPTLLFFLSPTCPVCKKLLPVIRSIARAEAD-WLDVVLAS-D-------GEKAEHQRFL 71 (114)
T ss_pred CCceeecCCCCEEEcccccCCCeEEEEEECCCCcchHhHhHHHHHHHHHhcC-CcEEEEEe-C-------CCHHHHHHHH
Confidence 7899999999999999997 99999999999999999999999999998865 58888886 3 4788999999
Q ss_pred HhcCcc-eeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEec
Q psy299 125 KKKNVQ-FDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERH 182 (240)
Q Consensus 125 ~~~~~~-fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~ 182 (240)
+++++. +|++. + ..+...+ ++..+|++|+||++|+|+++.
T Consensus 72 ~~~~~~~~p~~~--~------~~~~~~~----------~~~~~P~~~vid~~G~v~~~~ 112 (114)
T cd02967 72 KKHGLEAFPYVL--S------AELGMAY----------QVSKLPYAVLLDEAGVIAAKG 112 (114)
T ss_pred HHhCCCCCcEEe--c------HHHHhhc----------CCCCcCeEEEECCCCeEEecc
Confidence 999995 88872 1 1122222 456679999999999999764
No 29
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.86 E-value=1.2e-21 Score=153.63 Aligned_cols=107 Identities=12% Similarity=0.083 Sum_probs=85.1
Q ss_pred CcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc-------CcEEEEeecCCCCCCCCCCHHHHHHHHHhcC
Q psy299 56 EDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR-------GLRILAFPCNQFGGQEPGDADQICEFTKKKN 128 (240)
Q Consensus 56 ~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~-------~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~ 128 (240)
..+++++++||+++|+|||+|||+|+.++|.|.+++++++++ ++.||+||.| .+.+.+++|+++.+
T Consensus 16 ~~~~ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D-------~~~~~~~~f~~~~~ 88 (146)
T cd03008 16 EREIVARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD-------QSEQQQESFLKDMP 88 (146)
T ss_pred ccccHHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC-------CCHHHHHHHHHHCC
Confidence 457889999999999999999999999999999999988753 6999999987 46788999999999
Q ss_pred cceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEec
Q psy299 129 VQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERH 182 (240)
Q Consensus 129 ~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~ 182 (240)
+.|+.+...+ .....+...+ ++..+|++||||++|+|+.+.
T Consensus 89 ~~~~~~p~~~---~~~~~l~~~y----------~v~~iPt~vlId~~G~Vv~~~ 129 (146)
T cd03008 89 KKWLFLPFED---EFRRELEAQF----------SVEELPTVVVLKPDGDVLAAN 129 (146)
T ss_pred CCceeecccc---hHHHHHHHHc----------CCCCCCEEEEECCCCcEEeeC
Confidence 8875542111 1111233332 566779999999999999874
No 30
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.86 E-value=5.2e-21 Score=158.47 Aligned_cols=160 Identities=16% Similarity=0.180 Sum_probs=113.7
Q ss_pred ccCCcccCCeEeecCCCCcccCCCCCCcEEEE-EEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCH
Q psy299 39 WKNAETVYDFTVKNIKGEDVPLSTYKGHVLVI-VNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDA 117 (240)
Q Consensus 39 ~~~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv-~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~ 117 (240)
+..|+.+|+|++.+.+| .+++++++||+++| +||++|||+|..+++.|++++++++++|+.|++||+| +.
T Consensus 2 ~~vG~~aP~F~~~~~~g-~v~l~d~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D--------~~ 72 (202)
T PRK13190 2 VKLGQKAPDFTVNTTKG-PIDLSKYKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVD--------SI 72 (202)
T ss_pred CCCCCCCCCcEEecCCC-cEeHHHhCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CH
Confidence 46899999999999988 69999999997766 6899999999999999999999999999999999987 44
Q ss_pred HHH----HHHHHhcC--cceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEec----cCCCC
Q psy299 118 DQI----CEFTKKKN--VQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERH----AANAS 187 (240)
Q Consensus 118 e~~----~~~~~~~~--~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~----~~~~~ 187 (240)
+.. +++.++++ ++||++ .|..+ .+...++..... .+ ...|.+||||++|+|++.. ....+
T Consensus 73 ~~~~~w~~~~~~~~g~~~~fPll--~D~~~----~ia~~ygv~~~~-~g---~~~p~~fiId~~G~I~~~~~~~~~~gr~ 142 (202)
T PRK13190 73 YSHIAWLRDIEERFGIKIPFPVI--ADIDK----ELAREYNLIDEN-SG---ATVRGVFIIDPNQIVRWMIYYPAETGRN 142 (202)
T ss_pred HHHHHHHHhHHHhcCCCceEEEE--ECCCh----HHHHHcCCcccc-CC---cEEeEEEEECCCCEEEEEEEeCCCCCCC
Confidence 443 34444565 589999 44433 233444331110 01 1358999999999999866 22335
Q ss_pred ccchHHHHHHhcccC------CCCcceeEEEEcCCC
Q psy299 188 PASLIPHIEILGRTS------AIKWNFTKFIVDKNG 217 (240)
Q Consensus 188 ~~~l~~~L~~ll~~~------~i~~~~~~~~i~~~~ 217 (240)
.+++...|+.+.... +..|-=.+-++....
T Consensus 143 ~~ellr~l~~l~~~~~~~~~~p~~w~~g~~~~~~~~ 178 (202)
T PRK13190 143 IDEIIRITKALQVNWKRKVATPANWQPGQEGIVPAP 178 (202)
T ss_pred HHHHHHHHHHhhhHHhcCCCcCCCCCcCCceecCCC
Confidence 566777777766421 346655544444433
No 31
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.85 E-value=1.4e-20 Score=146.10 Aligned_cols=129 Identities=19% Similarity=0.217 Sum_probs=103.6
Q ss_pred ccCCeEeecCCCCcccCCCCCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHH
Q psy299 44 TVYDFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICE 122 (240)
Q Consensus 44 ~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~-atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~ 122 (240)
.+|+|+++|.+|+.+++++++||++||+|| ++||+.|..+++.|+++++++++.++.+|+|+.| +++.+++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d--------~~~~~~~ 72 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVD--------SPFSHKA 72 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHHHHHH
Confidence 479999999999999999999999999999 7899999999999999999998889999999976 6889999
Q ss_pred HHHhc-CcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCC
Q psy299 123 FTKKK-NVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANAS 187 (240)
Q Consensus 123 ~~~~~-~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~ 187 (240)
+++++ +.+|+++ .|..+ .+...++.......+ .....|++||||++|+|++++.+...
T Consensus 73 ~~~~~~~~~~~~l--~D~~~----~~~~~~g~~~~~~~~-~~~~~p~~~lid~~g~i~~~~~~~~~ 131 (140)
T cd02971 73 WAEKEGGLNFPLL--SDPDG----EFAKAYGVLIEKSAG-GGLAARATFIIDPDGKIRYVEVEPLP 131 (140)
T ss_pred HHhcccCCCceEE--ECCCh----HHHHHcCCccccccc-cCceeEEEEEECCCCcEEEEEecCCC
Confidence 99999 9999998 33333 233443322211000 11234789999999999999876554
No 32
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.85 E-value=1.9e-20 Score=173.05 Aligned_cols=138 Identities=14% Similarity=0.102 Sum_probs=112.9
Q ss_pred ccCCcccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHH
Q psy299 39 WKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDAD 118 (240)
Q Consensus 39 ~~~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e 118 (240)
...+..+|+|++.|.+|+.++++ +||++||+|||+||++|+.++|.|++++++++..++.||+|+++... ...+.+
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~--~e~~~~ 107 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFL--HEKKDG 107 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccc--ccccHH
Confidence 56778999999999999999987 89999999999999999999999999999998778999999875321 224567
Q ss_pred HHHHHHHhcCc-ceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHH
Q psy299 119 QICEFTKKKNV-QFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIE 196 (240)
Q Consensus 119 ~~~~~~~~~~~-~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~ 196 (240)
.++++++..+. .+|++ .|..+ .+.+.+ +++.+|+++|||++|+|+.+..|..+.++|.+.|+
T Consensus 108 ~~~~~~~~~~y~~~pV~--~D~~~----~lak~f----------gV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 108 DFQKWYAGLDYPKLPVL--TDNGG----TLAQSL----------NISVYPSWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred HHHHHHHhCCCccccee--ccccH----HHHHHc----------CCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 78888877665 46777 33322 333333 57778999999999999999999888888888777
No 33
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.84 E-value=2.9e-20 Score=155.22 Aligned_cols=142 Identities=14% Similarity=0.172 Sum_probs=104.4
Q ss_pred cCCcccCCeEeecCCCCcccCCCCCCcEE-EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHH
Q psy299 40 KNAETVYDFTVKNIKGEDVPLSTYKGHVL-VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDAD 118 (240)
Q Consensus 40 ~~g~~~p~f~l~d~~G~~v~ls~~~gk~v-lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e 118 (240)
..|+.+|+|++.+.+|+...+++++||++ |++||++|||+|..+++.|++++++|+++|+.||+||+| +.+
T Consensus 3 ~~Gd~aPdF~l~t~~G~~~~~~~~~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D--------~~~ 74 (215)
T PRK13599 3 LLGEKFPSMEVVTTQGVKRLPEDYAGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVD--------QVF 74 (215)
T ss_pred CCCCCCCCCEeECCCCcEecHHHHCCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCC--------CHH
Confidence 57999999999999999888889999975 679999999999999999999999999999999999988 444
Q ss_pred H---HHHHHHh---cCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccC-CC---Cc
Q psy299 119 Q---ICEFTKK---KNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAA-NA---SP 188 (240)
Q Consensus 119 ~---~~~~~~~---~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~-~~---~~ 188 (240)
. +.+++++ .+++||++ .|..+. +...++...... +....|++||||++|+|+..+.. .. +.
T Consensus 75 ~~~~w~~~i~~~~~~~i~fPil--~D~~~~----va~~yg~~~~~~---~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~ 145 (215)
T PRK13599 75 SHIKWVEWIKDNTNIAIPFPVI--ADDLGK----VSNQLGMIHPGK---GTNTVRAVFIVDDKGTIRLIMYYPQEVGRNV 145 (215)
T ss_pred HHHHHHHhHHHhcCCCCceeEE--ECCCch----HHHHcCCCccCC---CCceeeEEEEECCCCEEEEEEEcCCCCCCCH
Confidence 4 4444443 57899999 444333 333333321110 11234799999999999987632 22 23
Q ss_pred cchHHHHHHh
Q psy299 189 ASLIPHIEIL 198 (240)
Q Consensus 189 ~~l~~~L~~l 198 (240)
+++.+.|+.+
T Consensus 146 ~eilr~l~~l 155 (215)
T PRK13599 146 DEILRALKAL 155 (215)
T ss_pred HHHHHHHHHh
Confidence 4455566554
No 34
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.84 E-value=3.4e-20 Score=151.56 Aligned_cols=128 Identities=10% Similarity=0.141 Sum_probs=99.8
Q ss_pred ccCCcccCCeEeecC---CCCcccCCCCCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCC
Q psy299 39 WKNAETVYDFTVKNI---KGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEP 114 (240)
Q Consensus 39 ~~~g~~~p~f~l~d~---~G~~v~ls~~~gk~vlv~F~-atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~ 114 (240)
+.+|.++|+|+.... +...++|++++||++||+|| ++|||+|..+++.|++++++++++|+.|++||.|
T Consensus 2 ~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D------- 74 (187)
T PRK10382 2 SLINTKIKPFKNQAFKNGEFIEVTEKDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTD------- 74 (187)
T ss_pred CccCCcCCCcEEEEEeCCcceEEEHHHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCC-------
Confidence 468999999997653 34557778999999999999 9999999999999999999999999999999987
Q ss_pred CCHHHHHHHHHh----cCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccC
Q psy299 115 GDADQICEFTKK----KNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAA 184 (240)
Q Consensus 115 ~~~e~~~~~~~~----~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~ 184 (240)
+....++|.+. .+++||++. |..+ .+.+.++..... .++ ..|++||||++|+|++.+..
T Consensus 75 -~~~~~~a~~~~~~~~~~l~fplls--D~~~----~ia~~ygv~~~~---~g~-~~r~tfIID~~G~I~~~~~~ 137 (187)
T PRK10382 75 -THFTHKAWHSSSETIAKIKYAMIG--DPTG----ALTRNFDNMRED---EGL-ADRATFVVDPQGIIQAIEVT 137 (187)
T ss_pred -CHHHHHHHHHhhccccCCceeEEE--cCch----HHHHHcCCCccc---CCc-eeeEEEEECCCCEEEEEEEe
Confidence 78888888876 488999994 4322 233343321110 011 13789999999999998754
No 35
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.84 E-value=2.1e-20 Score=186.72 Aligned_cols=147 Identities=18% Similarity=0.232 Sum_probs=121.3
Q ss_pred cccccCCcccCCeEeec--CCCCcccC-CCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCC
Q psy299 36 DDSWKNAETVYDFTVKN--IKGEDVPL-STYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQ 112 (240)
Q Consensus 36 ~~~~~~g~~~p~f~l~d--~~G~~v~l-s~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~ 112 (240)
......|..+|+|...+ .+|+++++ ++++||++||+|||+||++|+.++|.|++++++|+++++.||+|+++.+ .
T Consensus 388 ~~~~~~g~~~p~f~~~~~~~~g~~~~l~~~lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~--D 465 (1057)
T PLN02919 388 LESKKTATKVPEFPPKLDWLNTAPLQFRRDLKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKF--D 465 (1057)
T ss_pred hhccccCCcCCCCcccccccCCccccchhhcCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccc--c
Confidence 34456899999999876 78999998 6899999999999999999999999999999999988999999986532 2
Q ss_pred CCCCHHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchH
Q psy299 113 EPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLI 192 (240)
Q Consensus 113 ~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~ 192 (240)
..++.+.+++++++++++||++. |..+ .+...+ ++..+|+++|||++|+|+.++.+....+.|.
T Consensus 466 ~~~~~~~~~~~~~~~~i~~pvv~--D~~~----~~~~~~----------~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~ 529 (1057)
T PLN02919 466 NEKDLEAIRNAVLRYNISHPVVN--DGDM----YLWREL----------GVSSWPTFAVVSPNGKLIAQLSGEGHRKDLD 529 (1057)
T ss_pred ccccHHHHHHHHHHhCCCccEEE--CCch----HHHHhc----------CCCccceEEEECCCCeEEEEEecccCHHHHH
Confidence 22467899999999999999983 3222 223222 5777899999999999999988877778888
Q ss_pred HHHHHhcc
Q psy299 193 PHIEILGR 200 (240)
Q Consensus 193 ~~L~~ll~ 200 (240)
+.|+.++.
T Consensus 530 ~~l~~~l~ 537 (1057)
T PLN02919 530 DLVEAALQ 537 (1057)
T ss_pred HHHHHHHH
Confidence 88888765
No 36
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.83 E-value=3.3e-20 Score=145.27 Aligned_cols=127 Identities=18% Similarity=0.242 Sum_probs=97.9
Q ss_pred ccCCeEeecCCCCcccCCCCC-CcEE-EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHH
Q psy299 44 TVYDFTVKNIKGEDVPLSTYK-GHVL-VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQIC 121 (240)
Q Consensus 44 ~~p~f~l~d~~G~~v~ls~~~-gk~v-lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~ 121 (240)
.+|+|+++|.+|+.++++++. ++++ |++||++|||+|+.++|.|++++++++++|+.+|+|+.| +.+...
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~--------~~~~~~ 72 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGEGPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPE--------SPEKLE 72 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcCCCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCC--------CHHHHH
Confidence 479999999999999999875 4554 555579999999999999999999999989999999976 566777
Q ss_pred HHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCc-------------------ccccccccceEEEEcCCCCeEEec
Q psy299 122 EFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGT-------------------LVDAIKWNFTKFIVDKNGVPVERH 182 (240)
Q Consensus 122 ~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~-------------------~~~~v~~~P~~~lID~~G~Iv~~~ 182 (240)
++.++++++||++ .|..+ .+++.++...... ........|.+||||++|+|++.+
T Consensus 73 ~~~~~~~~~~p~~--~D~~~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g~i~~~~ 146 (149)
T cd02970 73 AFDKGKFLPFPVY--ADPDR----KLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDGTILFAH 146 (149)
T ss_pred HHHHhcCCCCeEE--ECCch----hHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCCeEEEEe
Confidence 8999999999999 44332 3445544321110 011223568999999999999987
Q ss_pred cC
Q psy299 183 AA 184 (240)
Q Consensus 183 ~~ 184 (240)
.+
T Consensus 147 ~~ 148 (149)
T cd02970 147 VD 148 (149)
T ss_pred cC
Confidence 54
No 37
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.83 E-value=8.8e-20 Score=151.24 Aligned_cols=158 Identities=12% Similarity=0.184 Sum_probs=110.3
Q ss_pred CCcccCCeEeecCCCCcccCCCCCC-cEE-EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHH
Q psy299 41 NAETVYDFTVKNIKGEDVPLSTYKG-HVL-VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDAD 118 (240)
Q Consensus 41 ~g~~~p~f~l~d~~G~~v~ls~~~g-k~v-lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e 118 (240)
.|+.+|+|++.+.+| .+++++++| |++ |++||++|||.|..+++.|++++++++++|+.|++||+| +.+
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D--------~~~ 71 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDSWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVD--------SVE 71 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCCEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECC--------CHH
Confidence 488999999999998 589999998 654 558899999999999999999999999999999999988 455
Q ss_pred HHHHHHHh------cCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCC----Cc
Q psy299 119 QICEFTKK------KNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANA----SP 188 (240)
Q Consensus 119 ~~~~~~~~------~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~----~~ 188 (240)
..+++.+. .+++||++ .|..+ .+...++...... + .....|.+||||++|+|+..+.+.. +.
T Consensus 72 ~~~~~~~~i~~~~~~~~~fpil--~D~~~----~ia~~yg~~~~~~-~-~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~ 143 (203)
T cd03016 72 SHIKWIEDIEEYTGVEIPFPII--ADPDR----EVAKLLGMIDPDA-G-STLTVRAVFIIDPDKKIRLILYYPATTGRNF 143 (203)
T ss_pred HHHHHHhhHHHhcCCCCceeEE--ECchH----HHHHHcCCccccC-C-CCceeeEEEEECCCCeEEEEEecCCCCCCCH
Confidence 55554443 68999999 34332 2334443321100 0 0112367899999999998774422 33
Q ss_pred cchHHHHHHhcccC------CCCcceeEEEEcC
Q psy299 189 ASLIPHIEILGRTS------AIKWNFTKFIVDK 215 (240)
Q Consensus 189 ~~l~~~L~~ll~~~------~i~~~~~~~~i~~ 215 (240)
+++.+.|+.+-... +..|.=.+-+|..
T Consensus 144 ~ell~~l~~lq~~~~~~~~~p~~w~~g~~~~~~ 176 (203)
T cd03016 144 DEILRVVDALQLTDKHKVATPANWKPGDDVIVP 176 (203)
T ss_pred HHHHHHHHHHhhHhhcCcCcCCCCCCCCceecC
Confidence 45666666554321 4467655555543
No 38
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.83 E-value=7.5e-20 Score=156.12 Aligned_cols=181 Identities=14% Similarity=0.161 Sum_probs=122.3
Q ss_pred hhhhcccccccccccccccCCcccCCeEeec-CCCC--cccCCCC-CCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHhh
Q psy299 22 WKNAETVYDFTSMADDSWKNAETVYDFTVKN-IKGE--DVPLSTY-KGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRD 96 (240)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~g~~~p~f~l~d-~~G~--~v~ls~~-~gk~vlv~F~-atwCp~C~~~~~~L~~l~~~~~~ 96 (240)
|++......... ......+|+++|+|++.+ .+|. .++|+++ +||++||+|| ++|||+|..|++.|+++++++++
T Consensus 52 ~~~~~~~~~~~~-~~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~ 130 (261)
T PTZ00137 52 VRNYSTSEGLCN-TVTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEE 130 (261)
T ss_pred HHhccCCccccc-ccccccCCCCCCCCEeecccCCCceEEeHHHHcCCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Confidence 444444333322 334457999999999987 5664 5899997 8988888887 89999999999999999999999
Q ss_pred cCcEEEEeecCCCCCCCCCCHHHHHHHHHh-------cCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceE
Q psy299 97 RGLRILAFPCNQFGGQEPGDADQICEFTKK-------KNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTK 169 (240)
Q Consensus 97 ~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~-------~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~ 169 (240)
+|++|++||.| ++...+++.+. .+++||++. |.. ..+.+.++.... . + ...|++
T Consensus 131 ~gv~VigIS~D--------s~~~h~aw~~~~~~~~g~~~l~fPlLs--D~~----~~iakayGv~~~--~--g-~a~R~t 191 (261)
T PTZ00137 131 RGVKVLGVSVD--------SPFSHKAWKELDVRQGGVSPLKFPLFS--DIS----REVSKSFGLLRD--E--G-FSHRAS 191 (261)
T ss_pred CCCEEEEEECC--------CHHHHHHHHhhhhhhccccCcceEEEE--cCC----hHHHHHcCCCCc--C--C-ceecEE
Confidence 99999999987 55555655542 678999994 432 223344432211 0 1 134799
Q ss_pred EEEcCCCCeEEeccCCC----CccchHHHHHHhcc---cC---CCCcceeEEEEcCCCCeeee
Q psy299 170 FIVDKNGVPVERHAANA----SPASLIPHIEILGR---TS---AIKWNFTKFIVDKNGAPVER 222 (240)
Q Consensus 170 ~lID~~G~Iv~~~~~~~----~~~~l~~~L~~ll~---~~---~i~~~~~~~~i~~~~~~~~~ 222 (240)
||||++|+|++.+.... +.+++.+.|+.+-- .+ +..|.-.+-.|.+....+..
T Consensus 192 FIID~dG~I~~~~~~~~~~gr~v~eiLr~l~alq~~~~~g~~cPanW~~g~~~~~~~~~~~~~ 254 (261)
T PTZ00137 192 VLVDKAGVVKHVAVYDLGLGRSVDETLRLFDAVQFAEKTGNVCPVNWKQGDQAMKPDSQSVKQ 254 (261)
T ss_pred EEECCCCEEEEEEEeCCCCCCCHHHHHHHHHHhchhhhcCCCcCCCCCcCCceecCCcccHHH
Confidence 99999999999773222 33445555554431 11 45777666666665444433
No 39
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.82 E-value=8.4e-20 Score=138.85 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=101.9
Q ss_pred CCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q psy299 46 YDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTK 125 (240)
Q Consensus 46 p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~ 125 (240)
|+|+++|.+|+.+++++++||+++|+||++||++|+.++|.|++++++ +.+++|+.|. ++.+.++++++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~------~~~~~~~~~~~ 69 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRS------GDDGAVARFMQ 69 (123)
T ss_pred CCceeecCCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccC------CCHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999876 6688888762 47899999999
Q ss_pred hcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHH
Q psy299 126 KKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPH 194 (240)
Q Consensus 126 ~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~ 194 (240)
+++++||++ .|..+ .+.+.+ ++..+|+.+|||++| |++++.|..+++.|.+.
T Consensus 70 ~~~~~~~~~--~d~~~----~~~~~~----------~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 70 KKGYGFPVI--NDPDG----VISARW----------GVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred HcCCCccEE--ECCCc----HHHHhC----------CCCcccEEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 999999988 33222 233332 566679999999999 99999988888777654
No 40
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.82 E-value=2.5e-19 Score=149.58 Aligned_cols=144 Identities=15% Similarity=0.148 Sum_probs=101.1
Q ss_pred cccCCcccCCeEeecCCCCcccCCCCCCcEEEE-EEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCC
Q psy299 38 SWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVI-VNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGD 116 (240)
Q Consensus 38 ~~~~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv-~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~ 116 (240)
....|+++|+|++.+.+|+...+++++||+++| +||++|||+|..+++.|++++++++++|++|++||+| +
T Consensus 6 ~~~iG~~aPdF~l~~~~G~~~l~~~~~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~D--------s 77 (215)
T PRK13191 6 IPLIGEKFPEMEVITTHGKIKLPDDYKGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVD--------S 77 (215)
T ss_pred cccCCCcCCCCEeecCCCCEEcHHHhCCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECC--------C
Confidence 446899999999999999744335589997665 8899999999999999999999999999999999998 4
Q ss_pred HHH---HHHHHHh---cCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCC----
Q psy299 117 ADQ---ICEFTKK---KNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANA---- 186 (240)
Q Consensus 117 ~e~---~~~~~~~---~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~---- 186 (240)
... +.++.++ .+++||++ .|..+. +...++...... .....|.+||||++|+|+..+.+..
T Consensus 78 ~~~h~aw~~~~~~~~~~~i~fPll--sD~~~~----ia~~ygv~~~~~---~~~~~r~tfIID~~G~Ir~~~~~~~~~gr 148 (215)
T PRK13191 78 NISHIEWVMWIEKNLKVEVPFPII--ADPMGN----VAKRLGMIHAES---STATVRAVFIVDDKGTVRLILYYPMEIGR 148 (215)
T ss_pred HHHHHHHHhhHHHhcCCCCceEEE--ECCchH----HHHHcCCccccc---CCceeEEEEEECCCCEEEEEEecCCCCCC
Confidence 444 4444443 57889999 444332 333333211100 0113478999999999999763322
Q ss_pred CccchHHHHHHh
Q psy299 187 SPASLIPHIEIL 198 (240)
Q Consensus 187 ~~~~l~~~L~~l 198 (240)
+.+++...|+.+
T Consensus 149 ~~~eilr~l~al 160 (215)
T PRK13191 149 NIDEILRAIRAL 160 (215)
T ss_pred CHHHHHHHHHHh
Confidence 233444555443
No 41
>PRK15000 peroxidase; Provisional
Probab=99.82 E-value=1.7e-19 Score=149.04 Aligned_cols=129 Identities=15% Similarity=0.181 Sum_probs=94.1
Q ss_pred cCCcccCCeEeecCC--CCc---ccCCCC-CCcEEEEEEecC-CCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCC
Q psy299 40 KNAETVYDFTVKNIK--GED---VPLSTY-KGHVLVIVNVAS-RCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQ 112 (240)
Q Consensus 40 ~~g~~~p~f~l~d~~--G~~---v~ls~~-~gk~vlv~F~at-wCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~ 112 (240)
.+|+++|+|++.+.. |+. ++++++ +||++||+||+. |||+|+.+++.|++++++++++|+.|++||+|
T Consensus 3 ~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D----- 77 (200)
T PRK15000 3 LVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFD----- 77 (200)
T ss_pred cCCCcCCCCEeecccCCCceeeeeeHHHHhCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-----
Confidence 479999999999874 443 455555 899999999985 99999999999999999999999999999987
Q ss_pred CCCCHHHHHHHH----HhcC---cceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCC
Q psy299 113 EPGDADQICEFT----KKKN---VQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAAN 185 (240)
Q Consensus 113 ~~~~~e~~~~~~----~~~~---~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~ 185 (240)
+....+.+. ++.+ ++||++ .|..+. +.+.++..... . ++ ..|.+||||++|+|+..+.+.
T Consensus 78 ---~~~~~~~w~~~~~~~~g~~~i~fpll--sD~~~~----ia~~ygv~~~~-~--g~-~~r~tfiID~~G~I~~~~~~~ 144 (200)
T PRK15000 78 ---SEFVHNAWRNTPVDKGGIGPVKYAMV--ADVKRE----IQKAYGIEHPD-E--GV-ALRGSFLIDANGIVRHQVVND 144 (200)
T ss_pred ---CHHHHHHHHhhHHHhCCccccCceEE--ECCCcH----HHHHcCCccCC-C--Cc-EEeEEEEECCCCEEEEEEecC
Confidence 455544443 3344 689999 444332 33333321110 0 11 358999999999999987554
Q ss_pred C
Q psy299 186 A 186 (240)
Q Consensus 186 ~ 186 (240)
.
T Consensus 145 ~ 145 (200)
T PRK15000 145 L 145 (200)
T ss_pred C
Confidence 3
No 42
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.81 E-value=1.2e-19 Score=140.19 Aligned_cols=111 Identities=18% Similarity=0.190 Sum_probs=85.6
Q ss_pred cCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc--CcEEEEeecCCCCCCCCCCHHHHHHHHHhcCc
Q psy299 52 NIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR--GLRILAFPCNQFGGQEPGDADQICEFTKKKNV 129 (240)
Q Consensus 52 d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~--~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~ 129 (240)
|.+ +.+++++++||++||+||++||++|+.++|.|++++++++++ ++.|++|+.| .+.+.+++|+++++
T Consensus 5 ~~~-~~v~l~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d-------~~~~~~~~~~~~~~- 75 (132)
T cd02964 5 DGE-GVVPVSALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRD-------RSEESFNEYFSEMP- 75 (132)
T ss_pred cCC-ccccHHHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecC-------CCHHHHHHHHhcCC-
Confidence 444 589999999999999999999999999999999999999875 7999999988 46789999999987
Q ss_pred ceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEecc
Q psy299 130 QFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHA 183 (240)
Q Consensus 130 ~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~ 183 (240)
.++.+...+ ......+.+.+ ++..+|+++|||++|+|+.+..
T Consensus 76 ~~~~~~~~d--~~~~~~~~~~~----------~v~~iPt~~lid~~G~iv~~~~ 117 (132)
T cd02964 76 PWLAVPFED--EELRELLEKQF----------KVEGIPTLVVLKPDGDVVTTNA 117 (132)
T ss_pred CeEeeccCc--HHHHHHHHHHc----------CCCCCCEEEEECCCCCEEchhH
Confidence 554431100 00011122211 5667799999999999997653
No 43
>PRK13189 peroxiredoxin; Provisional
Probab=99.81 E-value=8.5e-19 Score=147.15 Aligned_cols=155 Identities=15% Similarity=0.216 Sum_probs=107.7
Q ss_pred cccCCcccCCeEeecCCCCcccCCC-CCCcEEE-EEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCC
Q psy299 38 SWKNAETVYDFTVKNIKGEDVPLST-YKGHVLV-IVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPG 115 (240)
Q Consensus 38 ~~~~g~~~p~f~l~d~~G~~v~ls~-~~gk~vl-v~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~ 115 (240)
.+.+|..+|+|++.+.+|. +++++ ++||+++ ++||++|||+|..+++.|++++++++++|++||+||+|
T Consensus 8 ~~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D-------- 78 (222)
T PRK13189 8 MPLIGDKFPEFEVKTTHGP-IKLPDDYKGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSID-------- 78 (222)
T ss_pred cccCCCcCCCcEeEcCCCC-EeeHHHhCCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECC--------
Confidence 3568999999999999995 67776 5999654 57799999999999999999999999999999999998
Q ss_pred CHHHHHHHHHh------cCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCC---
Q psy299 116 DADQICEFTKK------KNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANA--- 186 (240)
Q Consensus 116 ~~e~~~~~~~~------~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~--- 186 (240)
+....+++.+. .+++||++ .|..+ .+...++........ ...|++||||++|+|+....+..
T Consensus 79 ~~~~h~aw~~~~~~~~g~~i~fPll--sD~~~----~ia~~ygv~~~~~~~---~~~r~tfIID~~G~Ir~~~~~~~~~g 149 (222)
T PRK13189 79 QVFSHIKWVEWIKEKLGVEIEFPII--ADDRG----EIAKKLGMISPGKGT---NTVRAVFIIDPKGIIRAILYYPQEVG 149 (222)
T ss_pred CHHHHHHHHHhHHHhcCcCcceeEE--EcCcc----HHHHHhCCCccccCC---CceeEEEEECCCCeEEEEEecCCCCC
Confidence 45544444432 35789998 44333 233444332111000 13578999999999998764322
Q ss_pred -CccchHHHHHHhcccC------CCCcceeE
Q psy299 187 -SPASLIPHIEILGRTS------AIKWNFTK 210 (240)
Q Consensus 187 -~~~~l~~~L~~ll~~~------~i~~~~~~ 210 (240)
+.+++...|+.+.... +..|.=..
T Consensus 150 r~~~eilr~l~alq~~~~~~~~~p~~w~~g~ 180 (222)
T PRK13189 150 RNMDEILRLVKALQTSDEKGVATPANWPPND 180 (222)
T ss_pred CCHHHHHHHHHHhhhHhhcCcCcCCCCCCCC
Confidence 3445666666554211 45775444
No 44
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.81 E-value=1e-19 Score=147.54 Aligned_cols=134 Identities=11% Similarity=0.081 Sum_probs=100.3
Q ss_pred ccccCCcccCCeEeecC----------CCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEE-----
Q psy299 37 DSWKNAETVYDFTVKNI----------KGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRI----- 101 (240)
Q Consensus 37 ~~~~~g~~~p~f~l~d~----------~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~v----- 101 (240)
..+..|+++|.+.+.|- +.+.+++++++||+.||+|||+||++|+.+.|.|.++ +++|+.+
T Consensus 21 ~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~~~~~~~y~~ 96 (184)
T TIGR01626 21 HNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELAGKVRVVHHIAGRTSAKEXNASLIDAI----KAAKFPPVKYQT 96 (184)
T ss_pred hhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcCCCEEEEEEEecCCChhhccchHHHHH----HHcCCCcccccc
Confidence 45678899998877653 3456777889999999999999999999999999999 4457888
Q ss_pred -EEeecCCCCCCCCCCHHHHHHHHHhcCccee---eeEeeecCCCCCchHHHHHhhhcCCcccccccccceE-EEEcCCC
Q psy299 102 -LAFPCNQFGGQEPGDADQICEFTKKKNVQFD---LFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTK-FIVDKNG 176 (240)
Q Consensus 102 -i~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp---~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~-~lID~~G 176 (240)
++|+.|+ ...+...-++.|+++.+..|| ++ .|..+... ..+ ++...|++ ||||++|
T Consensus 97 t~~IN~dd---~~~~~~~fVk~fie~~~~~~P~~~vl--lD~~g~v~----~~~----------gv~~~P~T~fVIDk~G 157 (184)
T TIGR01626 97 TTIINADD---AIVGTGMFVKSSAKKGKKENPWSQVV--LDDKGAVK----NAW----------QLNSEDSAIIVLDKTG 157 (184)
T ss_pred eEEEECcc---chhhHHHHHHHHHHHhcccCCcceEE--ECCcchHH----Hhc----------CCCCCCceEEEECCCC
Confidence 9999872 111233446677777788887 66 44433221 111 57777888 8999999
Q ss_pred CeEEeccCCCCccchHH
Q psy299 177 VPVERHAANASPASLIP 193 (240)
Q Consensus 177 ~Iv~~~~~~~~~~~l~~ 193 (240)
+|++++.|..+.+++.+
T Consensus 158 kVv~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 158 KVKFVKEGALSDSDIQT 174 (184)
T ss_pred cEEEEEeCCCCHHHHHH
Confidence 99999999888776654
No 45
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.80 E-value=1.4e-19 Score=139.52 Aligned_cols=111 Identities=21% Similarity=0.279 Sum_probs=86.0
Q ss_pred eecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc--CcEEEEeecCCCCCCCCCCHHHHHHHHHhc
Q psy299 50 VKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR--GLRILAFPCNQFGGQEPGDADQICEFTKKK 127 (240)
Q Consensus 50 l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~--~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~ 127 (240)
|.|.+|+.+++++++||++||+||++||++|+.++|.|+++++++.++ ++.|++|+.| .+.+.++++++++
T Consensus 3 l~~~~G~~v~l~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d-------~~~~~~~~~~~~~ 75 (131)
T cd03009 3 LLRNDGGKVPVSSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWD-------RDEESFNDYFSKM 75 (131)
T ss_pred ccccCCCCccHHHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECC-------CCHHHHHHHHHcC
Confidence 568999999999999999999999999999999999999999999875 7999999988 4678888888775
Q ss_pred Cc-ceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEec
Q psy299 128 NV-QFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERH 182 (240)
Q Consensus 128 ~~-~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~ 182 (240)
+. .+|+. + .+....+.+.+ ++..+|+++|||++|+|+.+.
T Consensus 76 ~~~~~~~~---~--~~~~~~~~~~~----------~v~~~P~~~lid~~G~i~~~~ 116 (131)
T cd03009 76 PWLAVPFS---D--RERRSRLNRTF----------KIEGIPTLIILDADGEVVTTD 116 (131)
T ss_pred CeeEcccC---C--HHHHHHHHHHc----------CCCCCCEEEEECCCCCEEccc
Confidence 42 11211 0 01111222222 566779999999999999765
No 46
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.80 E-value=5.7e-19 Score=130.71 Aligned_cols=116 Identities=26% Similarity=0.453 Sum_probs=97.6
Q ss_pred CeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHh
Q psy299 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKK 126 (240)
Q Consensus 47 ~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~ 126 (240)
+|.+.+.+|+.+++++++||++||.||++||+.|+..++.|.++.+++++.++.+++|++|. .+.+.+++++++
T Consensus 1 ~~~~~~~~g~~~~~~~~~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~------~~~~~~~~~~~~ 74 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD------DDPAAVKAFLKK 74 (116)
T ss_pred CccccCCCCCEeehHHcCCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC------CCHHHHHHHHHH
Confidence 47888999999999999999999999999999999999999999999987789999999882 159999999999
Q ss_pred cCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccC
Q psy299 127 KNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAA 184 (240)
Q Consensus 127 ~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~ 184 (240)
++.+|+++. +.. ..+...+ ++...|+++|+|++|+++.++.|
T Consensus 75 ~~~~~~~~~--~~~----~~~~~~~----------~~~~~P~~~l~d~~g~v~~~~~g 116 (116)
T cd02966 75 YGITFPVLL--DPD----GELAKAY----------GVRGLPTTFLIDRDGRIRARHVG 116 (116)
T ss_pred cCCCcceEE--cCc----chHHHhc----------CcCccceEEEECCCCcEEEEecC
Confidence 999999883 321 2233332 44567999999999999988653
No 47
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.79 E-value=3.7e-19 Score=143.65 Aligned_cols=123 Identities=15% Similarity=0.286 Sum_probs=94.8
Q ss_pred cCCcccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHH
Q psy299 40 KNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQ 119 (240)
Q Consensus 40 ~~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~ 119 (240)
.....-|+|++. +|+.+++++++ ||+||++|||+|+.++|.|++++++| ++.|++|++|. +.
T Consensus 50 ~~~~~~~~f~l~--dG~~v~lsd~~----lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~-------~~-- 111 (181)
T PRK13728 50 TEKPAPRWFRLS--NGRQVNLADWK----VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDG-------QG-- 111 (181)
T ss_pred cCCCCCCccCCC--CCCEeehhHce----EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCC-------CC--
Confidence 455677888875 99999999998 78899999999999999999999997 59999999872 11
Q ss_pred HHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEE-eccCCCCccchHHHHHHh
Q psy299 120 ICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVE-RHAANASPASLIPHIEIL 198 (240)
Q Consensus 120 ~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~-~~~~~~~~~~l~~~L~~l 198 (240)
...||++ .+..+ ..+...++. ....+|++||||++|+++. .+.|..+.++|.+.|+++
T Consensus 112 --------~~~fPv~--~dd~~---~~~~~~~g~--------~~~~iPttfLId~~G~i~~~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 112 --------DTAFPEA--LPAPP---DVMQTFFPN--------IPVATPTTFLVNVNTLEALPLLQGATDAAGFMARMDTV 170 (181)
T ss_pred --------CCCCceE--ecCch---hHHHHHhCC--------CCCCCCeEEEEeCCCcEEEEEEECCCCHHHHHHHHHHH
Confidence 2578988 32111 122223210 1246799999999999974 788888888899999998
Q ss_pred ccc
Q psy299 199 GRT 201 (240)
Q Consensus 199 l~~ 201 (240)
++-
T Consensus 171 l~~ 173 (181)
T PRK13728 171 LQM 173 (181)
T ss_pred Hhh
Confidence 865
No 48
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.79 E-value=2e-18 Score=142.64 Aligned_cols=145 Identities=12% Similarity=0.107 Sum_probs=102.7
Q ss_pred ccCCcccCCeEeec----CCCCcccCCCCCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCC
Q psy299 39 WKNAETVYDFTVKN----IKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQE 113 (240)
Q Consensus 39 ~~~g~~~p~f~l~d----~~G~~v~ls~~~gk~vlv~F~-atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~ 113 (240)
...|+++|+|++.+ .+|+.++|++++||++||+|| ++||++|..+++.|++++++|+++|+.||+||+|
T Consensus 6 ~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d------ 79 (199)
T PTZ00253 6 AKINHPAPSFEEVALMPNGSFKKISLSSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMD------ 79 (199)
T ss_pred cccCCcCCCCEeeccccCCCCcEEeHHHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC------
Confidence 46899999999664 566899999999999999999 5789999999999999999999999999999988
Q ss_pred CCCHHHHHHHHH--h-----cCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCC
Q psy299 114 PGDADQICEFTK--K-----KNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANA 186 (240)
Q Consensus 114 ~~~~e~~~~~~~--~-----~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~ 186 (240)
+.....++.. + .+++||++ .|..+ .+.+.++..... .++ ..|.+||||++|+|+..+.+..
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~~~fpll--~D~~~----~ia~~ygv~~~~---~g~-~~r~~fiID~~G~i~~~~~~~~ 147 (199)
T PTZ00253 80 --SEYAHLQWTLQERKKGGLGTMAIPML--ADKTK----SIARSYGVLEEE---QGV-AYRGLFIIDPKGMLRQITVNDM 147 (199)
T ss_pred --CHHHHHHHHhChHhhCCccccccceE--ECcHh----HHHHHcCCcccC---CCc-eEEEEEEECCCCEEEEEEecCC
Confidence 3333333321 1 14789999 33332 233333331110 011 2378899999999999775433
Q ss_pred -CccchHHHHHHhccc
Q psy299 187 -SPASLIPHIEILGRT 201 (240)
Q Consensus 187 -~~~~l~~~L~~ll~~ 201 (240)
....+.+.|+.+.+.
T Consensus 148 ~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 148 PVGRNVEEVLRLLEAF 163 (199)
T ss_pred CCCCCHHHHHHHHHhh
Confidence 333455555555444
No 49
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.77 E-value=2.2e-18 Score=125.32 Aligned_cols=94 Identities=23% Similarity=0.278 Sum_probs=74.5
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHh-hcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFR-DRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~-~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
||+++|+||++||++|+.++|.|++++++|+ +.++.+|+||+| .+.++++++.++.+.++..+.. ....
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d-------~~~~~~~~~~~~~~~~~~~~~~---~~~~ 70 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLD-------EDEEEWKKFLKKNNFPWYNVPF---DDDN 70 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-S-------SSHHHHHHHHHTCTTSSEEEET---TTHH
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeC-------CCHHHHHHHHHhcCCCceEEee---Ccch
Confidence 7999999999999999999999999999999 557999999998 5789999999999887766521 1111
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCe
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVP 178 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~I 178 (240)
...+.+.+ ++..+|+++|+|++|+|
T Consensus 71 ~~~l~~~~----------~i~~iP~~~lld~~G~I 95 (95)
T PF13905_consen 71 NSELLKKY----------GINGIPTLVLLDPDGKI 95 (95)
T ss_dssp HHHHHHHT----------T-TSSSEEEEEETTSBE
T ss_pred HHHHHHHC----------CCCcCCEEEEECCCCCC
Confidence 22333333 67778999999999987
No 50
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=99.76 E-value=3.1e-18 Score=138.64 Aligned_cols=137 Identities=17% Similarity=0.215 Sum_probs=105.0
Q ss_pred CCcccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCC-CcHHHHHHHHHHHHHHhhc--CcEEEEeecCCCCCCCCCCH
Q psy299 41 NAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCG-YTGKHYKELVELDEKFRDR--GLRILAFPCNQFGGQEPGDA 117 (240)
Q Consensus 41 ~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp-~C~~~~~~L~~l~~~~~~~--~v~vi~Vs~D~~~~~~~~~~ 117 (240)
.....|+|+|+|.+|+.+++++++||++||+|.+|.|| .|+..+..|+++++++++. ++.+++||+| +++|++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvD----P~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVD----PERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESS----TTTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeC----CCCCCH
Confidence 66788999999999999999999999999999999999 7999999999999999975 6999999999 788999
Q ss_pred HHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcC------CcccccccccceEEEEcCCCCeEEeccC
Q psy299 118 DQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQG------GTLVDAIKWNFTKFIVDKNGVPVERHAA 184 (240)
Q Consensus 118 e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~------~~~~~~v~~~P~~~lID~~G~Iv~~~~~ 184 (240)
+.+++|++.++.+|..|.. .. .....+.+.++.... ....+.+.+...+||||++|+|+..|.+
T Consensus 104 ~~L~~Y~~~~~~~~~~ltg--~~-~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 104 EVLKKYAKKFGPDFIGLTG--SR-EEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp HHHHHHHHCHTTTCEEEEE--EH-HHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred HHHHHHHHhcCCCcceeEe--CH-HHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence 9999999999998877732 11 112233333332211 1112345566788999999999998753
No 51
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=99.73 E-value=5.6e-17 Score=134.62 Aligned_cols=148 Identities=12% Similarity=0.170 Sum_probs=117.6
Q ss_pred CeEeecCCCCcccCCCCCCcEEEEEEecCCCC-CcHHHHHHHHHHHHHHh-h--cCcEEEEeecCCCCCCCCCCHHHHHH
Q psy299 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCG-YTGKHYKELVELDEKFR-D--RGLRILAFPCNQFGGQEPGDADQICE 122 (240)
Q Consensus 47 ~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp-~C~~~~~~L~~l~~~~~-~--~~v~vi~Vs~D~~~~~~~~~~e~~~~ 122 (240)
+|+++|.+|+.+++.+++||++||+|.+|+|| .|+.++..|.++.+++. . .++.++.||+| +++|+++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvD----PerDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVD----PERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEEC----CCCCCHHHHHH
Confidence 79999999999999999999999999999999 89999999999999999 3 36899999999 89999999999
Q ss_pred HHH-hcCcceeeeEeeecCCCCCchHHHHHhhhc--CCc---ccccccccceEEEEcCCCCeEEeccCCCCccchHHHHH
Q psy299 123 FTK-KKNVQFDLFEKINVNGDNAHPLWKFLKHKQ--GGT---LVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIE 196 (240)
Q Consensus 123 ~~~-~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~--~~~---~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~ 196 (240)
|+. .+...|..+. . ..+....+.+.++... ... ....+.+...+|+||++|+++..+.+..+++.+.+.|+
T Consensus 125 Y~~~~~~~~~~~lt--g-~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~~~~~~~i~~~l~ 201 (207)
T COG1999 125 YAELNFDPRWIGLT--G-TPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDYGEPPEEIAADLK 201 (207)
T ss_pred HhcccCCCCeeeee--C-CHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecCCCChHHHHHHHH
Confidence 999 4444443331 1 1223334445444432 111 12356666778999999999999988888889999999
Q ss_pred Hhccc
Q psy299 197 ILGRT 201 (240)
Q Consensus 197 ~ll~~ 201 (240)
.++++
T Consensus 202 ~l~~~ 206 (207)
T COG1999 202 KLLKE 206 (207)
T ss_pred HHhhc
Confidence 99875
No 52
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=99.73 E-value=3.5e-17 Score=121.65 Aligned_cols=107 Identities=64% Similarity=1.129 Sum_probs=99.6
Q ss_pred cCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHH
Q psy299 45 VYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFT 124 (240)
Q Consensus 45 ~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~ 124 (240)
+.+|+++|++|+.++|+.++||++||.-.|+.|+... ....|++++++|+++|+.|+++.++.|+++++++.+++++++
T Consensus 1 iYdf~~~~~~G~~v~l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~~~ 79 (108)
T PF00255_consen 1 IYDFSAKDIDGKPVSLSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKEFC 79 (108)
T ss_dssp GGGSEEEBTTSSEEEGGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHHHH
T ss_pred CcceeeeCCCCCEECHHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHHHH
Confidence 4689999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred Hh-cCcceeeeEeeecCCCCCchHHHHHh
Q psy299 125 KK-KNVQFDLFEKINVNGDNAHPLWKFLK 152 (240)
Q Consensus 125 ~~-~~~~fp~~~~~d~~~~~~~~l~~~~~ 152 (240)
.. ++.+||++..++.+|..++++|++++
T Consensus 80 ~~~~~~~F~vf~ki~VnG~~ahPly~~LK 108 (108)
T PF00255_consen 80 KEKFGVTFPVFEKIDVNGPDAHPLYKYLK 108 (108)
T ss_dssp CHCHT-SSEEBS-BBSSSTTB-HHHHHHH
T ss_pred HhccCCcccceEEEEecCCCCcHHHHHhC
Confidence 87 89999999999999999999999874
No 53
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.72 E-value=8.4e-17 Score=127.91 Aligned_cols=130 Identities=18% Similarity=0.204 Sum_probs=98.1
Q ss_pred CCcccCCeEeecCC---CCcccCCC-CCCcEEEEEE-ecCCCCCcHHH-HHHHHHHHHHHhhcCc-EEEEeecCCCCCCC
Q psy299 41 NAETVYDFTVKNIK---GEDVPLST-YKGHVLVIVN-VASRCGYTGKH-YKELVELDEKFRDRGL-RILAFPCNQFGGQE 113 (240)
Q Consensus 41 ~g~~~p~f~l~d~~---G~~v~ls~-~~gk~vlv~F-~atwCp~C~~~-~~~L~~l~~~~~~~~v-~vi~Vs~D~~~~~~ 113 (240)
+|+.+|+|++.+.+ |+.++|++ ++||++||+| ++.|||.|..+ ++.+++.+++++++|+ .|++||.|
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D------ 74 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGKKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVN------ 74 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCCcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECC------
Confidence 58999999999986 99999999 6887655555 59999999999 9999999999999999 59999987
Q ss_pred CCCHHHHHHHHHhcCc--ceeeeEeeecCCCCCchHHHHHhhhcCCc-ccccccccceEEEEcCCCCeEEeccCC
Q psy299 114 PGDADQICEFTKKKNV--QFDLFEKINVNGDNAHPLWKFLKHKQGGT-LVDAIKWNFTKFIVDKNGVPVERHAAN 185 (240)
Q Consensus 114 ~~~~e~~~~~~~~~~~--~fp~~~~~d~~~~~~~~l~~~~~~~~~~~-~~~~v~~~P~~~lID~~G~Iv~~~~~~ 185 (240)
+.+..++|++++++ +||+++| ..+ .+.+.++...... .+........+|||| +|+|++.+...
T Consensus 75 --~~~~~~~~~~~~~~~~~f~lLsD--~~~----~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~ 140 (155)
T cd03013 75 --DPFVMKAWGKALGAKDKIRFLAD--GNG----EFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEE 140 (155)
T ss_pred --CHHHHHHHHHhhCCCCcEEEEEC--CCH----HHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEec
Confidence 88999999999998 8999943 322 3334443322111 010110124679999 69999977543
No 54
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.68 E-value=9.9e-17 Score=127.01 Aligned_cols=109 Identities=17% Similarity=0.239 Sum_probs=74.8
Q ss_pred CCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeee
Q psy299 55 GEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 55 G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~ 134 (240)
|+.++++++ .||+||++|||+|+.++|.|+++++++ ++.|++|++|. .. . ..||..
T Consensus 44 G~~~~l~~~----~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~-------~~--~--------~~fp~~ 99 (153)
T TIGR02738 44 GRHANQDDY----ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDG-------QG--L--------TGFPDP 99 (153)
T ss_pred chhhhcCCC----EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCC-------Cc--c--------cccccc
Confidence 666666544 499999999999999999999999987 48899999872 11 0 135544
Q ss_pred EeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeE-EeccCCCCccchHHHHHHhc
Q psy299 135 EKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPV-ERHAANASPASLIPHIEILG 199 (240)
Q Consensus 135 ~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv-~~~~~~~~~~~l~~~L~~ll 199 (240)
.+... .....+++ ..++..+|++||||++|+++ .++.|..+.+++++.|+++|
T Consensus 100 --~~~~~---~~~~~~~~-------~~~v~~iPTt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 100 --LPATP---EVMQTFFP-------NPRPVVTPATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred --cCCch---HHHHHHhc-------cCCCCCCCeEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 11111 11111110 00356679999999998864 46778778888888888765
No 55
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.6e-16 Score=124.36 Aligned_cols=143 Identities=20% Similarity=0.308 Sum_probs=106.1
Q ss_pred ccCCcccCCeEeecC-CCC---cccCCCCCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCC
Q psy299 39 WKNAETVYDFTVKNI-KGE---DVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQE 113 (240)
Q Consensus 39 ~~~g~~~p~f~l~d~-~G~---~v~ls~~~gk~vlv~F~-atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~ 113 (240)
..+|+++|+|++... .|. +++++++.|||++++|| +...++|..|+..+++.+++++++|++||++|+|
T Consensus 3 ~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~D------ 76 (194)
T COG0450 3 SLIGKKAPDFTANAVLGGEIFEEITLSDYYGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTD------ 76 (194)
T ss_pred cccCCcCCCcEEEEEecCceeeEEechhhcCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecC------
Confidence 458999999999888 775 89999999999999999 7778999999999999999999999999999998
Q ss_pred CCCHHHHHHHHHh----cC---cceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCC
Q psy299 114 PGDADQICEFTKK----KN---VQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANA 186 (240)
Q Consensus 114 ~~~~e~~~~~~~~----~~---~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~ 186 (240)
+.....++... .+ ++||++ .|.++..+ ..|+++....+. +++ .+||||++|+|+.......
T Consensus 77 --s~fsH~aW~~~~~~~~gi~~i~~Pmi--aD~~~~vs-~~ygvl~~~~g~----a~R---~~FIIDp~g~ir~~~v~~~ 144 (194)
T COG0450 77 --SVFSHKAWKATIREAGGIGKIKFPMI--ADPKGEIA-RAYGVLHPEEGL----ALR---GTFIIDPDGVIRHILVNPL 144 (194)
T ss_pred --cHHHHHHHHhcHHhcCCccceecceE--EcCchhHH-HHcCCcccCCCc----cee---EEEEECCCCeEEEEEEecC
Confidence 66666665543 45 789999 55555433 233333322221 555 5599999999998654333
Q ss_pred ----CccchHHHHHHhc
Q psy299 187 ----SPASLIPHIEILG 199 (240)
Q Consensus 187 ----~~~~l~~~L~~ll 199 (240)
+.+++...|+.+.
T Consensus 145 ~iGRn~dEilR~idAlq 161 (194)
T COG0450 145 TIGRNVDEILRVIDALQ 161 (194)
T ss_pred CCCcCHHHHHHHHHHHH
Confidence 2344444444443
No 56
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.62 E-value=1.2e-15 Score=119.66 Aligned_cols=110 Identities=10% Similarity=0.166 Sum_probs=85.1
Q ss_pred eecCCCCcccCCC--CCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhc
Q psy299 50 VKNIKGEDVPLST--YKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKK 127 (240)
Q Consensus 50 l~d~~G~~v~ls~--~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~ 127 (240)
+.+++++...+++ .+||++||+||++||++|+.+.|.+.+++++++++ +.|+.|.+|. + ...+.++++
T Consensus 3 ~~~~~~~~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~-~~~v~v~vd~-------~--~~~~~~~~~ 72 (142)
T cd02950 3 LEQLAASSTPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQ-VNFVMLNVDN-------P--KWLPEIDRY 72 (142)
T ss_pred hHHHhhccCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccC-eeEEEEEcCC-------c--ccHHHHHHc
Confidence 4455555555544 46899999999999999999999999999999764 8888888761 1 111222222
Q ss_pred CcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCC
Q psy299 128 NVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSA 203 (240)
Q Consensus 128 ~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~ 203 (240)
++..+|+++++|++|+++.+..|..+.++|.+.|++++++..
T Consensus 73 ----------------------------------~V~~iPt~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l~~~~~ 114 (142)
T cd02950 73 ----------------------------------RVDGIPHFVFLDREGNEEGQSIGLQPKQVLAQNLDALVAGEP 114 (142)
T ss_pred ----------------------------------CCCCCCEEEEECCCCCEEEEEeCCCCHHHHHHHHHHHHcCCC
Confidence 455569999999999999999998888889999999997753
No 57
>KOG2792|consensus
Probab=99.55 E-value=5.2e-14 Score=117.34 Aligned_cols=144 Identities=13% Similarity=0.194 Sum_probs=109.1
Q ss_pred CCeEeecCCCCcccCCCCCCcEEEEEEecCCCC-CcHHHHHHHHHHHHHHhhc-CcE--EEEeecCCCCCCCCCCHHHHH
Q psy299 46 YDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCG-YTGKHYKELVELDEKFRDR-GLR--ILAFPCNQFGGQEPGDADQIC 121 (240)
Q Consensus 46 p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp-~C~~~~~~L~~l~~~~~~~-~v~--vi~Vs~D~~~~~~~~~~e~~~ 121 (240)
-+|+|.|.+|+.++-.+|.|||+||+|..|+|| .|+.|+..|.++.+++++. ++. -+.|++| +++|+++.++
T Consensus 120 GpF~L~d~~Gk~~te~df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvD----PeRD~~~~~~ 195 (280)
T KOG2792|consen 120 GPFSLVDHDGKRVTEKDFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVD----PERDSVEVVA 195 (280)
T ss_pred CceEEEecCCCeecccccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeC----cccCCHHHHH
Confidence 679999999999999999999999999999999 8999999999999999986 433 4789999 8999999999
Q ss_pred HHHHhcCcceeeeEeeecCCCCCchHHHH---HhhhcCC-----cccccccccceEEEEcCCCCeEEeccCCCCccchHH
Q psy299 122 EFTKKKNVQFDLFEKINVNGDNAHPLWKF---LKHKQGG-----TLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIP 193 (240)
Q Consensus 122 ~~~~~~~~~fp~~~~~d~~~~~~~~l~~~---~~~~~~~-----~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~ 193 (240)
+|++++.... ++..|.. ....+. ++..... ...+-|-++-..|||||+|+++..++..-+.+++.+
T Consensus 196 eY~~eF~pkl-----lGLTGT~-eqvk~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~ 269 (280)
T KOG2792|consen 196 EYVSEFHPKL-----LGLTGTT-EQVKQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELAD 269 (280)
T ss_pred HHHHhcChhh-----hcccCCH-HHHHHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHH
Confidence 9999887654 2334432 111121 1111110 111123333356899999999999988888888888
Q ss_pred HHHHhc
Q psy299 194 HIEILG 199 (240)
Q Consensus 194 ~L~~ll 199 (240)
.|.+.+
T Consensus 270 ~I~~~v 275 (280)
T KOG2792|consen 270 SILKHV 275 (280)
T ss_pred HHHHHH
Confidence 876654
No 58
>KOG0855|consensus
Probab=99.54 E-value=9.1e-14 Score=108.73 Aligned_cols=145 Identities=20% Similarity=0.277 Sum_probs=112.3
Q ss_pred cccCCcccCCeEeecCCCCcccCCCCCCc-EEEEEEe-cCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCC
Q psy299 38 SWKNAETVYDFTVKNIKGEDVPLSTYKGH-VLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPG 115 (240)
Q Consensus 38 ~~~~g~~~p~f~l~d~~G~~v~ls~~~gk-~vlv~F~-atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~ 115 (240)
.+..|+.+|||+|+|.||..++|.++.|+ ++|++|+ +...|.|..+...++.-|++++..+..|+++|.|
T Consensus 62 ~v~~Gd~iPD~tL~dedg~sisLkkit~nk~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D-------- 133 (211)
T KOG0855|consen 62 KVNKGDAIPDFTLKDEDGKSISLKKITGNKPVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGD-------- 133 (211)
T ss_pred eeecCCcCCCcccccCCCCeeeeeeecCCCcEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccC--------
Confidence 56799999999999999999999999886 7777777 5567899999999999999999999999999987
Q ss_pred CHHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccc-hHHH
Q psy299 116 DADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPAS-LIPH 194 (240)
Q Consensus 116 ~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~-l~~~ 194 (240)
+....+.|+.+++++|-++ .|+.+ ++.+.++.......+-..+ .+|++|+.|.....+.....|+. +.++
T Consensus 134 ~s~sqKaF~sKqnlPYhLL--SDpk~----e~ik~lGa~k~p~gg~~~R---sh~if~kg~~k~~ik~~~isPevsvd~a 204 (211)
T KOG0855|consen 134 DSASQKAFASKQNLPYHLL--SDPKN----EVIKDLGAPKDPFGGLPGR---SHYIFDKGGVKQLIKNNQISPEVSVDEA 204 (211)
T ss_pred chHHHHHhhhhccCCeeee--cCcch----hHHHHhCCCCCCCCCcccc---eEEEEecCCeEEEEEecccCccccHHHH
Confidence 7888999999999999988 34443 3445555544332222232 57899998876666666666655 5666
Q ss_pred HHHhc
Q psy299 195 IEILG 199 (240)
Q Consensus 195 L~~ll 199 (240)
++.+.
T Consensus 205 ~k~~~ 209 (211)
T KOG0855|consen 205 LKFLK 209 (211)
T ss_pred HHHHh
Confidence 55543
No 59
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.52 E-value=8.1e-14 Score=103.17 Aligned_cols=90 Identities=19% Similarity=0.275 Sum_probs=66.1
Q ss_pred CCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecC
Q psy299 61 STYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVN 140 (240)
Q Consensus 61 s~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~ 140 (240)
++.+|+++||.||++||++|+.++|.|+++.+++ .++.++.|+.|. + ....+++++++
T Consensus 11 ~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~-------~-~~~~~l~~~~~------------ 68 (103)
T cd02985 11 KKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDE-------N-DSTMELCRREK------------ 68 (103)
T ss_pred HHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCC-------C-hHHHHHHHHcC------------
Confidence 3456999999999999999999999999999999 358888898761 2 23344444443
Q ss_pred CCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHH
Q psy299 141 GDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIE 196 (240)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~ 196 (240)
+..+|+++++ ++|+++.++.|. .+.+|...+.
T Consensus 69 ----------------------V~~~Pt~~~~-~~G~~v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 69 ----------------------IIEVPHFLFY-KDGEKIHEEEGI-GPDELIGDVL 100 (103)
T ss_pred ----------------------CCcCCEEEEE-eCCeEEEEEeCC-CHHHHHHHHH
Confidence 3445775555 999999988874 4555665554
No 60
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.43 E-value=6e-13 Score=99.85 Aligned_cols=91 Identities=11% Similarity=0.046 Sum_probs=70.9
Q ss_pred CCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCC
Q psy299 62 TYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNG 141 (240)
Q Consensus 62 ~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~ 141 (240)
..+|+++||.||++||++|+...|.+.++.+++++.++.+..|.+|. .. ..++++
T Consensus 21 ~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~-------~~----~l~~~~-------------- 75 (111)
T cd02963 21 KSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGH-------ER----RLARKL-------------- 75 (111)
T ss_pred ccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccc-------cH----HHHHHc--------------
Confidence 44789999999999999999999999999999987678888887651 11 122222
Q ss_pred CCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHh
Q psy299 142 DNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198 (240)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~l 198 (240)
++..+|+++++ ++|+++.+..|..+.+.|.+.|+++
T Consensus 76 --------------------~V~~~Pt~~i~-~~g~~~~~~~G~~~~~~l~~~i~~~ 111 (111)
T cd02963 76 --------------------GAHSVPAIVGI-INGQVTFYHDSSFTKQHVVDFVRKL 111 (111)
T ss_pred --------------------CCccCCEEEEE-ECCEEEEEecCCCCHHHHHHHHhcC
Confidence 34455888888 5999988888877777788887764
No 61
>KOG0910|consensus
Probab=99.40 E-value=1.1e-12 Score=101.76 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=73.4
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
.+.||||+|||+||++|+...|.|+++..+|.++ +++.-|.+|. ..+ ++.+|
T Consensus 60 S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~-~k~~kvdtD~-------~~e----la~~Y---------------- 111 (150)
T KOG0910|consen 60 SDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGK-FKLYKVDTDE-------HPE----LAEDY---------------- 111 (150)
T ss_pred cCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCe-EEEEEEcccc-------ccc----hHhhc----------------
Confidence 4689999999999999999999999999999775 9999998772 111 11111
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhcc
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGR 200 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~ 200 (240)
.|.++|+++++ ++|+.+.++.|..+.+.|.+.|+++++
T Consensus 112 ------------------~I~avPtvlvf-knGe~~d~~vG~~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 112 ------------------EISAVPTVLVF-KNGEKVDRFVGAVPKEQLRSLIKKFLK 149 (150)
T ss_pred ------------------ceeeeeEEEEE-ECCEEeeeecccCCHHHHHHHHHHHhc
Confidence 45666886666 899999999999999999999999875
No 62
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.39 E-value=2.1e-12 Score=95.33 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=65.0
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
.|++++|+||++||++|+...|.+.++++++++..+.++.+..| +. +.++++
T Consensus 16 ~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d--------~~----~~~~~~---------------- 67 (102)
T cd02948 16 NKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD--------TI----DTLKRY---------------- 67 (102)
T ss_pred cCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC--------CH----HHHHHc----------------
Confidence 48999999999999999999999999999998656778888654 12 122333
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHh
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~l 198 (240)
.++..|++ ++.++|+++.+..|. +++.+.+.|+++
T Consensus 68 ------------------~v~~~Pt~-~~~~~g~~~~~~~G~-~~~~~~~~i~~~ 102 (102)
T cd02948 68 ------------------RGKCEPTF-LFYKNGELVAVIRGA-NAPLLNKTITEL 102 (102)
T ss_pred ------------------CCCcCcEE-EEEECCEEEEEEecC-ChHHHHHHHhhC
Confidence 34445764 444799999888774 667788777654
No 63
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.39 E-value=2.8e-12 Score=97.91 Aligned_cols=105 Identities=15% Similarity=0.325 Sum_probs=74.6
Q ss_pred CC-cEEEEEEecCCCCCcHHHHHHHH---HHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeec
Q psy299 64 KG-HVLVIVNVASRCGYTGKHYKELV---ELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINV 139 (240)
Q Consensus 64 ~g-k~vlv~F~atwCp~C~~~~~~L~---~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~ 139 (240)
.| |++||.||++||++|+...+.+. ++.+.+++ ++.++.|++|. +.+ ... |+.
T Consensus 12 ~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~i~~d~-------~~~-~~~--------~~~------ 68 (125)
T cd02951 12 DGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRA-HFVVVYINIDG-------DKE-VTD--------FDG------ 68 (125)
T ss_pred cCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHh-heEEEEEEccC-------Cce-eec--------cCC------
Confidence 47 89999999999999999999885 56666664 58888888762 111 001 110
Q ss_pred CCCCCchHHHHHhhhcCCcccccccccceEEEEcCC-CCeEEeccCCCCccchHHHHHHhccc
Q psy299 140 NGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKN-GVPVERHAANASPASLIPHIEILGRT 201 (240)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~-G~Iv~~~~~~~~~~~l~~~L~~ll~~ 201 (240)
.......+...+ ++..+|+++++|++ |+++.+..|..+.+.+...|+.++++
T Consensus 69 ~~~~~~~l~~~~----------~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 69 EALSEKELARKY----------RVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEYVQEK 121 (125)
T ss_pred CCccHHHHHHHc----------CCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHHHHhh
Confidence 001111222222 56677999999999 89999999988888899999988875
No 64
>KOG2501|consensus
Probab=99.38 E-value=2.1e-12 Score=101.17 Aligned_cols=115 Identities=17% Similarity=0.234 Sum_probs=92.2
Q ss_pred eEeecCCCCcccCC-CCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc--CcEEEEeecCCCCCCCCCCHHHHHHHH
Q psy299 48 FTVKNIKGEDVPLS-TYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR--GLRILAFPCNQFGGQEPGDADQICEFT 124 (240)
Q Consensus 48 f~l~d~~G~~v~ls-~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~--~v~vi~Vs~D~~~~~~~~~~e~~~~~~ 124 (240)
..+.+.+|..+..+ .++||++.++|-|.|||+|+.-.|.|.++++++++. .+.||.||.| .+.+.+..|.
T Consensus 15 ~~l~~~~~~~~~~~~~l~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D-------~~~~~~~~y~ 87 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSD-------RDEESLDEYM 87 (157)
T ss_pred CeeeccCCccchHhHhhCCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecC-------CCHHHHHHHH
Confidence 56778888887776 689999999999999999999999999999999986 4999999998 5899999999
Q ss_pred HhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEec
Q psy299 125 KKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERH 182 (240)
Q Consensus 125 ~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~ 182 (240)
+.+..+|..+-+ ++. ..+-+.. .+.+..+|...++.++|..+-..
T Consensus 88 ~~~~~~W~~iPf----~d~---~~~~l~~------ky~v~~iP~l~i~~~dG~~v~~d 132 (157)
T KOG2501|consen 88 LEHHGDWLAIPF----GDD---LIQKLSE------KYEVKGIPALVILKPDGTVVTED 132 (157)
T ss_pred HhcCCCeEEecC----CCH---HHHHHHH------hcccCcCceeEEecCCCCEehHh
Confidence 998888866622 221 1122211 12577779999999999888655
No 65
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.37 E-value=1.6e-12 Score=112.15 Aligned_cols=110 Identities=14% Similarity=0.146 Sum_probs=81.0
Q ss_pred CCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceee
Q psy299 54 KGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDL 133 (240)
Q Consensus 54 ~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~ 133 (240)
..+...+++++|+++||+||++||++|+.++|.|++++++++ +.|++|++|. +.. -.||.
T Consensus 155 ~~~~~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg---~~Vi~VsvD~-------~~~----------~~fp~ 214 (271)
T TIGR02740 155 KQKDRVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG---IEVLPVSVDG-------GPL----------PGFPN 214 (271)
T ss_pred HHHHHHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC---cEEEEEeCCC-------Ccc----------ccCCc
Confidence 344578899999999999999999999999999999999874 8899999882 111 02554
Q ss_pred eEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCC-CCeEEeccCCCCccchHHHHHHhcc
Q psy299 134 FEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKN-GVPVERHAANASPASLIPHIEILGR 200 (240)
Q Consensus 134 ~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~-G~Iv~~~~~~~~~~~l~~~L~~ll~ 200 (240)
+. .+ ..+...+ ++..+|++||+|++ |++.....|..+.++|.+.+..+..
T Consensus 215 ~~------~d-~~la~~~----------gV~~vPtl~Lv~~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 215 AR------PD-AGQAQQL----------KIRTVPAVFLADPDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred cc------CC-HHHHHHc----------CCCcCCeEEEEECCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 41 11 1122222 57778999999995 5555566677788888888887654
No 66
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.35 E-value=4.4e-12 Score=93.67 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=67.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHH---HHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKEL---VELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVN 140 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L---~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~ 140 (240)
.||++||.||++||++|+...+.+ .++.+.+++ ++.++.|.++ .+......++++++
T Consensus 10 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~-------~~~~~~~~~~~~~~------------ 69 (104)
T cd02953 10 QGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWT-------KNDPEITALLKRFG------------ 69 (104)
T ss_pred cCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecC-------CCCHHHHHHHHHcC------------
Confidence 479999999999999999999887 577777776 6888888765 12222344444333
Q ss_pred CCCCchHHHHHhhhcCCcccccccccceEEEEcC-CCCeEEeccCCCCccchHHHH
Q psy299 141 GDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDK-NGVPVERHAANASPASLIPHI 195 (240)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~-~G~Iv~~~~~~~~~~~l~~~L 195 (240)
+..+|+++++++ +|+++.++.|..+.++|.+.|
T Consensus 70 ----------------------i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 70 ----------------------VFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEAL 103 (104)
T ss_pred ----------------------CCCCCEEEEECCCCCCCCcccccccCHHHHHHHh
Confidence 344589999999 999999988888877776655
No 67
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.32 E-value=2.8e-12 Score=94.43 Aligned_cols=43 Identities=19% Similarity=0.285 Sum_probs=38.4
Q ss_pred CCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEee
Q psy299 61 STYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105 (240)
Q Consensus 61 s~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs 105 (240)
++++||++||.|||+||++|+.+.|.+.++.++++ ++.++.|.
T Consensus 14 ~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd 56 (100)
T cd02999 14 AFNREDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIE 56 (100)
T ss_pred HhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEE
Confidence 46799999999999999999999999999999986 47777774
No 68
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.32 E-value=1.1e-11 Score=90.05 Aligned_cols=86 Identities=14% Similarity=0.194 Sum_probs=65.5
Q ss_pred CCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCC
Q psy299 63 YKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGD 142 (240)
Q Consensus 63 ~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~ 142 (240)
-+|+++||+||++||++|+...|.++++.+.+.+. +.++.|.+|. . ..++++++
T Consensus 10 ~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~-~~~~~vd~~~-------~----~~l~~~~~-------------- 63 (96)
T cd02956 10 STQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQ-FVLAKVNCDA-------Q----PQIAQQFG-------------- 63 (96)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCc-EEEEEEeccC-------C----HHHHHHcC--------------
Confidence 35899999999999999999999999999999764 7788887651 1 12233333
Q ss_pred CCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHH
Q psy299 143 NAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHI 195 (240)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L 195 (240)
+...|++++++ +|+++.++.|..+.+.|.+.|
T Consensus 64 --------------------i~~~Pt~~~~~-~g~~~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 64 --------------------VQALPTVYLFA-AGQPVDGFQGAQPEEQLRQML 95 (96)
T ss_pred --------------------CCCCCEEEEEe-CCEEeeeecCCCCHHHHHHHh
Confidence 34458888996 999998888877776676654
No 69
>PRK09381 trxA thioredoxin; Provisional
Probab=99.31 E-value=1.5e-11 Score=91.50 Aligned_cols=90 Identities=17% Similarity=0.175 Sum_probs=70.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
.+++++|.||++|||+|+...|.++++.+++.+. +.++.+.+|. ... .++++
T Consensus 20 ~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~-~~~~~vd~~~-------~~~----~~~~~---------------- 71 (109)
T PRK09381 20 ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGK-LTVAKLNIDQ-------NPG----TAPKY---------------- 71 (109)
T ss_pred CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCC-cEEEEEECCC-------Chh----HHHhC----------------
Confidence 3789999999999999999999999999999874 8888888762 111 11111
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhcc
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGR 200 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~ 200 (240)
.++..|+++++ ++|+++.+..|..+.++|...|+..|+
T Consensus 72 ------------------~v~~~Pt~~~~-~~G~~~~~~~G~~~~~~l~~~i~~~~~ 109 (109)
T PRK09381 72 ------------------GIRGIPTLLLF-KNGEVAATKVGALSKGQLKEFLDANLA 109 (109)
T ss_pred ------------------CCCcCCEEEEE-eCCeEEEEecCCCCHHHHHHHHHHhcC
Confidence 34445887777 799999998888888888888887663
No 70
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.26 E-value=8.1e-12 Score=93.19 Aligned_cols=106 Identities=20% Similarity=0.247 Sum_probs=67.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHH---HHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDE---KFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVN 140 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~---~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~ 140 (240)
.||++++.||.+|||+|+...+.+.+..+ .+++ ++.++.+.++ ++.+....+....+..++...
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----- 70 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKD-DFQVIFVNID-------DSRDESEAVLDFDGQKNVRLS----- 70 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHC-ECEEEECESH-------SHHHHHHHHHSHTCHSSCHHH-----
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEEEecC-------CcccccccccccccchhhhHH-----
Confidence 58999999999999999988888876444 3333 5888888876 233333344443333221110
Q ss_pred CCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHH
Q psy299 141 GDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHI 195 (240)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L 195 (240)
...+.+.+ ++.++|+.+++|++|+++.+..|..++++|.+.|
T Consensus 71 ---~~~l~~~~----------~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 71 ---NKELAQRY----------GVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp ---HHHHHHHT----------T--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred ---HHHHHHHc----------CCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 11233332 6888899999999999999999999988887664
No 71
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.24 E-value=4.8e-11 Score=89.64 Aligned_cols=79 Identities=11% Similarity=-0.008 Sum_probs=59.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
.++++||.|||+||++|+...|.|.++.+++++. +.++-|.+|. . .+.+++++
T Consensus 13 ~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~-------~----~~la~~~~--------------- 65 (114)
T cd02954 13 EEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDE-------V----PDFNKMYE--------------- 65 (114)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCC-------C----HHHHHHcC---------------
Confidence 4689999999999999999999999999999865 7888887761 1 22333333
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCcc
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPA 189 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~ 189 (240)
+..+|+++++ ++|+++.+..|..+..
T Consensus 66 -------------------V~~iPTf~~f-k~G~~v~~~~G~~~~~ 91 (114)
T cd02954 66 -------------------LYDPPTVMFF-FRNKHMKIDLGTGNNN 91 (114)
T ss_pred -------------------CCCCCEEEEE-ECCEEEEEEcCCCCCc
Confidence 4445776666 7999999887765543
No 72
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.23 E-value=1.1e-10 Score=89.13 Aligned_cols=88 Identities=14% Similarity=0.133 Sum_probs=65.3
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
.|+.++|+|+++|||+|+...|.|.++.++ .++.++.|.+|.....+..+.+.+.++.+.+++..
T Consensus 22 ~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~------------ 86 (122)
T TIGR01295 22 KKETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPT------------ 86 (122)
T ss_pred cCCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCcc------------
Confidence 367899999999999999999999999887 23678888877432223334457777777776543
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCC
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAAN 185 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~ 185 (240)
.+.++|+++++ ++|+.+.+..|.
T Consensus 87 ------------------~i~~~PT~v~~-k~Gk~v~~~~G~ 109 (122)
T TIGR01295 87 ------------------SFMGTPTFVHI-TDGKQVSVRCGS 109 (122)
T ss_pred ------------------cCCCCCEEEEE-eCCeEEEEEeCC
Confidence 34455887666 899999988764
No 73
>PHA02278 thioredoxin-like protein
Probab=99.21 E-value=5.2e-11 Score=88.18 Aligned_cols=86 Identities=14% Similarity=0.079 Sum_probs=60.2
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
+++++||+|||+||++|+...|.+.++.+++.. .+.++.|.+|. +.....+.++++
T Consensus 13 ~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~-~~~~~~vdvd~-------~~~d~~~l~~~~---------------- 68 (103)
T PHA02278 13 QKKDVIVMITQDNCGKCEILKSVIPMFQESGDI-KKPILTLNLDA-------EDVDREKAVKLF---------------- 68 (103)
T ss_pred CCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcC-CceEEEEECCc-------cccccHHHHHHC----------------
Confidence 578999999999999999999999999887544 36777887762 100011222322
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchH
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLI 192 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~ 192 (240)
.+..+|+++++ ++|+++.+..|..+.+.|.
T Consensus 69 ------------------~I~~iPT~i~f-k~G~~v~~~~G~~~~~~l~ 98 (103)
T PHA02278 69 ------------------DIMSTPVLIGY-KDGQLVKKYEDQVTPMQLQ 98 (103)
T ss_pred ------------------CCccccEEEEE-ECCEEEEEEeCCCCHHHHH
Confidence 34455776555 7899999988866665543
No 74
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.21 E-value=2.5e-11 Score=103.86 Aligned_cols=94 Identities=13% Similarity=0.241 Sum_probs=76.8
Q ss_pred CCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecC
Q psy299 61 STYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVN 140 (240)
Q Consensus 61 s~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~ 140 (240)
...+.+||||+||++||++|+..+|.|.++..+|+++ +.+.-|++| .++... .++
T Consensus 39 ~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~-f~LakvN~D-------~~p~vA----aqf------------- 93 (304)
T COG3118 39 QSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGK-FKLAKVNCD-------AEPMVA----AQF------------- 93 (304)
T ss_pred HHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCc-eEEEEecCC-------cchhHH----HHh-------------
Confidence 3345679999999999999999999999999999986 889899887 222211 111
Q ss_pred CCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhccc
Q psy299 141 GDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRT 201 (240)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~ 201 (240)
+|+.+|++|++ ++|+-+.-+.|..+.+.+++.|++++..
T Consensus 94 ---------------------giqsIPtV~af-~dGqpVdgF~G~qPesqlr~~ld~~~~~ 132 (304)
T COG3118 94 ---------------------GVQSIPTVYAF-KDGQPVDGFQGAQPESQLRQFLDKVLPA 132 (304)
T ss_pred ---------------------CcCcCCeEEEe-eCCcCccccCCCCcHHHHHHHHHHhcCh
Confidence 46666888887 9999999999988888999999998865
No 75
>PRK10996 thioredoxin 2; Provisional
Probab=99.20 E-value=7.5e-11 Score=91.99 Aligned_cols=89 Identities=17% Similarity=0.133 Sum_probs=68.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
.+++++|.||++||++|+...|.+.++++++.+ ++.++.|.+| .. .++++++
T Consensus 51 ~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~-------~~----~~l~~~~---------------- 102 (139)
T PRK10996 51 DDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTE-------AE----RELSARF---------------- 102 (139)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCC-------CC----HHHHHhc----------------
Confidence 479999999999999999999999999998876 4888888654 11 1223333
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhc
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILG 199 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll 199 (240)
++..+|+++++ ++|+++.++.|..+.+.+.+.|++++
T Consensus 103 ------------------~V~~~Ptlii~-~~G~~v~~~~G~~~~e~l~~~l~~~~ 139 (139)
T PRK10996 103 ------------------RIRSIPTIMIF-KNGQVVDMLNGAVPKAPFDSWLNEAL 139 (139)
T ss_pred ------------------CCCccCEEEEE-ECCEEEEEEcCCCCHHHHHHHHHHhC
Confidence 34445787666 58999999888888888999888764
No 76
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.19 E-value=7.3e-11 Score=86.63 Aligned_cols=83 Identities=17% Similarity=0.287 Sum_probs=61.8
Q ss_pred CCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCC
Q psy299 63 YKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGD 142 (240)
Q Consensus 63 ~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~ 142 (240)
..+++++|.||++||++|+...|.+.++.+++++. +.+..|.+|. . ...+++++
T Consensus 16 ~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~-~~~~~vd~~~-------~----~~~~~~~~-------------- 69 (101)
T cd03003 16 NSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGV-IRIGAVNCGD-------D----RMLCRSQG-------------- 69 (101)
T ss_pred cCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCc-eEEEEEeCCc-------c----HHHHHHcC--------------
Confidence 35689999999999999999999999999999864 8888898761 1 12333333
Q ss_pred CCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchH
Q psy299 143 NAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLI 192 (240)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~ 192 (240)
+...|+++++ ++|+.+.++.|..+.+.|.
T Consensus 70 --------------------v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~ 98 (101)
T cd03003 70 --------------------VNSYPSLYVF-PSGMNPEKYYGDRSKESLV 98 (101)
T ss_pred --------------------CCccCEEEEE-cCCCCcccCCCCCCHHHHH
Confidence 3334787777 7898887777766655443
No 77
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.18 E-value=1.5e-10 Score=84.80 Aligned_cols=85 Identities=21% Similarity=0.232 Sum_probs=60.3
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
+|+ +||.||++||++|+...|.+.++.+.++..++.+..|.+|. .++ .++++
T Consensus 16 ~~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~-------~~~----~~~~~---------------- 67 (101)
T cd02994 16 EGE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ-------EPG----LSGRF---------------- 67 (101)
T ss_pred CCC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC-------CHh----HHHHc----------------
Confidence 566 57999999999999999999999998776678888887651 111 22222
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHH
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIE 196 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~ 196 (240)
.+...|+++++ ++|++ .++.|..+.+.|.+.|+
T Consensus 68 ------------------~i~~~Pt~~~~-~~g~~-~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 68 ------------------FVTALPTIYHA-KDGVF-RRYQGPRDKEDLISFIE 100 (101)
T ss_pred ------------------CCcccCEEEEe-CCCCE-EEecCCCCHHHHHHHHh
Confidence 34445787776 88985 56667666666665554
No 78
>KOG0854|consensus
Probab=99.16 E-value=1.7e-10 Score=91.22 Aligned_cols=155 Identities=15% Similarity=0.273 Sum_probs=106.1
Q ss_pred ccccCCcccCCeEeecCCCCcccCCCCCCc-E-EEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCC
Q psy299 37 DSWKNAETVYDFTVKNIKGEDVPLSTYKGH-V-LVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEP 114 (240)
Q Consensus 37 ~~~~~g~~~p~f~l~d~~G~~v~ls~~~gk-~-vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~ 114 (240)
..+..|+.+|+|......| .+.+.|+.|. | +|...-+...|+|..|+..+..++.++..+|+++|++|+|....+..
T Consensus 4 ~~l~lgd~~PNfea~Tt~g-~i~fhd~~gdSW~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~vesH~~ 82 (224)
T KOG0854|consen 4 PRLRLGDTVPNFEADTTVG-KIKFHDYLGDSWGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVESHKD 82 (224)
T ss_pred CcccccCcCCCcccccccc-ceehhhhcccceEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHHHHH
Confidence 4567899999999988888 5789999875 3 44444578899999999999999999999999999999995433322
Q ss_pred CCHHHHHHHHHhcC--cceeeeEeeecCCCCCchHHHHHhhhcCCcc--cccccccceEEEEcCCCCeEEec-cCCCCc-
Q psy299 115 GDADQICEFTKKKN--VQFDLFEKINVNGDNAHPLWKFLKHKQGGTL--VDAIKWNFTKFIVDKNGVPVERH-AANASP- 188 (240)
Q Consensus 115 ~~~e~~~~~~~~~~--~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~--~~~v~~~P~~~lID~~G~Iv~~~-~~~~~~- 188 (240)
| .+.++.|++..+ ++||++ .|.+... ..++.++........ +..++ ..|+||++.+|+-.+ ++..+.
T Consensus 83 W-i~DIks~~~~~~~~~~yPII--aD~~rel-a~~l~MlD~~e~~~~~~~~T~R---avfvi~pdkKirLs~lYP~ttGR 155 (224)
T KOG0854|consen 83 W-IKDIKSYAKVKNHSVPYPII--ADPNREL-AFLLNMLDPEEKKNIGDGKTVR---AVFVIDPDKKIRLSFLYPSTTGR 155 (224)
T ss_pred H-HHHHHHHHhccCCCCCCCee--cCCchhh-hhhhcccCHhHcCCCCCCceEE---EEEEECCCceEEEEEEcccccCc
Confidence 2 345556666656 888998 4444333 234555544333221 12344 469999999999754 344433
Q ss_pred --cchHHHHHHhc
Q psy299 189 --ASLIPHIEILG 199 (240)
Q Consensus 189 --~~l~~~L~~ll 199 (240)
+++...|+.|.
T Consensus 156 N~dEiLRvidsLq 168 (224)
T KOG0854|consen 156 NFDEILRVIDSLQ 168 (224)
T ss_pred CHHHHHHHHHHHh
Confidence 44555555544
No 79
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.13 E-value=3.2e-10 Score=83.74 Aligned_cols=88 Identities=10% Similarity=0.121 Sum_probs=61.0
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcC--cEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRG--LRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNG 141 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~--v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~ 141 (240)
++++++|.||++||++|+...|.+.++.+++++.+ +.+..+.++. . ...++++
T Consensus 14 ~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~-------~----~~~~~~~-------------- 68 (104)
T cd03000 14 KEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATA-------Y----SSIASEF-------------- 68 (104)
T ss_pred cCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECcc-------C----HhHHhhc--------------
Confidence 46799999999999999999999999999997654 5566665441 0 1111111
Q ss_pred CCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHh
Q psy299 142 DNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198 (240)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~l 198 (240)
++...|+.++++ +| ...++.|..+.+.|.+.+++.
T Consensus 69 --------------------~I~~~Pt~~l~~-~~-~~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 69 --------------------GVRGYPTIKLLK-GD-LAYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred --------------------CCccccEEEEEc-CC-CceeecCCCCHHHHHHHHHhh
Confidence 345568988984 44 345566666767777777653
No 80
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.12 E-value=4.3e-10 Score=87.66 Aligned_cols=92 Identities=12% Similarity=0.046 Sum_probs=67.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
.++++||.|||+||++|+..-|.|.++.+++++. +.|+-|.+|. ..++++.+++.
T Consensus 22 ~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe-----------~~dla~~y~I~------------- 76 (142)
T PLN00410 22 EERLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITE-----------VPDFNTMYELY------------- 76 (142)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCC-----------CHHHHHHcCcc-------------
Confidence 5789999999999999999999999999999865 7778887761 22344444442
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCC-eEEeccC--------CCCccchHHHHHHhccc
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGV-PVERHAA--------NASPASLIPHIEILGRT 201 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~-Iv~~~~~--------~~~~~~l~~~L~~ll~~ 201 (240)
..|+++++-++|+ .+.+..| ..+.++|.+.++.++.+
T Consensus 77 ---------------------~~~t~~~ffk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~ 122 (142)
T PLN00410 77 ---------------------DPCTVMFFFRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRG 122 (142)
T ss_pred ---------------------CCCcEEEEEECCeEEEEEecccccccccccCCHHHHHHHHHHHHHH
Confidence 2255565668888 7777766 34556688888877755
No 81
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.11 E-value=4e-10 Score=82.96 Aligned_cols=84 Identities=12% Similarity=0.126 Sum_probs=61.8
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
.+++++|.||++||++|+...|.+.++.+++++ ++.+..|.+|. . .+.++++
T Consensus 18 ~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~-~~~~~~vd~~~-------~----~~~~~~~---------------- 69 (104)
T cd03004 18 RKEPWLVDFYAPWCGPCQALLPELRKAARALKG-KVKVGSVDCQK-------Y----ESLCQQA---------------- 69 (104)
T ss_pred CCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcC-CcEEEEEECCc-------h----HHHHHHc----------------
Confidence 467999999999999999999999999999865 48888887651 1 1223333
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCC-ccchHH
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANAS-PASLIP 193 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~-~~~l~~ 193 (240)
+++..|+++++...|+.+.++.|... .++|.+
T Consensus 70 ------------------~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~l~~ 102 (104)
T cd03004 70 ------------------NIRAYPTIRLYPGNASKYHSYNGWHRDADSILE 102 (104)
T ss_pred ------------------CCCcccEEEEEcCCCCCceEccCCCCCHHHHHh
Confidence 34445888888777688888877654 555543
No 82
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.11 E-value=4.8e-10 Score=81.79 Aligned_cols=85 Identities=13% Similarity=0.173 Sum_probs=64.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
.++++++.||++||+.|+...|.++++.+++.+ ++.++.|..| .++ ++++++
T Consensus 12 ~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d-------~~~----~l~~~~---------------- 63 (97)
T cd02949 12 SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDID-------EDQ----EIAEAA---------------- 63 (97)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECC-------CCH----HHHHHC----------------
Confidence 578999999999999999999999999999876 4888888655 122 122222
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHH
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHI 195 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L 195 (240)
++..+|+.+++ ++|+++.+..+..+.+++.+.|
T Consensus 64 ------------------~v~~vPt~~i~-~~g~~v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 64 ------------------GIMGTPTVQFF-KDKELVKEISGVKMKSEYREFI 96 (97)
T ss_pred ------------------CCeeccEEEEE-ECCeEEEEEeCCccHHHHHHhh
Confidence 23445888888 4799999888877776666654
No 83
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.11 E-value=2.3e-10 Score=83.64 Aligned_cols=81 Identities=20% Similarity=0.278 Sum_probs=58.7
Q ss_pred EEEEEEecCCCCCcHHHHHHHHHHHHHHhh--cCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCCC
Q psy299 67 VLVIVNVASRCGYTGKHYKELVELDEKFRD--RGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNA 144 (240)
Q Consensus 67 ~vlv~F~atwCp~C~~~~~~L~~l~~~~~~--~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~ 144 (240)
++||.||++||++|+...|.++++++++++ .++.++.|.++. .. ..++++
T Consensus 18 ~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~-------~~----~~~~~~----------------- 69 (102)
T cd03005 18 NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQ-------HR----ELCSEF----------------- 69 (102)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCC-------Ch----hhHhhc-----------------
Confidence 599999999999999999999999999986 357887776551 11 112222
Q ss_pred chHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHH
Q psy299 145 HPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIP 193 (240)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~ 193 (240)
.+...|+++++ ++|+.+.++.|..+.+.|.+
T Consensus 70 -----------------~v~~~Pt~~~~-~~g~~~~~~~G~~~~~~l~~ 100 (102)
T cd03005 70 -----------------QVRGYPTLLLF-KDGEKVDKYKGTRDLDSLKE 100 (102)
T ss_pred -----------------CCCcCCEEEEE-eCCCeeeEeeCCCCHHHHHh
Confidence 34445888888 78888888877666554443
No 84
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.09 E-value=5.4e-10 Score=81.38 Aligned_cols=89 Identities=8% Similarity=0.057 Sum_probs=66.3
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc-CcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR-GLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGD 142 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~-~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~ 142 (240)
++++++|.||++||+.|+...+.++++.+.+++. ++.++.+.+|. .....+++
T Consensus 12 ~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-----------~~~~~~~~--------------- 65 (102)
T TIGR01126 12 SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATA-----------EKDLASRF--------------- 65 (102)
T ss_pred cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccc-----------hHHHHHhC---------------
Confidence 6899999999999999999999999999999875 37777775541 11222222
Q ss_pred CCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHh
Q psy299 143 NAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198 (240)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~l 198 (240)
+++..|+.+++++++. +..+.+..+.++|...|++.
T Consensus 66 -------------------~i~~~P~~~~~~~~~~-~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 66 -------------------GVSGFPTIKFFPKGKK-PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred -------------------CCCcCCEEEEecCCCc-ceeecCCCCHHHHHHHHHhc
Confidence 3455689899988887 66677767777777777654
No 85
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.07 E-value=5.1e-10 Score=82.93 Aligned_cols=43 Identities=14% Similarity=0.245 Sum_probs=38.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
.|+++||.||++||++|+...|.+.++.+.+.+ ++.++.|.+|
T Consensus 17 ~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~ 59 (109)
T cd03002 17 TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCD 59 (109)
T ss_pred CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecC
Confidence 478999999999999999999999999999875 4888888876
No 86
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.07 E-value=1.1e-09 Score=79.34 Aligned_cols=88 Identities=19% Similarity=0.231 Sum_probs=66.3
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCCC
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNA 144 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~ 144 (240)
+++++|.||++||+.|+...+.++++.+++.+ ++.++.|.+|. +. .+++++
T Consensus 14 ~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~vd~~~-------~~----~~~~~~----------------- 64 (101)
T TIGR01068 14 DKPVLVDFWAPWCGPCKMIAPILEELAKEYEG-KVKFVKLNVDE-------NP----DIAAKY----------------- 64 (101)
T ss_pred CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcC-CeEEEEEECCC-------CH----HHHHHc-----------------
Confidence 57999999999999999999999999988875 48888887651 21 122222
Q ss_pred chHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhc
Q psy299 145 HPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILG 199 (240)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll 199 (240)
++...|+.+++ ++|+++....|..+.+.+.+.|++.+
T Consensus 65 -----------------~v~~~P~~~~~-~~g~~~~~~~g~~~~~~l~~~l~~~~ 101 (101)
T TIGR01068 65 -----------------GIRSIPTLLLF-KNGKEVDRSVGALPKAALKQLINKNL 101 (101)
T ss_pred -----------------CCCcCCEEEEE-eCCcEeeeecCCCCHHHHHHHHHhhC
Confidence 34445888888 78888888777777777888887653
No 87
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.07 E-value=5.3e-10 Score=83.38 Aligned_cols=45 Identities=18% Similarity=0.321 Sum_probs=40.9
Q ss_pred CCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 63 YKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 63 ~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
-+|++++|.||++||++|+...|.+.++.+.++++++.+..|.+|
T Consensus 19 ~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d 63 (109)
T cd02993 19 RRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNAD 63 (109)
T ss_pred hcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECC
Confidence 357999999999999999999999999999999767889888766
No 88
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.07 E-value=6.4e-10 Score=83.71 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=39.0
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
.++++||.|||+||++|+...|.+.++.+++++. +.++.|.+|
T Consensus 28 ~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d 70 (113)
T cd03006 28 DAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCW 70 (113)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECC
Confidence 5689999999999999999999999999999864 888888776
No 89
>KOG0907|consensus
Probab=99.06 E-value=7e-10 Score=82.47 Aligned_cols=85 Identities=24% Similarity=0.256 Sum_probs=64.6
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
.+|.++|+|+|+||++|+..-|.+.++..+|.+ +.++.|.+| . +...++++++
T Consensus 20 ~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvd--------e---~~~~~~~~~V-------------- 72 (106)
T KOG0907|consen 20 GDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVD--------E---LEEVAKEFNV-------------- 72 (106)
T ss_pred CCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEecc--------c---CHhHHHhcCc--------------
Confidence 369999999999999999999999999999997 899999876 1 5555554443
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHH
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEI 197 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ 197 (240)
..+|++.++ ++|+.+....|.... ++++.+.+
T Consensus 73 --------------------~~~PTf~f~-k~g~~~~~~vGa~~~-~l~~~i~~ 104 (106)
T KOG0907|consen 73 --------------------KAMPTFVFY-KGGEEVDEVVGANKA-ELEKKIAK 104 (106)
T ss_pred --------------------eEeeEEEEE-ECCEEEEEEecCCHH-HHHHHHHh
Confidence 334776777 889888887765443 55555443
No 90
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.04 E-value=3.9e-10 Score=85.42 Aligned_cols=46 Identities=13% Similarity=0.133 Sum_probs=36.2
Q ss_pred CCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 61 STYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 61 s~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
+...||++||+||++||++|+...|.+.+....... +..++.|.+|
T Consensus 15 A~~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~-~~~fv~v~vd 60 (117)
T cd02959 15 AKDSGKPLMLLIHKTWCGACKALKPKFAESKEISEL-SHNFVMVNLE 60 (117)
T ss_pred HHHcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhh-cCcEEEEEec
Confidence 345689999999999999999999999997776543 3456666655
No 91
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=2.1e-09 Score=83.23 Aligned_cols=129 Identities=14% Similarity=0.133 Sum_probs=93.4
Q ss_pred cccccCCcccCCeEeecCCCCcccCCCCCCcEEEEEEe-cCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCC
Q psy299 36 DDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEP 114 (240)
Q Consensus 36 ~~~~~~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~-atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~ 114 (240)
....++|+++|+|++.+.+.+.+++.++.||..+|..+ .-..|.|..+.+.+++...++.+ +.|+.||.|
T Consensus 15 g~~~~vGd~ap~ftl~~~dL~~v~l~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~--~~Vl~IS~D------- 85 (158)
T COG2077 15 GNEPQVGDKAPDFTLVGKDLNDVSLADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGN--TVVLCISMD------- 85 (158)
T ss_pred CCCCccCCcCCceEEEcCcccceeccccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCC--cEEEEEeCC-------
Confidence 34568999999999999999999999999997777666 56889999999999999988874 889999987
Q ss_pred CCHHHHHHHHHhcCcce-eeeEeeecCCCCCchHHHHHhhh--cCCcccccccccceEEEEcCCCCeEEec
Q psy299 115 GDADQICEFTKKKNVQF-DLFEKINVNGDNAHPLWKFLKHK--QGGTLVDAIKWNFTKFIVDKNGVPVERH 182 (240)
Q Consensus 115 ~~~e~~~~~~~~~~~~f-p~~~~~d~~~~~~~~l~~~~~~~--~~~~~~~~v~~~P~~~lID~~G~Iv~~~ 182 (240)
-+...++|+...|+.- -.++ |..... +.+.++.. .++..+---| ..|++|.+|+|++.-
T Consensus 86 -LPFAq~RfC~aeGi~nv~~lS--d~r~~~---Fge~yGv~I~egpL~gLlAR---aV~V~De~g~V~y~e 147 (158)
T COG2077 86 -LPFAQKRFCGAEGIENVITLS--DFRDRA---FGENYGVLINEGPLAGLLAR---AVFVLDENGKVTYSE 147 (158)
T ss_pred -ChhHHhhhhhhcCcccceEhh--hhhhhh---hhHhhCEEeccccccCeeee---EEEEEcCCCcEEEEE
Confidence 7999999999999974 3332 111111 11111111 1100111122 459999999999864
No 92
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.02 E-value=2.1e-09 Score=78.27 Aligned_cols=87 Identities=25% Similarity=0.320 Sum_probs=69.0
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
.++++||.||++||++|+...|.+.++.+++++ ++.++.|.++ .. +.++++++
T Consensus 16 ~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~-------~~----~~l~~~~~--------------- 68 (103)
T PF00085_consen 16 SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCD-------EN----KELCKKYG--------------- 68 (103)
T ss_dssp TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETT-------TS----HHHHHHTT---------------
T ss_pred cCCCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhh-------cc----chhhhccC---------------
Confidence 469999999999999999999999999999998 7999998765 11 33444444
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHH
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEI 197 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ 197 (240)
+...|+.+++ .+|+...++.+..+.+.|.+.|++
T Consensus 69 -------------------v~~~Pt~~~~-~~g~~~~~~~g~~~~~~l~~~i~~ 102 (103)
T PF00085_consen 69 -------------------VKSVPTIIFF-KNGKEVKRYNGPRNAESLIEFIEK 102 (103)
T ss_dssp -------------------CSSSSEEEEE-ETTEEEEEEESSSSHHHHHHHHHH
T ss_pred -------------------CCCCCEEEEE-ECCcEEEEEECCCCHHHHHHHHHc
Confidence 3344776666 778878888888888889988875
No 93
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=98.99 E-value=2.5e-09 Score=84.63 Aligned_cols=82 Identities=15% Similarity=0.062 Sum_probs=61.7
Q ss_pred CCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCC
Q psy299 63 YKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGD 142 (240)
Q Consensus 63 ~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~ 142 (240)
.+++++||.||++||++|+...|.++++.+++++.++.++.|.+|. .+ +.++++++....
T Consensus 45 ~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~-------~~----~la~~~~V~~~~--------- 104 (152)
T cd02962 45 DKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR-------FP----NVAEKFRVSTSP--------- 104 (152)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC-------CH----HHHHHcCceecC---------
Confidence 3568999999999999999999999999999987679999998772 22 344555543210
Q ss_pred CCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccC
Q psy299 143 NAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAA 184 (240)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~ 184 (240)
.++..|+++++ ++|+.+.+..+
T Consensus 105 -------------------~v~~~PT~ilf-~~Gk~v~r~~G 126 (152)
T cd02962 105 -------------------LSKQLPTIILF-QGGKEVARRPY 126 (152)
T ss_pred -------------------CcCCCCEEEEE-ECCEEEEEEec
Confidence 23445877666 68999988765
No 94
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=98.96 E-value=1.9e-09 Score=78.95 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=36.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc-CcEEEEeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR-GLRILAFPCN 107 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~-~v~vi~Vs~D 107 (240)
++++++|.||++||++|+...|.++++.+.+++. .+.++.+.++
T Consensus 16 ~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 60 (104)
T cd02997 16 KEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCT 60 (104)
T ss_pred hCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECC
Confidence 4679999999999999999999999999999853 4666666544
No 95
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=98.96 E-value=3.5e-09 Score=88.90 Aligned_cols=90 Identities=14% Similarity=0.097 Sum_probs=66.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
.+++++|.||++||++|+...|.+.++.+++++. +.+..|.++ .. .+.++++
T Consensus 51 ~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~-v~~~~VD~~-------~~----~~l~~~~---------------- 102 (224)
T PTZ00443 51 TTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQ-VNVADLDAT-------RA----LNLAKRF---------------- 102 (224)
T ss_pred CCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCC-eEEEEecCc-------cc----HHHHHHc----------------
Confidence 4689999999999999999999999999999864 666666543 11 1223333
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhcc
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGR 200 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~ 200 (240)
++...|++++++ +|+++....+..+.++|.+.+.+.++
T Consensus 103 ------------------~I~~~PTl~~f~-~G~~v~~~~G~~s~e~L~~fi~~~~~ 140 (224)
T PTZ00443 103 ------------------AIKGYPTLLLFD-KGKMYQYEGGDRSTEKLAAFALGDFK 140 (224)
T ss_pred ------------------CCCcCCEEEEEE-CCEEEEeeCCCCCHHHHHHHHHHHHH
Confidence 344558888887 78888777776777778888777664
No 96
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=98.96 E-value=4e-09 Score=78.31 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=37.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc-----CcEEEEeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR-----GLRILAFPCN 107 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~-----~v~vi~Vs~D 107 (240)
.++++||.||++||++|+...|.++++.+.+++. ++.+..|.+|
T Consensus 17 ~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d 65 (108)
T cd02996 17 SAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD 65 (108)
T ss_pred cCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC
Confidence 3689999999999999999999999999887542 3777778766
No 97
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=98.94 E-value=5.3e-09 Score=75.77 Aligned_cols=41 Identities=15% Similarity=0.076 Sum_probs=35.4
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeec
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~ 106 (240)
+++++|.||++||+.|+...+.|.++.+++ ..++.++.+..
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~ 54 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEA 54 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcc
Confidence 799999999999999999999999999997 33577777743
No 98
>KOG0852|consensus
Probab=98.94 E-value=7.3e-09 Score=82.02 Aligned_cols=129 Identities=16% Similarity=0.221 Sum_probs=90.3
Q ss_pred CCcccCCeEe---ecCCCCcccCCCCCCcEEEEEEecC-CCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCC
Q psy299 41 NAETVYDFTV---KNIKGEDVPLSTYKGHVLVIVNVAS-RCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGD 116 (240)
Q Consensus 41 ~g~~~p~f~l---~d~~G~~v~ls~~~gk~vlv~F~at-wCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~ 116 (240)
+..++|+|.- .|-.-+.++|++++||++++.|+.- +.-+|+.++-.+...++++++.|.+|+++|+| +
T Consensus 6 ~~~p~p~fk~~aVVdG~f~e~~L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~D--------S 77 (196)
T KOG0852|consen 6 VFKPAPDFKGTAVVDGEFKEIKLSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTD--------S 77 (196)
T ss_pred cCCCCCCcceeEEEcCcceEEeehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEecc--------c
Confidence 4455578773 3455578999999999999999844 55589999999999999999999999999998 5
Q ss_pred HHHHHHHHH----hcCc---ceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCC
Q psy299 117 ADQICEFTK----KKNV---QFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANAS 187 (240)
Q Consensus 117 ~e~~~~~~~----~~~~---~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~ 187 (240)
.....+++. +-|+ ++|++ .|.+... ..-|+.+....+ -..+ ..|+||++|.++........
T Consensus 78 ~fshlAW~ntprk~gGlg~~~iPll--sD~~~~I-srdyGvL~~~~G----~~lR---glfIId~~gi~R~it~NDlp 145 (196)
T KOG0852|consen 78 VFSHLAWINTPRKQGGLGPLNIPLL--SDLNHEI-SRDYGVLKEDEG----IALR---GLFIIDPDGILRQITINDLP 145 (196)
T ss_pred hhhhhhHhcCchhhCCcCcccccee--eccchhh-HHhcCceecCCC----ccee---eeEEEccccceEEeeecccC
Confidence 555555553 3333 57998 3333332 223333333332 2444 34999999999986644443
No 99
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.93 E-value=4.1e-09 Score=99.96 Aligned_cols=96 Identities=16% Similarity=0.150 Sum_probs=68.9
Q ss_pred CCCCCcEEEEEEecCCCCCcHHHHHHH---HHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEee
Q psy299 61 STYKGHVLVIVNVASRCGYTGKHYKEL---VELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKI 137 (240)
Q Consensus 61 s~~~gk~vlv~F~atwCp~C~~~~~~L---~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~ 137 (240)
+..+||+++|+||++||++|+..-+.+ .+++++++ ++.++.+.++. +.++.++++++++
T Consensus 470 a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~-------~~~~~~~l~~~~~--------- 531 (571)
T PRK00293 470 AKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTA-------NNAEDVALLKHYN--------- 531 (571)
T ss_pred HHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCC-------CChhhHHHHHHcC---------
Confidence 335689999999999999999876654 56666664 47777776551 2223344444433
Q ss_pred ecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeE--EeccCCCCccchHHHHHHhc
Q psy299 138 NVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPV--ERHAANASPASLIPHIEILG 199 (240)
Q Consensus 138 d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv--~~~~~~~~~~~l~~~L~~ll 199 (240)
+...|+++++|++|+++ .+..+..+.+++.+.|+++.
T Consensus 532 -------------------------v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~~~ 570 (571)
T PRK00293 532 -------------------------VLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQLQ 570 (571)
T ss_pred -------------------------CCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHHhc
Confidence 34458999999999985 57778788888888888754
No 100
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=98.92 E-value=4.3e-09 Score=76.99 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=61.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhh-cCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRD-RGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGD 142 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~-~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~ 142 (240)
.+++++|.||++||++|+...|.+.++.+.++. .++.++.+.++. . ...+++++
T Consensus 17 ~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~-------~---~~~~~~~~--------------- 71 (105)
T cd02998 17 DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE-------A---NKDLAKKY--------------- 71 (105)
T ss_pred CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC-------c---chhhHHhC---------------
Confidence 357999999999999999999999999999984 357888886551 0 11222222
Q ss_pred CCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHH
Q psy299 143 NAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIP 193 (240)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~ 193 (240)
.+...|+++++++.|+....+.+..+.++|.+
T Consensus 72 -------------------~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~ 103 (105)
T cd02998 72 -------------------GVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVK 103 (105)
T ss_pred -------------------CCCCcCEEEEEeCCCCCccccCCccCHHHHHh
Confidence 34445898999888776767766655555543
No 101
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.91 E-value=8.6e-09 Score=78.31 Aligned_cols=88 Identities=13% Similarity=0.161 Sum_probs=66.1
Q ss_pred CcEEEEEEecCCCCC--cH--HHHHHHHHHHHHHh-hcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeec
Q psy299 65 GHVLVIVNVASRCGY--TG--KHYKELVELDEKFR-DRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINV 139 (240)
Q Consensus 65 gk~vlv~F~atwCp~--C~--~~~~~L~~l~~~~~-~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~ 139 (240)
..++|++||++||++ |+ +..|.|.++..++- ..++.++-|.+|. . .+.+++++
T Consensus 27 ~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~-------~----~~La~~~~----------- 84 (120)
T cd03065 27 DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK-------D----AKVAKKLG----------- 84 (120)
T ss_pred CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC-------C----HHHHHHcC-----------
Confidence 459999999999987 99 67788888888872 3369999998761 2 23344444
Q ss_pred CCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhc
Q psy299 140 NGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILG 199 (240)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll 199 (240)
++.+|+.+++ ++|+++. +.|..+.+.|.+.|++++
T Consensus 85 -----------------------I~~iPTl~lf-k~G~~v~-~~G~~~~~~l~~~l~~~~ 119 (120)
T cd03065 85 -----------------------LDEEDSIYVF-KDDEVIE-YDGEFAADTLVEFLLDLI 119 (120)
T ss_pred -----------------------CccccEEEEE-ECCEEEE-eeCCCCHHHHHHHHHHHh
Confidence 4445776666 7999887 888888888999998876
No 102
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.90 E-value=1.5e-08 Score=77.40 Aligned_cols=85 Identities=7% Similarity=-0.045 Sum_probs=52.3
Q ss_pred CCCcEEEEEEecCCCCCcHHHHHHH---HHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeec
Q psy299 63 YKGHVLVIVNVASRCGYTGKHYKEL---VELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINV 139 (240)
Q Consensus 63 ~~gk~vlv~F~atwCp~C~~~~~~L---~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~ 139 (240)
-.||++||+|+++||+.|+..-+.. .++.+.+.+ ++.+|-|..+ ..++..+.+.+.....
T Consensus 13 ~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~-~fv~VkvD~~-------~~~~~~~~~~~~~~~~--------- 75 (124)
T cd02955 13 REDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNE-NFVPIKVDRE-------ERPDVDKIYMNAAQAM--------- 75 (124)
T ss_pred HcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhC-CEEEEEEeCC-------cCcHHHHHHHHHHHHh---------
Confidence 4689999999999999999876532 344444433 4666666443 1222222221111100
Q ss_pred CCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCC
Q psy299 140 NGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAAN 185 (240)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~ 185 (240)
.++.+.|+++++|++|++++...+.
T Consensus 76 ---------------------~~~~G~Pt~vfl~~~G~~~~~~~~~ 100 (124)
T cd02955 76 ---------------------TGQGGWPLNVFLTPDLKPFFGGTYF 100 (124)
T ss_pred ---------------------cCCCCCCEEEEECCCCCEEeeeeec
Confidence 0344569999999999999877544
No 103
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=98.88 E-value=7.4e-09 Score=74.52 Aligned_cols=84 Identities=12% Similarity=0.150 Sum_probs=61.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHh-hcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFR-DRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGD 142 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~-~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~ 142 (240)
++++++|.||++||+.|+...+.+.++.+.+. ..++.++.|.++ . ...+.+++
T Consensus 14 ~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~--------~---~~~~~~~~--------------- 67 (101)
T cd02961 14 DSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT--------A---NNDLCSEY--------------- 67 (101)
T ss_pred CCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc--------c---hHHHHHhC---------------
Confidence 45699999999999999999999999999985 336888888755 1 12222322
Q ss_pred CCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchH
Q psy299 143 NAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLI 192 (240)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~ 192 (240)
+++.+|+.++++++|+.+.++.+..+.+++.
T Consensus 68 -------------------~i~~~Pt~~~~~~~~~~~~~~~g~~~~~~i~ 98 (101)
T cd02961 68 -------------------GVRGYPTIKLFPNGSKEPVKYEGPRTLESLV 98 (101)
T ss_pred -------------------CCCCCCEEEEEcCCCcccccCCCCcCHHHHH
Confidence 3444589999998877777776665555444
No 104
>PTZ00051 thioredoxin; Provisional
Probab=98.86 E-value=1.2e-08 Score=74.06 Aligned_cols=42 Identities=10% Similarity=0.199 Sum_probs=35.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
.+++++|.||++||++|+...+.+.++.+++. ++.++.|..+
T Consensus 17 ~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~ 58 (98)
T PTZ00051 17 QNELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVD 58 (98)
T ss_pred cCCeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECc
Confidence 46899999999999999999999999999765 4777777644
No 105
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=98.83 E-value=2.5e-08 Score=72.85 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=36.7
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
+++++|.||++||++|+...|.+.++.+++... +.++.+.+|
T Consensus 18 ~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~-~~~~~id~~ 59 (103)
T cd03001 18 DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGI-VKVGAVDAD 59 (103)
T ss_pred CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCC-ceEEEEECc
Confidence 567999999999999999999999999998764 888888654
No 106
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=98.82 E-value=3.8e-08 Score=74.01 Aligned_cols=90 Identities=21% Similarity=0.195 Sum_probs=61.7
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCCC
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNA 144 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~ 144 (240)
++.++|+||++||++|+...|.|.++.+.+ + .+.++.|..| ..+ +.++++
T Consensus 22 ~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~-~i~~~~vd~d-------~~~----~l~~~~----------------- 71 (113)
T cd02975 22 PVDLVVFSSKEGCQYCEVTKQLLEELSELS-D-KLKLEIYDFD-------EDK----EKAEKY----------------- 71 (113)
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHhc-C-ceEEEEEeCC-------cCH----HHHHHc-----------------
Confidence 467889999999999999999999999886 3 4788888765 112 222322
Q ss_pred chHHHHHhhhcCCcccccccccceEEEEcCCCCeE-EeccCCCCccchHHHHHHhccc
Q psy299 145 HPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPV-ERHAANASPASLIPHIEILGRT 201 (240)
Q Consensus 145 ~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv-~~~~~~~~~~~l~~~L~~ll~~ 201 (240)
++..+|++++++..|+.- .++.|.....++.+.|..+++.
T Consensus 72 -----------------~v~~vPt~~i~~~g~~~~~~~~~G~~~~~el~~~i~~i~~~ 112 (113)
T cd02975 72 -----------------GVERVPTTIFLQDGGKDGGIRYYGLPAGYEFASLIEDIVRV 112 (113)
T ss_pred -----------------CCCcCCEEEEEeCCeecceEEEEecCchHHHHHHHHHHHhc
Confidence 344458878876533221 1455666667788888888754
No 107
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=98.80 E-value=3e-08 Score=74.35 Aligned_cols=41 Identities=15% Similarity=0.124 Sum_probs=35.9
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
+++++|.||++||++|+...|.++++.+++. ++.++-|..+
T Consensus 24 ~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~ 64 (113)
T cd02957 24 GTRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAE 64 (113)
T ss_pred CCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEch
Confidence 5899999999999999999999999999986 4777777543
No 108
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=98.80 E-value=2.9e-08 Score=74.15 Aligned_cols=81 Identities=15% Similarity=0.064 Sum_probs=61.3
Q ss_pred CCcEEEEEEecCC--CCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCC
Q psy299 64 KGHVLVIVNVASR--CGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNG 141 (240)
Q Consensus 64 ~gk~vlv~F~atw--Cp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~ 141 (240)
.|.+++|.||++| ||.|....|.|.++.++|+++ +.++-|.+| +.+ +.+.+++
T Consensus 26 ~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid-------~~~----~la~~f~------------- 80 (111)
T cd02965 26 AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRA-------DEQ----ALAARFG------------- 80 (111)
T ss_pred CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECC-------CCH----HHHHHcC-------------
Confidence 5789999999997 999999999999999999875 788888766 222 3333333
Q ss_pred CCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccch
Q psy299 142 DNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASL 191 (240)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l 191 (240)
|+.+|+++++ ++|+++.+..|..+.+++
T Consensus 81 ---------------------V~sIPTli~f-kdGk~v~~~~G~~~~~e~ 108 (111)
T cd02965 81 ---------------------VLRTPALLFF-RDGRYVGVLAGIRDWDEY 108 (111)
T ss_pred ---------------------CCcCCEEEEE-ECCEEEEEEeCccCHHHH
Confidence 4445776555 789999988876665544
No 109
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=98.80 E-value=4.6e-08 Score=68.53 Aligned_cols=39 Identities=10% Similarity=0.187 Sum_probs=33.3
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 68 LVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 68 vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
.+..||++||++|+...|.|.++.++++.. +.++-|..+
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~-~~~~~vd~~ 40 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDA-VEVEYINVM 40 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCc-eEEEEEeCc
Confidence 477899999999999999999999998754 777777654
No 110
>PTZ00102 disulphide isomerase; Provisional
Probab=98.79 E-value=1.6e-08 Score=93.71 Aligned_cols=107 Identities=12% Similarity=0.051 Sum_probs=75.9
Q ss_pred eecCCCCcccCC-CCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc-CcEEEEeecCCCCCCCCCCHHHHHHHHHhc
Q psy299 50 VKNIKGEDVPLS-TYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR-GLRILAFPCNQFGGQEPGDADQICEFTKKK 127 (240)
Q Consensus 50 l~d~~G~~v~ls-~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~-~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~ 127 (240)
++...|..+.-. .-.|+++||.||++||++|+...|.++++.+.+++. .+.+..+.++. +.
T Consensus 359 v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~-------~~---------- 421 (477)
T PTZ00102 359 VKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTA-------NE---------- 421 (477)
T ss_pred eEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCC-------Cc----------
Confidence 344445543321 235899999999999999999999999999998874 36666665441 00
Q ss_pred CcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhccc
Q psy299 128 NVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRT 201 (240)
Q Consensus 128 ~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~ 201 (240)
.. . . ...+++.|+.+++++++++..++.|..+.+.+.+.|++....
T Consensus 422 -----~~---------~----~----------~~~v~~~Pt~~~~~~~~~~~~~~~G~~~~~~l~~~i~~~~~~ 467 (477)
T PTZ00102 422 -----TP---------L----E----------EFSWSAFPTILFVKAGERTPIPYEGERTVEGFKEFVNKHATN 467 (477)
T ss_pred -----cc---------h----h----------cCCCcccCeEEEEECCCcceeEecCcCCHHHHHHHHHHcCCC
Confidence 00 0 0 004556699999998888766788888888899999887754
No 111
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=98.77 E-value=2.1e-08 Score=75.99 Aligned_cols=44 Identities=14% Similarity=0.049 Sum_probs=39.4
Q ss_pred CCCcEEEEEEec-------CCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 63 YKGHVLVIVNVA-------SRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 63 ~~gk~vlv~F~a-------twCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
.+|++++|.||| +|||+|+...|.|+++.+++++ ++.++-|.+|
T Consensus 19 ~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~-~v~fv~Vdvd 69 (119)
T cd02952 19 HEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPE-DCVFIYCDVG 69 (119)
T ss_pred cCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCC-CCEEEEEEcC
Confidence 468999999999 9999999999999999999885 4888888776
No 112
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=98.74 E-value=4.4e-08 Score=71.53 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=37.6
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc-CcEEEEeecC
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRDR-GLRILAFPCN 107 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~-~v~vi~Vs~D 107 (240)
+++++|.||++||++|+...|.+.++.+.+++. ++.+..|.++
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 589999999999999999999999999999873 5777777654
No 113
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=98.73 E-value=2.3e-08 Score=74.79 Aligned_cols=54 Identities=11% Similarity=0.047 Sum_probs=44.3
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCc
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNV 129 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~ 129 (240)
.+|++||.|+++|||+|+..-|.|.++.+++++. +.++-|.+| +..++++.+++
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVD-----------ev~dva~~y~I 66 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVD-----------KVPVYTQYFDI 66 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEecc-----------ccHHHHHhcCc
Confidence 6899999999999999999999999999999754 778888655 34455565555
No 114
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=98.72 E-value=3.9e-08 Score=82.21 Aligned_cols=140 Identities=16% Similarity=0.201 Sum_probs=96.6
Q ss_pred ccccCCcccCCeEeecCCCCc-ccCCCCC--CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCC
Q psy299 37 DSWKNAETVYDFTVKNIKGED-VPLSTYK--GHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQE 113 (240)
Q Consensus 37 ~~~~~g~~~p~f~l~d~~G~~-v~ls~~~--gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~ 113 (240)
.....|..+|+..+...+|+. .++-||. ++|+||+|..-.||+=...++.++++.++|.+. ++++.|.+. +.++
T Consensus 71 ~~a~~G~~APns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~--EAHp 147 (237)
T PF00837_consen 71 KEAKLGGPAPNSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIE--EAHP 147 (237)
T ss_pred cceeCCCCCCCCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHh--hhCc
Confidence 456789999999999999999 8999984 689999999888999999999999999999986 444443332 1122
Q ss_pred C------------------CCHHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccc-eEEEEcC
Q psy299 114 P------------------GDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNF-TKFIVDK 174 (240)
Q Consensus 114 ~------------------~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P-~~~lID~ 174 (240)
. .++-...+.+.++...+|++ +|.-...+...|+ +. | +.||| .
T Consensus 148 sDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~pi~--vD~mdN~~~~~Yg------------A~---PeRlyIi-~ 209 (237)
T PF00837_consen 148 SDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCPIV--VDTMDNNFNKAYG------------AL---PERLYII-Q 209 (237)
T ss_pred CCCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCCEE--EEccCCHHHHHhC------------CC---cceEEEE-E
Confidence 2 12223444555566778988 4444333333332 11 3 35777 5
Q ss_pred CCCeEEeccCCC---CccchHHHHHH
Q psy299 175 NGVPVERHAANA---SPASLIPHIEI 197 (240)
Q Consensus 175 ~G~Iv~~~~~~~---~~~~l~~~L~~ 197 (240)
+|+|++..+... .++++++.|++
T Consensus 210 ~gkv~Y~Gg~GP~~y~~~e~r~~L~~ 235 (237)
T PF00837_consen 210 DGKVVYKGGPGPFGYSPEELREWLEK 235 (237)
T ss_pred CCEEEEeCCCCCCcCCHHHHHHHHHh
Confidence 999998775433 45667777765
No 115
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=98.72 E-value=9.6e-08 Score=67.23 Aligned_cols=40 Identities=20% Similarity=0.199 Sum_probs=35.7
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 66 HVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 66 k~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++++|.||++||+.|....+.++++.++ ..++.++.+.++
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~ 50 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVD 50 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECC
Confidence 8899999999999999999999999888 346888888765
No 116
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=98.72 E-value=1.6e-07 Score=70.66 Aligned_cols=42 Identities=12% Similarity=-0.040 Sum_probs=36.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
.+++++|.||++||++|+...|.|.++.+++. ++.++-|..|
T Consensus 21 ~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~ 62 (113)
T cd02989 21 SSERVVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAE 62 (113)
T ss_pred CCCcEEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcc
Confidence 35799999999999999999999999999886 4788888655
No 117
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=98.69 E-value=1.5e-07 Score=70.88 Aligned_cols=43 Identities=21% Similarity=0.292 Sum_probs=36.0
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc--CcEEEEeecC
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRDR--GLRILAFPCN 107 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~--~v~vi~Vs~D 107 (240)
+++++|.||++||++|+...|.++++.+++++. .+.+..|.++
T Consensus 19 ~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 19 PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 479999999999999999999999999998753 3666666543
No 118
>KOG0908|consensus
Probab=98.62 E-value=1.8e-07 Score=78.22 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=71.7
Q ss_pred CCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeec
Q psy299 60 LSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINV 139 (240)
Q Consensus 60 ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~ 139 (240)
|+.-.+|.++|+|.|+||++|+...|.+..+..+|. +.+++-|.+ ++.+..+..+|
T Consensus 16 ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp--~aVFlkVdV-----------d~c~~taa~~g----------- 71 (288)
T KOG0908|consen 16 LSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYP--GAVFLKVDV-----------DECRGTAATNG----------- 71 (288)
T ss_pred hhccCceEEEEEEEecccchHHhhhhHHHHhhhhCc--ccEEEEEeH-----------HHhhchhhhcC-----------
Confidence 444457999999999999999999999999999996 578888844 44444444444
Q ss_pred CCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcc
Q psy299 140 NGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWN 207 (240)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~ 207 (240)
|..+|+++++ .+|+-+.+..| .++..|++.+++....+ ..|+
T Consensus 72 -----------------------V~amPTFiff-~ng~kid~~qG-Ad~~gLe~kv~~~~sts-aa~~ 113 (288)
T KOG0908|consen 72 -----------------------VNAMPTFIFF-RNGVKIDQIQG-ADASGLEEKVAKYASTS-AASS 113 (288)
T ss_pred -----------------------cccCceEEEE-ecCeEeeeecC-CCHHHHHHHHHHHhccC-cccc
Confidence 4444675444 78876666544 56667999999988765 4454
No 119
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=98.61 E-value=1.9e-07 Score=86.00 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=41.3
Q ss_pred CCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 63 YKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 63 ~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
.+++++||.||++||++|+...|.+.++.+++++.++.|+.|.+|
T Consensus 369 ~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD 413 (463)
T TIGR00424 369 ERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRAD 413 (463)
T ss_pred cCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECC
Confidence 468899999999999999999999999999998877889889876
No 120
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.60 E-value=5.2e-07 Score=67.68 Aligned_cols=95 Identities=12% Similarity=0.105 Sum_probs=65.4
Q ss_pred CCCCcEEEEEEecCCCCCcHHHHHHH---HHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeee
Q psy299 62 TYKGHVLVIVNVASRCGYTGKHYKEL---VELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKIN 138 (240)
Q Consensus 62 ~~~gk~vlv~F~atwCp~C~~~~~~L---~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d 138 (240)
.-++|+++|+|.+.||+.|......+ .++.+.+.+ ++.++.+..+ ++ +..+++..++
T Consensus 14 k~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~-~~v~~~~d~~--------~~-e~~~~~~~~~---------- 73 (114)
T cd02958 14 KSEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRE-NFIFWQCDID--------SS-EGQRFLQSYK---------- 73 (114)
T ss_pred HhhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHh-CEEEEEecCC--------Cc-cHHHHHHHhC----------
Confidence 34689999999999999999865432 334444443 3555555432 11 1233333332
Q ss_pred cCCCCCchHHHHHhhhcCCcccccccccceEEEEcC-CCCeEEeccCCCCccchHHHHHHhcc
Q psy299 139 VNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDK-NGVPVERHAANASPASLIPHIEILGR 200 (240)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~-~G~Iv~~~~~~~~~~~l~~~L~~ll~ 200 (240)
+...|+.++||+ +|+++.+..|..+++++...|++.+.
T Consensus 74 ------------------------~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 74 ------------------------VDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIEFLE 112 (114)
T ss_pred ------------------------ccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHHHHh
Confidence 334488899999 89999999999999999999988764
No 121
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=98.60 E-value=2.8e-07 Score=67.39 Aligned_cols=42 Identities=14% Similarity=0.278 Sum_probs=38.0
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
|+++++.|+++||++|....+.+.++.++++++ +.++.|..|
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~ 53 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDAD 53 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchH
Confidence 799999999999999999999999999999975 888888543
No 122
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.59 E-value=2.3e-07 Score=75.11 Aligned_cols=41 Identities=7% Similarity=0.075 Sum_probs=36.5
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++++||.||++||++|+...|.|.++.+++. ++.++-|..+
T Consensus 83 ~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d 123 (175)
T cd02987 83 DTTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRAS 123 (175)
T ss_pred CcEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEecc
Confidence 4699999999999999999999999999986 4888888754
No 123
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.58 E-value=2.6e-07 Score=84.86 Aligned_cols=93 Identities=12% Similarity=0.208 Sum_probs=67.8
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcC--cEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRG--LRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNG 141 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~--v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~ 141 (240)
++++++|.||++||++|+...|.+.++.+.+.+.+ +.++.|.++. . .+.+++++
T Consensus 17 ~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~-------~----~~l~~~~~------------- 72 (462)
T TIGR01130 17 SHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATE-------E----KDLAQKYG------------- 72 (462)
T ss_pred cCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCC-------c----HHHHHhCC-------------
Confidence 46899999999999999999999999999988765 7888887651 1 22333333
Q ss_pred CCCchHHHHHhhhcCCcccccccccceEEEEcCCCCe-EEeccCCCCccchHHHHHHhcccC
Q psy299 142 DNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVP-VERHAANASPASLIPHIEILGRTS 202 (240)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~I-v~~~~~~~~~~~l~~~L~~ll~~~ 202 (240)
++..|+.+++ ++|+. +..+.|..+.+.|.+.+++.+...
T Consensus 73 ---------------------i~~~Pt~~~~-~~g~~~~~~~~g~~~~~~l~~~i~~~~~~~ 112 (462)
T TIGR01130 73 ---------------------VSGYPTLKIF-RNGEDSVSDYNGPRDADGIVKYMKKQSGPA 112 (462)
T ss_pred ---------------------CccccEEEEE-eCCccceeEecCCCCHHHHHHHHHHhcCCC
Confidence 3334766666 56766 666777777777888888877533
No 124
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.53 E-value=4.1e-07 Score=76.04 Aligned_cols=100 Identities=16% Similarity=0.110 Sum_probs=70.7
Q ss_pred ccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEee
Q psy299 58 VPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKI 137 (240)
Q Consensus 58 v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~ 137 (240)
-.++++.+++-|++|+.+.|++|+...|.|+.+.++| |+.|+.||+|.. .. -.||...
T Consensus 113 ~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~--~~---------------~~fp~~~-- 170 (215)
T PF13728_consen 113 KALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY---GFSVIPVSLDGR--PI---------------PSFPNPR-- 170 (215)
T ss_pred HHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh---CCEEEEEecCCC--CC---------------cCCCCCC--
Confidence 3456677899999999999999999999999999988 599999999821 10 0233220
Q ss_pred ecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCC-CeEEeccCCCCccchHHH
Q psy299 138 NVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNG-VPVERHAANASPASLIPH 194 (240)
Q Consensus 138 d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G-~Iv~~~~~~~~~~~l~~~ 194 (240)
....+.+.+ ++..+|+.||+++++ ++.-...|..+.++|.+.
T Consensus 171 -----~~~g~~~~l----------~v~~~Pal~Lv~~~~~~~~pv~~G~~s~~~L~~r 213 (215)
T PF13728_consen 171 -----PDPGQAKRL----------GVKVTPALFLVNPNTKKWYPVSQGFMSLDELEDR 213 (215)
T ss_pred -----CCHHHHHHc----------CCCcCCEEEEEECCCCeEEEEeeecCCHHHHHHh
Confidence 012233333 566779999999998 555566677676666554
No 125
>PTZ00062 glutaredoxin; Provisional
Probab=98.52 E-value=4.6e-07 Score=75.00 Aligned_cols=80 Identities=14% Similarity=0.003 Sum_probs=60.6
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCCCc
Q psy299 66 HVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAH 145 (240)
Q Consensus 66 k~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~ 145 (240)
..+|++||++|||+|+...+.|.++.++|.+ +.++.|..| |
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~--~~F~~V~~d-----------------------~-------------- 58 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFPS--LEFYVVNLA-----------------------D-------------- 58 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCCC--cEEEEEccc-----------------------c--------------
Confidence 4578999999999999999999999999864 888888421 1
Q ss_pred hHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccC
Q psy299 146 PLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTS 202 (240)
Q Consensus 146 ~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~ 202 (240)
+|..+|+++++ ++|+++.+..|. ++.+|...+.++...+
T Consensus 59 ----------------~V~~vPtfv~~-~~g~~i~r~~G~-~~~~~~~~~~~~~~~~ 97 (204)
T PTZ00062 59 ----------------ANNEYGVFEFY-QNSQLINSLEGC-NTSTLVSFIRGWAQKG 97 (204)
T ss_pred ----------------CcccceEEEEE-ECCEEEeeeeCC-CHHHHHHHHHHHcCCC
Confidence 34445787777 799999988764 4666777776665543
No 126
>PTZ00102 disulphide isomerase; Provisional
Probab=98.49 E-value=6.7e-07 Score=82.87 Aligned_cols=91 Identities=11% Similarity=0.215 Sum_probs=65.8
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc--CcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR--GLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNG 141 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~--~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~ 141 (240)
+++++||.||++||++|+...|.+.++.+.+.+. ++.+..|.++. . .+.+++++
T Consensus 48 ~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~-------~----~~l~~~~~------------- 103 (477)
T PTZ00102 48 ENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATE-------E----MELAQEFG------------- 103 (477)
T ss_pred cCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCC-------C----HHHHHhcC-------------
Confidence 4789999999999999999999999999888764 46677776541 1 12333333
Q ss_pred CCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhccc
Q psy299 142 DNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRT 201 (240)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~ 201 (240)
++..|+.++++..+. + .+.|..+.+.|.+.+++++..
T Consensus 104 ---------------------i~~~Pt~~~~~~g~~-~-~y~g~~~~~~l~~~l~~~~~~ 140 (477)
T PTZ00102 104 ---------------------VRGYPTIKFFNKGNP-V-NYSGGRTADGIVSWIKKLTGP 140 (477)
T ss_pred ---------------------CCcccEEEEEECCce-E-EecCCCCHHHHHHHHHHhhCC
Confidence 334478788866554 4 666777778888888887654
No 127
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.49 E-value=5.6e-07 Score=76.46 Aligned_cols=107 Identities=8% Similarity=0.066 Sum_probs=77.7
Q ss_pred ccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEee
Q psy299 58 VPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKI 137 (240)
Q Consensus 58 v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~ 137 (240)
-.++++.+++-|++|+.+.||+|....|.|+.+.++|+ +.|+.||+|.. .. -.||..
T Consensus 136 ~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg---~~v~~VS~DG~--~~---------------p~fp~~--- 192 (248)
T PRK13703 136 QAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTYG---LSVIPVSVDGV--IN---------------PLLPDS--- 192 (248)
T ss_pred HHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCC--CC---------------CCCCCC---
Confidence 34566678899999999999999999999999999875 89999999821 10 123332
Q ss_pred ecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCC-CeEEeccCCCCccchHHHHHHhccc
Q psy299 138 NVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNG-VPVERHAANASPASLIPHIEILGRT 201 (240)
Q Consensus 138 d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G-~Iv~~~~~~~~~~~l~~~L~~ll~~ 201 (240)
..+ ....+.+ ++..+|+.||++++. ++.-...|....++|.+.+..+..+
T Consensus 193 --~~d--~gqa~~l----------~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~t~ 243 (248)
T PRK13703 193 --RTD--QGQAQRL----------GVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFLNVSTD 243 (248)
T ss_pred --ccC--hhHHHhc----------CCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhc
Confidence 111 1111111 567789999999996 6655777888888898888887655
No 128
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=98.48 E-value=7.9e-07 Score=61.98 Aligned_cols=35 Identities=11% Similarity=0.028 Sum_probs=29.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEe
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAF 104 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~V 104 (240)
-|.||++|||+|....|.++++.+++... +.++-|
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~-~~~~~v 36 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGID-AEFEKV 36 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCC-eEEEEe
Confidence 47899999999999999999999998753 666555
No 129
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.48 E-value=6.1e-07 Score=76.62 Aligned_cols=107 Identities=7% Similarity=0.034 Sum_probs=76.9
Q ss_pred ccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEee
Q psy299 58 VPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKI 137 (240)
Q Consensus 58 v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~ 137 (240)
-.++++.+++-|++|+.+.||+|....|.|+.+.++|+ +.|+.||+|.. ..+ .||..
T Consensus 143 ~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~yg---i~v~~VS~DG~--~~p---------------~fp~~--- 199 (256)
T TIGR02739 143 KAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG---ISVIPISVDGT--LIP---------------GLPNS--- 199 (256)
T ss_pred HHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHhC---CeEEEEecCCC--CCC---------------CCCCc---
Confidence 34566678899999999999999999999999999875 99999999921 100 23332
Q ss_pred ecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCC-CCeEEeccCCCCccchHHHHHHhccc
Q psy299 138 NVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKN-GVPVERHAANASPASLIPHIEILGRT 201 (240)
Q Consensus 138 d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~-G~Iv~~~~~~~~~~~l~~~L~~ll~~ 201 (240)
.. + ....+.+ ++..+|+.||++++ +++.-...|..+.++|.+.+..++..
T Consensus 200 --~~-d-~gqa~~l----------~v~~~Pal~Lv~~~t~~~~pv~~G~iS~deL~~Ri~~v~~~ 250 (256)
T TIGR02739 200 --RS-D-SGQAQHL----------GVKYFPALYLVNPKSQKMSPLAYGFISQDELKERILNVLTQ 250 (256)
T ss_pred --cC-C-hHHHHhc----------CCccCceEEEEECCCCcEEEEeeccCCHHHHHHHHHHHHhc
Confidence 11 1 1122222 56678999999999 45555667888888888888776643
No 130
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=98.46 E-value=5.3e-07 Score=74.08 Aligned_cols=42 Identities=17% Similarity=0.136 Sum_probs=36.8
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
+++++||.||++||++|+...|.|.++..+|. .+.|+-|..+
T Consensus 101 ~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad 142 (192)
T cd02988 101 KDTWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIIST 142 (192)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhH
Confidence 35699999999999999999999999999986 4888888643
No 131
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=98.45 E-value=8.5e-07 Score=81.47 Aligned_cols=91 Identities=14% Similarity=0.100 Sum_probs=67.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc--CcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR--GLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNG 141 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~--~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~ 141 (240)
.++.+||.||++||++|+...|.+.++.+.+++. ++.++.+.++. + ..+-+
T Consensus 363 ~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~-------n-------------~~~~~------- 415 (462)
T TIGR01130 363 ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATA-------N-------------DVPPF------- 415 (462)
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCC-------C-------------ccCCC-------
Confidence 4799999999999999999999999999999973 58888886551 0 00000
Q ss_pred CCCchHHHHHhhhcCCcccccccccceEEEEcCCCCe-EEeccCCCCccchHHHHHHhccc
Q psy299 142 DNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVP-VERHAANASPASLIPHIEILGRT 201 (240)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~I-v~~~~~~~~~~~l~~~L~~ll~~ 201 (240)
.+...|+.+++.+.++. ...+.+..+.+.|.+.|.+....
T Consensus 416 --------------------~i~~~Pt~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~ 456 (462)
T TIGR01130 416 --------------------EVEGFPTIKFVPAGKKSEPVPYDGDRTLEDFSKFIAKHATF 456 (462)
T ss_pred --------------------CccccCEEEEEeCCCCcCceEecCcCCHHHHHHHHHhcCCC
Confidence 34556899999776652 34566667777788888776644
No 132
>PLN02309 5'-adenylylsulfate reductase
Probab=98.44 E-value=1e-06 Score=81.16 Aligned_cols=44 Identities=20% Similarity=0.370 Sum_probs=40.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
+++++||.||++||++|+...|.+.++.++|...++.|+.|.+|
T Consensus 364 ~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 364 RKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 68999999999999999999999999999998778999888765
No 133
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=98.37 E-value=9.8e-07 Score=67.78 Aligned_cols=25 Identities=12% Similarity=0.214 Sum_probs=21.3
Q ss_pred CCCcEEEEEEecCCCCCcHHHHHHH
Q psy299 63 YKGHVLVIVNVASRCGYTGKHYKEL 87 (240)
Q Consensus 63 ~~gk~vlv~F~atwCp~C~~~~~~L 87 (240)
-.||+++|+|.+.||++|+..-..+
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~ 45 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAF 45 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHh
Confidence 3589999999999999999876554
No 134
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.34 E-value=2.1e-06 Score=71.67 Aligned_cols=94 Identities=20% Similarity=0.195 Sum_probs=62.4
Q ss_pred CCCCCcEEEEEEec---CCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEee
Q psy299 61 STYKGHVLVIVNVA---SRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKI 137 (240)
Q Consensus 61 s~~~gk~vlv~F~a---twCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~ 137 (240)
+..++...++.|.+ +||++|+...|.+.++.+++.. +.+..+.+|. ++..+.++++
T Consensus 15 ~~~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~--~~i~~v~vd~---------~~~~~l~~~~---------- 73 (215)
T TIGR02187 15 KELKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPK--LKLEIYDFDT---------PEDKEEAEKY---------- 73 (215)
T ss_pred HhcCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCC--ceEEEEecCC---------cccHHHHHHc----------
Confidence 33455555666777 9999999999999999999853 5554555441 1122333333
Q ss_pred ecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeE-EeccCCCCccchHHHHHHhcc
Q psy299 138 NVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPV-ERHAANASPASLIPHIEILGR 200 (240)
Q Consensus 138 d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv-~~~~~~~~~~~l~~~L~~ll~ 200 (240)
++..+|++++++ +|+.+ .++.|..+.+++...|+.+++
T Consensus 74 ------------------------~V~~~Pt~~~f~-~g~~~~~~~~G~~~~~~l~~~i~~~~~ 112 (215)
T TIGR02187 74 ------------------------GVERVPTTIILE-EGKDGGIRYTGIPAGYEFAALIEDIVR 112 (215)
T ss_pred ------------------------CCCccCEEEEEe-CCeeeEEEEeecCCHHHHHHHHHHHHH
Confidence 344557776664 67776 477777777778888888764
No 135
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.08 E-value=7.8e-06 Score=59.12 Aligned_cols=47 Identities=23% Similarity=0.294 Sum_probs=40.3
Q ss_pred cCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeec
Q psy299 59 PLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106 (240)
Q Consensus 59 ~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~ 106 (240)
.....+++++++.||++|||+|+..+|.+.++.+++.. .+.++.+..
T Consensus 26 ~~~~~~~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~ 72 (127)
T COG0526 26 SLSELKGKPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNV 72 (127)
T ss_pred ehhhcCCceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEEC
Confidence 34444589999999999999999999999999999987 578888865
No 136
>KOG0190|consensus
Probab=98.07 E-value=6.7e-06 Score=75.85 Aligned_cols=114 Identities=10% Similarity=0.139 Sum_probs=79.5
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc--CcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCC
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRDR--GLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGD 142 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~--~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~ 142 (240)
...+||.|+|+||++|+...|+..+....+++. .+.+.-|-+ +.+ ..++.+|+++
T Consensus 42 ~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDa---------t~~--~~~~~~y~v~------------ 98 (493)
T KOG0190|consen 42 HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDA---------TEE--SDLASKYEVR------------ 98 (493)
T ss_pred CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeec---------chh--hhhHhhhcCC------------
Confidence 468899999999999999999999999999997 455555532 222 5556655543
Q ss_pred CCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCC----CcceeEEEEcCCCC
Q psy299 143 NAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAI----KWNFTKFIVDKNGA 218 (240)
Q Consensus 143 ~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i----~~~~~~~~i~~~~~ 218 (240)
+.|+ +.|.++|+....|.|.-..+.+...|++.-.-... +-..+.|+-++...
T Consensus 99 ----------------------gyPT-lkiFrnG~~~~~Y~G~r~adgIv~wl~kq~gPa~~~l~~~~~a~~~l~~~~~~ 155 (493)
T KOG0190|consen 99 ----------------------GYPT-LKIFRNGRSAQDYNGPREADGIVKWLKKQSGPASKTLKTVDEAEEFLSKKDVV 155 (493)
T ss_pred ----------------------CCCe-EEEEecCCcceeccCcccHHHHHHHHHhccCCCceecccHHHHHhhccCCceE
Confidence 3344 35558898877777777777788887775543322 33667777776666
Q ss_pred eeeecc
Q psy299 219 PVERHA 224 (240)
Q Consensus 219 ~~~~~~ 224 (240)
++-.|.
T Consensus 156 vig~F~ 161 (493)
T KOG0190|consen 156 VIGFFK 161 (493)
T ss_pred EEEEec
Confidence 666554
No 137
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.06 E-value=2.4e-05 Score=65.29 Aligned_cols=42 Identities=14% Similarity=0.015 Sum_probs=30.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
.+.+.++.||++|||+|+...+.++++..++. ++.+.-+..|
T Consensus 132 ~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~--~i~~~~vD~~ 173 (215)
T TIGR02187 132 DEPVRIEVFVTPTCPYCPYAVLMAHKFALAND--KILGEMIEAN 173 (215)
T ss_pred CCCcEEEEEECCCCCCcHHHHHHHHHHHHhcC--ceEEEEEeCC
Confidence 44556666999999999999898888887643 4666656433
No 138
>PHA02125 thioredoxin-like protein
Probab=97.97 E-value=4.4e-05 Score=52.86 Aligned_cols=22 Identities=14% Similarity=0.101 Sum_probs=19.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHH
Q psy299 69 VIVNVASRCGYTGKHYKELVEL 90 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l 90 (240)
++.|+++||++|+...|.|+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~ 23 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANV 23 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHH
Confidence 7899999999999999988653
No 139
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=97.95 E-value=5.3e-05 Score=54.43 Aligned_cols=46 Identities=9% Similarity=0.016 Sum_probs=37.5
Q ss_pred CCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 60 LSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 60 ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++++++.+-+..|+++||++|+...+.++++.+.+. ++.+..+..|
T Consensus 7 ~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~ 52 (89)
T cd03026 7 IRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGA 52 (89)
T ss_pred HHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhH
Confidence 346788889999999999999999999999888765 4777777543
No 140
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=97.94 E-value=7.4e-05 Score=50.17 Aligned_cols=38 Identities=11% Similarity=0.096 Sum_probs=30.6
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 68 LVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 68 vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
-+..|+++|||+|+...+.|+++.+.+. ++.+..+..|
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~--~i~~~~id~~ 39 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNP--NISAEMIDAA 39 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCC--ceEEEEEEcc
Confidence 4688999999999999999999876543 5778777654
No 141
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=97.85 E-value=0.00035 Score=58.36 Aligned_cols=140 Identities=14% Similarity=0.214 Sum_probs=92.0
Q ss_pred cccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcC---cEEEEeecCCCCCCCCCCHHH
Q psy299 43 ETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRG---LRILAFPCNQFGGQEPGDADQ 119 (240)
Q Consensus 43 ~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~---v~vi~Vs~D~~~~~~~~~~e~ 119 (240)
++.|.+++.+. -...+..|+++||-+.-.+|..|...+..|..|..++...| |.++.|+- +...+...
T Consensus 8 ~~~p~W~i~~~----~pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~-----~~~~s~~~ 78 (238)
T PF04592_consen 8 KPPPPWKIGGQ----DPMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNH-----QGEHSRLK 78 (238)
T ss_pred CCCCCceECCc----hHhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcC-----CCcchhHH
Confidence 45677776443 34677899999999999999999999999999999999874 67777762 21122222
Q ss_pred HHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCC---CccchHHHHH
Q psy299 120 ICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANA---SPASLIPHIE 196 (240)
Q Consensus 120 ~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~---~~~~l~~~L~ 196 (240)
...+..+....+|++.+ .......|..++.... .+||+|+=|++.+.....- ....++++|+
T Consensus 79 ~~~l~~r~~~~ipVyqq----~~~q~dvW~~L~G~kd-----------D~~iyDRCGrL~~~i~~P~S~l~~~~ve~Ai~ 143 (238)
T PF04592_consen 79 YWELKRRVSEHIPVYQQ----DENQPDVWELLNGSKD-----------DFLIYDRCGRLTYHIPLPYSFLQFPYVEAAIK 143 (238)
T ss_pred HHHHHHhCCCCCceecC----CccccCHHHHhCCCcC-----------cEEEEeccCcEEEEecCcHHHhcCHHHHHHHH
Confidence 23344445556898831 1222345655533222 4599999999998764322 2334777887
Q ss_pred HhcccCCCCc
Q psy299 197 ILGRTSAIKW 206 (240)
Q Consensus 197 ~ll~~~~i~~ 206 (240)
...-.+.-.|
T Consensus 144 ~ty~~~~CG~ 153 (238)
T PF04592_consen 144 STYCEDPCGN 153 (238)
T ss_pred HHHccccCCC
Confidence 7776665444
No 142
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=97.84 E-value=0.0001 Score=51.85 Aligned_cols=43 Identities=16% Similarity=0.265 Sum_probs=32.4
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHH---HHHHHHHhhcCcEEEEeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKEL---VELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L---~~l~~~~~~~~v~vi~Vs~D 107 (240)
.||+++|.|++.||+.|+..-..+ .++.+.+.+ ++..+-|..+
T Consensus 16 ~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~-~fv~v~vd~~ 61 (82)
T PF13899_consen 16 EGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNK-NFVLVKVDVD 61 (82)
T ss_dssp HTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHH-CSEEEEEETT
T ss_pred cCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHC-CEEEEEEEcC
Confidence 489999999999999999987666 344444554 5777777644
No 143
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=97.83 E-value=0.00011 Score=46.93 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=32.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
|+.||.+||+.|....+.++++ ++...++.++.++++
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~ 37 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVD 37 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcC
Confidence 5789999999999999999998 445557999999877
No 144
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.79 E-value=0.00051 Score=56.67 Aligned_cols=93 Identities=14% Similarity=0.205 Sum_probs=74.2
Q ss_pred ccccccCCcccCCeEeecCCCCcccCCC-CCCcEEEEE--Ee-----cCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeec
Q psy299 35 ADDSWKNAETVYDFTVKNIKGEDVPLST-YKGHVLVIV--NV-----ASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106 (240)
Q Consensus 35 ~~~~~~~g~~~p~f~l~d~~G~~v~ls~-~~gk~vlv~--F~-----atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~ 106 (240)
.-..++++..-.+..+.+.+|. ++|.+ |.|+-.||. |. ...||.|...+..+......+..+++.++.||-
T Consensus 36 ~RR~LP~v~v~~~Y~F~g~~G~-v~L~dLF~Gr~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSr 114 (211)
T PF05988_consen 36 ERRRLPMVEVDKDYVFDGPDGP-VSLADLFEGRRQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSR 114 (211)
T ss_pred HHhhCCCccCCCCeEEeCCCCc-ccHHHHcCCCceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeC
Confidence 3345667777777888888886 88988 577654443 32 235999999999998888889999999999995
Q ss_pred CCCCCCCCCCHHHHHHHHHhcCcceeeeEe
Q psy299 107 NQFGGQEPGDADQICEFTKKKNVQFDLFEK 136 (240)
Q Consensus 107 D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~ 136 (240)
. ..+++..|.++-|-+||+++.
T Consensus 115 a--------P~~~i~afk~rmGW~~pw~Ss 136 (211)
T PF05988_consen 115 A--------PLEKIEAFKRRMGWTFPWYSS 136 (211)
T ss_pred C--------CHHHHHHHHHhcCCCceEEEc
Confidence 4 789999999999999999953
No 145
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.76 E-value=2.3e-05 Score=61.77 Aligned_cols=39 Identities=23% Similarity=0.492 Sum_probs=35.6
Q ss_pred CCCCcceeEEEEcCCCCeeeeccCCCCccchhhhhhhcC
Q psy299 202 SAIKWNFTKFIVDKNGAPVERHAANASPASLIPNIEKYL 240 (240)
Q Consensus 202 ~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (240)
.-+.|||.+||||++|+++++|.....++++.+.|+..|
T Consensus 115 ~~p~~~~~tflID~~G~v~~~~~g~~~~~~l~~~i~~l~ 153 (153)
T TIGR02540 115 KEPRWNFWKYLVNPEGQVVKFWRPEEPVEEIRPEITALV 153 (153)
T ss_pred CCCCCccEEEEEcCCCcEEEEECCCCCHHHHHHHHHHhC
Confidence 357999999999999999999999999999999998754
No 146
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=97.76 E-value=9.8e-06 Score=62.37 Aligned_cols=83 Identities=14% Similarity=0.198 Sum_probs=46.9
Q ss_pred CCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeec
Q psy299 60 LSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINV 139 (240)
Q Consensus 60 ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~ 139 (240)
++....+..++.|..+|||-|...+|.|.++.+..+ ++.+=.++.| +++ +...++-
T Consensus 36 l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd-------~~~----el~~~~l----------- 91 (129)
T PF14595_consen 36 LKSIQKPYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRD-------ENK----ELMDQYL----------- 91 (129)
T ss_dssp HHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HH-------HHH----HHTTTTT-----------
T ss_pred HHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEec-------CCh----hHHHHHH-----------
Confidence 344566788999999999999999999999999865 3555444433 112 2111111
Q ss_pred CCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCC
Q psy299 140 NGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANA 186 (240)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~ 186 (240)
..+.+.+|+++++|.+|+.+.+++...
T Consensus 92 --------------------t~g~~~IP~~I~~d~~~~~lg~wgerP 118 (129)
T PF14595_consen 92 --------------------TNGGRSIPTFIFLDKDGKELGRWGERP 118 (129)
T ss_dssp --------------------T-SS--SSEEEEE-TT--EEEEEESS-
T ss_pred --------------------hCCCeecCEEEEEcCCCCEeEEEcCCC
Confidence 013445689999999999999986543
No 147
>smart00594 UAS UAS domain.
Probab=97.72 E-value=0.00011 Score=55.92 Aligned_cols=89 Identities=10% Similarity=0.065 Sum_probs=56.6
Q ss_pred CCCcEEEEEEecCCCCCcHHHHHHH---HHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeec
Q psy299 63 YKGHVLVIVNVASRCGYTGKHYKEL---VELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINV 139 (240)
Q Consensus 63 ~~gk~vlv~F~atwCp~C~~~~~~L---~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~ 139 (240)
-.+|+++|+|++.||+.|......+ .++.+.+.+ ++.++.+..+ +.+. .+++.++++
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~-~fv~~~~dv~--------~~eg-~~l~~~~~~---------- 84 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRE-NFIFWQVDVD--------TSEG-QRVSQFYKL---------- 84 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHc-CEEEEEecCC--------ChhH-HHHHHhcCc----------
Confidence 4689999999999999999875442 223333333 4666566443 2222 334443332
Q ss_pred CCCCCchHHHHHhhhcCCcccccccccceEEEEcCCC-----CeEEeccCCCCccchHHHH
Q psy299 140 NGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNG-----VPVERHAANASPASLIPHI 195 (240)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G-----~Iv~~~~~~~~~~~l~~~L 195 (240)
...|+..++|++| +++.+..|..++++|...|
T Consensus 85 ------------------------~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 85 ------------------------DSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ------------------------CCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 2347889999998 4667777888877776654
No 148
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.42 E-value=0.00029 Score=65.97 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=63.7
Q ss_pred CCCCCCcEEEEEEecCCCCCcHHHHHHHH-HHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeee
Q psy299 60 LSTYKGHVLVIVNVASRCGYTGKHYKELV-ELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKIN 138 (240)
Q Consensus 60 ls~~~gk~vlv~F~atwCp~C~~~~~~L~-~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d 138 (240)
+++.++||++++|+|.||-.|+..-+..= +-+...+-.+++.+-+... .+..+..++++++|.
T Consensus 469 la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT-------~~~p~~~~lLk~~~~--------- 532 (569)
T COG4232 469 LAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVT-------ANDPAITALLKRLGV--------- 532 (569)
T ss_pred HHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeec-------CCCHHHHHHHHHcCC---------
Confidence 34556789999999999999997655443 4444444446666555332 233455566665553
Q ss_pred cCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHh
Q psy299 139 VNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198 (240)
Q Consensus 139 ~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~l 198 (240)
...|+.++++++|+-...-.+..+.+.+.+.|++.
T Consensus 533 -------------------------~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 533 -------------------------FGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred -------------------------CCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 22378889998886555555566667788877664
No 149
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=97.42 E-value=0.00012 Score=62.01 Aligned_cols=39 Identities=51% Similarity=0.832 Sum_probs=35.2
Q ss_pred CCCCcceeEEEEcCCCCeeeeccCCCCccchhhhhhhcC
Q psy299 202 SAIKWNFTKFIVDKNGAPVERHAANASPASLIPNIEKYL 240 (240)
Q Consensus 202 ~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (240)
..|.|++++||||++|+++++|.....++++.+.|++.|
T Consensus 196 ~~i~~~PttfLIDk~GkVv~~~~G~~~~~~le~~I~~lL 234 (236)
T PLN02399 196 DLIKWNFEKFLVDKNGKVVERYPPTTSPFQIEKDIQKLL 234 (236)
T ss_pred CccccCceEEEECCCCcEEEEECCCCCHHHHHHHHHHHh
Confidence 367999999999999999999999999998888888764
No 150
>KOG0191|consensus
Probab=97.42 E-value=0.00089 Score=60.71 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=36.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeec
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~ 106 (240)
.+++.+|.|+++||++|....|..+++...+++. +.+..|.+
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~-~~~~~vd~ 87 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGK-VKIGAVDC 87 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCc-eEEEEeCc
Confidence 4689999999999999999999999999999973 66666643
No 151
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00023 Score=55.67 Aligned_cols=40 Identities=43% Similarity=0.705 Sum_probs=37.6
Q ss_pred cccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhccc
Q psy299 162 AIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRT 201 (240)
Q Consensus 162 ~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~ 201 (240)
.|.|+.+.||||++|+++.|+.+...|+++..+|+++|++
T Consensus 123 ~IkWNFtKFLvdr~G~VV~Rf~p~t~P~d~~~~Ie~lL~~ 162 (162)
T COG0386 123 DIKWNFTKFLVDRDGNVVKRFSPKTKPEDIELAIEKLLAE 162 (162)
T ss_pred ccceeeEEEEEcCCCcEEEeeCCCCChhhHHHHHHHHhcC
Confidence 7889999999999999999999999999999999999864
No 152
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0017 Score=50.65 Aligned_cols=85 Identities=19% Similarity=0.259 Sum_probs=62.4
Q ss_pred ccCCcccCCeEeecC------CC-CcccCCC-CCCcEE-EEEEecCCCCCcHH-HHHHHHHHHHHHhhcCcEEE-EeecC
Q psy299 39 WKNAETVYDFTVKNI------KG-EDVPLST-YKGHVL-VIVNVASRCGYTGK-HYKELVELDEKFRDRGLRIL-AFPCN 107 (240)
Q Consensus 39 ~~~g~~~p~f~l~d~------~G-~~v~ls~-~~gk~v-lv~F~atwCp~C~~-~~~~L~~l~~~~~~~~v~vi-~Vs~D 107 (240)
...|+++|..+++.. +| ..++..+ ++||.+ |...-+...|.|.. ++|...+++++++.+||+-| -||+|
T Consensus 3 ~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gKkVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cVSVN 82 (165)
T COG0678 3 IMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGKKVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCVSVN 82 (165)
T ss_pred cccCCcCCceEeEEeeccccCCCcccccHHHhcCCCEEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEEEeC
Confidence 357899999887654 22 2344444 577654 44445777899988 79999999999999987644 46666
Q ss_pred CCCCCCCCCHHHHHHHHHhcCcce
Q psy299 108 QFGGQEPGDADQICEFTKKKNVQF 131 (240)
Q Consensus 108 ~~~~~~~~~~e~~~~~~~~~~~~f 131 (240)
+.-.+..+.+..+..-
T Consensus 83 --------D~FVm~AWak~~g~~~ 98 (165)
T COG0678 83 --------DAFVMNAWAKSQGGEG 98 (165)
T ss_pred --------cHHHHHHHHHhcCCCc
Confidence 8999999999888763
No 153
>KOG0541|consensus
Probab=97.36 E-value=0.0011 Score=52.01 Aligned_cols=100 Identities=14% Similarity=0.240 Sum_probs=69.6
Q ss_pred ccccccCCcccCC--eE-eecCC----CCcccCCC-CCCc-EEEEEEecCCCCC-cHHHHHHHHHHHHHHhhcCcEEE-E
Q psy299 35 ADDSWKNAETVYD--FT-VKNIK----GEDVPLST-YKGH-VLVIVNVASRCGY-TGKHYKELVELDEKFRDRGLRIL-A 103 (240)
Q Consensus 35 ~~~~~~~g~~~p~--f~-l~d~~----G~~v~ls~-~~gk-~vlv~F~atwCp~-C~~~~~~L~~l~~~~~~~~v~vi-~ 103 (240)
.......|+.+|+ ++ +.|.. +.++++++ ++|| ++|.-.-+...|. |..++|.+-+..++++.+|++.| -
T Consensus 5 ~~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GKKvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~iic 84 (171)
T KOG0541|consen 5 VMAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGKKVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEIIC 84 (171)
T ss_pred ccccccccCccccccchhhccCccccccceEEhHHhcCCceEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEEEE
Confidence 3456788999999 44 22222 22677877 4785 5554455666776 66779999999999999987764 4
Q ss_pred eecCCCCCCCCCCHHHHHHHHHhcCcce--eeeEeeecCCCCC
Q psy299 104 FPCNQFGGQEPGDADQICEFTKKKNVQF--DLFEKINVNGDNA 144 (240)
Q Consensus 104 Vs~D~~~~~~~~~~e~~~~~~~~~~~~f--p~~~~~d~~~~~~ 144 (240)
||+| ++-.++.+.+.++.+- .++ .|..+...
T Consensus 85 vSVn--------DpFv~~aW~k~~g~~~~V~f~--aD~~g~ft 117 (171)
T KOG0541|consen 85 VSVN--------DPFVMKAWAKSLGANDHVKFV--ADPAGEFT 117 (171)
T ss_pred EecC--------cHHHHHHHHhhcCccceEEEE--ecCCCcee
Confidence 7776 8999999999888754 444 45555543
No 154
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=97.29 E-value=0.0095 Score=47.03 Aligned_cols=140 Identities=16% Similarity=0.188 Sum_probs=85.0
Q ss_pred cCCcccCCeEeec----------CCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHH-HhhcCcEEEE-eecC
Q psy299 40 KNAETVYDFTVKN----------IKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEK-FRDRGLRILA-FPCN 107 (240)
Q Consensus 40 ~~g~~~p~f~l~d----------~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~-~~~~~v~vi~-Vs~D 107 (240)
..|+++|.+.+.| ...+..+.+.+.||+-+|.+.|--...-..--|-+.++.+. +....+...+ |++|
T Consensus 2 ~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~GKVrviq~iAGr~sake~N~~l~~aik~a~f~~d~yqtttIiN~d 81 (160)
T PF09695_consen 2 TLGQPVPPVTVADKGELILNGDKISYQPWNSAQLPGKVRVIQHIAGRSSAKEMNAPLIEAIKAAKFPHDKYQTTTIINLD 81 (160)
T ss_pred cCCCcCCceEecCCceEEEcCCcccccccCccccCCCEEEEEEeccCCchhHhhHHHHHHHHHcCCCccceeEEEEEecc
Confidence 4577888877654 23345666778999999999876665544445666666666 6655566655 3443
Q ss_pred CCCCCCCCCHHHHHHHHHhcC--ccee-eeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccC
Q psy299 108 QFGGQEPGDADQICEFTKKKN--VQFD-LFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAA 184 (240)
Q Consensus 108 ~~~~~~~~~~e~~~~~~~~~~--~~fp-~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~ 184 (240)
+ ..-.+-.-++..++... .++. ++ +|.+|... ..++.- . -.-..+++|++|+|++...|
T Consensus 82 D---Ai~gt~~fVrss~e~~kk~~p~s~~v--lD~~G~~~-~aW~L~-~-----------~~SaiiVlDK~G~V~F~k~G 143 (160)
T PF09695_consen 82 D---AIWGTGGFVRSSAEDSKKEFPWSQFV--LDSNGVVR-KAWQLQ-E-----------ESSAIIVLDKQGKVQFVKEG 143 (160)
T ss_pred c---ccccchHHHHHHHHHhhhhCCCcEEE--EcCCCcee-ccccCC-C-----------CCceEEEEcCCccEEEEECC
Confidence 1 11223344455554433 3443 33 56666542 233210 0 01245899999999999999
Q ss_pred CCCccchHHHHHH
Q psy299 185 NASPASLIPHIEI 197 (240)
Q Consensus 185 ~~~~~~l~~~L~~ 197 (240)
..+++++.+-|.-
T Consensus 144 ~Ls~~Ev~qVi~L 156 (160)
T PF09695_consen 144 ALSPAEVQQVIAL 156 (160)
T ss_pred CCCHHHHHHHHHH
Confidence 9999887766543
No 155
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.24 E-value=0.00023 Score=58.83 Aligned_cols=37 Identities=38% Similarity=0.664 Sum_probs=33.0
Q ss_pred CCCcceeEEEEcCCCCeeeeccCCCCccchhhhhhhc
Q psy299 203 AIKWNFTKFIVDKNGAPVERHAANASPASLIPNIEKY 239 (240)
Q Consensus 203 ~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
.|.|+|++||||++|+++++|.....++++.+.|++.
T Consensus 141 ~i~~~~~tflID~~G~iv~~~~g~~~~~~l~~~I~~l 177 (199)
T PTZ00056 141 AIGWNFGKFLVNKSGNVVAYFSPRTEPLELEKKIAEL 177 (199)
T ss_pred ccCCCCEEEEECCCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999988888888887764
No 156
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=97.23 E-value=0.0015 Score=43.87 Aligned_cols=46 Identities=20% Similarity=0.167 Sum_probs=31.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKN 128 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~ 128 (240)
+..|+++|||+|+...+.|.+ .++.+..+.++ .+.+..+++.+.++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~-------~~~~~~~~~~~~~~ 47 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVE-------KDSAAREEVLKVLG 47 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEecc-------CCHHHHHHHHHHhC
Confidence 567899999999988777654 46777777665 24444455555444
No 157
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.22 E-value=0.0045 Score=48.72 Aligned_cols=104 Identities=13% Similarity=0.210 Sum_probs=67.6
Q ss_pred CCCCCcEEEEEEecCCCCCcHHHH---HHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEee
Q psy299 61 STYKGHVLVIVNVASRCGYTGKHY---KELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKI 137 (240)
Q Consensus 61 s~~~gk~vlv~F~atwCp~C~~~~---~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~ 137 (240)
....+|+.++.|-...|++|...- ..-.++++-+.. ++.++-+... + .=|+....
T Consensus 38 i~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~-hf~~~~l~i~-------~--------------skpv~f~~ 95 (182)
T COG2143 38 ISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKE-HFSAYYLNIS-------Y--------------SKPVLFKV 95 (182)
T ss_pred cCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhh-CeEEEEEEec-------c--------------CcceEeec
Confidence 345789999999999999998763 344555666665 3666665432 0 01232111
Q ss_pred ecCCCCC--chHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHH
Q psy299 138 NVNGDNA--HPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIE 196 (240)
Q Consensus 138 d~~~~~~--~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~ 196 (240)
+..-... .+|.+-+ +++.+|++++.|.+|+-+....|..+++++..-++
T Consensus 96 g~kee~~s~~ELa~kf----------~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~vlk 146 (182)
T COG2143 96 GDKEEKMSTEELAQKF----------AVRSTPTFVFFDKTGKTILELPGYMPPEQFLAVLK 146 (182)
T ss_pred CceeeeecHHHHHHHh----------ccccCceEEEEcCCCCEEEecCCCCCHHHHHHHHH
Confidence 1111111 2444433 68888999999999999999999999988654443
No 158
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=97.17 E-value=0.0032 Score=47.47 Aligned_cols=93 Identities=11% Similarity=0.089 Sum_probs=62.8
Q ss_pred CCCCcEEEEEEecC----CCCCcHHHH--HHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeE
Q psy299 62 TYKGHVLVIVNVAS----RCGYTGKHY--KELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFE 135 (240)
Q Consensus 62 ~~~gk~vlv~F~at----wCp~C~~~~--~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~ 135 (240)
.-.+|+++|++... ||..|+..+ |.+.+..+ .++.+++.++. +.+. .+.+...+
T Consensus 14 k~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln----~~fv~w~~dv~--------~~eg-~~la~~l~------- 73 (116)
T cd02991 14 KQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN----TRMLFWACSVA--------KPEG-YRVSQALR------- 73 (116)
T ss_pred HhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH----cCEEEEEEecC--------ChHH-HHHHHHhC-------
Confidence 34689999999999 777887665 55555443 35766666654 2221 22222222
Q ss_pred eeecCCCCCchHHHHHhhhcCCcccccccccceEEEE---cCCCCeEEeccCCCCccchHHHHHHhccc
Q psy299 136 KINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIV---DKNGVPVERHAANASPASLIPHIEILGRT 201 (240)
Q Consensus 136 ~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lI---D~~G~Iv~~~~~~~~~~~l~~~L~~ll~~ 201 (240)
+...|...+| +.+.+++.+..|..++++|...|+.++++
T Consensus 74 ---------------------------~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~~~~~ 115 (116)
T cd02991 74 ---------------------------ERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTFIMDA 115 (116)
T ss_pred ---------------------------CCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 2234676777 66677899999999999999999988764
No 159
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=97.11 E-value=0.01 Score=50.85 Aligned_cols=137 Identities=16% Similarity=0.157 Sum_probs=78.0
Q ss_pred CCcccCCeEeecCCCCcccCCC-CCCcEEEEEEecC-CCCCcHHHH--HHHHHHHHHHhhcCcEEEEeecCCCCCCCCCC
Q psy299 41 NAETVYDFTVKNIKGEDVPLST-YKGHVLVIVNVAS-RCGYTGKHY--KELVELDEKFRDRGLRILAFPCNQFGGQEPGD 116 (240)
Q Consensus 41 ~g~~~p~f~l~d~~G~~v~ls~-~~gk~vlv~F~at-wCp~C~~~~--~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~ 116 (240)
....+|+|..+++.|+.+++.+ ++||+.||..+.+ |-..|.... |.+.+....-.. .+.+|-|++-
T Consensus 97 kAlyFP~l~g~tL~g~~~~~~~~l~gkvSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~-~~q~v~In~~--------- 166 (252)
T PF05176_consen 97 KALYFPNLQGKTLAGNKVDTTDLLRGKVSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYG-RVQIVEINLI--------- 166 (252)
T ss_pred hCCcCCCCccccCCCCCcccccccCCceEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCC-ceEEEEEecc---------
Confidence 4457899999999999998866 6899887777644 332333321 333333322111 5888888753
Q ss_pred HHHHHHHHHh-------cCcc---eeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCC
Q psy299 117 ADQICEFTKK-------KNVQ---FDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANA 186 (240)
Q Consensus 117 ~e~~~~~~~~-------~~~~---fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~ 186 (240)
...++.++.. .+++ ...+. +-..+.....+.+.++..+. .+.++||||.+|+|++...|..
T Consensus 167 e~~~k~~l~~~~~~~lrk~ip~~~h~~Yf-~~~~~~~~~~iRe~Lgi~N~--------~~GYvyLVD~~grIRWagsG~A 237 (252)
T PF05176_consen 167 ENWLKSWLVKLFMGSLRKSIPEERHDRYF-IVYRGQLSDDIREALGINNS--------YVGYVYLVDPNGRIRWAGSGPA 237 (252)
T ss_pred hHHHHHHHHHHHhhhhhccCCHHHCceEE-EEeCCcccHHHHHHhCCCCC--------CcCeEEEECCCCeEEeCccCCC
Confidence 3333333321 1111 11110 01112123334444433322 2346799999999999999999
Q ss_pred CccchHHHHH
Q psy299 187 SPASLIPHIE 196 (240)
Q Consensus 187 ~~~~l~~~L~ 196 (240)
+++++....+
T Consensus 238 t~~E~~~L~k 247 (252)
T PF05176_consen 238 TPEELESLWK 247 (252)
T ss_pred CHHHHHHHHH
Confidence 9888665443
No 160
>KOG0190|consensus
Probab=97.08 E-value=0.00057 Score=63.31 Aligned_cols=41 Identities=24% Similarity=0.346 Sum_probs=35.5
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc-CcEEEEe
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR-GLRILAF 104 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~-~v~vi~V 104 (240)
.+|-+||.|+|+||++|++.-|.+++|.+.|++. ++.|.-+
T Consensus 383 e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKm 424 (493)
T KOG0190|consen 383 EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKM 424 (493)
T ss_pred cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEe
Confidence 4789999999999999999999999999999996 4554444
No 161
>KOG0912|consensus
Probab=97.04 E-value=0.0014 Score=56.86 Aligned_cols=117 Identities=15% Similarity=0.247 Sum_probs=76.1
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc---C-cEEEEeecCCCCCCCCCCHHHHHHHHHhcCcc-eeeeEeeec
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRDR---G-LRILAFPCNQFGGQEPGDADQICEFTKKKNVQ-FDLFEKINV 139 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~---~-v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~-fp~~~~~d~ 139 (240)
...++|+|+|.||+.+++..|.+.+....++.. | ++.-.|.+| .. ...+.+|.++ ||.+
T Consensus 13 ~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd--------~e---~~ia~ky~I~KyPTl----- 76 (375)
T KOG0912|consen 13 NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD--------KE---DDIADKYHINKYPTL----- 76 (375)
T ss_pred ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc--------hh---hHHhhhhccccCcee-----
Confidence 578999999999999999999999988888764 2 333345444 11 1233344432 3332
Q ss_pred CCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEE-eccCCCCccchHHHHHHhcccCCCCc-----ceeEEEE
Q psy299 140 NGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVE-RHAANASPASLIPHIEILGRTSAIKW-----NFTKFIV 213 (240)
Q Consensus 140 ~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~-~~~~~~~~~~l~~~L~~ll~~~~i~~-----~~~~~~i 213 (240)
=|+ ++|.+.. .|.++-..+.|.+.+++-++.+ |+. ....+.+
T Consensus 77 ------------------------------Kvf-rnG~~~~rEYRg~RsVeaL~efi~kq~s~~-i~Ef~sl~~l~n~~~ 124 (375)
T KOG0912|consen 77 ------------------------------KVF-RNGEMMKREYRGQRSVEALIEFIEKQLSDP-INEFESLDQLQNLDI 124 (375)
T ss_pred ------------------------------eee-eccchhhhhhccchhHHHHHHHHHHHhccH-HHHHHhHHHHHhhhc
Confidence 233 7787776 4556666677888888777665 211 3344556
Q ss_pred cCCCCeeeeccCCCCc
Q psy299 214 DKNGAPVERHAANASP 229 (240)
Q Consensus 214 ~~~~~~~~~~~~~~~~ 229 (240)
-++|.++-+|.+.-+|
T Consensus 125 p~K~~vIgyF~~kdsp 140 (375)
T KOG0912|consen 125 PSKRTVIGYFPSKDSP 140 (375)
T ss_pred cccceEEEEeccCCCc
Confidence 6778888887766666
No 162
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.01 E-value=0.00061 Score=55.40 Aligned_cols=39 Identities=38% Similarity=0.773 Sum_probs=34.3
Q ss_pred CCCCcceeEEEEcCCCCeeeeccCCCCccchhhhhhhcC
Q psy299 202 SAIKWNFTKFIVDKNGAPVERHAANASPASLIPNIEKYL 240 (240)
Q Consensus 202 ~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (240)
..|-|||++||||++|+++++|.....++++.+.|++.|
T Consensus 143 ~~iP~~~~tflID~~G~Iv~~~~g~~~~~~l~~~I~~ll 181 (183)
T PTZ00256 143 RQIPWNFAKFLIDGQGKVVKYFSPKVNPNEMIQDIEKLL 181 (183)
T ss_pred cccCcceEEEEECCCCCEEEEECCCCCHHHHHHHHHHHh
Confidence 367899999999999999999999988888888887654
No 163
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=96.94 E-value=0.005 Score=45.92 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=57.2
Q ss_pred HHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhc-----------
Q psy299 87 LVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQ----------- 155 (240)
Q Consensus 87 L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~----------- 155 (240)
|.+..++++..|+.+|.|++. +.+.+++|++..+.++|++ .|+. ..+|+.++...
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g--------~~~~~~~f~~~~~~p~~ly--~D~~----~~lY~~lg~~~~~~~~~~~~~~ 67 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCG--------SPEGIEKFCELTGFPFPLY--VDPE----RKLYKALGLKRGLKWSLLPPAL 67 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcC--------CHHHHHHHHhccCCCCcEE--EeCc----HHHHHHhCCccccccCCCchHH
Confidence 667788888889999999975 7767999999999999988 4432 12222222111
Q ss_pred ----------------CCcc-cccccccceEEEEcCCCCeEEecc
Q psy299 156 ----------------GGTL-VDAIKWNFTKFIVDKNGVPVERHA 183 (240)
Q Consensus 156 ----------------~~~~-~~~v~~~P~~~lID~~G~Iv~~~~ 183 (240)
.+.. .+.+....-+||+|++|+|++.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG~fv~d~~g~v~~~hr 112 (115)
T PF13911_consen 68 WSGLSNIVQSAKNGGIPGNKDQGDGWQLGGTFVFDPGGKVLYEHR 112 (115)
T ss_pred HHHHHHHHHHHHHcCCCCcccCCCceecCeEEEEcCCCeEEEEEe
Confidence 1111 234444567899999999998764
No 164
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=96.90 E-value=0.0048 Score=46.52 Aligned_cols=63 Identities=11% Similarity=0.124 Sum_probs=39.2
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc--CcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcc---eeee
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR--GLRILAFPCNQFGGQEPGDADQICEFTKKKNVQ---FDLF 134 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~--~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~---fp~~ 134 (240)
+.+.+||.|+|+| |.|.. .|+.+++..+|... .+.+.-|.+|.+ .+ .+-++++++++++ ||.+
T Consensus 17 ~~~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~----~~--~~~~~L~~~y~I~~~gyPTl 84 (116)
T cd03007 17 KFKYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKDY----GE--KLNMELGERYKLDKESYPVI 84 (116)
T ss_pred cCCcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEecccc----cc--hhhHHHHHHhCCCcCCCCEE
Confidence 4578999999944 44443 47777777777543 366666776521 11 1235688888885 5544
No 165
>PLN02412 probable glutathione peroxidase
Probab=96.88 E-value=0.00096 Score=53.46 Aligned_cols=39 Identities=49% Similarity=0.814 Sum_probs=34.7
Q ss_pred CCCCcceeEEEEcCCCCeeeeccCCCCccchhhhhhhcC
Q psy299 202 SAIKWNFTKFIVDKNGAPVERHAANASPASLIPNIEKYL 240 (240)
Q Consensus 202 ~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (240)
..|.|++.+||||++|+++++|.....++++...|+++|
T Consensus 126 ~~v~~~p~tflId~~G~vv~~~~g~~~~~~l~~~i~~~l 164 (167)
T PLN02412 126 DAIKWNFTKFLVSKEGKVVQRYAPTTSPLKIEKDIQNLL 164 (167)
T ss_pred CCcCCCCeeEEECCCCcEEEEECCCCCHHHHHHHHHHHH
Confidence 358999999999999999999999999888888887754
No 166
>KOG1731|consensus
Probab=96.78 E-value=0.00066 Score=63.26 Aligned_cols=60 Identities=12% Similarity=0.216 Sum_probs=47.9
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc-C-cEEEEeecCCCCCCCCCCHHHHHHHHHhcCcce-eee
Q psy299 66 HVLVIVNVASRCGYTGKHYKELVELDEKFRDR-G-LRILAFPCNQFGGQEPGDADQICEFTKKKNVQF-DLF 134 (240)
Q Consensus 66 k~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~-~-v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~f-p~~ 134 (240)
+.-||.|+++||+.|+...|..+++.+.+..- + +.|.+|.+- .+.-.+.+.++++++ |.+
T Consensus 58 ~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA---------~~~N~~lCRef~V~~~Ptl 120 (606)
T KOG1731|consen 58 KAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCA---------DEENVKLCREFSVSGYPTL 120 (606)
T ss_pred hhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeecc---------chhhhhhHhhcCCCCCcee
Confidence 56789999999999999999999999998875 3 555567664 355677888888864 766
No 167
>KOG1651|consensus
Probab=96.71 E-value=0.002 Score=51.10 Aligned_cols=99 Identities=30% Similarity=0.457 Sum_probs=64.6
Q ss_pred EEEEEEecCC----CCCcHHHHHHHHHHHHHHhhcCcEEEE-eecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCC
Q psy299 67 VLVIVNVASR----CGYTGKHYKELVELDEKFRDRGLRILA-FPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNG 141 (240)
Q Consensus 67 ~vlv~F~atw----Cp~C~~~~~~L~~l~~~~~~~~v~vi~-Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~ 141 (240)
-.++.|-..- =|.|-.++..... .+++. ++.+.. |.++ | +...-+-+|++....- ++-
T Consensus 68 l~ILaFPCNQFg~QEp~~n~Ei~~f~~--~r~~~-~f~if~KidVN---G---~~~~PlykfLK~~~~~-~lg------- 130 (171)
T KOG1651|consen 68 LEILAFPCNQFGNQEPGSNEEILNFVK--VRYGA-EFPIFQKIDVN---G---DNADPLYKFLKKVKGG-PLG------- 130 (171)
T ss_pred eEEEEeccccccCcCCCCcHHHHHHHH--hccCC-CCccEeEEecC---C---CCCchHHHHHhhcCCC-ccc-------
Confidence 4677774221 1456656555444 44444 355543 4444 1 2455666676654422 111
Q ss_pred CCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhccc
Q psy299 142 DNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRT 201 (240)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~ 201 (240)
. .|.|+.+.||||++|+++.||.+..++..+..+|.++|+.
T Consensus 131 ~-------------------~IkWNF~KFLVd~~G~vv~Ry~ptt~p~~~~~dIe~lL~~ 171 (171)
T KOG1651|consen 131 D-------------------DIKWNFTKFLVDKDGHVVKRFSPTTSPLDIEKDIEKLLAQ 171 (171)
T ss_pred c-------------------cceeeeEEEeECCCCcEEEeeCCCCCccccchhHHHHhcC
Confidence 0 5888999999999999999999999999999999998863
No 168
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.61 E-value=0.0071 Score=45.78 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=32.4
Q ss_pred CCCcEEEEEEecC-------CCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 63 YKGHVLVIVNVAS-------RCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 63 ~~gk~vlv~F~at-------wCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
-.|++++|.|.++ |||.|....|.+++......+ +..+|-+.+.
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~-~~~lv~v~VG 67 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPE-NARLVYVEVG 67 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-ST-TEEEEEEE--
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCC-CceEEEEEcC
Confidence 4567888888754 999999999999999988554 5777777653
No 169
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=96.58 E-value=0.0051 Score=41.88 Aligned_cols=32 Identities=22% Similarity=0.343 Sum_probs=23.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++.||++|||+|+...+.|.++ ++.+-.+.++
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-------~~~~~~idi~ 33 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-------GAAYEWVDIE 33 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-------CCceEEEeCc
Confidence 5789999999999988876543 4444455544
No 170
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.49 E-value=0.004 Score=50.74 Aligned_cols=40 Identities=30% Similarity=0.694 Sum_probs=36.6
Q ss_pred ccccccceEEEEcCCCCeEEeccCCCCccc--hHHHHHHhcc
Q psy299 161 DAIKWNFTKFIVDKNGVPVERHAANASPAS--LIPHIEILGR 200 (240)
Q Consensus 161 ~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~--l~~~L~~ll~ 200 (240)
..|+|+.+.||||++|+++.++.+...+.+ |+++|+++|+
T Consensus 141 ~~i~WNF~KFLv~~~G~vv~r~~~~~~p~~~~i~~~i~~~l~ 182 (183)
T PRK10606 141 DDILWNFEKFLVGRDGQVIQRFSPDMTPEDPIVMESIKLALA 182 (183)
T ss_pred CcccccCEEEEECCCCcEEEEECCCCCCCHHHHHHHHHHHhc
Confidence 379999999999999999999999998887 9999999884
No 171
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=96.41 E-value=0.0077 Score=48.06 Aligned_cols=82 Identities=10% Similarity=0.101 Sum_probs=39.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHH-H--HHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKE-L--VELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVN 140 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~-L--~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~ 140 (240)
.+|+++|++.++||.-|+.+... + .++.+.+.+ .+|.|-+|. +....+......+
T Consensus 36 e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~---~FI~VkvDr------ee~Pdid~~y~~~------------- 93 (163)
T PF03190_consen 36 ENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNR---NFIPVKVDR------EERPDIDKIYMNA------------- 93 (163)
T ss_dssp HT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHH---H-EEEEEET------TT-HHHHHHHHHH-------------
T ss_pred cCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhC---CEEEEEecc------ccCccHHHHHHHH-------------
Confidence 47999999999999999976431 1 122222222 356666552 2333343332210
Q ss_pred CCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEecc
Q psy299 141 GDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHA 183 (240)
Q Consensus 141 ~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~ 183 (240)
.+.+. +..+.|.+++++++|+.++...
T Consensus 94 -------~~~~~---------~~gGwPl~vfltPdg~p~~~~t 120 (163)
T PF03190_consen 94 -------VQAMS---------GSGGWPLTVFLTPDGKPFFGGT 120 (163)
T ss_dssp -------HHHHH---------S---SSEEEEE-TTS-EEEEES
T ss_pred -------HHHhc---------CCCCCCceEEECCCCCeeeeee
Confidence 01110 2234589999999999988543
No 172
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.39 E-value=0.0064 Score=42.18 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=27.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++.|+++|||+|....+.|.++. ... .+.++-|..+
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~-~~~~~~v~~~ 36 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKP-AYEVVELDQL 36 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCC-CCEEEEeeCC
Confidence 46789999999999999998876 222 2677777644
No 173
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=96.38 E-value=0.017 Score=45.98 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=34.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEee
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs 105 (240)
.+++.|+.|+...||+|...-+.+..+.+++.+ ++.+.-+.
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~-~v~~~~~~ 54 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPK-DVKFEKVP 54 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCC-CceEEEcC
Confidence 678999999999999999999999999999855 35554433
No 174
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=96.35 E-value=0.0031 Score=49.46 Aligned_cols=34 Identities=47% Similarity=0.877 Sum_probs=29.3
Q ss_pred CCCCcceeEEEEcCCCCeeeeccCCCCccchhhh
Q psy299 202 SAIKWNFTKFIVDKNGAPVERHAANASPASLIPN 235 (240)
Q Consensus 202 ~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 235 (240)
..+.|++++||||++|+++++|.....++++.+.
T Consensus 118 ~~~~~~~ttflId~~G~i~~~~~G~~~~~~l~~~ 151 (152)
T cd00340 118 KDIKWNFTKFLVDRDGEVVKRFAPTTDPEELEKD 151 (152)
T ss_pred CccccccEEEEECCCCcEEEEECCCCCHHHHHhc
Confidence 5689999999999999999999998877766544
No 175
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=96.30 E-value=0.037 Score=47.38 Aligned_cols=30 Identities=13% Similarity=0.274 Sum_probs=25.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHH
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEK 93 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~ 93 (240)
.++.+++.|.-..||+|++....+..+.+.
T Consensus 116 ~ak~~I~vFtDp~CpyC~kl~~~l~~~~~~ 145 (251)
T PRK11657 116 DAPRIVYVFADPNCPYCKQFWQQARPWVDS 145 (251)
T ss_pred CCCeEEEEEECCCChhHHHHHHHHHHHhhc
Confidence 568899999999999999999988877654
No 176
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.28 E-value=0.014 Score=41.01 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=29.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++.|..+|||.|....+.|+++..++. ++.+.-+.++
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~~--~i~~~~idi~ 39 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEERD--DFDYRYVDIH 39 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhccccc--CCcEEEEECC
Confidence 677889999999999999999988763 5666666554
No 177
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=96.21 E-value=0.06 Score=41.50 Aligned_cols=82 Identities=12% Similarity=-0.035 Sum_probs=59.1
Q ss_pred CCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcC
Q psy299 77 CGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQG 156 (240)
Q Consensus 77 Cp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~ 156 (240)
+|-+.-..=.|.++.++|.+.++.++.|.+|. + .+.+.++|
T Consensus 48 ~~E~~D~avvleELa~e~~~~~v~~akVDiD~-------~----~~LA~~fg---------------------------- 88 (132)
T PRK11509 48 TPEVSDNPVMIGELLREFPDYTWQVAIADLEQ-------S----EAIGDRFG---------------------------- 88 (132)
T ss_pred CCccccHHHHHHHHHHHhcCCceEEEEEECCC-------C----HHHHHHcC----------------------------
Confidence 56666666778888888865458888887661 1 22333333
Q ss_pred CcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCC
Q psy299 157 GTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAI 204 (240)
Q Consensus 157 ~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i 204 (240)
+..+|+.+++ ++|+++.+..|..+.+++.+.|+++|+....
T Consensus 89 ------V~siPTLl~F-kdGk~v~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 89 ------VFRFPATLVF-TGGNYRGVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred ------CccCCEEEEE-ECCEEEEEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 4445775555 9999999999988989999999999987654
No 178
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.21 E-value=0.085 Score=43.83 Aligned_cols=81 Identities=12% Similarity=0.240 Sum_probs=62.8
Q ss_pred CeEeecCCCCcccCCC-CCCcEEEEE--E-ecC----CCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHH
Q psy299 47 DFTVKNIKGEDVPLST-YKGHVLVIV--N-VAS----RCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDAD 118 (240)
Q Consensus 47 ~f~l~d~~G~~v~ls~-~~gk~vlv~--F-~at----wCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e 118 (240)
+..+...+| +.+|++ |.|+-.||. | +++ .||.|...+.++.-....+...++.+++||-- ..+
T Consensus 54 ~Y~Fe~~~G-~~sLadLF~grsqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRA--------Pl~ 124 (247)
T COG4312 54 DYVFETENG-KKSLADLFGGRSQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRA--------PLE 124 (247)
T ss_pred eeEeecCCc-chhHHHHhCCCceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecC--------cHH
Confidence 344445677 568888 467644443 3 233 59999999999998899999889999999853 679
Q ss_pred HHHHHHHhcCcceeeeEe
Q psy299 119 QICEFTKKKNVQFDLFEK 136 (240)
Q Consensus 119 ~~~~~~~~~~~~fp~~~~ 136 (240)
++..+-++-|-+||+++.
T Consensus 125 ~l~~~k~rmGW~f~w~Ss 142 (247)
T COG4312 125 ELVAYKRRMGWQFPWVSS 142 (247)
T ss_pred HHHHHHHhcCCcceeEec
Confidence 999999999999999954
No 179
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.17 E-value=0.037 Score=46.78 Aligned_cols=37 Identities=16% Similarity=0.373 Sum_probs=29.2
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEe
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAF 104 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~V 104 (240)
.|+.+++.|.-..||+|++..+.+.++.+ .++.|..+
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~----~~v~v~~~ 142 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNA----LGITVRYL 142 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhc----CCeEEEEE
Confidence 47899999999999999999888877643 35666554
No 180
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=96.09 E-value=0.023 Score=39.16 Aligned_cols=31 Identities=19% Similarity=0.322 Sum_probs=22.2
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEe
Q psy299 73 VASRCGYTGKHYKELVELDEKFRDRGLRILAF 104 (240)
Q Consensus 73 ~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~V 104 (240)
.+++||.|......++++...+. ..+.++-+
T Consensus 6 ~~~~C~~C~~~~~~~~~~~~~~~-i~~ei~~~ 36 (76)
T PF13192_consen 6 FSPGCPYCPELVQLLKEAAEELG-IEVEIIDI 36 (76)
T ss_dssp ECSSCTTHHHHHHHHHHHHHHTT-EEEEEEET
T ss_pred eCCCCCCcHHHHHHHHHHHHhcC-CeEEEEEc
Confidence 56779999988888888888774 33444443
No 181
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=95.58 E-value=0.14 Score=38.54 Aligned_cols=106 Identities=20% Similarity=0.317 Sum_probs=64.0
Q ss_pred cCCCCCCc--EEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCC-CCCCHHHHHHHHHhcCcceeeeE
Q psy299 59 PLSTYKGH--VLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQ-EPGDADQICEFTKKKNVQFDLFE 135 (240)
Q Consensus 59 ~ls~~~gk--~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~-~~~~~e~~~~~~~~~~~~fp~~~ 135 (240)
+|++++++ ++||+--....+.=..++..|++....+.++.+.++.+.-+..... ..-+....
T Consensus 2 ~L~~~~w~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~~~~~~~~~~~~~~~~--------------- 66 (118)
T PF13778_consen 2 PLDQFRWKNRLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITGDGARSPGKPLSPEDI--------------- 66 (118)
T ss_pred ChhHhcCcCceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeCCccccccCcCCHHHH---------------
Confidence 35666664 4433332334455677788888888889999999988843211000 00111222
Q ss_pred eeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHH
Q psy299 136 KINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEI 197 (240)
Q Consensus 136 ~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ 197 (240)
..+.+.++...+ .++.+||+++|.+..++....+.++|.+.|+.
T Consensus 67 ---------~~lr~~l~~~~~---------~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 67 ---------QALRKRLRIPPG---------GFTVVLIGKDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred ---------HHHHHHhCCCCC---------ceEEEEEeCCCcEEEecCCCCCHHHHHHHHhC
Confidence 223333322111 13669999999999999888888888888875
No 182
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=95.56 E-value=0.045 Score=45.30 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=31.8
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHH---HHHHHHHhhcCcEEEEeec
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKEL---VELDEKFRDRGLRILAFPC 106 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L---~~l~~~~~~~~v~vi~Vs~ 106 (240)
.|++.++.|+.-.||+|...-+.+ ..+.+.+.+ ++.++-+.+
T Consensus 36 ~~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~-~v~~~~~~~ 80 (207)
T PRK10954 36 AGEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPE-GTKMTKYHV 80 (207)
T ss_pred CCCCeEEEEeCCCCccHHHhcccccchHHHHHhCCC-CCeEEEecc
Confidence 478889999999999999987765 777888765 455554433
No 183
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=95.36 E-value=0.03 Score=43.05 Aligned_cols=42 Identities=29% Similarity=0.406 Sum_probs=33.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEee
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs 105 (240)
.++++|+.|+..+||+|....+.+.++..++.+..+.+..+.
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~p 45 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEFP 45 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeCC
Confidence 478999999999999999999999998887754334444444
No 184
>KOG4277|consensus
Probab=95.08 E-value=0.031 Score=48.58 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=31.3
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEE
Q psy299 66 HVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRI 101 (240)
Q Consensus 66 k~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~v 101 (240)
...+|.|+|+||.+|++.-|...+.--++++.|..|
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~Pi 79 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPI 79 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCCce
Confidence 477899999999999999999999888888876555
No 185
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=95.06 E-value=0.1 Score=42.65 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 60 LSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 60 ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
+..-.+++.++.|....||+|+...+.+.+ ...+-.+.++.+.+.
T Consensus 72 ~g~~~~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~ 116 (197)
T cd03020 72 YGKGNGKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPIL 116 (197)
T ss_pred EcCCCCCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcC
Confidence 333347899999999999999999998877 112223555555543
No 186
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=94.84 E-value=0.1 Score=33.97 Aligned_cols=32 Identities=22% Similarity=0.386 Sum_probs=23.7
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++.|..++||.|......| ++.|+.+-.+.++
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~ 32 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVD 32 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGG
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccc
Confidence 4678899999999877666 3456777666665
No 187
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=94.84 E-value=0.14 Score=33.93 Aligned_cols=32 Identities=25% Similarity=0.359 Sum_probs=22.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++.|..+|||.|......|.+ .++.+..+.+|
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~ 33 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVD 33 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCC
Confidence 467889999999986666554 35666666655
No 188
>KOG3425|consensus
Probab=94.68 E-value=0.055 Score=40.68 Aligned_cols=43 Identities=9% Similarity=0.116 Sum_probs=33.3
Q ss_pred CCcEEEEEEec--------CCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 64 KGHVLVIVNVA--------SRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 64 ~gk~vlv~F~a--------twCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
+|+-+++.|.+ +|||.|.+..|.+.+..+.... ++.+|-+-+.
T Consensus 24 n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~-~~~~v~v~VG 74 (128)
T KOG3425|consen 24 NGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPE-DVHFVHVYVG 74 (128)
T ss_pred CCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCC-ceEEEEEEec
Confidence 56667888864 5899999999999998886555 4777776543
No 189
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.67 E-value=0.15 Score=34.45 Aligned_cols=46 Identities=17% Similarity=0.278 Sum_probs=30.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKN 128 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~ 128 (240)
++.|..++||.|......|++ .|+.+-.+.++ .+++..+++.+..+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~-------~~~~~~~~~~~~~~ 47 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVD-------GDPALREEMINRSG 47 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECC-------CCHHHHHHHHHHhC
Confidence 467888999999987777764 45666666655 24555555544433
No 190
>KOG0191|consensus
Probab=94.26 E-value=0.14 Score=46.43 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=35.6
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhh-cCcEEEEeec
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRD-RGLRILAFPC 106 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~-~~v~vi~Vs~ 106 (240)
....||.|+++||++|+...|.+.++...++. .++.+..+.+
T Consensus 162 ~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~ 204 (383)
T KOG0191|consen 162 DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDA 204 (383)
T ss_pred CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeecc
Confidence 46788999999999999999999999999985 4677777753
No 191
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=94.11 E-value=0.17 Score=35.75 Aligned_cols=37 Identities=11% Similarity=0.096 Sum_probs=26.2
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++.|..+|||+|......|+++..++. ++.+.-+.++
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~--~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA--DFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC--CCcEEEEECC
Confidence 567778999999999888888765433 3555555443
No 192
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=93.98 E-value=0.19 Score=32.98 Aligned_cols=32 Identities=22% Similarity=0.285 Sum_probs=22.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++.|..+|||.|+.....|++.. +.+.-+.++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~-------i~~~~~di~ 33 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG-------IEFEEIDIL 33 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-------CcEEEEECC
Confidence 46788999999998888777643 555555544
No 193
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=93.90 E-value=0.051 Score=44.32 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=36.0
Q ss_pred EEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeE-EEEcCCCCeeeeccCCCCccch---hhhhhh
Q psy299 169 KFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTK-FIVDKNGAPVERHAANASPASL---IPNIEK 238 (240)
Q Consensus 169 ~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~-~~i~~~~~~~~~~~~~~~~~~~---~~~~~~ 238 (240)
.+++|++|.+...+.-...| ++ ||||++|+++++|.-...++++ ++.|++
T Consensus 128 ~vllD~~g~v~~~~gv~~~P--------------------~T~fVIDk~GkVv~~~~G~l~~ee~e~~~~li~~ 181 (184)
T TIGR01626 128 QVVLDDKGAVKNAWQLNSED--------------------SAIIVLDKTGKVKFVKEGALSDSDIQTVISLVNG 181 (184)
T ss_pred eEEECCcchHHHhcCCCCCC--------------------ceEEEECCCCcEEEEEeCCCCHHHHHHHHHHHHH
Confidence 58999999877666433333 55 9999999999999887766543 444443
No 194
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=93.78 E-value=0.15 Score=39.62 Aligned_cols=48 Identities=17% Similarity=0.214 Sum_probs=37.6
Q ss_pred ccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHH--hhcCcEEEEeec
Q psy299 58 VPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKF--RDRGLRILAFPC 106 (240)
Q Consensus 58 v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~--~~~~v~vi~Vs~ 106 (240)
+.+.+-.++++|+.|+...||+|....+.+.++.+++ .+ .+.++...+
T Consensus 5 ~~~G~~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~-~v~~~~~~~ 54 (162)
T PF13462_consen 5 PTIGNPDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPG-KVKFVFRPV 54 (162)
T ss_dssp EEES-TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTT-TEEEEEEES
T ss_pred CeecCCCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCC-ceEEEEEEc
Confidence 4455667899999999999999999999999999998 43 477766654
No 195
>PRK10329 glutaredoxin-like protein; Provisional
Probab=93.38 E-value=0.35 Score=33.82 Aligned_cols=32 Identities=9% Similarity=0.240 Sum_probs=23.7
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
+..|..+|||.|......|. ++|+.+-.+.++
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~-------~~gI~~~~idi~ 34 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAME-------SRGFDFEMINVD 34 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHH-------HCCCceEEEECC
Confidence 55677899999998766663 357777777665
No 196
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.05 E-value=0.29 Score=33.54 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=17.1
Q ss_pred EEEEecCCCCCcHHHHHHHHH
Q psy299 69 VIVNVASRCGYTGKHYKELVE 89 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~ 89 (240)
+..|+.+|||.|......|++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~ 21 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSS 21 (79)
T ss_pred CEEEecCCChhHHHHHHHHHH
Confidence 356789999999988887764
No 197
>KOG4498|consensus
Probab=92.94 E-value=0.58 Score=38.07 Aligned_cols=55 Identities=20% Similarity=0.374 Sum_probs=45.2
Q ss_pred ecCCCCcccCCCC-CCcEEEEEE-ecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEee
Q psy299 51 KNIKGEDVPLSTY-KGHVLVIVN-VASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105 (240)
Q Consensus 51 ~d~~G~~v~ls~~-~gk~vlv~F-~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs 105 (240)
.+..|+.+++.++ +.+..+|.| .-..|-.|+.+...|..+..-++..|+.+|+|-
T Consensus 35 l~~rg~~vp~~~L~~~~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg 91 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKERSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVG 91 (197)
T ss_pred hhhcCceeehHHhhhcCCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEe
Confidence 5778999999886 444444444 588999999999999999888888899999995
No 198
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.16 Score=40.25 Aligned_cols=63 Identities=13% Similarity=0.160 Sum_probs=38.6
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCcc----chhhhhhh
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPA----SLIPNIEK 238 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~----~~~~~~~~ 238 (240)
+...|-|+++++...|.-.......-.... ...+ .+||||++|++++-+ ++..++ +++++|++
T Consensus 88 ~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~--~~~R------~TfvId~dG~I~~~~-~~v~~~~h~~~vl~~l~~ 154 (157)
T COG1225 88 TFPLLSDEDGEVAEAYGVWGEKKMYGKEYM--GIER------STFVIDPDGKIRYVW-RKVKVKGHADEVLAALKK 154 (157)
T ss_pred CceeeECCcHHHHHHhCcccccccCccccc--cccc------eEEEECCCCeEEEEe-cCCCCcccHHHHHHHHHH
Confidence 455899999997776643221111111000 1122 799999999999999 666664 56665554
No 199
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.51 E-value=0.56 Score=32.70 Aligned_cols=53 Identities=13% Similarity=0.271 Sum_probs=32.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcC--cceeee
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKN--VQFDLF 134 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~--~~fp~~ 134 (240)
++.|--++||+|.+.-..|. ++|+.+.-+.++. +..+..++++++.+ .++|++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~------~~~~~~~~~~~~~~g~~tvP~I 57 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDD------DEPEEAREMVKRGKGQRTVPQI 57 (80)
T ss_pred EEEEECCCCchHHHHHHHHH-------HcCCCcEEEEecC------CcHHHHHHHHHHhCCCCCcCEE
Confidence 45666789999997766665 4566666655542 23356666666553 344554
No 200
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=92.39 E-value=0.68 Score=31.22 Aligned_cols=32 Identities=19% Similarity=0.171 Sum_probs=22.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++.|..++||.|+.....|++ .|+.+..+.++
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~-------~gi~~~~~di~ 34 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLRE-------KGLPYVEINID 34 (73)
T ss_pred EEEEecCCChhHHHHHHHHHH-------CCCceEEEECC
Confidence 345667999999988777765 45666666554
No 201
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=92.28 E-value=0.15 Score=40.83 Aligned_cols=50 Identities=24% Similarity=0.307 Sum_probs=36.6
Q ss_pred EEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCccchhhhhhhc
Q psy299 170 FIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPASLIPNIEKY 239 (240)
Q Consensus 170 ~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
++.|+++++...+.-...| ..|+||++|+++++|......+++.+-|+.+
T Consensus 121 v~~D~~~~~~~~~~v~~~P--------------------~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 121 ILIDPNGKLGLDLGVYGAP--------------------ETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred EEECCCCchHHhcCCeeCC--------------------eEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 5679988876655332222 6999999999999988776667777666654
No 202
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=92.27 E-value=0.32 Score=33.33 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=25.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++.|..+|||.|....+.|+++.. .+.++-+..+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~ 35 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQH 35 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCC
Confidence 467789999999988888877544 3556666544
No 203
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=92.19 E-value=0.13 Score=41.70 Aligned_cols=49 Identities=24% Similarity=0.373 Sum_probs=34.8
Q ss_pred EEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCccchhhhhhh
Q psy299 170 FIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPASLIPNIEK 238 (240)
Q Consensus 170 ~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (240)
++.|++|.+...+.-...| .+|+||++|+++++|.-...++++-+.|+.
T Consensus 126 ~~~D~~~~~~~~~gv~~~P--------------------~t~vid~~G~i~~~~~G~~~~~~l~~~i~~ 174 (185)
T PRK15412 126 SLFDGDGMLGLDLGVYGAP--------------------ETFLIDGNGIIRYRHAGDLNPRVWESEIKP 174 (185)
T ss_pred EEEcCCccHHHhcCCCcCC--------------------eEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence 4778888766544322223 799999999999999877777665555554
No 204
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.10 E-value=0.43 Score=32.90 Aligned_cols=35 Identities=23% Similarity=0.345 Sum_probs=25.4
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 66 HVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 66 k~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
+.-++.|..+|||.|......|++ .|+.+..+.++
T Consensus 7 ~~~V~ly~~~~Cp~C~~ak~~L~~-------~gi~y~~idi~ 41 (79)
T TIGR02190 7 PESVVVFTKPGCPFCAKAKATLKE-------KGYDFEEIPLG 41 (79)
T ss_pred CCCEEEEECCCCHhHHHHHHHHHH-------cCCCcEEEECC
Confidence 334678889999999988777753 46666666665
No 205
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=91.96 E-value=0.58 Score=31.56 Aligned_cols=31 Identities=19% Similarity=0.217 Sum_probs=22.9
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 70 IVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 70 v~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
..|..++||.|+.....|++ .|+.+-.+.++
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~~di~ 32 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE-------HGIAFEEINID 32 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------CCCceEEEECC
Confidence 46778999999988877764 46666666655
No 206
>KOG0914|consensus
Probab=91.88 E-value=0.17 Score=42.21 Aligned_cols=45 Identities=16% Similarity=0.062 Sum_probs=37.5
Q ss_pred CCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEee
Q psy299 61 STYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105 (240)
Q Consensus 61 s~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs 105 (240)
...+.++.||.|++.|.|-|...-|.+.++-.+|...++++=-|.
T Consensus 140 ~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvD 184 (265)
T KOG0914|consen 140 DRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVD 184 (265)
T ss_pred ccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCccccee
Confidence 334557899999999999999999999999999998777764453
No 207
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=91.67 E-value=0.71 Score=43.99 Aligned_cols=38 Identities=8% Similarity=0.021 Sum_probs=28.3
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEe
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAF 104 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~V 104 (240)
+..-+-.|..++||+|+.....++++..+.. ++..-.|
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i 513 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMI 513 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEE
Confidence 3445667789999999998888888888765 4555444
No 208
>PHA03050 glutaredoxin; Provisional
Probab=91.17 E-value=0.44 Score=35.29 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=17.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHH
Q psy299 69 VIVNVASRCGYTGKHYKELVEL 90 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l 90 (240)
++.|..+|||+|......|+++
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~ 36 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKF 36 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHc
Confidence 6778899999999877777664
No 209
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=91.16 E-value=0.8 Score=35.53 Aligned_cols=29 Identities=10% Similarity=0.130 Sum_probs=20.0
Q ss_pred eEEEEcCCCCeeeeccCCCCccchhhhhhh
Q psy299 209 TKFIVDKNGAPVERHAANASPASLIPNIEK 238 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (240)
..||||++|+++++|..- .|.+.++.+.+
T Consensus 122 ~~~lid~~G~i~~~~~g~-~~~~~~~~~~~ 150 (154)
T PRK09437 122 ISFLIDADGKIEHVFDKF-KTSNHHDVVLD 150 (154)
T ss_pred EEEEECCCCEEEEEEcCC-CcchhHHHHHH
Confidence 469999999999998753 33333444433
No 210
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=91.04 E-value=0.52 Score=36.15 Aligned_cols=51 Identities=20% Similarity=0.214 Sum_probs=31.5
Q ss_pred eEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCc
Q psy299 168 TKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASP 229 (240)
Q Consensus 168 ~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~ 229 (240)
..++.|+++.+...+.-......... +..+ ..||||++|++++++.....+
T Consensus 87 ~~~~~D~~~~~~~~~~~~~~~~~~~~-----~~~P------~~~lId~~G~V~~~~~g~~~~ 137 (146)
T PF08534_consen 87 FPVLSDPDGALAKALGVTIMEDPGNG-----FGIP------TTFLIDKDGKVVYRHVGPDPD 137 (146)
T ss_dssp SEEEEETTSHHHHHTTCEEECCTTTT-----SSSS------EEEEEETTSBEEEEEESSBTT
T ss_pred ceEEechHHHHHHHhCCccccccccC-----Ceec------EEEEEECCCEEEEEEeCCCCC
Confidence 44799998887776643200000000 1222 789999999999997665554
No 211
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=90.98 E-value=1.3 Score=38.23 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=33.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeec
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~ 106 (240)
++-+|||.||-+.++.|...-..|..++.+|.. ++|+-|..
T Consensus 145 ~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a 185 (265)
T PF02114_consen 145 KSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRA 185 (265)
T ss_dssp TT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEE
T ss_pred CCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEeh
Confidence 456899999999999999999999999999996 88888764
No 212
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=90.79 E-value=0.21 Score=39.83 Aligned_cols=58 Identities=10% Similarity=0.058 Sum_probs=37.5
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCC----CCccchhhhhhh
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAAN----ASPASLIPNIEK 238 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~ 238 (240)
|..++.|++|.+...+.-...... +..+ ..||||++|+++++|-.. -..+++++.|++
T Consensus 94 ~f~~l~D~~~~~~~~~gv~~~~~~--------~~~p------~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~ 155 (173)
T cd03015 94 NFPLLADPKKKISRDYGVLDEEEG--------VALR------GTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDA 155 (173)
T ss_pred ceeEEECCchhHHHHhCCccccCC--------ceee------EEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 455899999988766543222100 0111 789999999999998332 223678887765
No 213
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=90.65 E-value=1.5 Score=31.94 Aligned_cols=49 Identities=16% Similarity=0.218 Sum_probs=33.4
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCc
Q psy299 70 IVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNV 129 (240)
Q Consensus 70 v~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~ 129 (240)
..|..++|+.|+.....|++. +..+.++-|.- .+.+.++++++....+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~------~~~~~~~l~~~~~~~~~ 50 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLK------EPPTKEELKELLAKLGL 50 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeecc------CCCCHHHHHHHHHhcCC
Confidence 457789999999887666652 11244455542 34578999999888774
No 214
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=90.45 E-value=0.77 Score=33.34 Aligned_cols=21 Identities=19% Similarity=0.226 Sum_probs=16.1
Q ss_pred EEEEecCCCCCcHHHHHHHHH
Q psy299 69 VIVNVASRCGYTGKHYKELVE 89 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~ 89 (240)
++.|..+|||.|......|.+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~ 30 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLT 30 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHH
Confidence 567788999999977665544
No 215
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=90.42 E-value=1.1 Score=33.77 Aligned_cols=27 Identities=15% Similarity=0.201 Sum_probs=20.2
Q ss_pred eEEEEcCCCCeeeeccCCCCccchhhh
Q psy299 209 TKFIVDKNGAPVERHAANASPASLIPN 235 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~~~~~~~~~~~~ 235 (240)
..||||++|+++++|..-...+++-+.
T Consensus 112 ~~~lid~~G~v~~~~~g~~~~~~~~~~ 138 (140)
T cd03017 112 STFLIDPDGKIVKVWRKVKPKGHAEEV 138 (140)
T ss_pred eEEEECCCCEEEEEEecCCccchHHHH
Confidence 689999999999999666644444433
No 216
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=88.61 E-value=1.9 Score=30.54 Aligned_cols=37 Identities=27% Similarity=0.444 Sum_probs=22.0
Q ss_pred CCcEEEEEEec----CCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 64 KGHVLVIVNVA----SRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 64 ~gk~vlv~F~a----twCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
+.++++|+--. +|||.|......|.+. |+.+-.+.++
T Consensus 6 ~~~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-------~i~y~~idv~ 46 (90)
T cd03028 6 KENPVVLFMKGTPEEPRCGFSRKVVQILNQL-------GVDFGTFDIL 46 (90)
T ss_pred ccCCEEEEEcCCCCCCCCcHHHHHHHHHHHc-------CCCeEEEEcC
Confidence 34555555332 6999999776666553 4555555443
No 217
>PRK10638 glutaredoxin 3; Provisional
Probab=88.59 E-value=1.9 Score=29.81 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=22.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++.|..+|||.|+.....|++ .|+.+..+.+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~ 35 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPID 35 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECC
Confidence 456668999999987777764 35555555554
No 218
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=88.43 E-value=2.2 Score=30.73 Aligned_cols=36 Identities=14% Similarity=0.255 Sum_probs=22.6
Q ss_pred CcEEEEEEe----cCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 65 GHVLVIVNV----ASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 65 gk~vlv~F~----atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
.+.++|+-. ++|||+|......|++ .|+.+..+.++
T Consensus 11 ~~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~ 50 (97)
T TIGR00365 11 ENPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVL 50 (97)
T ss_pred cCCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECC
Confidence 345555554 3899999977666655 35556555544
No 219
>KOG0911|consensus
Probab=88.12 E-value=0.41 Score=40.00 Aligned_cols=42 Identities=21% Similarity=0.226 Sum_probs=33.6
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
+++.+++.||+.||.+|......+..+.+.. .++.++.+..+
T Consensus 16 ~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~ 57 (227)
T KOG0911|consen 16 KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAE 57 (227)
T ss_pred ccchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhh
Confidence 7889999999999999997777777766666 45777777554
No 220
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=88.05 E-value=0.44 Score=38.88 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=36.8
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCc----cchhhhhh
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASP----ASLIPNIE 237 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~ 237 (240)
|..++.|+++.+...+.-..+... +..+ ..||||++|++++.+..+..+ ++++..|+
T Consensus 93 ~fpllsD~~~~ia~~ygv~~~~~g--------~~~r------~tfIID~~G~I~~~~~~~~~~~~~~~eil~~l~ 153 (187)
T PRK10382 93 KYAMIGDPTGALTRNFDNMREDEG--------LADR------ATFVVDPQGIIQAIEVTAEGIGRDASDLLRKIK 153 (187)
T ss_pred ceeEEEcCchHHHHHcCCCcccCC--------ceee------EEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 455899999988776653211110 1123 789999999999997655443 55555554
No 221
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=87.97 E-value=1.2 Score=32.91 Aligned_cols=51 Identities=20% Similarity=0.276 Sum_probs=34.6
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcce
Q psy299 70 IVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQF 131 (240)
Q Consensus 70 v~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~f 131 (240)
..|..++|+.|+.....|++ +|+.+..+.+. .++.+.+++.++.+..+.++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~~~~~~~~~~ 52 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIV----EEPPSKEELKKWLEKSGLPL 52 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCceEEeccc----CCcccHHHHHHHHHHcCCCH
Confidence 35678999999988776665 35555444433 23457888999888877543
No 222
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=87.61 E-value=2.4 Score=28.35 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=22.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++.|..+|||.|......|++ .|+.+..+.++
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~-------~~i~~~~~~v~ 34 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQE-------NGISYEEIPLG 34 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 566778999999988666663 45666666554
No 223
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=87.29 E-value=1.3 Score=33.10 Aligned_cols=51 Identities=10% Similarity=0.094 Sum_probs=35.8
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcce
Q psy299 70 IVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQF 131 (240)
Q Consensus 70 v~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~f 131 (240)
..|+.++|+.|+.....|++ .|+.+..+.+. .++.+.+++.++++..+..+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~----~~~~~~~el~~l~~~~~~~~ 52 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIG----EDGPTREELLDILSLLEDGI 52 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecC----CChhhHHHHHHHHHHcCCCH
Confidence 35678999999988877766 35555555443 33457888999998887544
No 224
>PRK10026 arsenate reductase; Provisional
Probab=87.21 E-value=9.4 Score=29.70 Aligned_cols=50 Identities=10% Similarity=0.268 Sum_probs=35.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCc
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNV 129 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~ 129 (240)
+..|+.+.|..|+..+.-|++. +..+.++-+--+ +-+.++++++++..+.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~~-----gi~~~~~d~~~~------ppt~~eL~~~l~~~g~ 53 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRNS-----GTEPTIIHYLET------PPTRDELVKLIADMGI 53 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCcEEEeeeCC------CcCHHHHHHHHHhCCC
Confidence 4466789999999888777764 223555555433 3489999999998885
No 225
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=87.20 E-value=0.98 Score=33.27 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=28.6
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeee
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVER 222 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~ 222 (240)
|..++.|+++.+...+...... .....=..||||++|+++++
T Consensus 83 ~~~~~~D~~~~~~~~~~~~~~~--------------~~~~~p~~~lid~~g~I~~~ 124 (124)
T PF00578_consen 83 PFPVLSDPDGELAKAFGIEDEK--------------DTLALPAVFLIDPDGKIRYA 124 (124)
T ss_dssp SSEEEEETTSHHHHHTTCEETT--------------TSEESEEEEEEETTSBEEEE
T ss_pred ccccccCcchHHHHHcCCcccc--------------CCceEeEEEEECCCCEEEeC
Confidence 4558999999887766433111 11222389999999999985
No 226
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=86.89 E-value=0.6 Score=37.16 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=21.5
Q ss_pred eEEEEcCCCCeeeecc-CCCC----ccchhhhhhh
Q psy299 209 TKFIVDKNGAPVERHA-ANAS----PASLIPNIEK 238 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~-~~~~----~~~~~~~~~~ 238 (240)
..||||++|++++.+- ++.- .++++.+|++
T Consensus 133 ~tfvId~~G~I~~~~~~~~~~~~~~~~~~l~~l~~ 167 (167)
T PRK00522 133 AVFVLDENNKVVYSELVPEITNEPDYDAALAALKA 167 (167)
T ss_pred EEEEECCCCeEEEEEECCCcCCCCCHHHHHHHhhC
Confidence 7999999999999973 3322 2666666653
No 227
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=86.87 E-value=1.3 Score=35.51 Aligned_cols=40 Identities=15% Similarity=0.188 Sum_probs=31.3
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 68 LVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 68 vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
+|..|+-.-||.|-...+.|.++.+.+.+-.+....+++.
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~ 40 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLR 40 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEeccccc
Confidence 3567778899999999999999999995444555666554
No 228
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=86.69 E-value=3.9 Score=30.16 Aligned_cols=58 Identities=14% Similarity=0.173 Sum_probs=35.8
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCc
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNV 129 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~ 129 (240)
+.++++|+=-.|.||...+.+.++++..+...+. +.++.|-+= ..+..=.+.++++|+
T Consensus 18 ~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~-~~~y~l~v~-------~~R~vSn~IAe~~~V 75 (105)
T PF11009_consen 18 KEKPVLIFKHSTRCPISAMALREFEKFWEESPDE-IPVYYLDVI-------EYRPVSNAIAEDFGV 75 (105)
T ss_dssp --SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT-----EEEEEGG-------GGHHHHHHHHHHHT-
T ss_pred ccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCcc-ceEEEEEEE-------eCchhHHHHHHHhCC
Confidence 4678888888999999999999999999988775 666666432 344444445555554
No 229
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=86.43 E-value=2.5 Score=32.28 Aligned_cols=93 Identities=11% Similarity=0.034 Sum_probs=59.6
Q ss_pred cEEEEEEecC--CCC-CcHH-HHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCC
Q psy299 66 HVLVIVNVAS--RCG-YTGK-HYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNG 141 (240)
Q Consensus 66 k~vlv~F~at--wCp-~C~~-~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~ 141 (240)
+.-+|.|.-. .|. -+.. ....|.++.++++++.+.++.+..+. ... +.+.+|+.-
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--------~~~---~~~~fgl~~---------- 79 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--------QLD---LEEALNIGG---------- 79 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--------cHH---HHHHcCCCc----------
Confidence 4556666432 343 3443 37889999999998768888876541 111 334344321
Q ss_pred CCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEe-ccCCCCccchHHHHHHhcccC
Q psy299 142 DNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVER-HAANASPASLIPHIEILGRTS 202 (240)
Q Consensus 142 ~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~-~~~~~~~~~l~~~L~~ll~~~ 202 (240)
...|..++++.++. ++. +.+..+.+.+.+.++.+++++
T Consensus 80 ----------------------~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 80 ----------------------FGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred ----------------------cCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCC
Confidence 01267788888775 554 566778888999999999886
No 230
>KOG3414|consensus
Probab=85.65 E-value=2.7 Score=32.08 Aligned_cols=56 Identities=16% Similarity=0.134 Sum_probs=42.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcce
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQF 131 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~f 131 (240)
..|.++|-|.-.|.|.|...=..|.+.....++ +.+|.+. +..+...|.+-+++..
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsn--fa~Iylv----------dideV~~~~~~~~l~~ 77 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSN--FAVIYLV----------DIDEVPDFVKMYELYD 77 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhh--ceEEEEE----------ecchhhhhhhhhcccC
Confidence 358999999999999999998999999888874 6666654 3445666666555544
No 231
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=84.94 E-value=1.9 Score=32.36 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=40.9
Q ss_pred chHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCccchhhhhhhc
Q psy299 190 SLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPASLIPNIEKY 239 (240)
Q Consensus 190 ~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
.....|.+.+.-+ .-.|.-.||+|.|++-.|+...+.++++...|-+|
T Consensus 64 ~~~~~lr~~l~~~--~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~M 111 (118)
T PF13778_consen 64 EDIQALRKRLRIP--PGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDAM 111 (118)
T ss_pred HHHHHHHHHhCCC--CCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhCC
Confidence 4677777777655 55699999999999999999999999999998765
No 232
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=84.78 E-value=1.1 Score=35.34 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=35.9
Q ss_pred eEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCccchhhhhh
Q psy299 168 TKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPASLIPNIE 237 (240)
Q Consensus 168 ~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 237 (240)
..+++|.++.+...+.-..-| ..|+||++|+++..+.....++++.+.++
T Consensus 120 ~~~~~d~~~~~~~~~~v~~~P--------------------~~~lid~~g~i~~~~~g~~~~~~l~~~l~ 169 (173)
T PRK03147 120 FPVAIDKGRQVIDAYGVGPLP--------------------TTFLIDKDGKVVKVITGEMTEEQLEEYLE 169 (173)
T ss_pred ceEEECCcchHHHHcCCCCcC--------------------eEEEECCCCcEEEEEeCCCCHHHHHHHHH
Confidence 447788888776655432222 68999999999999877777777666654
No 233
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=84.68 E-value=0.75 Score=36.46 Aligned_cols=51 Identities=18% Similarity=0.312 Sum_probs=32.0
Q ss_pred eEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCC---------CCccchhhhhhh
Q psy299 168 TKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAAN---------ASPASLIPNIEK 238 (240)
Q Consensus 168 ~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~---------~~~~~~~~~~~~ 238 (240)
..++.|+++.+...+.-...| ..||||++|+++++...+ ....++..+|++
T Consensus 91 ~~~l~D~~~~~~~~~~v~~~P--------------------~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 150 (171)
T cd02969 91 FPYLLDETQEVAKAYGAACTP--------------------DFFLFDPDGKLVYRGRIDDSRPGNDPPVTGRDLRAALDA 150 (171)
T ss_pred ceEEECCchHHHHHcCCCcCC--------------------cEEEECCCCeEEEeecccCCcccccccccHHHHHHHHHH
Confidence 448889887655444321111 479999999999885322 223556666665
No 234
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=84.63 E-value=2.5 Score=31.04 Aligned_cols=49 Identities=14% Similarity=0.051 Sum_probs=33.9
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCc
Q psy299 70 IVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNV 129 (240)
Q Consensus 70 v~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~ 129 (240)
..|..++|+.|+.....|.+. +..+.++-+.-+ +-+.++++.+++..|+
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~------p~s~~eL~~~l~~~g~ 50 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKD------GLDAATLERWLAKVGW 50 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccC------CCCHHHHHHHHHHhCh
Confidence 467789999999877766653 223445555433 3589999999988773
No 235
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=84.47 E-value=3.1 Score=30.87 Aligned_cols=52 Identities=12% Similarity=0.098 Sum_probs=35.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcce
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQF 131 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~f 131 (240)
+..|..++|+.|+.....|++ +|+.+-.+.+. ..+.+.++++++++..+..+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~-------~gi~~~~idi~----~~~~~~~el~~~~~~~~~~~ 53 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEE-------HQIPFEERNLF----KQPLTKEELKEILSLTENGV 53 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCceEEEecC----CCcchHHHHHHHHHHhcCCH
Confidence 345678999999987766665 35555555443 23457899999999875543
No 236
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=84.36 E-value=1.3 Score=30.51 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=28.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++.|+...||.|....+.+.++.....+ ++.+.-..+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~-~~~~~~~~~~ 38 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDG-GVRVVYRPFP 38 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCC-cEEEEEeccc
Confidence 3578889999999999999999855444 4666555443
No 237
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=84.03 E-value=2.5 Score=32.38 Aligned_cols=51 Identities=16% Similarity=0.102 Sum_probs=34.2
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcc
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQ 130 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~ 130 (240)
+..|..++|+.|+.....|.+ +|+.+..+.+. .++.+.+++.++++..+..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~-------~gi~~~~idi~----~~~~~~~eL~~~l~~~~~g 52 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEE-------HDIPFTERNIF----SSPLTIDEIKQILRMTEDG 52 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCcEEeecc----CChhhHHHHHHHHHHhcCC
Confidence 456678999999987655544 35555454433 2345788999999887543
No 238
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.48 E-value=3.3 Score=34.70 Aligned_cols=55 Identities=22% Similarity=0.198 Sum_probs=42.0
Q ss_pred eecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEe
Q psy299 50 VKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAF 104 (240)
Q Consensus 50 l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~V 104 (240)
....+|..+...+..++++++.|.-..||+|...++.+.+.+...++.++.+.-+
T Consensus 69 ~~~~~~~~~~~G~~~~~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~~~~~~~~ 123 (244)
T COG1651 69 YLTPDGKDVVLGNPYAPVTVVEFFDYTCPYCKEAFPELKKKYIDDGKVRLVLREF 123 (244)
T ss_pred eecCCCCcccccCCCCCceEEEEecCcCccHHHHHHHHHHHhhhcCCCceEEEEe
Confidence 3455666666667777999999999999999999999999777777654444433
No 239
>PRK10824 glutaredoxin-4; Provisional
Probab=83.44 E-value=3.7 Score=30.80 Aligned_cols=26 Identities=12% Similarity=0.379 Sum_probs=17.8
Q ss_pred CcEEEEEEec----CCCCCcHHHHHHHHHH
Q psy299 65 GHVLVIVNVA----SRCGYTGKHYKELVEL 90 (240)
Q Consensus 65 gk~vlv~F~a----twCp~C~~~~~~L~~l 90 (240)
.++|+|+--. +|||+|......|+++
T Consensus 14 ~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~ 43 (115)
T PRK10824 14 ENPILLYMKGSPKLPSCGFSAQAVQALSAC 43 (115)
T ss_pred cCCEEEEECCCCCCCCCchHHHHHHHHHHc
Confidence 4556555544 5999999877766664
No 240
>PHA03075 glutaredoxin-like protein; Provisional
Probab=83.28 E-value=0.95 Score=33.87 Aligned_cols=39 Identities=21% Similarity=0.308 Sum_probs=32.4
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEe
Q psy299 66 HVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAF 104 (240)
Q Consensus 66 k~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~V 104 (240)
|.+||-|.-+-|+.|...-..|+++.++|.=..+.++++
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~ilrVNIlSf 40 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYDILRVNILSF 40 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhccccEEEEEeeee
Confidence 568999999999999999999988888887555666664
No 241
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=83.13 E-value=0.78 Score=34.37 Aligned_cols=35 Identities=14% Similarity=0.170 Sum_probs=25.2
Q ss_pred EEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeecc
Q psy299 170 FIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHA 224 (240)
Q Consensus 170 ~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~ 224 (240)
++.|+++.+...+.....| ..||||++|+++++|.
T Consensus 89 ~~~D~~~~~~~~~~v~~~P--------------------~~~vid~~G~v~~~~~ 123 (126)
T cd03012 89 VANDNDYATWRAYGNQYWP--------------------ALYLIDPTGNVRHVHF 123 (126)
T ss_pred EEECCchHHHHHhCCCcCC--------------------eEEEECCCCcEEEEEe
Confidence 7888887765544322222 7899999999999874
No 242
>PRK12559 transcriptional regulator Spx; Provisional
Probab=81.89 E-value=3.4 Score=31.64 Aligned_cols=51 Identities=12% Similarity=0.092 Sum_probs=34.3
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcc
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQ 130 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~ 130 (240)
+..|..++|+.|+.....|.+ .|+.+-.+.+. .++-+.++++.+++..+..
T Consensus 2 i~iY~~~~C~~crkA~~~L~~-------~gi~~~~~di~----~~~~s~~el~~~l~~~~~g 52 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEE-------NQIDYTEKNIV----SNSMTVDELKSILRLTEEG 52 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------cCCCeEEEEee----CCcCCHHHHHHHHHHcCCC
Confidence 456778999999987655554 34555444433 3345899999999985443
No 243
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=81.75 E-value=21 Score=30.92 Aligned_cols=59 Identities=20% Similarity=0.246 Sum_probs=31.4
Q ss_pred cccCCeEeecCCCCcccCCCCC--CcEEEEEEecCCCCCcHHH-HHHHHHHHHHHh--hcCcEEEEeecC
Q psy299 43 ETVYDFTVKNIKGEDVPLSTYK--GHVLVIVNVASRCGYTGKH-YKELVELDEKFR--DRGLRILAFPCN 107 (240)
Q Consensus 43 ~~~p~f~l~d~~G~~v~ls~~~--gk~vlv~F~atwCp~C~~~-~~~L~~l~~~~~--~~~v~vi~Vs~D 107 (240)
..+|.|.++|.+|.++-.+.-. ++.+...|. |+.. ...|+++...-. ..+++|+.|+++
T Consensus 73 ~~VPVF~itn~~G~p~l~~~~~~~~~~v~~~F~------s~~dA~~~L~~lk~~~p~~~~~~kV~pvsL~ 136 (274)
T PF04278_consen 73 AGVPVFTITNSQGEPVLVSGPDQGGKSVGLFFF------SQQDAEAFLAQLKKSNPELASGAKVVPVSLG 136 (274)
T ss_dssp TTSEEEEEE-TT--B-----TTS--SEEEEEES-------HHHHHHHHHHHHH-SSHHHTT-EEEEEEHH
T ss_pred cCceEEEEECCCCCEEEeccCCCCCceEEEEEe------cHHHHHHHHHHHhhhCccccCceEEEEecHH
Confidence 4789999999999998776665 566666553 3433 344555555433 347999999876
No 244
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=81.36 E-value=4.3 Score=33.38 Aligned_cols=57 Identities=12% Similarity=0.226 Sum_probs=43.0
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeee
Q psy299 66 HVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 66 k~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~ 134 (240)
.-.|..|.-..|+.|...+..+.. ....+.|+.|..+ .+.+.++.++.+++++-..+
T Consensus 109 ~~rlalFvkd~C~~C~~~~~~l~a-----~~~~~Diylvgs~-------~dD~~Ir~WA~~~~Idp~~V 165 (200)
T TIGR03759 109 GGRLALFVKDDCVACDARVQRLLA-----DNAPLDLYLVGSQ-------GDDERIRQWANRHQIDPAKV 165 (200)
T ss_pred CCeEEEEeCCCChHHHHHHHHHhc-----CCCceeEEEecCC-------CCHHHHHHHHHHcCCCHHHe
Confidence 344566666999999988887744 3446888888644 58899999999999976444
No 245
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=80.86 E-value=1.5 Score=32.69 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=27.7
Q ss_pred EEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCC
Q psy299 170 FIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANAS 228 (240)
Q Consensus 170 ~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~ 228 (240)
+++|.++.+...+.-...| ..|+||++|+++.++.-...
T Consensus 84 ~~~D~~~~~~~~~~v~~~P--------------------~~~~ld~~G~v~~~~~G~~~ 122 (127)
T cd03010 84 VGFDPDGRVGIDLGVYGVP--------------------ETFLIDGDGIIRYKHVGPLT 122 (127)
T ss_pred EEECCcchHHHhcCCCCCC--------------------eEEEECCCceEEEEEeccCC
Confidence 5678888776655433323 58999999999999865443
No 246
>KOG0913|consensus
Probab=80.04 E-value=0.41 Score=40.29 Aligned_cols=37 Identities=19% Similarity=0.199 Sum_probs=29.7
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEE
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRIL 102 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi 102 (240)
|-+ ++.|.++|||.|..-.|++.+...--.+.++.+-
T Consensus 40 gew-mi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va 76 (248)
T KOG0913|consen 40 GEW-MIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVA 76 (248)
T ss_pred hHH-HHHhcCCCCccccchHHHHhccCCccCCCceeEE
Confidence 444 5789999999999999999998877666666653
No 247
>PRK13190 putative peroxiredoxin; Provisional
Probab=79.11 E-value=1.5 Score=36.03 Aligned_cols=58 Identities=12% Similarity=-0.037 Sum_probs=35.0
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCC----CCccchhhhhhh
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAAN----ASPASLIPNIEK 238 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~ 238 (240)
|.-++.|++|.+...+.-...... ...+ ..||||++|++++.+.-+ ...++++..|++
T Consensus 91 ~fPll~D~~~~ia~~ygv~~~~~g--------~~~p------~~fiId~~G~I~~~~~~~~~~gr~~~ellr~l~~ 152 (202)
T PRK13190 91 PFPVIADIDKELAREYNLIDENSG--------ATVR------GVFIIDPNQIVRWMIYYPAETGRNIDEIIRITKA 152 (202)
T ss_pred eEEEEECCChHHHHHcCCccccCC--------cEEe------EEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 345899999988766543111000 0122 679999999999875221 233666666654
No 248
>PRK13191 putative peroxiredoxin; Provisional
Probab=78.45 E-value=1.8 Score=36.08 Aligned_cols=59 Identities=19% Similarity=0.110 Sum_probs=35.7
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCc----cchhhhhhh
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASP----ASLIPNIEK 238 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~ 238 (240)
|.-++.|++|++...+.-... +. .....+ ..||||++|++++.+-.++.. +|++..|++
T Consensus 97 ~fPllsD~~~~ia~~ygv~~~-~~------~~~~~r------~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 159 (215)
T PRK13191 97 PFPIIADPMGNVAKRLGMIHA-ES------STATVR------AVFIVDDKGTVRLILYYPMEIGRNIDEILRAIRA 159 (215)
T ss_pred ceEEEECCchHHHHHcCCccc-cc------CCceeE------EEEEECCCCEEEEEEecCCCCCCCHHHHHHHHHH
Confidence 445899999988776643211 10 001112 789999999999985444333 555555543
No 249
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=77.84 E-value=18 Score=33.61 Aligned_cols=68 Identities=10% Similarity=0.135 Sum_probs=51.2
Q ss_pred cCCcccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCC
Q psy299 40 KNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQ 108 (240)
Q Consensus 40 ~~g~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~ 108 (240)
.-+..+-.+.+.-.+|+.+++.+++|..=+|..-++. ..|...+...+...+++.++||.||-|..+.
T Consensus 271 ~Ree~L~rL~v~l~~~~~v~l~~LRg~~RvvIvAG~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~~ 338 (453)
T PLN03098 271 TRDETLSRLPVRLSTNRIVELVQLRDITRPVILAGTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWGE 338 (453)
T ss_pred HhhhhhccceEeccCCCEEeHHHhcCcceEEEEECCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecCC
Confidence 3445566666665568899999999975444443333 5778889999999999999999999998763
No 250
>PRK15000 peroxidase; Provisional
Probab=77.80 E-value=1.8 Score=35.63 Aligned_cols=57 Identities=9% Similarity=0.079 Sum_probs=35.6
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCc----cchhhhhh
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASP----ASLIPNIE 237 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~ 237 (240)
+..++.|+++.+...+.-..... -+..+ ..||||++|++++.+-.+..+ ++++..|+
T Consensus 99 ~fpllsD~~~~ia~~ygv~~~~~--------g~~~r------~tfiID~~G~I~~~~~~~~~~gr~~~eilr~l~ 159 (200)
T PRK15000 99 KYAMVADVKREIQKAYGIEHPDE--------GVALR------GSFLIDANGIVRHQVVNDLPLGRNIDEMLRMVD 159 (200)
T ss_pred CceEEECCCcHHHHHcCCccCCC--------CcEEe------EEEEECCCCEEEEEEecCCCCCCCHHHHHHHHH
Confidence 34489999998776664221110 11223 789999999999987654444 44554443
No 251
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=77.17 E-value=17 Score=27.33 Aligned_cols=16 Identities=19% Similarity=0.420 Sum_probs=14.3
Q ss_pred eEEEEcCCCCeeeecc
Q psy299 209 TKFIVDKNGAPVERHA 224 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~ 224 (240)
..||||++|++++.|-
T Consensus 132 ~~fvid~~g~i~~~~~ 147 (149)
T cd02970 132 GVFVIGPDGTILFAHV 147 (149)
T ss_pred eEEEECCCCeEEEEec
Confidence 7899999999998864
No 252
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=77.13 E-value=6.6 Score=30.08 Aligned_cols=51 Identities=18% Similarity=0.121 Sum_probs=34.0
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcce
Q psy299 70 IVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQF 131 (240)
Q Consensus 70 v~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~f 131 (240)
..|..++|+.|+.....|++ +|+.+-.+.+. .++-+.+++..+++..+..+
T Consensus 3 ~iY~~~~C~~crkA~~~L~~-------~~i~~~~~d~~----~~~~s~~eL~~~l~~~~~~~ 53 (132)
T PRK13344 3 KIYTISSCTSCKKAKTWLNA-------HQLSYKEQNLG----KEPLTKEEILAILTKTENGI 53 (132)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEECC----CCCCCHHHHHHHHHHhCCCH
Confidence 45668999999986655444 45555444433 23458899999999877544
No 253
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=76.87 E-value=13 Score=35.41 Aligned_cols=42 Identities=12% Similarity=0.131 Sum_probs=27.8
Q ss_pred CCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEE
Q psy299 60 LSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILA 103 (240)
Q Consensus 60 ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~ 103 (240)
|.++++.+.|+.|+...|..|......|+++. .+.++ +.+..
T Consensus 361 ~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~-i~~~~ 402 (555)
T TIGR03143 361 FGRLENPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEK-LNSEA 402 (555)
T ss_pred HHhcCCCEEEEEEECCCchhhHHHHHHHHHHH-hcCCc-EEEEE
Confidence 34566778888898888888876666666655 44443 54433
No 254
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=76.35 E-value=27 Score=25.77 Aligned_cols=24 Identities=8% Similarity=0.205 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHh-hcCcEEEEee
Q psy299 81 GKHYKELVELDEKFR-DRGLRILAFP 105 (240)
Q Consensus 81 ~~~~~~L~~l~~~~~-~~~v~vi~Vs 105 (240)
......+.+++++++ ++ +.++.+.
T Consensus 34 ~~~~~~~~~vAk~fk~gk-i~Fv~~D 58 (111)
T cd03073 34 NYWRNRVLKVAKDFPDRK-LNFAVAD 58 (111)
T ss_pred HHHHHHHHHHHHHCcCCe-EEEEEEc
Confidence 345788888888888 55 6666664
No 255
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=76.33 E-value=5.7 Score=37.46 Aligned_cols=54 Identities=9% Similarity=0.048 Sum_probs=37.4
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcc
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQ 130 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~ 130 (240)
.+..-+..|....||+|+.....++++..... ++..-.|. .....+++++|++.
T Consensus 115 ~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~--~i~~~~id-----------~~~~~~~~~~~~v~ 168 (517)
T PRK15317 115 DGDFHFETYVSLSCHNCPDVVQALNLMAVLNP--NITHTMID-----------GALFQDEVEARNIM 168 (517)
T ss_pred CCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCC--CceEEEEE-----------chhCHhHHHhcCCc
Confidence 34556888889999999998888888887644 46655552 33445556666664
No 256
>PF02743 Cache_1: Cache domain; InterPro: IPR004010 Cache is an extracellular domain that is predicted to have a role in small-molecule recognition in a wide range of proteins, including the animal dihydropyridine-sensitive voltage-gated Ca2+ channel; alpha-2delta subunit, and various bacterial chemotaxis receptors. The name Cache comes from CAlcium channels and CHEmotaxis receptors. This domain consists of an N-terminal part with three predicted strands and an alpha-helix, and a C-terminal part with a strand dyad followed by a relatively unstructured region. The N-terminal portion of the (unpermuted) Cache domain contains three predicted strands that could form a sheet analogous to that present in the core of the PAS domain structure. Cache domains are particularly widespread in bacteria, with Vibrio cholerae. The animal calcium channel alpha-2delta subunits might have acquired a part of their extracellular domains from a bacterial source []. The Cache domain appears to have arisen from the GAF-PAS fold despite their divergent functions [].; GO: 0016020 membrane; PDB: 3C8C_A 3LIB_D 3LIA_A 3LI8_A 3LI9_A.
Probab=76.17 E-value=2.4 Score=29.03 Aligned_cols=57 Identities=25% Similarity=0.203 Sum_probs=38.8
Q ss_pred EEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCcc
Q psy299 170 FIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPA 230 (240)
Q Consensus 170 ~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 230 (240)
=+.|++|+++.........+.|.+.++++ .+.-+=.-|++|++|.++..-+.+....
T Consensus 20 pi~~~~g~~~Gvv~~di~l~~l~~~i~~~----~~~~~g~~~ivd~~G~ii~hp~~~~i~~ 76 (81)
T PF02743_consen 20 PIYDDDGKIIGVVGIDISLDQLSEIISNI----KFGNNGYAFIVDKNGTIIAHPDKDLINK 76 (81)
T ss_dssp EEEETTTEEEEEEEEEEEHHHHHHHHTTS----BBTTTBEEEEEETTSBBCE-SSGGCTTS
T ss_pred EEECCCCCEEEEEEEEeccceeeeEEEee----EECCCEEEEEEECCCCEEEeCChHHhcc
Confidence 48889999998876655555555555443 3333447899999999998766655543
No 257
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=75.24 E-value=3.8 Score=28.36 Aligned_cols=52 Identities=10% Similarity=0.178 Sum_probs=36.7
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeee
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~ 134 (240)
|+.|....|+.|......|.++... .++.+-.|.++ ++++ +..+|+...|++
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~---~~~~l~~vDI~-------~d~~----l~~~Y~~~IPVl 53 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE---FPFELEEVDID-------EDPE----LFEKYGYRIPVL 53 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT---STCEEEEEETT-------TTHH----HHHHSCTSTSEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh---cCceEEEEECC-------CCHH----HHHHhcCCCCEE
Confidence 6778889999999887777764433 34777777766 2343 666888888887
No 258
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.70 E-value=4.7 Score=27.87 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=29.8
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHh
Q psy299 70 IVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKK 126 (240)
Q Consensus 70 v~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~ 126 (240)
+.|++..||-|.....+|.++.= +++.|-|. .+-..+++|+.-
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl~v-----~yd~VeIt---------~Sm~NlKrFl~l 47 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERLNV-----DYDFVEIT---------ESMANLKRFLHL 47 (85)
T ss_pred eeeccccCcchHHHHHHHHHcCC-----Cceeeehh---------hhhhhHHHHHhh
Confidence 56889999999988777766533 34455553 466778887763
No 259
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=74.21 E-value=9.2 Score=30.03 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=25.9
Q ss_pred CcE-EEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeec
Q psy299 65 GHV-LVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106 (240)
Q Consensus 65 gk~-vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~ 106 (240)
+++ +++.|..............++.+.++++++ +.++.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~-~~f~~~d~ 135 (184)
T PF13848_consen 94 PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGK-INFVYVDA 135 (184)
T ss_dssp SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTT-SEEEEEET
T ss_pred CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCe-EEEEEeeh
Confidence 444 666665445555666677777777777764 66666643
No 260
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=73.99 E-value=18 Score=35.32 Aligned_cols=21 Identities=10% Similarity=0.118 Sum_probs=18.7
Q ss_pred CCcEEEEEEecCCCCCcHHHH
Q psy299 64 KGHVLVIVNVASRCGYTGKHY 84 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~ 84 (240)
.+|||+|...++||-=|+.+.
T Consensus 42 edkPIflSIGys~CHWChVM~ 62 (667)
T COG1331 42 EDKPILLSIGYSTCHWCHVMA 62 (667)
T ss_pred hCCCEEEEeccccccchHHHh
Confidence 479999999999999999763
No 261
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=72.95 E-value=4.9 Score=34.35 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=29.1
Q ss_pred CCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhh
Q psy299 63 YKGHVLVIVNVASRCGYTGKHYKELVELDEKFRD 96 (240)
Q Consensus 63 ~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~ 96 (240)
..||+.+++..+-|||.|..+.=.|-....+|..
T Consensus 56 ~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn 89 (249)
T PF06053_consen 56 PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGN 89 (249)
T ss_pred CCCeeEEEEEecccCccchhhHHHHHHHHHhcCC
Confidence 4699999999999999999998777777777775
No 262
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=72.19 E-value=3.4 Score=33.47 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=34.8
Q ss_pred eEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCC----Cccchhhhhhh
Q psy299 168 TKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANA----SPASLIPNIEK 238 (240)
Q Consensus 168 ~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~ 238 (240)
.-++.|+++.+...+.-..... -+..+ .+||||++|++++.+-... ..++++..|++
T Consensus 94 fpllsD~~~~~a~~~gv~~~~~--------g~~~p------~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~l~~ 154 (187)
T TIGR03137 94 YPMLGDPTGVLTRNFGVLIEEA--------GLADR------GTFVIDPEGVIQAVEITDNGIGRDASELLRKIKA 154 (187)
T ss_pred eeEEECCccHHHHHhCCcccCC--------Cceee------EEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 4478999888766554221110 01112 6899999999999974332 33566666643
No 263
>KOG1752|consensus
Probab=71.29 E-value=14 Score=27.16 Aligned_cols=45 Identities=22% Similarity=0.267 Sum_probs=24.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHH
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTK 125 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~ 125 (240)
+|.|--+|||+|+.. +++... .++....+-+|.. .+..++++.+.
T Consensus 16 VVifSKs~C~~c~~~----k~ll~~---~~v~~~vvELD~~-----~~g~eiq~~l~ 60 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRA----KELLSD---LGVNPKVVELDED-----EDGSEIQKALK 60 (104)
T ss_pred EEEEECCcCchHHHH----HHHHHh---CCCCCEEEEccCC-----CCcHHHHHHHH
Confidence 466778999999973 333333 3344444544521 23345666555
No 264
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=71.10 E-value=18 Score=26.77 Aligned_cols=73 Identities=16% Similarity=0.285 Sum_probs=47.8
Q ss_pred CCCCcccCCCCCC-cEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCC---CCCCHHHHHHHHHhc-
Q psy299 53 IKGEDVPLSTYKG-HVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQ---EPGDADQICEFTKKK- 127 (240)
Q Consensus 53 ~~G~~v~ls~~~g-k~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~---~~~~~e~~~~~~~~~- 127 (240)
...+.-.++++.+ .+-||-|+ .|+.|. -..+....+++.+.|+++|.++.=...+. .=-..+.+++.+++.
T Consensus 23 ~~~r~g~F~~y~~~~~elvgf~--~CgGCp--g~~~~~~~~~l~~~~~d~IHlssC~~~~~~~~~CP~~~~~~~~I~~~~ 98 (107)
T PF08821_consen 23 FNERKGAFARYDDEDVELVGFF--TCGGCP--GRKLVRRIKKLKKNGADVIHLSSCMVKGNPHGPCPHIDEIKKIIEEKF 98 (107)
T ss_pred HHhccCccccCCCCCeEEEEEe--eCCCCC--hhHHHHHHHHHHHCCCCEEEEcCCEecCCCCCCCCCHHHHHHHHHHHh
Confidence 3444556888876 68888884 566666 66777777777888899988765432222 112467777777765
Q ss_pred Cc
Q psy299 128 NV 129 (240)
Q Consensus 128 ~~ 129 (240)
|+
T Consensus 99 gi 100 (107)
T PF08821_consen 99 GI 100 (107)
T ss_pred CC
Confidence 65
No 265
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=69.72 E-value=4.7 Score=28.34 Aligned_cols=16 Identities=38% Similarity=0.777 Sum_probs=14.0
Q ss_pred eEEEEcCCCCeeeecc
Q psy299 209 TKFIVDKNGAPVERHA 224 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~ 224 (240)
..+|+|++|+++++|.
T Consensus 100 ~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 100 TTFLIDRDGRIRARHV 115 (116)
T ss_pred eEEEECCCCcEEEEec
Confidence 4689999999999875
No 266
>PRK13599 putative peroxiredoxin; Provisional
Probab=69.63 E-value=4.5 Score=33.73 Aligned_cols=59 Identities=15% Similarity=0.114 Sum_probs=35.0
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCC----ccchhhhhhh
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANAS----PASLIPNIEK 238 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~ 238 (240)
|.-++.|++|++...+.- ..+.. .....+ ..||||++|++++.+-.... .++++..|++
T Consensus 92 ~fPil~D~~~~va~~yg~-~~~~~------~~~~~R------~tfIID~dG~Ir~~~~~p~~~gr~~~eilr~l~~ 154 (215)
T PRK13599 92 PFPVIADDLGKVSNQLGM-IHPGK------GTNTVR------AVFIVDDKGTIRLIMYYPQEVGRNVDEILRALKA 154 (215)
T ss_pred ceeEEECCCchHHHHcCC-CccCC------CCceee------EEEEECCCCEEEEEEEcCCCCCCCHHHHHHHHHH
Confidence 344899999988665532 11110 000122 78999999999998532222 2566665543
No 267
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=69.54 E-value=4.6 Score=30.76 Aligned_cols=19 Identities=16% Similarity=0.386 Sum_probs=16.0
Q ss_pred eEEEEcCCCCeeeeccCCC
Q psy299 209 TKFIVDKNGAPVERHAANA 227 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~~~~ 227 (240)
..||||++|+++++|....
T Consensus 116 ~~~lid~~G~v~~~~~~~~ 134 (149)
T cd03018 116 AVFVIDRDGIIRYAWVSDD 134 (149)
T ss_pred eEEEECCCCEEEEEEecCC
Confidence 5799999999999966554
No 268
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=69.08 E-value=14 Score=29.36 Aligned_cols=50 Identities=26% Similarity=0.369 Sum_probs=37.0
Q ss_pred eEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCccchhhhh
Q psy299 168 TKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPASLIPNI 236 (240)
Q Consensus 168 ~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 236 (240)
+.|++|.+|.++..|.-.... + .-.|+||+|+++....-.+.|+++-.-|
T Consensus 105 s~~vlD~~G~~~~aW~L~~~~-------------S------aiiVlDK~G~V~F~k~G~Ls~~Ev~qVi 154 (160)
T PF09695_consen 105 SQFVLDSNGVVRKAWQLQEES-------------S------AIIVLDKQGKVQFVKEGALSPAEVQQVI 154 (160)
T ss_pred cEEEEcCCCceeccccCCCCC-------------c------eEEEEcCCccEEEEECCCCCHHHHHHHH
Confidence 358999999988887533221 1 3358999999999999999997765444
No 269
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=68.21 E-value=11 Score=35.44 Aligned_cols=54 Identities=11% Similarity=0.081 Sum_probs=37.4
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcc
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQ 130 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~ 130 (240)
.+..-+..|....||+|+.....++++..... ++..-.| +.....+.+++|++.
T Consensus 116 ~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~i-----------d~~~~~~~~~~~~v~ 169 (515)
T TIGR03140 116 NGPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMI-----------DGALFQDEVEALGIQ 169 (515)
T ss_pred CCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEE-----------EchhCHHHHHhcCCc
Confidence 45566888889999999988888888777755 4554444 234445566666664
No 270
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=68.13 E-value=5.4 Score=29.26 Aligned_cols=46 Identities=28% Similarity=0.276 Sum_probs=33.4
Q ss_pred EEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCccchhhh
Q psy299 169 KFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPASLIPN 235 (240)
Q Consensus 169 ~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 235 (240)
.++.|+++.+...+.-...| .-++||++| +++++..-+.++++.+.
T Consensus 76 ~~~~d~~~~~~~~~~i~~~P--------------------~~~vid~~g-i~~~~~g~~~~~~~~~~ 121 (123)
T cd03011 76 PVINDPDGVISARWGVSVTP--------------------AIVIVDPGG-IVFVTTGVTSEWGLRLR 121 (123)
T ss_pred cEEECCCcHHHHhCCCCccc--------------------EEEEEcCCC-eEEEEeccCCHHHHHhh
Confidence 36778888776665433333 889999999 99998887777776553
No 271
>PTZ00062 glutaredoxin; Provisional
Probab=68.11 E-value=18 Score=29.91 Aligned_cols=36 Identities=11% Similarity=0.268 Sum_probs=20.8
Q ss_pred CcEEEEEEec----CCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 65 GHVLVIVNVA----SRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 65 gk~vlv~F~a----twCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
.++++|+--+ ++||.|+.....|++ .++.+..+.++
T Consensus 112 ~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~-------~~i~y~~~DI~ 151 (204)
T PTZ00062 112 NHKILLFMKGSKTFPFCRFSNAVVNMLNS-------SGVKYETYNIF 151 (204)
T ss_pred cCCEEEEEccCCCCCCChhHHHHHHHHHH-------cCCCEEEEEcC
Confidence 4566555543 578888866555553 34555555444
No 272
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=67.99 E-value=3.9 Score=33.49 Aligned_cols=42 Identities=19% Similarity=0.183 Sum_probs=28.9
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeee
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVER 222 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~ 222 (240)
+.-++-|++++|...+.-..+...+ +.+ ..||||++|++++-
T Consensus 98 ~~PmiaD~~~~vs~~ygvl~~~~g~--------a~R------~~FIIDp~g~ir~~ 139 (194)
T COG0450 98 KFPMIADPKGEIARAYGVLHPEEGL--------ALR------GTFIIDPDGVIRHI 139 (194)
T ss_pred ecceEEcCchhHHHHcCCcccCCCc--------cee------EEEEECCCCeEEEE
Confidence 4558999999987766432222222 222 68999999999887
No 273
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=66.59 E-value=5.3 Score=34.41 Aligned_cols=56 Identities=9% Similarity=-0.022 Sum_probs=35.5
Q ss_pred eEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCc----cchhhhhhh
Q psy299 168 TKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASP----ASLIPNIEK 238 (240)
Q Consensus 168 ~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~~~~~~ 238 (240)
.-++.|+++.+...+.-.. .. -+..+ ..||||++|++++.+-.+..+ ++++..|++
T Consensus 164 fPlLsD~~~~iakayGv~~-~~--------g~a~R------~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~l~a 223 (261)
T PTZ00137 164 FPLFSDISREVSKSFGLLR-DE--------GFSHR------ASVLVDKAGVVKHVAVYDLGLGRSVDETLRLFDA 223 (261)
T ss_pred eEEEEcCChHHHHHcCCCC-cC--------Cceec------EEEEECCCCEEEEEEEeCCCCCCCHHHHHHHHHH
Confidence 4489999988876654321 10 11223 899999999999997444333 555555543
No 274
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=64.72 E-value=18 Score=29.04 Aligned_cols=59 Identities=12% Similarity=0.168 Sum_probs=45.4
Q ss_pred cEEEEEEecCCCC-CcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCccee
Q psy299 66 HVLVIVNVASRCG-YTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFD 132 (240)
Q Consensus 66 k~vlv~F~atwCp-~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp 132 (240)
|-+++++-.|=-| --....|++.++..++++.|+.++.+|-+ ++..++-+++..+++|-
T Consensus 29 kgvi~DlDNTLv~wd~~~~tpe~~~W~~e~k~~gi~v~vvSNn--------~e~RV~~~~~~l~v~fi 88 (175)
T COG2179 29 KGVILDLDNTLVPWDNPDATPELRAWLAELKEAGIKVVVVSNN--------KESRVARAAEKLGVPFI 88 (175)
T ss_pred cEEEEeccCceecccCCCCCHHHHHHHHHHHhcCCEEEEEeCC--------CHHHHHhhhhhcCCcee
Confidence 5666666555333 13334799999999999999999999844 88999999999999883
No 275
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=64.22 E-value=4.4 Score=38.43 Aligned_cols=48 Identities=19% Similarity=0.234 Sum_probs=36.2
Q ss_pred EEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCccchhhhhh
Q psy299 170 FIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPASLIPNIE 237 (240)
Q Consensus 170 ~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 237 (240)
+++|.++.+...+.-..-| ..||||++|++|.++.-....+++.+.|+
T Consensus 123 V~~D~~~~lak~fgV~giP--------------------Tt~IIDkdGkIV~~~~G~~~~eeL~a~Ie 170 (521)
T PRK14018 123 VLTDNGGTLAQSLNISVYP--------------------SWAIIGKDGDVQRIVKGSISEAQALALIR 170 (521)
T ss_pred eeccccHHHHHHcCCCCcC--------------------eEEEEcCCCeEEEEEeCCCCHHHHHHHHH
Confidence 6778888766655433333 78999999999999877777777777766
No 276
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=64.04 E-value=14 Score=33.90 Aligned_cols=32 Identities=6% Similarity=0.128 Sum_probs=23.0
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
++.|..+|||.|...-..|++ +|+.+-.|.+|
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~-------~gi~~~~idi~ 35 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGA-------NDIPFTQISLD 35 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCeEEEECC
Confidence 567889999999976655554 46666666655
No 277
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=63.77 E-value=8 Score=28.94 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=32.4
Q ss_pred eEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCccchhh
Q psy299 168 TKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPASLIP 234 (240)
Q Consensus 168 ~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 234 (240)
..++.|+++.+...+.....+.. +....+- ..||||++|+++++|...-..+...+
T Consensus 82 ~~~l~D~~~~~~~~~g~~~~~~~----------~~~~~~p-~~~lid~~g~i~~~~~~~~~~~~~~~ 137 (140)
T cd02971 82 FPLLSDPDGEFAKAYGVLIEKSA----------GGGLAAR-ATFIIDPDGKIRYVEVEPLPTGRNAE 137 (140)
T ss_pred ceEEECCChHHHHHcCCcccccc----------ccCceeE-EEEEECCCCcEEEEEecCCCCCcChH
Confidence 34788988866555533322211 1111111 58999999999999765544444333
No 278
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=63.54 E-value=7.2 Score=32.30 Aligned_cols=33 Identities=12% Similarity=0.308 Sum_probs=29.7
Q ss_pred ceeEEEEcCCCCeeeeccCCCCccchhhhhhhc
Q psy299 207 NFTKFIVDKNGAPVERHAANASPASLIPNIEKY 239 (240)
Q Consensus 207 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
+-.-|+||++|++...|.....|+++++.|++.
T Consensus 171 s~~~~lid~~G~~~~~~~~~~~~~~i~~~l~~l 203 (207)
T COG1999 171 SAGFYLIDADGRFLGTYDYGEPPEEIAADLKKL 203 (207)
T ss_pred eeEEEEECCCCeEEEEecCCCChHHHHHHHHHH
Confidence 668899999999999998888899999998874
No 279
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=63.34 E-value=8.7 Score=29.51 Aligned_cols=42 Identities=17% Similarity=0.030 Sum_probs=32.6
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeec
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~ 106 (240)
..|+++|-|.-.|-|.|...=..|.+..++.++- ..++.+.+
T Consensus 19 ~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi 60 (133)
T PF02966_consen 19 EDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDI 60 (133)
T ss_dssp SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEET
T ss_pred CceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEc
Confidence 3689999999999999999989999999988752 44444543
No 280
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=62.82 E-value=6.6 Score=29.77 Aligned_cols=16 Identities=25% Similarity=0.497 Sum_probs=14.5
Q ss_pred eEEEEcCCCCeeeecc
Q psy299 209 TKFIVDKNGAPVERHA 224 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~ 224 (240)
..||||++|++++.+-
T Consensus 112 ~~~iid~~G~I~~~~~ 127 (143)
T cd03014 112 AVFVIDENGKVIYVEL 127 (143)
T ss_pred EEEEEcCCCeEEEEEE
Confidence 6999999999999964
No 281
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=62.51 E-value=24 Score=26.18 Aligned_cols=49 Identities=14% Similarity=0.186 Sum_probs=33.2
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCc
Q psy299 70 IVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNV 129 (240)
Q Consensus 70 v~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~ 129 (240)
..|..+.|+.|+.....|.+. +..+.++-+.-+ +-+.++++.+++..|+
T Consensus 3 ~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~~------p~s~~eL~~~l~~~g~ 51 (113)
T cd03033 3 IFYEKPGCANNARQKALLEAA-----GHEVEVRDLLTE------PWTAETLRPFFGDLPV 51 (113)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhcC------CCCHHHHHHHHHHcCH
Confidence 456688999999877666553 123455555433 3488999999997764
No 282
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=62.17 E-value=6.9 Score=29.43 Aligned_cols=16 Identities=25% Similarity=0.424 Sum_probs=14.6
Q ss_pred eEEEEcCCCCeeeecc
Q psy299 209 TKFIVDKNGAPVERHA 224 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~ 224 (240)
..||||++|+++.+|.
T Consensus 126 ~~~lid~~G~i~~~~~ 141 (142)
T cd02968 126 AIYLVDPDGKLVRYYG 141 (142)
T ss_pred eEEEECCCCCEEEeec
Confidence 5899999999999986
No 283
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=61.52 E-value=54 Score=24.05 Aligned_cols=35 Identities=11% Similarity=-0.128 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCeEEe-ccCCCCccchHHHHHHhccc
Q psy299 167 FTKFIVDKNGVPVER-HAANASPASLIPHIEILGRT 201 (240)
Q Consensus 167 P~~~lID~~G~Iv~~-~~~~~~~~~l~~~L~~ll~~ 201 (240)
|...+++-++.-.+. ..+..+++.|.+.++.++++
T Consensus 75 P~i~i~~~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~G 110 (111)
T cd03072 75 PVIAIDSFRHMYLFPDFEDVYVPGKLKQFVLDLHSG 110 (111)
T ss_pred CEEEEEcchhcCcCCCCccccCHHHHHHHHHHHhcC
Confidence 555666665522333 33455667788888888776
No 284
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=61.26 E-value=8.7 Score=30.23 Aligned_cols=32 Identities=19% Similarity=0.266 Sum_probs=22.9
Q ss_pred eEEEEcCCCCe-eeeccCCCCccchhhhhhhcC
Q psy299 209 TKFIVDKNGAP-VERHAANASPASLIPNIEKYL 240 (240)
Q Consensus 209 ~~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 240 (240)
+.|+||++|++ +.++.-....+++.+.|...|
T Consensus 121 Tt~LID~~G~~i~~~~~G~~s~~~l~~~I~~ll 153 (153)
T TIGR02738 121 ATFLVNVNTRKAYPVLQGAVDEAELANRMDEIL 153 (153)
T ss_pred eEEEEeCCCCEEEEEeecccCHHHHHHHHHHhC
Confidence 89999999886 445555556666777776654
No 285
>PF08496 Peptidase_S49_N: Peptidase family S49 N-terminal; InterPro: IPR013703 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain is found to the N terminus of bacterial signal peptidases that belong to the MEROPS peptidase family S49 (protease IV family, clan SK) (see also IPR002142 from INTERPRO) [, ]. ; GO: 0004252 serine-type endopeptidase activity, 0005886 plasma membrane
Probab=60.89 E-value=13 Score=29.35 Aligned_cols=57 Identities=18% Similarity=0.090 Sum_probs=41.0
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCc
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASP 229 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~ 229 (240)
|..|++|=+|-|... ..+.|+++|..+|.--.+...- ---.++-|.+||.|+=-+++
T Consensus 98 ~r~~VldF~Gdi~A~-----~v~~LReeisail~~a~~~DeV-~~rLES~GG~Vh~YGLAasQ 154 (155)
T PF08496_consen 98 PRLFVLDFKGDIKAS-----EVESLREEISAILSVATPEDEV-LVRLESPGGMVHGYGLAASQ 154 (155)
T ss_pred CeEEEEecCCCccHH-----HHHHHHHHHHHHHHhCCCCCeE-EEEEecCCceeeccchhhcc
Confidence 889999999987743 3466999999999665554221 12258899999999855443
No 286
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=59.84 E-value=8.9 Score=31.45 Aligned_cols=60 Identities=12% Similarity=0.013 Sum_probs=34.9
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCC----ccchhhhhhh
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANAS----PASLIPNIEK 238 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~ 238 (240)
|.-++.|++|.+...+.-. .++. ......=..||||++|+++..+.-... .++++..|++
T Consensus 89 ~fpil~D~~~~ia~~yg~~-~~~~-----------~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell~~l~~ 152 (203)
T cd03016 89 PFPIIADPDREVAKLLGMI-DPDA-----------GSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEILRVVDA 152 (203)
T ss_pred ceeEEECchHHHHHHcCCc-cccC-----------CCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 4458999999887665432 1110 000000158999999999988633222 2566666544
No 287
>KOG2792|consensus
Probab=59.31 E-value=5.8 Score=34.04 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=29.3
Q ss_pred ceeEEEEcCCCCeeeeccCCCCccchhhhhhh
Q psy299 207 NFTKFIVDKNGAPVERHAANASPASLIPNIEK 238 (240)
Q Consensus 207 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (240)
.+-=||||++|.-|..|+.|-.++++.+.|++
T Consensus 242 Si~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~ 273 (280)
T KOG2792|consen 242 SIFMYLIDPEGEFVDYYGRNYDADELADSILK 273 (280)
T ss_pred eEEEEEECCCcceehhhcccCCHHHHHHHHHH
Confidence 56779999999999999999999999998876
No 288
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=58.85 E-value=27 Score=25.84 Aligned_cols=50 Identities=10% Similarity=0.190 Sum_probs=34.0
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcc
Q psy299 70 IVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQ 130 (240)
Q Consensus 70 v~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~ 130 (240)
..|..+.|..|++....|++. +..+.++-+. ..+-+.++++.+++..|..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~------~~p~t~~el~~~l~~~g~~ 51 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYL------KNPPTKSELEAIFAKLGLT 51 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEecc------CCCcCHHHHHHHHHHcCCc
Confidence 356688999999887777663 2224444443 2345899999999987753
No 289
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=58.82 E-value=41 Score=25.20 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=35.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcce
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQF 131 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~f 131 (240)
+-.|+.+.|..|+.....|++..- .+.++-+.-+ +-+.+.+++++++.+..+
T Consensus 3 itiy~~p~C~t~rka~~~L~~~gi-----~~~~~~y~~~------~~s~~eL~~~l~~~g~~~ 54 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEHGI-----EYTFIDYLKT------PPSREELKKILSKLGDGV 54 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC-----CcEEEEeecC------CCCHHHHHHHHHHcCccH
Confidence 456778999999987776655322 2445555533 348999999999888655
No 290
>KOG4614|consensus
Probab=58.47 E-value=13 Score=31.48 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=21.9
Q ss_pred eEEEEcCCCCeEEeccCCCCccchHHH
Q psy299 168 TKFIVDKNGVPVERHAANASPASLIPH 194 (240)
Q Consensus 168 ~~~lID~~G~Iv~~~~~~~~~~~l~~~ 194 (240)
.+||||.+|+|++..-|..+|+++++-
T Consensus 250 yV~L~D~s~kIRW~g~G~aTp~Eve~L 276 (287)
T KOG4614|consen 250 YVLLLDKSGKIRWQGFGTATPEEVEQL 276 (287)
T ss_pred EEEEEccCceEEEeecCCCCHHHHHHH
Confidence 458999999999998888888775443
No 291
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=58.29 E-value=7.5 Score=31.47 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=19.3
Q ss_pred eEEEEcCCCCeeeeccCCCCc--cchhhhhh
Q psy299 209 TKFIVDKNGAPVERHAANASP--ASLIPNIE 237 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~ 237 (240)
..|+||++|+++.+...+... ++++++++
T Consensus 149 ~~~lID~~G~I~~~g~~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 149 YGVLLDQDGKIRAKGLTNTREHLESLLEADR 179 (189)
T ss_pred eEEEECCCCeEEEccCCCCHHHHHHHHHHHH
Confidence 579999999999985433322 44555443
No 292
>PF13426 PAS_9: PAS domain; PDB: 3ULF_B 3UE6_E 2Z6D_B 2Z6C_B 3P7N_B 1LL8_A 3MJQ_A 3BWL_A 4EET_B 4EEP_A ....
Probab=57.43 E-value=33 Score=23.29 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=33.3
Q ss_pred EEEEcCCCCeEEec----------------------cCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCee
Q psy299 169 KFIVDKNGVPVERH----------------------AANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPV 220 (240)
Q Consensus 169 ~~lID~~G~Iv~~~----------------------~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~ 220 (240)
.+++|++|+|++.. ........+...+.+.+.+... |+.+--+..++|...
T Consensus 4 i~i~d~~g~i~~~N~~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~~~~~~~g~~~ 76 (104)
T PF13426_consen 4 IFILDPDGRILYVNPAFERLFGYSREELIGKSISDFFPEEDRPEFEEQIERALEEGGS-WSGEVRLRRKDGETF 76 (104)
T ss_dssp EEEEETTSBEEEE-HHHHHHHTS-HHHHTTSBGGGGCSTTSCHHHHHHHHHHHHHTSS-EEEEEEEEETTSEEE
T ss_pred EEEECCcCcEEehhHHHHHHHCcCHHHHcCCCcccccCcccchhhHHHHHHHHhcCCc-eeEEEEEEcCCCCEE
Confidence 37888888888765 1111123466777777765555 888888888888665
No 293
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.42 E-value=23 Score=29.81 Aligned_cols=79 Identities=13% Similarity=0.049 Sum_probs=46.8
Q ss_pred CCHHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHH
Q psy299 115 GDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPH 194 (240)
Q Consensus 115 ~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~ 194 (240)
.+.+.+.+.+.+.|++-..+...-........+..-..... --+|+.+|++++ +|++ .-.|..+++.+...
T Consensus 138 ~D~dVL~diA~~~GLD~~~~~~~L~s~~~~~avr~d~~~A~----e~gI~gVP~fv~---d~~~--~V~Gaq~~~v~~~a 208 (225)
T COG2761 138 GDEDVLADIAEEVGLDREEFKADLASDAAKDAVRQDEAAAQ----EMGIRGVPTFVF---DGKY--AVSGAQPYDVLEDA 208 (225)
T ss_pred CcHHHHHHHHHHhCCCHHHHHHHHhChHHHHHHHHHHHHHH----HCCCccCceEEE---cCcE--eecCCCCHHHHHHH
Confidence 48899999999999876444211111111111222111111 116788888655 4443 34566788889999
Q ss_pred HHHhcccC
Q psy299 195 IEILGRTS 202 (240)
Q Consensus 195 L~~ll~~~ 202 (240)
|.++++..
T Consensus 209 l~~~~~~~ 216 (225)
T COG2761 209 LRQLLAEK 216 (225)
T ss_pred HHHHHhcc
Confidence 99999765
No 294
>PRK10853 putative reductase; Provisional
Probab=56.66 E-value=26 Score=26.22 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=34.1
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcc
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQ 130 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~ 130 (240)
+..|..+.|..|+..+.-|.+. |+.+..+..- ..+-+.+++++++++.|+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~-------~i~~~~~d~~----k~p~s~~eL~~~l~~~g~~ 52 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQ-------GIDYRFHDYR----VDGLDSELLQGFIDELGWE 52 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHc-------CCCcEEeehc----cCCcCHHHHHHHHHHcCHH
Confidence 3456688999999887777653 4444444321 2234889999999887754
No 295
>KOG0855|consensus
Probab=56.06 E-value=15 Score=29.54 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=41.2
Q ss_pred ccceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCccchhhh
Q psy299 165 WNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPASLIPN 235 (240)
Q Consensus 165 ~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 235 (240)
..|++.|-|+.++++..++...++ +.+..++ ..|+.|++|..-.-+.-..+||-.++.
T Consensus 146 nlPYhLLSDpk~e~ik~lGa~k~p----------~gg~~~R---sh~if~kg~~k~~ik~~~isPevsvd~ 203 (211)
T KOG0855|consen 146 NLPYHLLSDPKNEVIKDLGAPKDP----------FGGLPGR---SHYIFDKGGVKQLIKNNQISPEVSVDE 203 (211)
T ss_pred cCCeeeecCcchhHHHHhCCCCCC----------CCCcccc---eEEEEecCCeEEEEEecccCccccHHH
Confidence 348899999999998877543332 1121222 679999999988888888888766654
No 296
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=54.08 E-value=12 Score=30.44 Aligned_cols=30 Identities=17% Similarity=0.280 Sum_probs=21.4
Q ss_pred eEEEEcCCCCeee-eccCCCCccchhhhhhh
Q psy299 209 TKFIVDKNGAPVE-RHAANASPASLIPNIEK 238 (240)
Q Consensus 209 ~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 238 (240)
.+||||++|+++. .|.-....+++.+.|..
T Consensus 139 ttfLId~~G~i~~~~~~G~~~~~~L~~~I~~ 169 (181)
T PRK13728 139 TTFLVNVNTLEALPLLQGATDAAGFMARMDT 169 (181)
T ss_pred eEEEEeCCCcEEEEEEECCCCHHHHHHHHHH
Confidence 8999999999974 45555555566555544
No 297
>KOG2507|consensus
Probab=53.81 E-value=28 Score=32.05 Aligned_cols=42 Identities=19% Similarity=0.131 Sum_probs=35.7
Q ss_pred ccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCC
Q psy299 163 IKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAI 204 (240)
Q Consensus 163 v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i 204 (240)
+..+|..|+|+..|.-+.+..|....++|...|.+.+-+.+|
T Consensus 75 ~v~vPs~ffIg~sGtpLevitg~v~adeL~~~i~Kv~~~~h~ 116 (506)
T KOG2507|consen 75 YVSVPSIFFIGFSGTPLEVITGFVTADELASSIEKVWLGLHI 116 (506)
T ss_pred cccccceeeecCCCceeEEeeccccHHHHHHHHHHHHHHHHH
Confidence 344589999999999999999999999999999988776555
No 298
>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []. SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].
Probab=53.50 E-value=27 Score=27.74 Aligned_cols=65 Identities=26% Similarity=0.359 Sum_probs=44.2
Q ss_pred eecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhc
Q psy299 50 VKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKK 127 (240)
Q Consensus 50 l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~ 127 (240)
+.|+|| +++.||..|...-+ ....|+ -+...+++..+.++|..++.++.-. -+.....+.|+.+.
T Consensus 3 vsDIDG-TiT~SD~~G~i~~~-~G~d~~------h~g~~~l~~~i~~~GY~ilYlTaRp-----~~qa~~Tr~~L~~~ 67 (157)
T PF08235_consen 3 VSDIDG-TITKSDVLGHILPI-LGKDWT------HPGAAELYRKIADNGYKILYLTARP-----IGQANRTRSWLAQH 67 (157)
T ss_pred EEeccC-CcCccchhhhhhhc-cCchhh------hhcHHHHHHHHHHCCeEEEEECcCc-----HHHHHHHHHHHHHH
Confidence 568898 57888887875433 333354 5777888999999999999998541 13345556666654
No 299
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=52.95 E-value=13 Score=30.25 Aligned_cols=45 Identities=13% Similarity=0.045 Sum_probs=29.3
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccC
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAA 225 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~ 225 (240)
|.-++.|+++.+...+.-..... -+..+ ..||||++|++++.+-.
T Consensus 101 ~fpll~D~~~~ia~~ygv~~~~~--------g~~~r------~~fiID~~G~i~~~~~~ 145 (199)
T PTZ00253 101 AIPMLADKTKSIARSYGVLEEEQ--------GVAYR------GLFIIDPKGMLRQITVN 145 (199)
T ss_pred ccceEECcHhHHHHHcCCcccCC--------CceEE------EEEEECCCCEEEEEEec
Confidence 34589999998877654321110 11112 78999999999998644
No 300
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=51.25 E-value=5.1 Score=33.57 Aligned_cols=29 Identities=7% Similarity=0.032 Sum_probs=22.3
Q ss_pred CcEEEEEEecCCCCCcHHHHHHHHHHHHH
Q psy299 65 GHVLVIVNVASRCGYTGKHYKELVELDEK 93 (240)
Q Consensus 65 gk~vlv~F~atwCp~C~~~~~~L~~l~~~ 93 (240)
.....+.|...+|++|+.....+....+.
T Consensus 118 ~~~~~~~f~~~~~~~~~~a~~~~~~~~~~ 146 (244)
T COG1651 118 LVLREFPFLDPACPYCRRAAQAARCAADQ 146 (244)
T ss_pred eEEEEeecCCCCcHHHHHHHHHHHHhccc
Confidence 35666777788999999888777777664
No 301
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=50.69 E-value=92 Score=26.68 Aligned_cols=90 Identities=18% Similarity=0.329 Sum_probs=54.8
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCCCchH
Q psy299 68 LVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPL 147 (240)
Q Consensus 68 vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l 147 (240)
+|+ +.+..|+= -.-++.+..+|.++|+.+|-|.-+.. .+...+-+.+......|-+++| |..-.....-
T Consensus 55 vLL-~G~rGtGK----SSlVkall~~y~~~GLRlIev~k~~L-----~~l~~l~~~l~~~~~kFIlf~D-DLsFe~~d~~ 123 (249)
T PF05673_consen 55 VLL-WGARGTGK----SSLVKALLNEYADQGLRLIEVSKEDL-----GDLPELLDLLRDRPYKFILFCD-DLSFEEGDTE 123 (249)
T ss_pred eEE-ecCCCCCH----HHHHHHHHHHHhhcCceEEEECHHHh-----ccHHHHHHHHhcCCCCEEEEec-CCCCCCCcHH
Confidence 444 44556652 23456677888889999999975421 3455566666666777777744 3444444556
Q ss_pred HHHHhhhcCCcccccccccceEEEE
Q psy299 148 WKFLKHKQGGTLVDAIKWNFTKFIV 172 (240)
Q Consensus 148 ~~~~~~~~~~~~~~~v~~~P~~~lI 172 (240)
|+.++....| ++...|..++|
T Consensus 124 yk~LKs~LeG----gle~~P~Nvli 144 (249)
T PF05673_consen 124 YKALKSVLEG----GLEARPDNVLI 144 (249)
T ss_pred HHHHHHHhcC----ccccCCCcEEE
Confidence 7777766554 44445666655
No 302
>PF03640 Lipoprotein_15: Secreted repeat of unknown function; InterPro: IPR005297 This repeat is found in tandem in a set of lipoproteins. The alignment contains a Y-X4-D motif.
Probab=50.29 E-value=17 Score=22.74 Aligned_cols=21 Identities=29% Similarity=0.460 Sum_probs=18.8
Q ss_pred eEEEEcCCCCeeeeccCCCCc
Q psy299 209 TKFIVDKNGAPVERHAANASP 229 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~~~~~~ 229 (240)
.+.+++.+|.++++|+.|..|
T Consensus 9 G~~~~~~~G~~LY~f~~D~~~ 29 (48)
T PF03640_consen 9 GTIQVDYNGMPLYYFDKDSKP 29 (48)
T ss_pred CCEEECCCCCEEEEECCCCCC
Confidence 678999999999999999865
No 303
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=49.19 E-value=49 Score=24.28 Aligned_cols=50 Identities=18% Similarity=0.237 Sum_probs=33.6
Q ss_pred EEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcc
Q psy299 70 IVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQ 130 (240)
Q Consensus 70 v~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~ 130 (240)
..|..+.|..|+..+..|++. +..+.++-+.- ++-+.+++..+++..+..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~------~~~t~~el~~~l~~~~~~ 51 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLK------TPPTAAELRELLAKLGIS 51 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccc------CCcCHHHHHHHHHHcCCC
Confidence 356688999999877666653 22244444432 235899999999988853
No 304
>PRK13189 peroxiredoxin; Provisional
Probab=48.15 E-value=17 Score=30.33 Aligned_cols=58 Identities=14% Similarity=0.146 Sum_probs=33.7
Q ss_pred eEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCC----ccchhhhhhh
Q psy299 168 TKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANAS----PASLIPNIEK 238 (240)
Q Consensus 168 ~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~~~~~~ 238 (240)
.-++.|++|.+...+.-.. ... .-...+ ..||||++|++++.+-.+.. -++++..|++
T Consensus 100 fPllsD~~~~ia~~ygv~~-~~~------~~~~~r------~tfIID~~G~Ir~~~~~~~~~gr~~~eilr~l~a 161 (222)
T PRK13189 100 FPIIADDRGEIAKKLGMIS-PGK------GTNTVR------AVFIIDPKGIIRAILYYPQEVGRNMDEILRLVKA 161 (222)
T ss_pred eeEEEcCccHHHHHhCCCc-ccc------CCCcee------EEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHH
Confidence 3479999998776554211 100 000112 68999999999888543322 2556665544
No 305
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=47.15 E-value=34 Score=27.93 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=30.9
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEee
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs 105 (240)
++.||...|+.-...+..++++....+..|+.|+.-.
T Consensus 42 Fv~~~~~~~~~~~~li~Ni~~Lr~~~~~~giPVvyTa 78 (218)
T COG1535 42 FVSPWGENCPLMEQLIANIAKLRIWCKQAGIPVVYTA 78 (218)
T ss_pred hcCCCCCCCccHHHHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4677888888888889999999999999999988753
No 306
>PF08789 PBCV_basic_adap: PBCV-specific basic adaptor domain; InterPro: IPR014897 The small PBCV-specific basic adaptor protein is found fused to S/T protein kinases and the 2-Cysteine domain [].
Probab=46.64 E-value=40 Score=20.27 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=20.3
Q ss_pred EcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeee
Q psy299 172 VDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVER 222 (240)
Q Consensus 172 ID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~ 222 (240)
+|..|+++++.... .+||++..|+=|+-
T Consensus 4 vdakgR~i~~g~rG-----------------------g~yV~~~~GKKvyv 31 (40)
T PF08789_consen 4 VDAKGRKIFKGPRG-----------------------GTYVISDGGKKVYV 31 (40)
T ss_pred ccCcCCEEEECCCC-----------------------CEEEeCCCCcEEee
Confidence 47788888776443 68899988876654
No 307
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=45.39 E-value=60 Score=24.59 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=32.8
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcC
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKN 128 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~ 128 (240)
+..|..+.|..|+.....|.+. |+.+-.+..- .++-+.++++++++..+
T Consensus 3 i~iY~~p~Cst~RKA~~~L~~~-------gi~~~~~d~~----~~p~t~~eL~~~l~~~g 51 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALKAS-------GHDVEVQDIL----KEPWHADTLRPYFGNKP 51 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-------CCCcEEEecc----CCCcCHHHHHHHHHHcC
Confidence 4556788999999877766653 4444443321 22358999999998765
No 308
>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.
Probab=44.94 E-value=15 Score=24.63 Aligned_cols=42 Identities=19% Similarity=0.298 Sum_probs=25.2
Q ss_pred EEEEcCCCCeEEeccCCCC-ccchHHHHHHhcccCCCCcceeEEEEc
Q psy299 169 KFIVDKNGVPVERHAANAS-PASLIPHIEILGRTSAIKWNFTKFIVD 214 (240)
Q Consensus 169 ~~lID~~G~Iv~~~~~~~~-~~~l~~~L~~ll~~~~i~~~~~~~~i~ 214 (240)
.|.||++|++.....-... ...|.++..+.++. |.|.-...+
T Consensus 21 ~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~----~~~~p~~~~ 63 (79)
T PF03544_consen 21 EFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKK----WRFKPAPKN 63 (79)
T ss_dssp EEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC-----EE-TT--C
T ss_pred EEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHh----CCCCCCCcC
Confidence 4899999999875433222 33488888887776 455444433
No 309
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=44.65 E-value=56 Score=28.33 Aligned_cols=76 Identities=17% Similarity=0.236 Sum_probs=45.8
Q ss_pred CcccCCeEeecCCCCcccCCCCCC-cEEEEEEecCCCCCcHHHHHHHHHHHHHHhh--cCcEEEEeecCCCCCCCCCCHH
Q psy299 42 AETVYDFTVKNIKGEDVPLSTYKG-HVLVIVNVASRCGYTGKHYKELVELDEKFRD--RGLRILAFPCNQFGGQEPGDAD 118 (240)
Q Consensus 42 g~~~p~f~l~d~~G~~v~ls~~~g-k~vlv~F~atwCp~C~~~~~~L~~l~~~~~~--~~v~vi~Vs~D~~~~~~~~~~e 118 (240)
=..+|.|++.|.+|.++-.+.-.| +.+-++|. --...-..|+++++.-.+ .+++|+.|+++
T Consensus 79 L~~VPVFtItn~~G~pvl~s~~~~~~~~gvf~s-----~qedA~afL~~lk~~~p~l~~~~kV~pvsL~----------- 142 (270)
T TIGR00995 79 LAGTSVFTVSNAQNEFVLASDNDGEKSIGLLCF-----RQEDAEAFLAQLRKRKPEVGSQAKVVPITLD----------- 142 (270)
T ss_pred hcCCceEEEEcCCCCeEEEECCCCCceEEEEEC-----CHHHHHHHHHHHHhhCccccCCceEEEEEHH-----------
Confidence 358899999999999987765544 55554332 111123444444444332 36999999876
Q ss_pred HHHHHHHhcCcceeee
Q psy299 119 QICEFTKKKNVQFDLF 134 (240)
Q Consensus 119 ~~~~~~~~~~~~fp~~ 134 (240)
.+-++ ++.++.|.++
T Consensus 143 ~vYkl-~~e~l~F~fi 157 (270)
T TIGR00995 143 QVYKL-KVEGIGFRFL 157 (270)
T ss_pred HHHHH-hhcCccEEEe
Confidence 22233 3455777776
No 310
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=43.92 E-value=16 Score=37.83 Aligned_cols=30 Identities=20% Similarity=0.207 Sum_probs=24.5
Q ss_pred eEEEEcCCCCeeeeccCCCCccchhhhhhh
Q psy299 209 TKFIVDKNGAPVERHAANASPASLIPNIEK 238 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (240)
..+|||++|+++.|+.-....+++.+.|++
T Consensus 505 t~ilid~~G~iv~~~~G~~~~~~l~~~l~~ 534 (1057)
T PLN02919 505 TFAVVSPNGKLIAQLSGEGHRKDLDDLVEA 534 (1057)
T ss_pred eEEEECCCCeEEEEEecccCHHHHHHHHHH
Confidence 679999999999998777777777666665
No 311
>PRK03996 proteasome subunit alpha; Provisional
Probab=43.51 E-value=80 Score=26.43 Aligned_cols=56 Identities=13% Similarity=0.051 Sum_probs=34.0
Q ss_pred ceEEEEcCCCCeEEec-------------------cCCCCccc----hHHHHHHhcccCCCCcceeEEEEcCCCCeeee
Q psy299 167 FTKFIVDKNGVPVERH-------------------AANASPAS----LIPHIEILGRTSAIKWNFTKFIVDKNGAPVER 222 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~-------------------~~~~~~~~----l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~ 222 (240)
|..|.+|+.|...... ....+.++ +...|+...+...-.++++-.+|+++|...++
T Consensus 148 p~Ly~id~~G~~~~~~~~a~G~g~~~~~~~Le~~~~~~~s~eeai~l~~~al~~~~~~~~~~~~i~i~ii~~~~~~~~~ 226 (241)
T PRK03996 148 PRLFETDPSGAYLEYKATAIGAGRDTVMEFLEKNYKEDLSLEEAIELALKALAKANEGKLDPENVEIAYIDVETKKFRK 226 (241)
T ss_pred CEEEEECCCCCeecceEEEECCCcHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhccCCCCCcEEEEEEECCCCcEEE
Confidence 6789999999776532 11111122 23334444443334789999999999885443
No 312
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=41.84 E-value=91 Score=23.09 Aligned_cols=14 Identities=21% Similarity=0.109 Sum_probs=7.6
Q ss_pred HHHHHHHHHhcCcc
Q psy299 117 ADQICEFTKKKNVQ 130 (240)
Q Consensus 117 ~e~~~~~~~~~~~~ 130 (240)
...+.+.++..|..
T Consensus 99 ~~~~~~~l~~~g~~ 112 (140)
T TIGR01753 99 VDDWEERLKEAGAT 112 (140)
T ss_pred HHHHHHHHHHCCCE
Confidence 34555666555544
No 313
>COG3054 Predicted transcriptional regulator [General function prediction only]
Probab=40.62 E-value=42 Score=26.59 Aligned_cols=142 Identities=13% Similarity=0.193 Sum_probs=68.8
Q ss_pred ccccCCcccCCeEeec-----CCCCc-----ccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHH-HhhcCcEEE-Ee
Q psy299 37 DSWKNAETVYDFTVKN-----IKGED-----VPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEK-FRDRGLRIL-AF 104 (240)
Q Consensus 37 ~~~~~g~~~p~f~l~d-----~~G~~-----v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~-~~~~~v~vi-~V 104 (240)
..+..|+++|.+.+.+ .+|+. ...+++-||+-+|...|.-...-.+-.+-+..+... +....+.-- -|
T Consensus 21 Hnlq~~q~vp~VgV~~~GEl~l~~~~~~y~~W~SAqL~GKvRV~~hiAGRtsaKE~Na~lieaIk~a~fp~~~YQTTTIi 100 (184)
T COG3054 21 HNLQLGQRVPPVGVADRGELVLDKDQFSYKTWNSAQLVGKVRVLQHIAGRTSAKEKNATLIEAIKSAKFPHDRYQTTTII 100 (184)
T ss_pred hhcccCCcCCCccccccceEEecCcceeecccchhhccchhhhhhhhhcccchhhhchHHHHHHHhccCChHHceeeEEe
Confidence 3456777777766543 23333 344557799988888766554333333334333322 221112221 23
Q ss_pred ecCCCCCCCCCCHHHHHHHHHhcCcceeeeEe-eecCCCCCchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEecc
Q psy299 105 PCNQFGGQEPGDADQICEFTKKKNVQFDLFEK-INVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHA 183 (240)
Q Consensus 105 s~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~-~d~~~~~~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~ 183 (240)
+.|+ ...++-.-.+.-++...=.||+-.. .|.+| .....++.- +.. ...+++|++|++.+...
T Consensus 101 N~DD---Ai~GtgmFVkssae~~Kke~pwSq~vlD~~g-vak~AWqL~-e~~-----------SaivVlDk~G~Vkfvke 164 (184)
T COG3054 101 NTDD---AIPGTGMFVKSSAESNKKEYPWSQFVLDSNG-VAKNAWQLK-EES-----------SAVVVLDKDGRVKFVKE 164 (184)
T ss_pred ccCC---ccccccceeecchhhccccCCceeeEEccch-hhhhhhccc-ccc-----------ceEEEEcCCCcEEEEec
Confidence 3332 1112222333333332223332211 45555 333233321 111 24589999999999999
Q ss_pred CCCCccchHHH
Q psy299 184 ANASPASLIPH 194 (240)
Q Consensus 184 ~~~~~~~l~~~ 194 (240)
|..+..++.+-
T Consensus 165 GaLt~aevQ~V 175 (184)
T COG3054 165 GALTQAEVQQV 175 (184)
T ss_pred CCccHHHHHHH
Confidence 98887664433
No 314
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=39.65 E-value=1.4e+02 Score=27.22 Aligned_cols=58 Identities=10% Similarity=0.240 Sum_probs=35.2
Q ss_pred CCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhc--CcEEEEeecCCCCCCCCCCHHHHHHHHH------------hcC
Q psy299 63 YKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR--GLRILAFPCNQFGGQEPGDADQICEFTK------------KKN 128 (240)
Q Consensus 63 ~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~--~v~vi~Vs~D~~~~~~~~~~e~~~~~~~------------~~~ 128 (240)
..|+|+||+|- +++.+++..+.|+.+ ...+.+|+.. +.+..|.++.|-+ +.|
T Consensus 303 ~~~~P~liF~p---------~I~~~eq~a~~lk~~~~~~~i~~Vhs~-----d~~R~EkV~~fR~G~~~lLiTTTILERG 368 (441)
T COG4098 303 KTGRPVLIFFP---------EIETMEQVAAALKKKLPKETIASVHSE-----DQHRKEKVEAFRDGKITLLITTTILERG 368 (441)
T ss_pred hcCCcEEEEec---------chHHHHHHHHHHHhhCCccceeeeecc-----CccHHHHHHHHHcCceEEEEEeehhhcc
Confidence 45789988883 566666666666443 3455566543 2345566666644 567
Q ss_pred cceeee
Q psy299 129 VQFDLF 134 (240)
Q Consensus 129 ~~fp~~ 134 (240)
++||.+
T Consensus 369 VTfp~v 374 (441)
T COG4098 369 VTFPNV 374 (441)
T ss_pred cccccc
Confidence 777655
No 315
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=39.32 E-value=95 Score=24.21 Aligned_cols=46 Identities=11% Similarity=0.326 Sum_probs=31.1
Q ss_pred EEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcce
Q psy299 68 LVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQF 131 (240)
Q Consensus 68 vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~f 131 (240)
-+++|..+.|+-|..-+. .++.+|+.|=.+..| +...+++ +++++.
T Consensus 27 ~~~vyksPnCGCC~~w~~-------~mk~~Gf~Vk~~~~~--------d~~alK~---~~gIp~ 72 (149)
T COG3019 27 EMVVYKSPNCGCCDEWAQ-------HMKANGFEVKVVETD--------DFLALKR---RLGIPY 72 (149)
T ss_pred eEEEEeCCCCccHHHHHH-------HHHhCCcEEEEeecC--------cHHHHHH---hcCCCh
Confidence 367777999999985544 445568988777655 5555554 366654
No 316
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=38.61 E-value=28 Score=24.87 Aligned_cols=30 Identities=23% Similarity=0.509 Sum_probs=24.3
Q ss_pred eEEEEcCCCCeeeeccCCCCccchhhhhhhc
Q psy299 209 TKFIVDKNGAPVERHAANASPASLIPNIEKY 239 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
=+|++-++|+.+.++.- ..|+++...|.+|
T Consensus 73 Pt~~~~~~G~~v~~~~G-~~~~~l~~~~~~~ 102 (103)
T cd02985 73 PHFLFYKDGEKIHEEEG-IGPDELIGDVLYY 102 (103)
T ss_pred CEEEEEeCCeEEEEEeC-CCHHHHHHHHHhc
Confidence 46888899999999876 6688888887654
No 317
>KOG3363|consensus
Probab=37.60 E-value=2e+02 Score=23.11 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=52.5
Q ss_pred cCCCCCcHHHH-HHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHHh
Q psy299 74 ASRCGYTGKHY-KELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLK 152 (240)
Q Consensus 74 atwCp~C~~~~-~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~~ 152 (240)
-+|.+..-..+ +.=-.+.+.++.+ ++++-|.+.+.. +++.-...+.+|.+++++...++. ..++..
T Consensus 87 lSW~v~~fedIt~dSLslF~tlePk-idlLIvG~Gd~~-~p~~v~~~V~~F~k~~ki~lEi~d-----te~A~a------ 153 (196)
T KOG3363|consen 87 LSWSVRTFEDITTDSLSLFQTLEPK-IDLLIVGCGDKK-HPDKVRPSVRQFVKSHKIKLEIVD-----TENAAA------ 153 (196)
T ss_pred eeccCCChhhcCcchHhHhhhcCCC-ccEEEEecCCcC-CchhcCHHHHHHHHHhCcceEEec-----chhhhh------
Confidence 46776544432 2222344455544 444444443222 222234678999999999998871 222111
Q ss_pred hhcCCcccccccccceEEEEcCCCCeEEec--cCCCCccchHHHHHHhccc
Q psy299 153 HKQGGTLVDAIKWNFTKFIVDKNGVPVERH--AANASPASLIPHIEILGRT 201 (240)
Q Consensus 153 ~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~--~~~~~~~~l~~~L~~ll~~ 201 (240)
++=+++.+|++|... .+....+.=...+..+|++
T Consensus 154 ---------------TfNfLNaEgR~VaaAL~Pp~v~s~~e~~~~~a~lk~ 189 (196)
T KOG3363|consen 154 ---------------TFNFLNAEGRYVAAALLPPGVTSDKEYGRALALLKG 189 (196)
T ss_pred ---------------HhhhccccccEEEEEecCCcccccchhhHHHHHhhc
Confidence 224889999999744 2333333333334445554
No 318
>COG3411 Ferredoxin [Energy production and conversion]
Probab=36.94 E-value=49 Score=22.09 Aligned_cols=31 Identities=10% Similarity=-0.036 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccC
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILGRTS 202 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~ 202 (240)
|.. ++=++| .|+...+++...+-++..|.++
T Consensus 18 Pvl-~vYpeg----vWY~~V~p~~a~rIv~~hl~~G 48 (64)
T COG3411 18 PVL-VVYPEG----VWYTRVDPEDARRIVQSHLLGG 48 (64)
T ss_pred CEE-EEecCC----eeEeccCHHHHHHHHHHHHhCC
Confidence 444 444888 5666789999999999988774
No 319
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=36.37 E-value=36 Score=26.11 Aligned_cols=31 Identities=13% Similarity=0.206 Sum_probs=23.0
Q ss_pred eEEEEcCCCCeeeeccCCCCccchhhhhhhc
Q psy299 209 TKFIVDKNGAPVERHAANASPASLIPNIEKY 239 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (240)
..+++|++|+++.++.-....+++...|+.+
T Consensus 79 t~v~~~~~G~~v~~~~G~~~~~~l~~~l~~l 109 (142)
T cd02950 79 HFVFLDREGNEEGQSIGLQPKQVLAQNLDAL 109 (142)
T ss_pred EEEEECCCCCEEEEEeCCCCHHHHHHHHHHH
Confidence 5578899999999987655556666666653
No 320
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=36.14 E-value=1.7e+02 Score=25.32 Aligned_cols=74 Identities=18% Similarity=0.307 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHH---HHhcCcceeeeEeeecCCCCCchHHHHHhhhcCCccccc
Q psy299 86 ELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEF---TKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDA 162 (240)
Q Consensus 86 ~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~---~~~~~~~fp~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~ 162 (240)
-++++..+|.++|..+|-|+-+ +...+... ++...-.|-+++| |..-+.-...|+.++....| +
T Consensus 101 LVKA~~~e~~~~glrLVEV~k~--------dl~~Lp~l~~~Lr~~~~kFIlFcD-DLSFe~gd~~yK~LKs~LeG----~ 167 (287)
T COG2607 101 LVKALLNEYADEGLRLVEVDKE--------DLATLPDLVELLRARPEKFILFCD-DLSFEEGDDAYKALKSALEG----G 167 (287)
T ss_pred HHHHHHHHHHhcCCeEEEEcHH--------HHhhHHHHHHHHhcCCceEEEEec-CCCCCCCchHHHHHHHHhcC----C
Confidence 4667788888889999988643 34444444 3445556666643 33333444567777776654 4
Q ss_pred ccccceEEEE
Q psy299 163 IKWNFTKFIV 172 (240)
Q Consensus 163 v~~~P~~~lI 172 (240)
+..-|..+|+
T Consensus 168 ve~rP~NVl~ 177 (287)
T COG2607 168 VEGRPANVLF 177 (287)
T ss_pred cccCCCeEEE
Confidence 5555666655
No 321
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=35.63 E-value=78 Score=24.61 Aligned_cols=52 Identities=29% Similarity=0.285 Sum_probs=32.3
Q ss_pred eEEEEcCCCCeEE-ec-cCCCCccc--hHHHHHHhcccCCCC-cceeEEEEcCCCCeeee
Q psy299 168 TKFIVDKNGVPVE-RH-AANASPAS--LIPHIEILGRTSAIK-WNFTKFIVDKNGAPVER 222 (240)
Q Consensus 168 ~~~lID~~G~Iv~-~~-~~~~~~~~--l~~~L~~ll~~~~i~-~~~~~~~i~~~~~~~~~ 222 (240)
..++++++|+++- .| .+...++. +..++-.++..+.++ .||..+ ++-++|+|
T Consensus 4 ~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lIs~R~~ke~N~~e~---k~~kiVYr 60 (152)
T COG5030 4 FVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELISARKPKESNFIEG---KNEKIVYR 60 (152)
T ss_pred EEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHHHcCCchhcccccc---cCcEEEee
Confidence 3479999998875 33 33333433 788887777666554 355443 22278877
No 322
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=35.35 E-value=1.6e+02 Score=23.30 Aligned_cols=36 Identities=14% Similarity=0.091 Sum_probs=25.8
Q ss_pred EecCCCCCcHHHHHHHHHHHHHHhh---cCcEEEEeecC
Q psy299 72 NVASRCGYTGKHYKELVELDEKFRD---RGLRILAFPCN 107 (240)
Q Consensus 72 F~atwCp~C~~~~~~L~~l~~~~~~---~~v~vi~Vs~D 107 (240)
|+-.-||.|-...+.|.++.++++. -.+....+.++
T Consensus 4 ~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~~L~ 42 (201)
T cd03024 4 WSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPFELN 42 (201)
T ss_pred EecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeeeeeC
Confidence 4455699999999999999999963 23444455444
No 323
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=35.18 E-value=1.7e+02 Score=28.34 Aligned_cols=43 Identities=14% Similarity=0.050 Sum_probs=34.7
Q ss_pred cEEEEEEecCCCCCcHHHHHHHHHHHHHH-hhcCcEEEEeecCC
Q psy299 66 HVLVIVNVASRCGYTGKHYKELVELDEKF-RDRGLRILAFPCNQ 108 (240)
Q Consensus 66 k~vlv~F~atwCp~C~~~~~~L~~l~~~~-~~~~v~vi~Vs~D~ 108 (240)
-..+|.|.||..=.-++.+|.|-.++..- -.+++.||++.-..
T Consensus 88 ~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~ 131 (573)
T PLN02640 88 TLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTK 131 (573)
T ss_pred CeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCC
Confidence 47899999999988999999999998652 22379999998653
No 324
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=35.09 E-value=80 Score=22.91 Aligned_cols=49 Identities=20% Similarity=0.194 Sum_probs=29.1
Q ss_pred EecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcce
Q psy299 72 NVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQF 131 (240)
Q Consensus 72 F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~f 131 (240)
|..+.|..|+..+..|++ +|+.+-.+..- ..+-+.+++.++++..+..+
T Consensus 1 Y~~~~C~t~rka~~~L~~-------~gi~~~~~d~~----k~p~s~~el~~~l~~~~~~~ 49 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEE-------NGIEYEFIDYK----KEPLSREELRELLSKLGNGP 49 (110)
T ss_dssp EE-TT-HHHHHHHHHHHH-------TT--EEEEETT----TS---HHHHHHHHHHHTSSG
T ss_pred CcCCCCHHHHHHHHHHHH-------cCCCeEeehhh----hCCCCHHHHHHHHHHhcccH
Confidence 345778888877766654 45666555543 23458999999999888554
No 325
>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.81 E-value=92 Score=25.61 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=29.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCC---CCHHHHHHHHHhcCcce
Q psy299 75 SRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEP---GDADQICEFTKKKNVQF 131 (240)
Q Consensus 75 twCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~---~~~e~~~~~~~~~~~~f 131 (240)
++|.+|.. ..|..+.+. |++++..=-|+...+.. -..++.+++++.+|++|
T Consensus 10 ~CCAPcs~--y~le~l~~~----~~~i~~yFYNPNIhP~~EY~~R~~e~~~f~~~~~i~~ 63 (204)
T COG1636 10 SCCAPCSG--YVLEKLRDS----GIKITIYFYNPNIHPLSEYELRKEEVKRFAEKFGINF 63 (204)
T ss_pred eecCCCcH--HHHHHHHhc----CcceEEEEeCCCCCchHHHHHHHHHHHHHHHHcCCee
Confidence 68999984 445555444 44453333333333322 12357788999999876
No 326
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=34.17 E-value=99 Score=26.24 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhcCcEEEEeecCC
Q psy299 84 YKELVELDEKFRDRGLRILAFPCNQ 108 (240)
Q Consensus 84 ~~~L~~l~~~~~~~~v~vi~Vs~D~ 108 (240)
...|.++..++.+.|+.|++|.+|.
T Consensus 195 ~~~l~~iI~~l~~~g~~VvAivsD~ 219 (236)
T PF12017_consen 195 ADILKNIIEKLHEIGYNVVAIVSDM 219 (236)
T ss_pred HHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4566778888999999999999983
No 327
>PRK14324 glmM phosphoglucosamine mutase; Provisional
Probab=33.74 E-value=2.6e+02 Score=25.79 Aligned_cols=37 Identities=8% Similarity=0.100 Sum_probs=21.5
Q ss_pred CcEEEEeecCCCCC-----CCCCCHHHHHHHHHhcCcceeee
Q psy299 98 GLRILAFPCNQFGG-----QEPGDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 98 ~v~vi~Vs~D~~~~-----~~~~~~e~~~~~~~~~~~~fp~~ 134 (240)
|+.++.+..+..+. ....+++.+++.+++.+.++-+.
T Consensus 199 G~~v~~i~~~~dg~~~~~~~~~~~~e~l~~~v~~~~adlGia 240 (446)
T PRK14324 199 GADVIVINDEPNGFNINENCGALHPENLAQEVKRYRADIGFA 240 (446)
T ss_pred CCeEEEECCCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEE
Confidence 56666665542211 11236677777777777776655
No 328
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=33.71 E-value=39 Score=24.51 Aligned_cols=30 Identities=20% Similarity=0.395 Sum_probs=26.0
Q ss_pred eEEEEcC-CCCeeeeccCCCCccchhhhhhh
Q psy299 209 TKFIVDK-NGAPVERHAANASPASLIPNIEK 238 (240)
Q Consensus 209 ~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~ 238 (240)
.-.+||+ +|.++++..-...|++++..|+.
T Consensus 79 ~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~ 109 (114)
T cd02958 79 HIAIIDPRTGEVLKVWSGNITPEDLLSQLIE 109 (114)
T ss_pred eEEEEeCccCcEeEEEcCCCCHHHHHHHHHH
Confidence 4567899 89999999999999999888875
No 329
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=33.53 E-value=21 Score=27.82 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=16.1
Q ss_pred eEEEEcCCCCeeeeccCCCC
Q psy299 209 TKFIVDKNGAPVERHAANAS 228 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~~~~~ 228 (240)
..||||++|+++.+=+....
T Consensus 115 t~vlId~~G~Vv~~~~~~~i 134 (146)
T cd03008 115 TVVVLKPDGDVLAANAVDEI 134 (146)
T ss_pred EEEEECCCCcEEeeChHHHH
Confidence 78999999999998554433
No 330
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=33.30 E-value=28 Score=27.75 Aligned_cols=18 Identities=11% Similarity=0.113 Sum_probs=14.5
Q ss_pred eeEEEEcCCCCeeeeccC
Q psy299 208 FTKFIVDKNGAPVERHAA 225 (240)
Q Consensus 208 ~~~~~i~~~~~~~~~~~~ 225 (240)
-.-||||++|+++..|..
T Consensus 156 ~~~~Lidp~G~i~~~y~~ 173 (174)
T PF02630_consen 156 AFIYLIDPDGRIRAIYNL 173 (174)
T ss_dssp SEEEEE-TTSEEEEEECS
T ss_pred cEEEEEcCCCcEEEEEcc
Confidence 378999999999999864
No 331
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=32.99 E-value=53 Score=25.97 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=27.4
Q ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHhh-cCcEEEEeec
Q psy299 69 VIVNVASRCGYTGKHYKELVELDEKFRD-RGLRILAFPC 106 (240)
Q Consensus 69 lv~F~atwCp~C~~~~~~L~~l~~~~~~-~~v~vi~Vs~ 106 (240)
+..|+-..||.|-...+.|.++.++++. ..+......+
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~~~~~v~~~~~~L 41 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYGGGIEVELHLGGL 41 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhCCCceEEEEeccc
Confidence 4566778899999999999999999842 2344344444
No 332
>PF01106 NifU: NifU-like domain; InterPro: IPR001075 Iron-sulphur (FeS) clusters are important cofactors for numerous proteins involved in electron transfer, in redox and non-redox catalysis, in gene regulation, and as sensors of oxygen and iron. These functions depend on the various FeS cluster prosthetic groups, the most common being [2Fe-2S] and [4Fe-4S] []. FeS cluster assembly is a complex process involving the mobilisation of Fe and S atoms from storage sources, their assembly into [Fe-S] form, their transport to specific cellular locations, and their transfer to recipient apoproteins. So far, three FeS assembly machineries have been identified, which are capable of synthesising all types of [Fe-S] clusters: ISC (iron-sulphur cluster), SUF (sulphur assimilation), and NIF (nitrogen fixation) systems. The ISC system is conserved in eubacteria and eukaryotes (mitochondria), and has broad specificity, targeting general FeS proteins [, ]. It is encoded by the isc operon (iscRSUA-hscBA-fdx-iscX). IscS is a cysteine desulphurase, which obtains S from cysteine (converting it to alanine) and serves as a S donor for FeS cluster assembly. IscU and IscA act as scaffolds to accept S and Fe atoms, assembling clusters and transfering them to recipient apoproteins. HscA is a molecular chaperone and HscB is a co-chaperone. Fdx is a [2Fe-2S]-type ferredoxin. IscR is a transcription factor that regulates expression of the isc operon. IscX (also known as YfhJ) appears to interact with IscS and may function as an Fe donor during cluster assembly []. The SUF system is an alternative pathway to the ISC system that operates under iron starvation and oxidative stress. It is found in eubacteria, archaea and eukaryotes (plastids). The SUF system is encoded by the suf operon (sufABCDSE), and the six encoded proteins are arranged into two complexes (SufSE and SufBCD) and one protein (SufA). SufS is a pyridoxal-phosphate (PLP) protein displaying cysteine desulphurase activity. SufE acts as a scaffold protein that accepts S from SufS and donates it to SufA []. SufC is an ATPase with an unorthodox ATP-binding cassette (ABC)-like component. No specific functions have been assigned to SufB and SufD. SufA is homologous to IscA [], acting as a scaffold protein in which Fe and S atoms are assembled into [FeS] cluster forms, which can then easily be transferred to apoproteins targets. In the NIF system, NifS and NifU are required for the formation of metalloclusters of nitrogenase in Azotobacter vinelandii, and other organisms, as well as in the maturation of other FeS proteins. Nitrogenase catalyses the fixation of nitrogen. It contains a complex cluster, the FeMo cofactor, which contains molybdenum, Fe and S. NifS is a cysteine desulphurase. NifU binds one Fe atom at its N-terminal, assembling an FeS cluster that is transferred to nitrogenase apoproteins []. Nif proteins involved in the formation of FeS clusters can also be found in organisms that do not fix nitrogen []. This entry represents the C-terminal of NifU and homologous proteins. NifU contains two domains: an N-terminal (IPR002871 from INTERPRO) and a C-terminal domain []. These domains exist either together or on different polypeptides, both domains being found in organisms that do not fix nitrogen (e.g. yeast), so they have a broader significance in the cell than nitrogen fixation. ; GO: 0005506 iron ion binding, 0051536 iron-sulfur cluster binding, 0016226 iron-sulfur cluster assembly; PDB: 2JNV_A 2Z51_A 1TH5_A 1VEH_A 1XHJ_A.
Probab=32.93 E-value=88 Score=20.87 Aligned_cols=34 Identities=21% Similarity=0.204 Sum_probs=22.8
Q ss_pred CCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHH
Q psy299 53 IKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKEL 87 (240)
Q Consensus 53 ~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L 87 (240)
.+|-.+.+-++++..+.|.|- -.|..|....-.|
T Consensus 14 ~dGGdv~lv~v~~~~V~V~l~-GaC~gC~~s~~Tl 47 (68)
T PF01106_consen 14 SDGGDVELVDVDDGVVYVRLT-GACSGCPSSDMTL 47 (68)
T ss_dssp HTTEEEEEEEEETTEEEEEEE-SSCCSSCCHHHHH
T ss_pred hcCCcEEEEEecCCEEEEEEE-eCCCCCCCHHHHH
Confidence 467777787787777777774 4465666555555
No 333
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=32.58 E-value=46 Score=21.75 Aligned_cols=30 Identities=13% Similarity=0.178 Sum_probs=18.1
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEee
Q psy299 71 VNVASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105 (240)
Q Consensus 71 ~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs 105 (240)
.|...|||.|.+..-.|.+. +..++++-+.
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~ 32 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-----GITVELREVE 32 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-----CCCcEEEEeC
Confidence 45678999998765555442 2235555554
No 334
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=32.32 E-value=54 Score=19.06 Aligned_cols=20 Identities=5% Similarity=0.081 Sum_probs=17.0
Q ss_pred CCCHHHHHHHHHhcCcceee
Q psy299 114 PGDADQICEFTKKKNVQFDL 133 (240)
Q Consensus 114 ~~~~e~~~~~~~~~~~~fp~ 133 (240)
.++.+.++++++.+|+.++-
T Consensus 3 tWs~~~L~~wL~~~gi~~~~ 22 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIPVPK 22 (38)
T ss_pred CCCHHHHHHHHHHcCCCCCC
Confidence 47889999999999998753
No 335
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=32.16 E-value=46 Score=29.27 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=13.8
Q ss_pred cCCCCCcHHHHHHHHHHHHHHhh
Q psy299 74 ASRCGYTGKHYKELVELDEKFRD 96 (240)
Q Consensus 74 atwCp~C~~~~~~L~~l~~~~~~ 96 (240)
.+|||.|- ....++.+.+.+.+
T Consensus 18 ~~~CpGCg-~~~i~~~i~~al~~ 39 (301)
T PRK05778 18 TTWCPGCG-NFGILNAIIQALAE 39 (301)
T ss_pred CCCCCCCC-ChHHHHHHHHHHHH
Confidence 46999998 44455555555544
No 336
>TIGR01686 FkbH FkbH-like domain. The C-terminal portion of this domain is unique to this family (by BLAST).
Probab=31.91 E-value=3.5e+02 Score=23.63 Aligned_cols=36 Identities=19% Similarity=0.213 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHh
Q psy299 83 HYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKK 126 (240)
Q Consensus 83 ~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~ 126 (240)
..+.++++.++++++|+.+..+|-+ +.+...+..+.
T Consensus 32 ~~~~~~e~L~~L~~~Gi~lai~S~n--------~~~~a~~~l~~ 67 (320)
T TIGR01686 32 LHKTLQEKIKTLKKQGFLLALASKN--------DEDDAKKVFER 67 (320)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEcCC--------CHHHHHHHHHh
Confidence 3688999999999999888777643 56677777776
No 337
>cd03084 phosphohexomutase The alpha-D-phosphohexomutase superfamily includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this family include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). These enzymes play important and diverse roles in carbohydrate metabolism in organisms from bacteria to humans. Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=31.91 E-value=2.7e+02 Score=24.70 Aligned_cols=21 Identities=10% Similarity=0.158 Sum_probs=13.2
Q ss_pred CCCCeeeeccCCCCccchhhh
Q psy299 215 KNGAPVERHAANASPASLIPN 235 (240)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ 235 (240)
++|++|....++-+.+.+.+.
T Consensus 217 ~~~~vv~~v~ss~~i~~ia~~ 237 (355)
T cd03084 217 PRGGVVKTVVSSGALDKVAKK 237 (355)
T ss_pred CCCCEEEEccchHHHHHHHHH
Confidence 466777776666665555554
No 338
>PF14427 Pput2613-deam: Pput_2613-like deaminase
Probab=31.89 E-value=70 Score=23.81 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=29.7
Q ss_pred cccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEe
Q psy299 57 DVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAF 104 (240)
Q Consensus 57 ~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~V 104 (240)
.+.+++..|..++|.=-.+=|+.|+-.|....+ +.|..|+..
T Consensus 58 ~l~~~~~~Gd~m~I~G~ypPC~~CkG~Mr~~s~------~~g~~I~Y~ 99 (118)
T PF14427_consen 58 DLPLNQVPGDRMLIDGQYPPCNSCKGKMRRASE------KSGATIQYT 99 (118)
T ss_pred hcCccccCCceEEEeeecCCCchhHHHHHHhhh------ccCcEEEEe
Confidence 345566679999999888899999977765433 235666654
No 339
>PF04723 GRDA: Glycine reductase complex selenoprotein A; InterPro: IPR006812 Found in clostridia, this protein contains one active site selenocysteine and catalyses the reductive deamination of glycine, which is coupled to the esterification of orthophosphate resulting in the formation of ATP []. A member of this family may also exist in Treponema denticola [].; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=31.62 E-value=44 Score=25.88 Aligned_cols=40 Identities=15% Similarity=0.210 Sum_probs=30.2
Q ss_pred EEEEEecCCCCCcHHH-------HHHHHHHHHHHhhcCcEEEEeecC
Q psy299 68 LVIVNVASRCGYTGKH-------YKELVELDEKFRDRGLRILAFPCN 107 (240)
Q Consensus 68 vlv~F~atwCp~C~~~-------~~~L~~l~~~~~~~~v~vi~Vs~D 107 (240)
.=|.|-+|.|-.|... ...++++.++|...|+.|+.=+.|
T Consensus 31 aevvfs~TeCFVctaagaMDLEnQ~rvk~~aEk~g~enlvVvlG~ae 77 (150)
T PF04723_consen 31 AEVVFSSTECFVCTAAGAMDLENQQRVKDLAEKYGAENLVVVLGAAE 77 (150)
T ss_pred ceEEEEeeeEEEecccccccHHHHHHHHHHHHhcCCccEEEEecCCC
Confidence 3467889999999863 578888889988887777665533
No 340
>KOG2961|consensus
Probab=31.45 E-value=2.7e+02 Score=22.25 Aligned_cols=102 Identities=7% Similarity=0.081 Sum_probs=55.5
Q ss_pred ccCCeEeecCCCCcccCCCCCC-cEEEEEEecCCC---C----CcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCC
Q psy299 44 TVYDFTVKNIKGEDVPLSTYKG-HVLVIVNVASRC---G----YTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPG 115 (240)
Q Consensus 44 ~~p~f~l~d~~G~~v~ls~~~g-k~vlv~F~atwC---p----~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~ 115 (240)
-.|..++++..--+....+++| |.++++ -..| | .-..++|.+++.+..|.++++.+++=|.... ..+.
T Consensus 21 ~~Ph~~vptf~~ip~~I~~~~~ikavVlD--KDNcit~P~~~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~--~~D~ 96 (190)
T KOG2961|consen 21 VLPHVSVPTFRYIPWEILKRKGIKAVVLD--KDNCITAPYSLAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLT--EYDH 96 (190)
T ss_pred eccccccCccccCCcchhhccCceEEEEc--CCCeeeCCcccccCchhHHHHHHHHHHhCcccEEEEecCcCcc--ccCC
Confidence 3444444444444555555556 455443 3445 2 3556789999999999988787777654311 1122
Q ss_pred CHHHHHHHHHhcCcceeeeEeeecCCCCCchHHHHH
Q psy299 116 DADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFL 151 (240)
Q Consensus 116 ~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~~~~ 151 (240)
+.+..+.+-++.|+ |++.-.-.+..-..+.+.+.
T Consensus 97 d~s~Ak~le~k~gI--pVlRHs~kKP~ct~E~~~y~ 130 (190)
T KOG2961|consen 97 DDSKAKALEAKIGI--PVLRHSVKKPACTAEEVEYH 130 (190)
T ss_pred chHHHHHHHHhhCC--ceEeecccCCCccHHHHHHH
Confidence 34455555555554 66632222333344555543
No 341
>cd05805 MPG1_transferase GTP-mannose-1-phosphate guanyltransferase (MPG1 transferase), also known as GDP-mannose pyrophosphorylase, is a bifunctional enzyme with both phosphomannose isomerase (PMI) activity and GDP-mannose phosphorylase (GMP) activity. The protein contains an N-terminal NTP transferase domain, an L-beta-H domain, and a C-terminal PGM-like domain that belongs to the alpha-D-phosphohexomutase superfamily. This subfamily is limited to bacteria and archaea. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this group appear to lack conserved residues necessary for metal binding and catalytic activity. Other members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional
Probab=31.32 E-value=3.2e+02 Score=25.13 Aligned_cols=20 Identities=20% Similarity=0.107 Sum_probs=9.8
Q ss_pred CCCCeeeeccCCCCccchhh
Q psy299 215 KNGAPVERHAANASPASLIP 234 (240)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~ 234 (240)
+.|++|....++-..+.+.+
T Consensus 270 ~~~~vv~~v~ss~~l~~~a~ 289 (441)
T cd05805 270 PGGTVVVPVTAPSVIEQLAE 289 (441)
T ss_pred CCCeEEEEccchHHHHHHHH
Confidence 34566655554444444433
No 342
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=31.11 E-value=42 Score=22.00 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=20.3
Q ss_pred eEEEEcCCCCeeee-----ccCCCCccchhhhhhh
Q psy299 209 TKFIVDKNGAPVER-----HAANASPASLIPNIEK 238 (240)
Q Consensus 209 ~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~ 238 (240)
..|.||++|.++.- ++...+-++++.+++.
T Consensus 14 v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~ 48 (74)
T TIGR01352 14 VRFTVDADGRVTSVSVLKSSGDEALDRAALEAVRK 48 (74)
T ss_pred EEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHh
Confidence 57999999998643 3333444677777765
No 343
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=31.00 E-value=2.1e+02 Score=22.31 Aligned_cols=14 Identities=7% Similarity=-0.199 Sum_probs=10.2
Q ss_pred CCCCcHHHHHHHHH
Q psy299 76 RCGYTGKHYKELVE 89 (240)
Q Consensus 76 wCp~C~~~~~~L~~ 89 (240)
+||.|......|+.
T Consensus 15 t~~~C~~ak~iL~~ 28 (147)
T cd03031 15 TFEDCNNVRAILES 28 (147)
T ss_pred cChhHHHHHHHHHH
Confidence 89999866655554
No 344
>PRK09542 manB phosphomannomutase/phosphoglucomutase; Reviewed
Probab=30.73 E-value=3.2e+02 Score=25.20 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=11.2
Q ss_pred CCCCeeeeccCCCCccchhhh
Q psy299 215 KNGAPVERHAANASPASLIPN 235 (240)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ 235 (240)
++|++|....++-+.+.+.+.
T Consensus 268 ~~~~vv~~v~ss~~~~~~a~~ 288 (445)
T PRK09542 268 PGATIIHNLITSRAVPELVAE 288 (445)
T ss_pred CCCeEEEeeccchhHHHHHHH
Confidence 345666665555555544443
No 345
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.48 E-value=1.1e+02 Score=26.27 Aligned_cols=150 Identities=13% Similarity=0.072 Sum_probs=72.5
Q ss_pred CCCcHHH-HHHHHHHHHHHhhcCcEEEEee-------cCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCCCchHH
Q psy299 77 CGYTGKH-YKELVELDEKFRDRGLRILAFP-------CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLW 148 (240)
Q Consensus 77 Cp~C~~~-~~~L~~l~~~~~~~~v~vi~Vs-------~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~~~~l~ 148 (240)
+++|..+ ...+-+..+++++.|+.++-.+ .+.|.|....-.+.+++++++.|+++-. +...... .
T Consensus 32 aGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~t----e~~d~~~---~ 104 (266)
T PRK13398 32 AGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVT----EVMDTRD---V 104 (266)
T ss_pred EeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEE----eeCChhh---H
Confidence 4555554 3445566666666777777666 3344444334456788888888887621 1111111 1
Q ss_pred HHHhhhcC--CcccccccccceEEEEcCCCCeEEeccCCC-CccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccC
Q psy299 149 KFLKHKQG--GTLVDAIKWNFTKFIVDKNGVPVERHAANA-SPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAA 225 (240)
Q Consensus 149 ~~~~~~~~--~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~-~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~ 225 (240)
.++...-. ....+.+...|-.--+-+.|+.+..-.+.. +.+++..+++.+...+ |=.--|+...++-...|.+
T Consensus 105 ~~l~~~vd~~kIga~~~~n~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~G----n~~i~L~~rG~~t~~~Y~~ 180 (266)
T PRK13398 105 EEVADYADMLQIGSRNMQNFELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEG----NENVVLCERGIRTFETYTR 180 (266)
T ss_pred HHHHHhCCEEEECcccccCHHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcC----CCeEEEEECCCCCCCCCCH
Confidence 12111100 000001111111112235577776666644 7888888888877543 1122344443322334554
Q ss_pred CCCccchhhhhh
Q psy299 226 NASPASLIPNIE 237 (240)
Q Consensus 226 ~~~~~~~~~~~~ 237 (240)
..+-...++.++
T Consensus 181 ~~vdl~~i~~lk 192 (266)
T PRK13398 181 NTLDLAAVAVIK 192 (266)
T ss_pred HHHHHHHHHHHH
Confidence 444455555554
No 346
>PF14943 MRP-S26: Mitochondrial ribosome subunit S26
Probab=30.25 E-value=48 Score=26.63 Aligned_cols=33 Identities=24% Similarity=0.286 Sum_probs=25.9
Q ss_pred CCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCee
Q psy299 184 ANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPV 220 (240)
Q Consensus 184 ~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~ 220 (240)
...+.+.|.+.|...|.- ++.+|| -||++|.+|
T Consensus 138 ~FIT~ENLd~~IeeALdn-p~~YNf---aID~~G~~~ 170 (170)
T PF14943_consen 138 NFITRENLDAAIEEALDN-PVDYNF---AIDLEGNIV 170 (170)
T ss_pred CcCCHHhHHHHHHHHHcC-Ccccce---eeCCCCCcC
Confidence 345678899999999984 677775 799999875
No 347
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=29.68 E-value=3.7e+02 Score=24.19 Aligned_cols=128 Identities=13% Similarity=0.189 Sum_probs=72.6
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN 143 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~ 143 (240)
.++|.++.|.+..=..- .-.+.++...|+.+|..|+....|-| -..-.+.++.+.++.|+++ +.. ...++.
T Consensus 136 ~~~p~Vil~vGVNG~GK---TTTIaKLA~~l~~~g~~VllaA~DTF---RAaAiEQL~~w~er~gv~v--I~~-~~G~Dp 206 (340)
T COG0552 136 EKKPFVILFVGVNGVGK---TTTIAKLAKYLKQQGKSVLLAAGDTF---RAAAIEQLEVWGERLGVPV--ISG-KEGADP 206 (340)
T ss_pred CCCcEEEEEEecCCCch---HhHHHHHHHHHHHCCCeEEEEecchH---HHHHHHHHHHHHHHhCCeE--Ecc-CCCCCc
Confidence 46788888865543332 23456666777778888888877622 1123467888888888754 321 123334
Q ss_pred CchHHHHHhhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHh---cccCCCCcceeEEEE-cC
Q psy299 144 AHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL---GRTSAIKWNFTKFIV-DK 215 (240)
Q Consensus 144 ~~~l~~~~~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~l---l~~~~i~~~~~~~~i-~~ 215 (240)
+.-.|..+..... ..-..+|||--||+-. ...|.++|+++ ++...+.-..+.||+ |-
T Consensus 207 AaVafDAi~~Aka--------r~~DvvliDTAGRLhn-------k~nLM~EL~KI~rV~~k~~~~ap~e~llvlDA 267 (340)
T COG0552 207 AAVAFDAIQAAKA--------RGIDVVLIDTAGRLHN-------KKNLMDELKKIVRVIKKDDPDAPHEILLVLDA 267 (340)
T ss_pred HHHHHHHHHHHHH--------cCCCEEEEeCcccccC-------chhHHHHHHHHHHHhccccCCCCceEEEEEEc
Confidence 4444444333111 1124589999887542 34465555554 444444446677777 54
No 348
>PRK13265 glycine/sarcosine/betaine reductase complex protein A; Reviewed
Probab=29.14 E-value=44 Score=25.89 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=28.7
Q ss_pred EEEEEecCCCCCcHHH-------HHHHHHHHHHHhhcCcEEEEee
Q psy299 68 LVIVNVASRCGYTGKH-------YKELVELDEKFRDRGLRILAFP 105 (240)
Q Consensus 68 vlv~F~atwCp~C~~~-------~~~L~~l~~~~~~~~v~vi~Vs 105 (240)
.=|.|-+|-|-.|... ..+++++.++|...|+.|+.=+
T Consensus 32 aevvfs~TECfVctaAGAMDLEnQ~Rvk~~aEk~g~eNvvVllGa 76 (154)
T PRK13265 32 AEVVFSSTECFVUTAAGAMDLENQKRVKDLAEKFGAENVVVILGA 76 (154)
T ss_pred ceEEEEeeeEEEeecccccchHHHHHHHHHHHhcCCccEEEEecc
Confidence 3467889999999863 5778888888888777766544
No 349
>PRK14316 glmM phosphoglucosamine mutase; Provisional
Probab=29.02 E-value=3.6e+02 Score=24.83 Aligned_cols=20 Identities=15% Similarity=0.268 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHhcCcceeee
Q psy299 115 GDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 115 ~~~e~~~~~~~~~~~~fp~~ 134 (240)
.+++.+++.+++.+.++-+.
T Consensus 219 ~~~~~l~~~v~~~~adlGia 238 (448)
T PRK14316 219 THPEALQELVVEKGADLGLA 238 (448)
T ss_pred CCHHHHHHHHhhcCCCEEEE
Confidence 34556666666666655444
No 350
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=28.97 E-value=58 Score=28.49 Aligned_cols=21 Identities=19% Similarity=0.393 Sum_probs=12.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHhh
Q psy299 75 SRCGYTGKHYKELVELDEKFRD 96 (240)
Q Consensus 75 twCp~C~~~~~~L~~l~~~~~~ 96 (240)
+|||.|.- ...|+.+.+.+.+
T Consensus 2 ~~CpGCg~-~~i~~~~~~a~~~ 22 (287)
T TIGR02177 2 DWCPGCGD-FGILSALQRALAE 22 (287)
T ss_pred CcCCCCCC-hHHHHHHHHHHHH
Confidence 69999984 4444444444443
No 351
>PF02831 gpW: gpW; InterPro: IPR004174 GpW is a 68 residue protein known to be present in phage particles. Extracts of phage-infected cells lacking GpW contain DNA-filled heads, and active tails, but no infectious virions. GpW is required for the addition of GpFII to the head, which is, in turn, required for the attachment of tails. Since GpFII and tails are known to be attached at the connector, GpW is also likely to assemble at this site. The addition of GpW to filled heads increases the DNase resistance of the packaged DNA, suggesting that GpW either forms a plug at the connector to prevent ejection of the DNA, or binds directly to the DNA. The large number of positively charged residues in GpW (its calculated pI is 10.8) is consistent with a role in DNA interaction [].; GO: 0019067 viral assembly, maturation, egress, and release; PDB: 2L6Q_A 2L6R_A 1HYW_A.
Probab=28.95 E-value=23 Score=23.94 Aligned_cols=43 Identities=19% Similarity=0.133 Sum_probs=29.7
Q ss_pred chHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCc-cchhhhhhh
Q psy299 190 SLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASP-ASLIPNIEK 238 (240)
Q Consensus 190 ~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~ 238 (240)
+..+++.+|+-+..... |..+|+-|++..+|..- .+.|..|+.
T Consensus 9 ~a~~A~h~L~tG~~vvs------v~~dgrsV~Yt~a~i~~L~~yI~~L~~ 52 (68)
T PF02831_consen 9 EARAAYHDLLTGQRVVS------VQGDGRSVTYTQANIGDLRAYIQQLEA 52 (68)
T ss_dssp HHHHHHHHHHCS-SEEE------EEETTEEEEEEGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCceeE------eecCCeEEEEecCCHHHHHHHHHHHHH
Confidence 46788888998876655 99999999998877543 344444443
No 352
>PF13021 DUF3885: Domain of unknown function (DUF3885)
Probab=28.63 E-value=62 Score=19.21 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=18.2
Q ss_pred HhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcC
Q psy299 94 FRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKN 128 (240)
Q Consensus 94 ~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~ 128 (240)
|.++|..|++. +++.++...++++
T Consensus 4 YDDRGcdvia~-----------~~~~i~~ly~~y~ 27 (38)
T PF13021_consen 4 YDDRGCDVIAN-----------NKERIRPLYEKYN 27 (38)
T ss_pred ccCCCcEEeeC-----------CHHHHHHHHHHHH
Confidence 56788888887 5777888777665
No 353
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=28.54 E-value=3.5e+02 Score=22.64 Aligned_cols=39 Identities=8% Similarity=0.095 Sum_probs=25.9
Q ss_pred HHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeee
Q psy299 88 VELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 88 ~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~ 134 (240)
.+..+++.++|+.|+..+ . .+...+++++++.+++.+++
T Consensus 25 ~~ai~~l~~~G~~~~iaT-G-------R~~~~~~~~~~~l~~~~~~I 63 (272)
T PRK15126 25 LSTLARLRERDITLTFAT-G-------RHVLEMQHILGALSLDAYLI 63 (272)
T ss_pred HHHHHHHHHCCCEEEEEC-C-------CCHHHHHHHHHHcCCCCcEE
Confidence 334444556788886665 1 36778888888888876554
No 354
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=28.17 E-value=2.9e+02 Score=22.10 Aligned_cols=88 Identities=14% Similarity=0.169 Sum_probs=49.5
Q ss_pred CCcccCCeEeecCCCCcccCCC--CC--C-cEEEEEEecCCCC-CcHHHHHHHHHHHHHHhhcCc--EEEEeecCCCCCC
Q psy299 41 NAETVYDFTVKNIKGEDVPLST--YK--G-HVLVIVNVASRCG-YTGKHYKELVELDEKFRDRGL--RILAFPCNQFGGQ 112 (240)
Q Consensus 41 ~g~~~p~f~l~d~~G~~v~ls~--~~--g-k~vlv~F~atwCp-~C~~~~~~L~~l~~~~~~~~v--~vi~Vs~D~~~~~ 112 (240)
+.--.|.+.+.+... +++.. ++ | |.+++++-.|=++ .-...-|.+.++.+++++.+. .|+-||-... ..
T Consensus 14 p~l~~P~l~V~si~~--I~~~~~~Lk~~Gik~li~DkDNTL~~~~~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaG-s~ 90 (168)
T PF09419_consen 14 PSLLLPHLYVPSIRD--IDFEANHLKKKGIKALIFDKDNTLTPPYEDEIPPEYAEWLNELKKQFGKDRVLIVSNSAG-SS 90 (168)
T ss_pred ccccCCCEEcCChhh--CCcchhhhhhcCceEEEEcCCCCCCCCCcCcCCHHHHHHHHHHHHHCCCCeEEEEECCCC-cc
Confidence 334566676666543 33443 43 3 7888888766664 333344666666666665533 3555553321 11
Q ss_pred CCCCHHHHHHHHHhcCcce
Q psy299 113 EPGDADQICEFTKKKNVQF 131 (240)
Q Consensus 113 ~~~~~e~~~~~~~~~~~~f 131 (240)
++-+.++.+.+.+..++++
T Consensus 91 ~d~~~~~a~~~~~~lgIpv 109 (168)
T PF09419_consen 91 DDPDGERAEALEKALGIPV 109 (168)
T ss_pred cCccHHHHHHHHHhhCCcE
Confidence 1224677778888888653
No 355
>PRK10887 glmM phosphoglucosamine mutase; Provisional
Probab=28.12 E-value=3.7e+02 Score=24.70 Aligned_cols=19 Identities=5% Similarity=0.155 Sum_probs=10.6
Q ss_pred CHHHHHHHHHhcCcceeee
Q psy299 116 DADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 116 ~~e~~~~~~~~~~~~fp~~ 134 (240)
+.+.+.+.+++.+.++-+.
T Consensus 218 ~l~~l~~~v~~~~adlGia 236 (443)
T PRK10887 218 DPEALQAAVLAEKADLGIA 236 (443)
T ss_pred CHHHHHHHHHhcCCCeeeE
Confidence 4555666666555555444
No 356
>COG3916 LasI N-acyl-L-homoserine lactone synthetase [Signal transduction mechanisms / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=28.05 E-value=1.6e+02 Score=24.50 Aligned_cols=48 Identities=23% Similarity=0.313 Sum_probs=36.5
Q ss_pred eEEEE-cCCCCeEE--eccCCCCccchHHHHHHhccc-CC----CCcceeEEEEcC
Q psy299 168 TKFIV-DKNGVPVE--RHAANASPASLIPHIEILGRT-SA----IKWNFTKFIVDK 215 (240)
Q Consensus 168 ~~~lI-D~~G~Iv~--~~~~~~~~~~l~~~L~~ll~~-~~----i~~~~~~~~i~~ 215 (240)
..+|. +.+|+|+. +.-+...|.-|.+..-.|+.+ .+ -.|.-+.|.||+
T Consensus 53 ~Yll~~~~~g~I~G~~RlLptt~P~mL~~vF~~Ll~~~~~P~~p~vwEsSRF~vd~ 108 (209)
T COG3916 53 VYLLALTSDGRIVGCVRLLPTTGPYMLTDVFPALLEGGPPPSSPGVWESSRFAVDK 108 (209)
T ss_pred eEEEEEcCCCcEEEEEEeccCCCcchhhhhhHHHhcCCCCCCCCCeEEEeeeeecc
Confidence 33444 89999997 556666677788888999873 33 378999999998
No 357
>cd05802 GlmM GlmM is a bacterial phosphoglucosamine mutase (PNGM) that belongs to the alpha-D-phosphohexomutase superfamily. It is required for the interconversion of glucosamine-6-phosphate and glucosamine-1-phosphate in the biosynthetic pathway of UDP-N-acetylglucosamine, an essential precursor to components of the cell envelope. In order to be active, GlmM must be phosphorylated, which can occur via autophosphorylation or by the Ser/Thr kinase StkP. GlmM functions in a classical ping-pong bi-bi mechanism with glucosamine-1,6-diphosphate as an intermediate. Other members of the alpha-D-phosphohexomutase superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=27.78 E-value=3.9e+02 Score=24.47 Aligned_cols=20 Identities=0% Similarity=0.097 Sum_probs=11.6
Q ss_pred CCHHHHHHHHHhcCcceeee
Q psy299 115 GDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 115 ~~~e~~~~~~~~~~~~fp~~ 134 (240)
.+.+.+++.+++.+.++-+.
T Consensus 215 ~~~~~l~~~v~~~~adlGia 234 (434)
T cd05802 215 THPESLQKAVLENGADLGIA 234 (434)
T ss_pred cCHHHHHHHHHhcCCCEEEE
Confidence 35556666666666655444
No 358
>KOG0780|consensus
Probab=27.46 E-value=5.1e+02 Score=24.11 Aligned_cols=64 Identities=25% Similarity=0.339 Sum_probs=43.5
Q ss_pred cCCCCCCcEEEEEEecCC----CCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCccee
Q psy299 59 PLSTYKGHVLVIVNVASR----CGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFD 132 (240)
Q Consensus 59 ~ls~~~gk~vlv~F~atw----Cp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp 132 (240)
.+.--++|+.+|.|.+-- ...|.. ++-.|+.+|.++..|+.|-| -..-.+.+++.+.+-+++|.
T Consensus 93 ~~~~~K~kpsVimfVGLqG~GKTTtc~K-------lA~y~kkkG~K~~LvcaDTF---RagAfDQLkqnA~k~~iP~y 160 (483)
T KOG0780|consen 93 ALQPKKGKPSVIMFVGLQGSGKTTTCTK-------LAYYYKKKGYKVALVCADTF---RAGAFDQLKQNATKARVPFY 160 (483)
T ss_pred ccccccCCCcEEEEEeccCCCcceeHHH-------HHHHHHhcCCceeEEeeccc---ccchHHHHHHHhHhhCCeeE
Confidence 344457899888887443 234654 34445667899999988843 33566788888888888763
No 359
>TIGR03633 arc_protsome_A proteasome endopeptidase complex, archaeal, alpha subunit. This protein family describes the archaeal proteasome alpha subunit, homologous to both the beta subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=27.12 E-value=2.5e+02 Score=23.11 Aligned_cols=59 Identities=10% Similarity=0.018 Sum_probs=34.8
Q ss_pred ceEEEEcCCCCeEEec-------------------cCCCCccc----hHHHHHHhcccCCCCcceeEEEEcCCCCeeeec
Q psy299 167 FTKFIVDKNGVPVERH-------------------AANASPAS----LIPHIEILGRTSAIKWNFTKFIVDKNGAPVERH 223 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~-------------------~~~~~~~~----l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~ 223 (240)
|..|.+|+.|...... ....+.++ +.+.|.......--.++|+-.+|+++|..-++.
T Consensus 141 ~~Ly~~D~~G~~~~~~~~a~G~g~~~~~~~L~~~~~~~~~~eeai~l~~~al~~~~~d~~~~~~i~i~ii~~~g~~~~~~ 220 (224)
T TIGR03633 141 PRLFETDPSGALLEYKATAIGAGRQAVTEFLEKEYREDLSLDEAIELALKALYSAVEDKLTPENVEVAYITVEDKKFRKL 220 (224)
T ss_pred CEEEEECCCCCeecceEEEECCCCHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhcccCCCCcEEEEEEEcCCCcEEEC
Confidence 6779999999766532 11122233 222333333322346799999999999865554
Q ss_pred cC
Q psy299 224 AA 225 (240)
Q Consensus 224 ~~ 225 (240)
.+
T Consensus 221 ~~ 222 (224)
T TIGR03633 221 SV 222 (224)
T ss_pred CC
Confidence 43
No 360
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=26.84 E-value=65 Score=20.71 Aligned_cols=19 Identities=11% Similarity=-0.067 Sum_probs=13.7
Q ss_pred EEecCCCCCcHHHHHHHHH
Q psy299 71 VNVASRCGYTGKHYKELVE 89 (240)
Q Consensus 71 ~F~atwCp~C~~~~~~L~~ 89 (240)
.|..++||.|.+..-.|..
T Consensus 3 Ly~~~~s~~~~~~~~~L~~ 21 (74)
T cd03051 3 LYDSPTAPNPRRVRIFLAE 21 (74)
T ss_pred EEeCCCCcchHHHHHHHHH
Confidence 4567889999976666554
No 361
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=26.81 E-value=3e+02 Score=22.69 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=25.3
Q ss_pred EecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCC
Q psy299 72 NVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQF 109 (240)
Q Consensus 72 F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~ 109 (240)
|-.-.|..|+..-..|.++.++ .+|..++..+|-+
T Consensus 5 FTSQGCsSCPpAD~~L~~l~~~---~~Vi~LafHVDYW 39 (202)
T PF06764_consen 5 FTSQGCSSCPPADRLLSELAAR---PDVIALAFHVDYW 39 (202)
T ss_dssp EE-TT-TT-HHHHHHHHHHHHH---TSSEEEEEE-STT
T ss_pred ecCCCCCCCcHHHHHHHHhhcC---CCEEEEEecCCcc
Confidence 4455899999999999999988 3688889988843
No 362
>PRK14315 glmM phosphoglucosamine mutase; Provisional
Probab=26.61 E-value=4.4e+02 Score=24.30 Aligned_cols=19 Identities=0% Similarity=0.169 Sum_probs=10.0
Q ss_pred CHHHHHHHHHhcCcceeee
Q psy299 116 DADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 116 ~~e~~~~~~~~~~~~fp~~ 134 (240)
+.+.+.+.+++.+.++-+.
T Consensus 223 ~l~~l~~~v~~~~adlGia 241 (448)
T PRK14315 223 HPEALAKKVREVRADIGIA 241 (448)
T ss_pred CHHHHHHHHHHcCCCEEEE
Confidence 3455555555555555444
No 363
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=26.38 E-value=61 Score=21.40 Aligned_cols=20 Identities=15% Similarity=0.036 Sum_probs=13.4
Q ss_pred EEEecCCCCCcHHHHHHHHH
Q psy299 70 IVNVASRCGYTGKHYKELVE 89 (240)
Q Consensus 70 v~F~atwCp~C~~~~~~L~~ 89 (240)
..|....||.|++..-.|.+
T Consensus 3 ~Ly~~~~~p~c~kv~~~L~~ 22 (77)
T cd03040 3 TLYQYKTCPFCCKVRAFLDY 22 (77)
T ss_pred EEEEcCCCHHHHHHHHHHHH
Confidence 34556789999977655444
No 364
>PRK14323 glmM phosphoglucosamine mutase; Provisional
Probab=26.32 E-value=3.7e+02 Score=24.72 Aligned_cols=20 Identities=5% Similarity=0.219 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHhcCcceeee
Q psy299 115 GDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 115 ~~~e~~~~~~~~~~~~fp~~ 134 (240)
.+.+.+++.+++.+.++-+.
T Consensus 219 ~~l~~l~~~v~~~~adlGia 238 (440)
T PRK14323 219 THPEALQRFVVEGGLDLGVA 238 (440)
T ss_pred CCHHHHHHHHhccCCCEEEE
Confidence 35556666666666655444
No 365
>PF14062 DUF4253: Domain of unknown function (DUF4253)
Probab=26.11 E-value=1e+02 Score=22.77 Aligned_cols=48 Identities=13% Similarity=0.212 Sum_probs=30.1
Q ss_pred CCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCC---CCCCCHHHHHHHHHh
Q psy299 76 RCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGG---QEPGDADQICEFTKK 126 (240)
Q Consensus 76 wCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~---~~~~~~e~~~~~~~~ 126 (240)
.|+.-...+..|+.++++|+ +.+++++.|...- .++.+.++..+++.+
T Consensus 25 ~~~~~~~~~a~lr~W~er~g---a~i~~i~~d~le~~v~~pP~~~~ea~~lA~E 75 (111)
T PF14062_consen 25 YCPDTADIIAVLRYWEERYG---AEIVGIGFDTLELSVARPPQTPEEAEALAAE 75 (111)
T ss_pred CCCCHHHHHHHHHHHHHHhC---EEEEEEECCEEEEEECCCCCCHHHHHHHHHH
Confidence 37777778888888888876 5566655442211 223355777777665
No 366
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=25.92 E-value=3.9e+02 Score=22.23 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeee
Q psy299 83 HYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 83 ~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~ 134 (240)
.-+...+..++++++|+.|+-++= .....+.+++++.+++.|++
T Consensus 21 i~~~~~~al~~~~~~g~~v~iaTG--------R~~~~~~~~~~~l~~~~~~I 64 (264)
T COG0561 21 ISPETKEALARLREKGVKVVLATG--------RPLPDVLSILEELGLDGPLI 64 (264)
T ss_pred cCHHHHHHHHHHHHCCCEEEEECC--------CChHHHHHHHHHcCCCccEE
Confidence 456666666677888999977752 36688999999999887666
No 367
>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]
Probab=25.75 E-value=38 Score=28.63 Aligned_cols=32 Identities=22% Similarity=0.312 Sum_probs=26.4
Q ss_pred ceeEEEEcCCCCe-----eeeccCCCCccchhhhhhh
Q psy299 207 NFTKFIVDKNGAP-----VERHAANASPASLIPNIEK 238 (240)
Q Consensus 207 ~~~~~~i~~~~~~-----~~~~~~~~~~~~~~~~~~~ 238 (240)
--.+|.||++|.| +++++.+++-.+.+++|++
T Consensus 182 V~V~f~i~~~G~v~~v~v~~SSg~~~lD~aal~air~ 218 (244)
T COG0810 182 VKVKFTIDPDGNVTNVRVLKSSGSPALDRAALEAIRK 218 (244)
T ss_pred EEEEEEECCCCCEeeeEEeecCCcHHHHHHHHHHHHH
Confidence 4478999999965 4568888888999999987
No 368
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=25.36 E-value=4.8e+02 Score=23.08 Aligned_cols=39 Identities=5% Similarity=0.175 Sum_probs=28.5
Q ss_pred HHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeE
Q psy299 89 ELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFE 135 (240)
Q Consensus 89 ~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~ 135 (240)
+..++++++|+.||..|- .+..++..+.++.++..|+++
T Consensus 25 ~aL~~Lk~~GI~vVlaTG--------Rt~~ev~~l~~~Lgl~~p~I~ 63 (302)
T PRK12702 25 QALAALERRSIPLVLYSL--------RTRAQLEHLCRQLRLEHPFIC 63 (302)
T ss_pred HHHHHHHHCCCEEEEEcC--------CCHHHHHHHHHHhCCCCeEEE
Confidence 334445556888887763 478899999999998877763
No 369
>TIGR01455 glmM phosphoglucosamine mutase. This model describes GlmM, phosphoglucosamine mutase, also designated in MrsA and YhbF E. coli, UreC in Helicobacter pylori, and femR315 or FemD in Staphlococcus aureus. It converts glucosamine-6-phosphate to glucosamine-1-phosphate as part of the pathway toward UDP-N-acetylglucosamine for peptidoglycan and lipopolysaccharides.
Probab=25.16 E-value=4.6e+02 Score=24.07 Aligned_cols=9 Identities=44% Similarity=0.545 Sum_probs=4.4
Q ss_pred EEEcCCCCe
Q psy299 170 FIVDKNGVP 178 (240)
Q Consensus 170 ~lID~~G~I 178 (240)
.++|.+|++
T Consensus 246 ~~vd~~G~~ 254 (443)
T TIGR01455 246 LAVDANGRI 254 (443)
T ss_pred EEECCCCcE
Confidence 345555543
No 370
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=24.95 E-value=48 Score=23.99 Aligned_cols=31 Identities=19% Similarity=0.265 Sum_probs=22.8
Q ss_pred EecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEee
Q psy299 72 NVASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105 (240)
Q Consensus 72 F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs 105 (240)
|+-.+||.|......+.+.- ....+.++.+.
T Consensus 2 ~YDg~C~lC~~~~~~l~~~d---~~~~l~~~~~~ 32 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRRD---RGGRLRFVDIQ 32 (114)
T ss_pred EECCCCHhHHHHHHHHHhcC---CCCCEEEEECC
Confidence 56789999999988888761 11358888873
No 371
>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional
Probab=24.93 E-value=4.2e+02 Score=22.36 Aligned_cols=66 Identities=12% Similarity=0.151 Sum_probs=41.1
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeee
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~ 134 (240)
.|..++|-+-+--. +...+-.+.++.++.. .++.+++|.+|.. ....+.+.++++++++|+++.+.
T Consensus 28 ~~~kilVa~SGG~D--S~~LL~ll~~l~~~~~-~~~~l~av~vd~g--~~~~~~~~~~~~~~~lgI~~~v~ 93 (258)
T PRK10696 28 EGDRVMVCLSGGKD--SYTLLDILLNLQKRAP-INFELVAVNLDQK--QPGFPEHVLPEYLESLGVPYHIE 93 (258)
T ss_pred CCCEEEEEecCCHH--HHHHHHHHHHHHHhCC-CCeEEEEEEecCC--CCCCCHHHHHHHHHHhCCCEEEE
Confidence 36667777743333 2333445555544332 3578999998843 22345667789999999998665
No 372
>PF10138 vWA-TerF-like: vWA found in TerF C terminus ; InterPro: IPR019303 This entry represents the N-terminal domain of a family of proteins that confer resistance to the metalloid element tellurium and its salts.
Probab=24.65 E-value=4e+02 Score=21.99 Aligned_cols=115 Identities=13% Similarity=0.200 Sum_probs=68.0
Q ss_pred CCcHHHHHHHHHHHHHHhhcC-cEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeeeEeeecCCCC-C----chHHHHH
Q psy299 78 GYTGKHYKELVELDEKFRDRG-LRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDN-A----HPLWKFL 151 (240)
Q Consensus 78 p~C~~~~~~L~~l~~~~~~~~-v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~~~~d~~~~~-~----~~l~~~~ 151 (240)
+.++.....+-.+..++.+.| +.++..+.. +...++-+......++++....++-+. ..|.. . ......+
T Consensus 21 G~vQ~~~Er~lalA~~~DdDG~i~v~~Fs~~-~~~~~~vt~~~~~~~v~~~~~~~~~~~---~~G~t~y~~vm~~v~~~y 96 (200)
T PF10138_consen 21 GTVQRVVERILALAAQFDDDGEIDVWFFSTE-FDRLPDVTLDNYEGYVDELHAGLPDWG---RMGGTNYAPVMEDVLDHY 96 (200)
T ss_pred ccHHHHHHHHHHHHhhcCCCCceEEEEeCCC-CCcCCCcCHHHHHHHHHHHhccccccC---CCCCcchHHHHHHHHHHH
Confidence 456777888888888898887 999888865 456666788899999987655442221 11221 1 1122222
Q ss_pred hhhcCCcccccccccceEEEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEE
Q psy299 152 KHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKF 211 (240)
Q Consensus 152 ~~~~~~~~~~~v~~~P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~ 211 (240)
.... -...|+++|+-.+|-.- +..++.+.|.+. +..+|-|.|..+
T Consensus 97 ~~~~-------~~~~P~~VlFiTDG~~~-------~~~~~~~~i~~a-s~~pifwqFVgi 141 (200)
T PF10138_consen 97 FKRE-------PSDAPALVLFITDGGPD-------DRRAIEKLIREA-SDEPIFWQFVGI 141 (200)
T ss_pred hhcC-------CCCCCeEEEEEecCCcc-------chHHHHHHHHhc-cCCCeeEEEEEe
Confidence 1111 11237777776666432 223355555555 666889988764
No 373
>PRK09381 trxA thioredoxin; Provisional
Probab=24.41 E-value=70 Score=22.68 Aligned_cols=32 Identities=19% Similarity=0.231 Sum_probs=24.0
Q ss_pred eEEEEcCCCCeeeeccCCCCccchhhhhhhcC
Q psy299 209 TKFIVDKNGAPVERHAANASPASLIPNIEKYL 240 (240)
Q Consensus 209 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (240)
=++++-++|+++.++.....++++...|++.|
T Consensus 77 Pt~~~~~~G~~~~~~~G~~~~~~l~~~i~~~~ 108 (109)
T PRK09381 77 PTLLLFKNGEVAATKVGALSKGQLKEFLDANL 108 (109)
T ss_pred CEEEEEeCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 45666689999999877677777777777643
No 374
>PRK10976 putative hydrolase; Provisional
Probab=24.26 E-value=4.2e+02 Score=22.03 Aligned_cols=39 Identities=8% Similarity=0.099 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeee
Q psy299 88 VELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 88 ~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~ 134 (240)
.+..+++.++|+.|+-.|= .....+.+++++.+++.+++
T Consensus 25 ~~ai~~l~~~G~~~~iaTG--------R~~~~~~~~~~~l~~~~~~I 63 (266)
T PRK10976 25 KETLKLLTARGIHFVFATG--------RHHVDVGQIRDNLEIKSYMI 63 (266)
T ss_pred HHHHHHHHHCCCEEEEEcC--------CChHHHHHHHHhcCCCCeEE
Confidence 3444445567888876651 35667788888888775554
No 375
>cd08155 catalase_clade_2 Clade 2 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 2 catalases are mostly found in bacteria and fungi; they have a large subunit size of 75 to 84 kDa, and bind a heme d group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=24.11 E-value=1.1e+02 Score=28.56 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=42.5
Q ss_pred ceEEEEcCCCCeEEec-------------------cCCCCccchHHHHHHhcccCC-CCcceeEEEEcCCCCeeeeccC
Q psy299 167 FTKFIVDKNGVPVERH-------------------AANASPASLIPHIEILGRTSA-IKWNFTKFIVDKNGAPVERHAA 225 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~-------------------~~~~~~~~l~~~L~~ll~~~~-i~~~~~~~~i~~~~~~~~~~~~ 225 (240)
.++.+++++|+..+.- ....+++.+.++|-.-|+.+. ++|.+.-.|.+++=.-..+|.+
T Consensus 158 htf~~vna~G~~~~Vk~~~~p~qG~~~l~~eeA~~~~~~~~d~l~~dL~~~I~~G~~p~w~l~vQv~~~~d~~~~~f~~ 236 (443)
T cd08155 158 HTFRLVNAQGKSTFVKFHWKPVLGVHSLVWDEAQKIAGKDPDFHRRDLWEAIESGDYPEWELGVQLIDEEDEFKFDFDI 236 (443)
T ss_pred cceEEEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhhCCCCchHHHHHHHHHhcCCCceEEEEEEEcCHHHHhcCCCCC
Confidence 4677999999877632 012244558888888777777 9999999999888775555543
No 376
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=23.98 E-value=2.9e+02 Score=20.17 Aligned_cols=47 Identities=13% Similarity=0.261 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCC--HHHHHHHHHhcCccee
Q psy299 84 YKELVELDEKFRDRGLRILAFPCNQFGGQEPGD--ADQICEFTKKKNVQFD 132 (240)
Q Consensus 84 ~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~--~e~~~~~~~~~~~~fp 132 (240)
.|.+.++.+.++++|+.++.+|-.... .... .+.+...++..++.+.
T Consensus 27 ~~~v~~~l~~L~~~g~~l~i~Sn~~~~--~~~~~~~~~~~~~l~~~~l~~~ 75 (132)
T TIGR01662 27 YPEVPDALAELKEAGYKVVIVTNQSGI--GRGKFSSGRVARRLEELGVPID 75 (132)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCccc--cccHHHHHHHHHHHHHCCCCEE
Confidence 577777888888889999888743100 0011 5677888888888753
No 377
>TIGR03634 arc_protsome_B proteasome endopeptidase complex, archaeal, beta subunit. This protein family describes the archaeal proteasome beta subunit, homologous to both the alpha subunit and to the alpha and beta subunits of eukaryotic proteasome subunits. This family is universal in the first 29 complete archaeal genomes but occasionally is duplicated.
Probab=23.93 E-value=2.5e+02 Score=22.18 Aligned_cols=16 Identities=19% Similarity=0.244 Sum_probs=13.2
Q ss_pred CCCcceeEEEEcCCCC
Q psy299 203 AIKWNFTKFIVDKNGA 218 (240)
Q Consensus 203 ~i~~~~~~~~i~~~~~ 218 (240)
.-.++|+-++|+++|.
T Consensus 170 ~~~~~~~v~ii~~~g~ 185 (185)
T TIGR03634 170 ASGNGIDVAVITKDGV 185 (185)
T ss_pred cCCCCEEEEEEcCCCC
Confidence 4467999999999984
No 378
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=23.41 E-value=1.6e+02 Score=22.75 Aligned_cols=42 Identities=19% Similarity=0.339 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceee
Q psy299 84 YKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDL 133 (240)
Q Consensus 84 ~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~ 133 (240)
+..|.++.+++++.|+.++.+.-+ ..+.+.++++++++.--+
T Consensus 52 ~~sL~~L~~~L~~~g~~L~v~~g~--------~~~~l~~l~~~~~~~~V~ 93 (165)
T PF00875_consen 52 LESLADLQESLRKLGIPLLVLRGD--------PEEVLPELAKEYGATAVY 93 (165)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEESS--------HHHHHHHHHHHHTESEEE
T ss_pred HHHHHHHHHHHHhcCcceEEEecc--------hHHHHHHHHHhcCcCeeE
Confidence 688999999999999999888643 678888999999976533
No 379
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=23.36 E-value=2.1e+02 Score=20.54 Aligned_cols=43 Identities=7% Similarity=0.047 Sum_probs=29.0
Q ss_pred HHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeee
Q psy299 88 VELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 88 ~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~ 134 (240)
++..+.++...+.+|.|+.| -++...+.+..+++.+++++-.+
T Consensus 22 ~~v~kai~~gkaklViiA~D----~~~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 22 KRTIKAIKLGKAKLVIVASN----CPKDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred HHHHHHHHcCCceEEEEeCC----CCHHHHHHHHHHHHHcCCCEEEE
Confidence 34445555556778888877 33467778888889999876443
No 380
>PRK14314 glmM phosphoglucosamine mutase; Provisional
Probab=23.28 E-value=4.4e+02 Score=24.31 Aligned_cols=18 Identities=6% Similarity=0.211 Sum_probs=7.8
Q ss_pred CHHHHHHHHHhcCcceee
Q psy299 116 DADQICEFTKKKNVQFDL 133 (240)
Q Consensus 116 ~~e~~~~~~~~~~~~fp~ 133 (240)
+++.+.+.+++.+.++-+
T Consensus 224 ~~~~l~~~v~~~~adlGi 241 (450)
T PRK14314 224 HPEVIAKAVIEHGADLGI 241 (450)
T ss_pred CHHHHHHHHHhcCCCeEE
Confidence 344444444444444433
No 381
>cd08154 catalase_clade_1 Clade 1 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 1 catalases are found in bacteria, algae, and plants; they have a relatively small subunit size of 55 to 69 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. They appear to form tetramers. In eukaryotic cells, catalases are located in peroxisomes.
Probab=23.05 E-value=1.3e+02 Score=28.37 Aligned_cols=59 Identities=12% Similarity=0.002 Sum_probs=42.5
Q ss_pred ceEEEEcCCCCeEEec------cC-------------CCCccchHHHHHHhcc-cCCCCcceeEEEEcCCCCeeeeccC
Q psy299 167 FTKFIVDKNGVPVERH------AA-------------NASPASLIPHIEILGR-TSAIKWNFTKFIVDKNGAPVERHAA 225 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~------~~-------------~~~~~~l~~~L~~ll~-~~~i~~~~~~~~i~~~~~~~~~~~~ 225 (240)
.++.+++++|+..+.- .| ..+++.+.++|-.-|+ +..++|.+.-.|.+++-....+|++
T Consensus 193 htf~~vn~~G~~~~VK~h~~p~~G~~~l~~eeA~~~~g~~~d~l~~dL~~~I~~G~~p~w~l~vQv~~~~D~~~~~f~~ 271 (469)
T cd08154 193 HTYKWVNAEGKVVYVKYHWKPKQGVKNLTAEEAAEVQGKNFNHATQDLYDAIAAGNYPEWELYVQIMDPKDLDKLDFDP 271 (469)
T ss_pred ceeEEEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhhcCCCcHHHHHHHHHHhcCCCceEEEEEEEcCHHHhhcCCCCC
Confidence 4677999999877622 11 1244558888877775 5599999999999988777666654
No 382
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=22.86 E-value=63 Score=21.55 Aligned_cols=20 Identities=10% Similarity=-0.067 Sum_probs=13.1
Q ss_pred EEEecCCCCCcHHHHHHHHH
Q psy299 70 IVNVASRCGYTGKHYKELVE 89 (240)
Q Consensus 70 v~F~atwCp~C~~~~~~L~~ 89 (240)
..+..++||.|.+..-.|.+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~ 22 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTE 22 (77)
T ss_pred eEecCCCCchHHHHHHHHHH
Confidence 34556789999866555544
No 383
>PRK06756 flavodoxin; Provisional
Probab=22.81 E-value=2.6e+02 Score=21.13 Aligned_cols=13 Identities=15% Similarity=0.238 Sum_probs=5.9
Q ss_pred HHHHHHHHhcCcc
Q psy299 118 DQICEFTKKKNVQ 130 (240)
Q Consensus 118 e~~~~~~~~~~~~ 130 (240)
..+.+.+++.|..
T Consensus 104 ~~l~~~l~~~g~~ 116 (148)
T PRK06756 104 DILIEKLQERGAA 116 (148)
T ss_pred HHHHHHHHHCCCE
Confidence 3444444444443
No 384
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=22.53 E-value=25 Score=27.21 Aligned_cols=15 Identities=13% Similarity=0.157 Sum_probs=12.4
Q ss_pred CCCCCcHHHHHHHHH
Q psy299 75 SRCGYTGKHYKELVE 89 (240)
Q Consensus 75 twCp~C~~~~~~L~~ 89 (240)
.-||.|+..+|.|--
T Consensus 7 i~CPhCRq~ipALtL 21 (161)
T PF09654_consen 7 IQCPHCRQTIPALTL 21 (161)
T ss_pred CcCchhhcccchhee
Confidence 369999999998853
No 385
>cd03087 PGM_like1 This archaeal PGM-like (phosphoglucomutase-like) protein of unknown function belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. The alpha-D-phosphohexomutases include several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Members of this superfamily include the phosphoglucomutases (PGM1 and PGM2), phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.
Probab=22.49 E-value=6e+02 Score=23.23 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=13.0
Q ss_pred CCCCeeeeccCCCCccchhhh
Q psy299 215 KNGAPVERHAANASPASLIPN 235 (240)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~~ 235 (240)
+.|++|..+.++-+.+.+.+.
T Consensus 266 ~~~~vv~~v~ss~~l~~~a~~ 286 (439)
T cd03087 266 GGGKVVTPVDASMLVEDVVEE 286 (439)
T ss_pred CCCcEEEeccchHHHHHHHHH
Confidence 456777777666665555544
No 386
>TIGR02652 conserved hypothetical protein TIGR02652, cyanobacterial. Members of this family of conserved hypothetical proteins are found, so far, only in the Cyanobacteria. Members are about 170 amino acids long and share a motif CxxCx(14)CxxH near the amino end.
Probab=22.48 E-value=26 Score=27.22 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=12.4
Q ss_pred CCCCCcHHHHHHHHH
Q psy299 75 SRCGYTGKHYKELVE 89 (240)
Q Consensus 75 twCp~C~~~~~~L~~ 89 (240)
.-||.|+..+|.|--
T Consensus 10 i~CPhCRQ~ipALtL 24 (163)
T TIGR02652 10 IRCPHCRQNIPALTL 24 (163)
T ss_pred CcCchhhcccchhee
Confidence 369999999998853
No 387
>KOG2603|consensus
Probab=22.19 E-value=4.5e+02 Score=23.45 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=35.7
Q ss_pred CeEeecCCCCcccCCCCCCcEEEEEEecCC----CCCcHHHHHHHHHHHHHHhhc
Q psy299 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASR----CGYTGKHYKELVELDEKFRDR 97 (240)
Q Consensus 47 ~f~l~d~~G~~v~ls~~~gk~vlv~F~atw----Cp~C~~~~~~L~~l~~~~~~~ 97 (240)
-+++.|-+=..+-....+.-.+++.|.|+. |+.|..+..+.+-+.+.+...
T Consensus 42 VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~ 96 (331)
T KOG2603|consen 42 VIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYN 96 (331)
T ss_pred eEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhcc
Confidence 355555444443334556666777777664 999999999999999998865
No 388
>PTZ00246 proteasome subunit alpha; Provisional
Probab=22.11 E-value=2.1e+02 Score=24.16 Aligned_cols=51 Identities=6% Similarity=-0.021 Sum_probs=29.9
Q ss_pred ceEEEEcCCCCeEEec-------------------cCCCCccc----hHHHHHHhcccC-CCCcceeEEEEcCCC
Q psy299 167 FTKFIVDKNGVPVERH-------------------AANASPAS----LIPHIEILGRTS-AIKWNFTKFIVDKNG 217 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~-------------------~~~~~~~~----l~~~L~~ll~~~-~i~~~~~~~~i~~~~ 217 (240)
|..|.+|+.|...... ....+.++ +.+.|..++... .-.++++-.+|+++|
T Consensus 145 p~Ly~~D~~Gs~~~~~~~a~G~gs~~~~~~Le~~~~~~ms~eeai~l~~~al~~~~~~d~~s~~~vev~ii~~~~ 219 (253)
T PTZ00246 145 YQLYHTDPSGNYSGWKATAIGQNNQTAQSILKQEWKEDLTLEQGLLLAAKVLTKSMDSTSPKADKIEVGILSHGE 219 (253)
T ss_pred cEEEEECCCCCEecceEEEECCCcHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEecCC
Confidence 6779999999765432 11122233 222333333322 236899999999998
No 389
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=22.06 E-value=91 Score=19.14 Aligned_cols=30 Identities=7% Similarity=-0.091 Sum_probs=18.1
Q ss_pred EEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEee
Q psy299 71 VNVASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105 (240)
Q Consensus 71 ~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs 105 (240)
.|...+||.|....-.|+.. +..+.++.+.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~ 32 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVD 32 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeC
Confidence 34567899999766665554 2234555554
No 390
>PF07411 DUF1508: Domain of unknown function (DUF1508); InterPro: IPR010879 This domain is found in a family of proteins, which have no known function. Members of this family are often found as tandem repeats and in some cases represent the whole protein.; PDB: 3BID_H 2K49_A 2K8E_A 2K7I_A.
Probab=22.04 E-value=1.4e+02 Score=18.52 Aligned_cols=33 Identities=21% Similarity=0.151 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCeEEeccCCCCccchHHHHHHhc
Q psy299 167 FTKFIVDKNGVPVERHAANASPASLIPHIEILG 199 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll 199 (240)
+.+.|.+.+|+|+..-.+..+...-...|..+-
T Consensus 6 ~~f~L~a~ng~viasse~Y~sk~~a~~~I~~Vk 38 (49)
T PF07411_consen 6 FRFRLKAGNGEVIASSEGYSSKADAEKGIESVK 38 (49)
T ss_dssp EEEEEE-TTS-EEEEBEEBSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCEEEecCCcCCHHHHHHHHHHHH
Confidence 356799999999997766666666555555443
No 391
>PRK11675 LexA regulated protein; Provisional
Probab=21.96 E-value=2e+02 Score=20.59 Aligned_cols=48 Identities=19% Similarity=0.293 Sum_probs=35.7
Q ss_pred CCCcHHHHHHHHHHHHHHhh--cCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcc
Q psy299 77 CGYTGKHYKELVELDEKFRD--RGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQ 130 (240)
Q Consensus 77 Cp~C~~~~~~L~~l~~~~~~--~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~ 130 (240)
.|.++.+.-.+++-.+.-.+ +|+.-|.|-+| .+..+.+.+|+++.+++
T Consensus 26 npl~r~~ql~inkrnq~~rdk~~glKRveVKld------edl~ekL~eyAe~~nit 75 (90)
T PRK11675 26 NPLSRDEQLRINKRNQLKRDKVRGLKRVELKLN------ADLVDALNELAEARNIS 75 (90)
T ss_pred CCCChHHHHHhhHHHHHHHHHHcCceeEEEEEC------HHHHHHHHHHHHHcCCC
Confidence 56777776666655554444 49999999887 36788999999999875
No 392
>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]
Probab=21.92 E-value=2.2e+02 Score=24.19 Aligned_cols=64 Identities=13% Similarity=0.155 Sum_probs=44.2
Q ss_pred cccCCeEeecCCCCcccCCCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHH
Q psy299 43 ETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICE 122 (240)
Q Consensus 43 ~~~p~f~l~d~~G~~v~ls~~~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~ 122 (240)
.+.|-+.++|+||..+. ..+-|-|. -| ++.++++.|+.||..|. .+..++..
T Consensus 4 ~~~~~lIFtDlD~TLl~------------~~ye~~pA----~p----v~~el~d~G~~Vi~~SS--------KT~aE~~~ 55 (274)
T COG3769 4 IQMPLLIFTDLDGTLLP------------HSYEWQPA----AP----VLLELKDAGVPVILCSS--------KTRAEMLY 55 (274)
T ss_pred cccceEEEEcccCcccC------------CCCCCCcc----ch----HHHHHHHcCCeEEEecc--------chHHHHHH
Confidence 35667778899886543 22233332 22 34556677999999985 48899999
Q ss_pred HHHhcCcc-eeee
Q psy299 123 FTKKKNVQ-FDLF 134 (240)
Q Consensus 123 ~~~~~~~~-fp~~ 134 (240)
+.+..+++ -|++
T Consensus 56 l~~~l~v~~~p~i 68 (274)
T COG3769 56 LQKSLGVQGLPLI 68 (274)
T ss_pred HHHhcCCCCCcee
Confidence 99999998 5666
No 393
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=21.36 E-value=1.8e+02 Score=25.83 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=33.7
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeec
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~ 106 (240)
.|||+++.|-...=|.+...+..+++...+..-.++-+|++..
T Consensus 157 dGKPv~~Iy~p~~~pd~~~~~~~wr~~a~~~G~~giyii~~~~ 199 (345)
T PF14307_consen 157 DGKPVFLIYRPGDIPDIKEMIERWREEAKEAGLPGIYIIAVQG 199 (345)
T ss_pred CCEEEEEEECcccccCHHHHHHHHHHHHHHcCCCceEEEEEec
Confidence 5899988887765677888888888888876666788888764
No 394
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=21.29 E-value=1e+02 Score=26.90 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=14.2
Q ss_pred cCCCCCcHHHHHHHHHHHHHHhh
Q psy299 74 ASRCGYTGKHYKELVELDEKFRD 96 (240)
Q Consensus 74 atwCp~C~~~~~~L~~l~~~~~~ 96 (240)
.+|||.|. ....++.+.+.+.+
T Consensus 8 ~~~CpGCg-~~~i~~~~~~a~~~ 29 (280)
T PRK11869 8 IAWCPGCG-NFGIRNALMKALSE 29 (280)
T ss_pred CCCCcCCC-CHHHHHHHHHHHHH
Confidence 57999998 44555555555544
No 395
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=21.14 E-value=4.8e+02 Score=21.55 Aligned_cols=39 Identities=13% Similarity=0.244 Sum_probs=26.3
Q ss_pred HHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeee
Q psy299 88 VELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 88 ~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~ 134 (240)
.+..+++.++|+.++..+= .+...+.++.++.+++.+++
T Consensus 22 ~~~i~~l~~~G~~~~iaTG--------R~~~~~~~~~~~~~~~~~~I 60 (256)
T TIGR00099 22 KEALAKLREKGIKVVLATG--------RPYKEVKNILKELGLDTPFI 60 (256)
T ss_pred HHHHHHHHHCCCeEEEEeC--------CCHHHHHHHHHHcCCCCCEE
Confidence 3444555666888877752 36778888888888775554
No 396
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=20.99 E-value=4.2e+02 Score=20.86 Aligned_cols=51 Identities=14% Similarity=0.111 Sum_probs=32.2
Q ss_pred CcccCCeEeec-CCCCcccCCCC---CCcEEEEEEecCCCCCcHHHHHHHHHHHHHH
Q psy299 42 AETVYDFTVKN-IKGEDVPLSTY---KGHVLVIVNVASRCGYTGKHYKELVELDEKF 94 (240)
Q Consensus 42 g~~~p~f~l~d-~~G~~v~ls~~---~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~ 94 (240)
|.-+|++.++. .+|+++.|.+. .|++-++.|-..- .+......|.++.+.+
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~adGrfrI~vFagd~--~~~~~~~~l~~~~~~L 55 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPADGRFRIYVFAGDI--APAQQKSRLTQLCDAL 55 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccCCCCEEEEEEcCCC--CchhHHHHHHHHHHHH
Confidence 45667777665 48888888663 5899888885432 2234444555555555
No 397
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=20.96 E-value=70 Score=27.89 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=15.0
Q ss_pred ecCCCCCcHHHHHHHHHHHHHHh
Q psy299 73 VASRCGYTGKHYKELVELDEKFR 95 (240)
Q Consensus 73 ~atwCp~C~~~~~~L~~l~~~~~ 95 (240)
..+|||.|--.. .++.+.+.+.
T Consensus 16 ~~~~CpGCg~~~-il~~l~~al~ 37 (286)
T PRK11867 16 EPRWCPGCGDGS-ILAALQRALA 37 (286)
T ss_pred CCCcCCCCCCHH-HHHHHHHHHH
Confidence 346999998554 6666666663
No 398
>PF09494 Slx4: Slx4 endonuclease; InterPro: IPR018574 The Slx4 protein is a heteromeric structure-specific endonuclease found in fungi. Slx4 with Slx1 acts as a nuclease on branched DNA substrates, particularly simple-Y, 5'-flap, or replication fork structures by cleaving the strand bearing the 5' non-homologous arm at the branch junction and thus generating ligatable nicked products from 5'-flap or replication fork substrates [].
Probab=20.92 E-value=2e+02 Score=18.82 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=22.3
Q ss_pred HHHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcce
Q psy299 87 LVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQF 131 (240)
Q Consensus 87 L~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~f 131 (240)
|.+++..++..|+....- -+...+++|+...|+.|
T Consensus 27 L~el~~~L~~~g~~~~~~----------~~~~~l~~~lD~~gIt~ 61 (64)
T PF09494_consen 27 LEELHAWLKASGIGFDRK----------VDPSKLKEWLDSQGITF 61 (64)
T ss_pred HHHHHHHHHHcCCCccce----------eCHHHHHHHHHHCCcee
Confidence 455555555555533332 26788888888888876
No 399
>PLN02609 catalase
Probab=20.90 E-value=1.4e+02 Score=28.34 Aligned_cols=59 Identities=8% Similarity=0.044 Sum_probs=41.6
Q ss_pred ceEEEEcCCCCeEEec---cC----------------CCCccchHHHHHHhcccCCC-CcceeEEEEcCCCCeeeeccC
Q psy299 167 FTKFIVDKNGVPVERH---AA----------------NASPASLIPHIEILGRTSAI-KWNFTKFIVDKNGAPVERHAA 225 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~---~~----------------~~~~~~l~~~L~~ll~~~~i-~~~~~~~~i~~~~~~~~~~~~ 225 (240)
.++.+++++|+..+.- .+ ..+++.+.++|-+-|+.+.. +|...-.|.+++-..-.+|.+
T Consensus 208 htF~~vn~~G~~~~Vk~h~~p~~G~~~l~~eeA~~~~g~~~d~l~~DL~~~I~~G~~P~w~l~vQv~~~~d~~~~~f~~ 286 (492)
T PLN02609 208 HTYKLINKAGKAHYVKFHWKPTCGVKNLLDEEAVRVGGSNHSHATQDLYDSIAAGNYPEWKLFIQTMDPEDEDKFDFDP 286 (492)
T ss_pred cceEEECCCCCEEEEEEEEEeCCCCCCCCHHHHHHhhCCCCcHHHHHHHHHHhcCCCceeEEEEEEcCHHHHhcCCCCC
Confidence 4677999999877622 11 11344577888777766655 999999999988877766654
No 400
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=20.77 E-value=2.8e+02 Score=20.53 Aligned_cols=58 Identities=12% Similarity=0.070 Sum_probs=35.3
Q ss_pred ceEEEEcCCCCeEEeccCC-----CCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeeeccCCCCccchhhhh
Q psy299 167 FTKFIVDKNGVPVERHAAN-----ASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPASLIPNI 236 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~~~~-----~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 236 (240)
+..+.|+++|++....... .+.++|...|++..+. +++..++-+-+.++.-..+++.+
T Consensus 51 ~~~i~i~~~g~~~~~~~~~~~~~~~~~~~L~~~L~~~~~~------------~~~~~v~i~aD~~~~~~~vv~vm 113 (129)
T TIGR02801 51 PITVSVDADGKIYLNDNKIDKDEQLDADELLAEIAAALAA------------NPDTPVLIRADKTVPYGEVIKVM 113 (129)
T ss_pred CEEEEEeCCCcEEEcccccchhhhcCHHHHHHHHHHHHhh------------CCCceEEEEcCCCCCHHHHHHHH
Confidence 3568999999976533221 1234466777776654 24456777777777765555444
No 401
>PRK12359 flavodoxin FldB; Provisional
Probab=20.59 E-value=3.4e+02 Score=21.63 Aligned_cols=13 Identities=23% Similarity=0.337 Sum_probs=7.6
Q ss_pred HHHHHHHhcCcce
Q psy299 119 QICEFTKKKNVQF 131 (240)
Q Consensus 119 ~~~~~~~~~~~~f 131 (240)
.+.+.++..|...
T Consensus 103 ~l~~~l~~~Ga~i 115 (172)
T PRK12359 103 MLHDKLAPKGVKF 115 (172)
T ss_pred HHHHHHHhCCCeE
Confidence 4566666666654
No 402
>PF12396 DUF3659: Protein of unknown function (DUF3659) ; InterPro: IPR022124 This domain family is found in bacteria and eukaryotes, and is approximately 70 amino acids in length.
Probab=20.57 E-value=1.5e+02 Score=19.71 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=24.1
Q ss_pred EEEcCCCCeEEeccCCCCccchHHHHHHhcccCCCCcceeEEEEcCCCCeeee
Q psy299 170 FIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVER 222 (240)
Q Consensus 170 ~lID~~G~Iv~~~~~~~~~~~l~~~L~~ll~~~~i~~~~~~~~i~~~~~~~~~ 222 (240)
.++|.+|+++.+..-. + +++|. +..+ +=...++|++|.++=|
T Consensus 14 ~V~d~~G~~vG~vveG-d-------~k~L~-G~~v--d~~G~I~d~~G~viGk 55 (64)
T PF12396_consen 14 NVVDDDGNVVGRVVEG-D-------PKKLV-GKKV--DEDGDILDKDGNVIGK 55 (64)
T ss_pred eEECCCCCEEEEEecC-C-------HHHhc-CCcC--CCCCCEECCCCCEEEE
Confidence 5888888888775322 2 22222 2221 1156677788877755
No 403
>cd08156 catalase_clade_3 Clade 3 of the heme-binding enzyme catalase. Catalase is a ubiquitous enzyme found in both prokaryotes and eukaryotes, which is involved in the protection of cells from the toxic effects of peroxides. It catalyzes the conversion of hydrogen peroxide to water and molecular oxygen. Catalases also utilize hydrogen peroxide to oxidize various substrates such as alcohol or phenols. Clade 3 catalases are the most abundant subfamily and are found in all three kingdoms of life; they have a relatively small subunit size of 43 to 75 kDa, and bind a protoheme IX (heme b) group buried deep inside the structure. Clade 3 catalases also bind NADPH as a second redox-active cofactor. They form tetramers, and in eukaryotic cells, catalases are located in peroxisomes.
Probab=20.57 E-value=1.7e+02 Score=27.13 Aligned_cols=59 Identities=12% Similarity=0.097 Sum_probs=41.7
Q ss_pred ceEEEEcCCCCeEEec---c---C-------------CCCccchHHHHHHhcccCCC-CcceeEEEEcCCCCeeeeccC
Q psy299 167 FTKFIVDKNGVPVERH---A---A-------------NASPASLIPHIEILGRTSAI-KWNFTKFIVDKNGAPVERHAA 225 (240)
Q Consensus 167 P~~~lID~~G~Iv~~~---~---~-------------~~~~~~l~~~L~~ll~~~~i-~~~~~~~~i~~~~~~~~~~~~ 225 (240)
.++.+++++|+..+.- . | ..+++.+.++|-+-|+.+.. +|.+.-.|.+++-....+|.+
T Consensus 151 htf~~vn~~G~~~~Vk~h~~p~~G~~~l~~eea~~~~g~~~d~l~~dL~~~I~~G~~P~w~l~vQv~~~~d~~~~~f~~ 229 (429)
T cd08156 151 HTFSLVNAKGERFWVKFHFKTDQGIKNLTNEEAAELAGEDPDYAQRDLFEAIERGDFPSWTLYVQVMPEEDAEKYRFNP 229 (429)
T ss_pred ceEEEEcCCCCEEEEEEEEEeCCCCCCCCHHHHHHhhCCCCCHHHHHHHHHHhcCCCceEEEEEEEechhHhhcCCCCC
Confidence 4677999999877632 1 1 11445578888777765555 999999999998777666553
No 404
>PRK14318 glmM phosphoglucosamine mutase; Provisional
Probab=20.28 E-value=6.8e+02 Score=23.03 Aligned_cols=10 Identities=50% Similarity=0.624 Sum_probs=5.9
Q ss_pred EEEcCCCCeE
Q psy299 170 FIVDKNGVPV 179 (240)
Q Consensus 170 ~lID~~G~Iv 179 (240)
.++|.+|+++
T Consensus 249 ~~vd~~G~~l 258 (448)
T PRK14318 249 LAVDANGNVV 258 (448)
T ss_pred EEECCCCcEe
Confidence 5666666543
No 405
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=20.25 E-value=5e+02 Score=21.47 Aligned_cols=39 Identities=13% Similarity=0.203 Sum_probs=25.2
Q ss_pred HHHHHHHhhcCcEEEEeecCCCCCCCCCCHHHHHHHHHhcCcceeee
Q psy299 88 VELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLF 134 (240)
Q Consensus 88 ~~l~~~~~~~~v~vi~Vs~D~~~~~~~~~~e~~~~~~~~~~~~fp~~ 134 (240)
.+..+++.++|+.|+-.| . .....+..++++.++..|++
T Consensus 26 ~~ai~~~~~~G~~~~iaT-G-------R~~~~~~~~~~~l~~~~~~I 64 (272)
T PRK10530 26 LEALARAREAGYKVIIVT-G-------RHHVAIHPFYQALALDTPAI 64 (272)
T ss_pred HHHHHHHHHCCCEEEEEc-C-------CChHHHHHHHHhcCCCCCEE
Confidence 344455666788776664 2 25667788888888766554
No 406
>KOG1672|consensus
Probab=20.25 E-value=5.1e+02 Score=21.51 Aligned_cols=41 Identities=15% Similarity=-0.006 Sum_probs=32.9
Q ss_pred CCcEEEEEEecCCCCCcHHHHHHHHHHHHHHhhcCcEEEEeec
Q psy299 64 KGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106 (240)
Q Consensus 64 ~gk~vlv~F~atwCp~C~~~~~~L~~l~~~~~~~~v~vi~Vs~ 106 (240)
+..-|++.|+-..-.-|+-.-.+|..++++.- +..+|-|..
T Consensus 83 kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~--eTrFikvna 123 (211)
T KOG1672|consen 83 KSEKVVCHFYRPEFFRCKIMDKHLEILAKRHV--ETRFIKVNA 123 (211)
T ss_pred cCceEEEEEEcCCCcceehHHHHHHHHHHhcc--cceEEEEec
Confidence 34578899998888889988899999888766 478888864
No 407
>PF08394 Arc_trans_TRASH: Archaeal TRASH domain; InterPro: IPR013603 This region is found in the C terminus of a number of archaeal transcriptional regulators. It is thought to function as a metal-sensing regulatory module [].
Probab=20.11 E-value=1e+02 Score=18.21 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=14.1
Q ss_pred CCcEEEEEE----ecCCCCCcHHHHH
Q psy299 64 KGHVLVIVN----VASRCGYTGKHYK 85 (240)
Q Consensus 64 ~gk~vlv~F----~atwCp~C~~~~~ 85 (240)
.|+|+++.+ |...|+.|..++.
T Consensus 9 ~~eP~~~k~~~~~y~fCC~tC~~~fk 34 (37)
T PF08394_consen 9 TGEPIVVKIGNKVYYFCCPTCLSQFK 34 (37)
T ss_pred cCCEEEEEECCeEEEEECHHHHHHHH
Confidence 455665554 3456899987764
Done!