RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy299
(240 letters)
>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A
{Populus trichocarpa x populusdeltoides} PDB: 2p5r_A
Length = 170
Score = 277 bits (712), Expect = 3e-96
Identities = 87/166 (52%), Positives = 118/166 (71%), Gaps = 1/166 (0%)
Query: 34 MADDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEK 93
MA + KN E+V+DFTVK+ K DV LS +KG VL+IVNVAS+CG T +Y E+ +L EK
Sbjct: 1 MATQTSKNPESVHDFTVKDAKENDVDLSIFKGKVLLIVNVASKCGMTNSNYAEMNQLYEK 60
Query: 94 FRDRGLRILAFPCNQFGGQEPGDADQICEFTKKK-NVQFDLFEKINVNGDNAHPLWKFLK 152
++D+GL ILAFPCNQFG +EPG DQI +F + +F +F+KI+VNG+NA PL++FLK
Sbjct: 61 YKDQGLEILAFPCNQFGEEEPGTNDQITDFVCTRFKSEFPIFDKIDVNGENASPLYRFLK 120
Query: 153 HKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
+ G D I+WNF KF+V+K+G V+R+ SP SL I+ L
Sbjct: 121 LGKWGIFGDDIQWNFAKFLVNKDGQVVDRYYPTTSPLSLERDIKQL 166
>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase
(GPX4); human GPX4, selenoprotein, thioredoxin-fold,
anti-oxidatve defense system; 1.55A {Homo sapiens}
Length = 183
Score = 275 bits (706), Expect = 3e-95
Identities = 80/166 (48%), Positives = 112/166 (67%), Gaps = 2/166 (1%)
Query: 35 ADDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKF 94
+ D W+ A ++++F+ K+I G V L Y+G V ++ NVAS+CG T +Y +LV+L ++
Sbjct: 17 SRDDWRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQCGKTEVNYTQLVDLHARY 76
Query: 95 RDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLK-- 152
+ GLRILAFPCNQFG QEPG ++I EF NV+FD+F KI VNGD+AHPLWK++K
Sbjct: 77 AECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWMKIQ 136
Query: 153 HKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
K G L +AIKWNFTKF++DKNG V+R+ P + +
Sbjct: 137 PKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 182
>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase,
lipid peroxidase, schistosoma detoxification pathway;
1.00A {Schistosoma mansoni} PDB: 2wgr_A
Length = 169
Score = 271 bits (696), Expect = 8e-94
Identities = 85/166 (51%), Positives = 116/166 (69%), Gaps = 2/166 (1%)
Query: 34 MADDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEK 93
M+ S K+ ++Y+FTVK+I G DV L Y+GHV +IVNVA +CG T K+Y++L E+ +
Sbjct: 1 MSS-SHKSWNSIYEFTVKDINGVDVSLEKYRGHVCLIVNVACKCGATDKNYRQLQEMHTR 59
Query: 94 FRDRGLRILAFPCNQFGGQEPGDADQICEFTKKK-NVQFDLFEKINVNGDNAHPLWKFLK 152
+GLRILAFPCNQFGGQEP +I +F +K VQFD+F KI VNG +A L+KFLK
Sbjct: 60 LVGKGLRILAFPCNQFGGQEPWAEAEIKKFVTEKYGVQFDMFSKIKVNGSDADDLYKFLK 119
Query: 153 HKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
+Q GTL + IKWNF+KF+VD+ G PV+R++ +P + I L
Sbjct: 120 SRQHGTLTNNIKWNFSKFLVDRQGQPVKRYSPTTAPYDIEGDIMEL 165
>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase;
GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}
Length = 185
Score = 271 bits (696), Expect = 1e-93
Identities = 78/169 (46%), Positives = 111/169 (65%), Gaps = 2/169 (1%)
Query: 32 TSMADDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELD 91
++ S + A ++++F+ K+I G V L Y+G V ++ NVAS+ G T +Y +LV+L
Sbjct: 16 ENLYFQSMRCARSMHEFSAKDIDGHMVNLDKYRGFVCIVTNVASQGGKTEVNYTQLVDLH 75
Query: 92 EKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFL 151
++ + GLRILAFPCNQFG QEPG ++I EF NV+FD+F KI VNGD+AHPLWK++
Sbjct: 76 ARYAECGLRILAFPCNQFGKQEPGSNEEIKEFAAGYNVKFDMFSKICVNGDDAHPLWKWM 135
Query: 152 K--HKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
K K G L +AIKWNFTKF++DKNG V+R+ P + +
Sbjct: 136 KIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPMEEPLVIEKDLPHY 184
>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA)
sandwich, glutaredoxin fold, oxidoreductase; 1.41A
{Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A
Length = 187
Score = 268 bits (688), Expect = 2e-92
Identities = 71/168 (42%), Positives = 103/168 (61%), Gaps = 2/168 (1%)
Query: 33 SMADDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDE 92
+ A +++DF V + + L +KG L+I NVAS+CGYT Y+ L
Sbjct: 14 RSSRKKMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTLYN 73
Query: 93 KFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKK-NVQFDLFEKINVNGDNAHPLWKFL 151
K++ +G +LAFP NQFGGQEPG+ ++I EF K +F + KINVNG+NAHPL++++
Sbjct: 74 KYKSQGFTVLAFPSNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYEYM 133
Query: 152 KHKQGGTL-VDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
K + G L AIKWNFT F++D++GVPVER + AS + + L
Sbjct: 134 KKTKPGILATKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEEKLIPL 181
>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione,
dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}
Length = 190
Score = 268 bits (688), Expect = 2e-92
Identities = 72/170 (42%), Positives = 103/170 (60%), Gaps = 2/170 (1%)
Query: 31 FTSMADDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVEL 90
A +++DF V + + L +KG L+I NVAS+CGYT Y+ L
Sbjct: 14 LVPRGGSHMSAASSIFDFEVLDADHKPYNLVQHKGSPLLIYNVASKCGYTKGGYETATTL 73
Query: 91 DEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKK-NVQFDLFEKINVNGDNAHPLWK 149
K++ +G +LAFPCNQFGGQEPG+ ++I EF K +F + KINVNG+NAHPL++
Sbjct: 74 YNKYKSQGFTVLAFPCNQFGGQEPGNEEEIKEFVCTKFKAEFPIMAKINVNGENAHPLYE 133
Query: 150 FLKHKQGGTL-VDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
++K + G L AIKWNFT F++D++GVPVER + AS + + L
Sbjct: 134 YMKKTKPGILKTKAIKWNFTSFLIDRDGVPVERFSPGASVKDIEKKLIPL 183
>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX,
phospholipid hydroperoxidase, struc genomics, structural
genomics consortium, SGC; 2.00A {Homo sapiens}
Length = 181
Score = 259 bits (665), Expect = 4e-89
Identities = 62/169 (36%), Positives = 86/169 (50%), Gaps = 5/169 (2%)
Query: 31 FTSMADDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVEL 90
++ S + + YDF NI+G+ V L Y+G V ++VNVAS CG+T +HY+ L +L
Sbjct: 15 TENLYFQSMQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQL 74
Query: 91 DEKFRDRGLRILAFPCNQFGGQEPGDADQICEF-TKKKNVQFDLFEKINVNGDNAHPLWK 149
+LAFPCNQFG QEP +I F + +V F +F KI V G AHP +K
Sbjct: 75 QRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFK 134
Query: 150 FLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
+L G WNF K++V +G V S + P I L
Sbjct: 135 YLAQTSG----KEPTWNFWKYLVAPDGKVVGAWDPTVSVEEVRPQITAL 179
>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane,
oxidoreductase, transmembrane; 1.80A {Homo sapiens} PDB:
3cyn_A
Length = 180
Score = 257 bits (660), Expect = 3e-88
Identities = 56/172 (32%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Query: 28 VYDFTSMADDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKEL 87
++ + Y F VK+ KG V L YKG V ++VNVAS C T ++Y L
Sbjct: 1 MHHHHHHMKFLKPKINSFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGL 60
Query: 88 VELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEF-TKKKNVQFDLFEKINVNGDNAHP 146
EL ++F +LAFPCNQFG EP + ++ F K V F +F KI + G P
Sbjct: 61 KELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEP 120
Query: 147 LWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
++FL +WNF K++V+ G V+ + P I L
Sbjct: 121 AFRFLVDSSKK----EPRWNFWKYLVNPEGQVVKFWRPEEPIEVIRPDIAAL 168
>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics,
structural genomics consortium, SGC, oxidoreductase;
1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A
Length = 208
Score = 253 bits (647), Expect = 6e-86
Identities = 65/215 (30%), Positives = 98/215 (45%), Gaps = 29/215 (13%)
Query: 33 SMADDSWKNAETVYDFTVKNIKG-EDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELD 91
+ +++ ++VY F+ + + G E V L + +G VL+I NVAS G T + Y ++ EL
Sbjct: 14 GTENLYFQSMQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQ 73
Query: 92 EKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKK------NVQFDLFEKINVNGDNAH 145
+ RGL +L FPCNQFG QE ++I K F LFEK VNG AH
Sbjct: 74 RRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAH 133
Query: 146 PLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIK 205
PL+ FL+ DA ++ + V + +
Sbjct: 134 PLFAFLREALPAPSDDATALMTDPKLITWSPV----------------------CRNDVA 171
Query: 206 WNFTKFIVDKNGAPVERHAANASPASLIPNIEKYL 240
WNF KF+V +G P+ R++ + P+IE L
Sbjct: 172 WNFEKFLVGPDGVPLRRYSRRFQTIDIEPDIEALL 206
>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase,
peroxidase, redox-ACT center; 2.02A {Saccharomyces
cerevisiae}
Length = 171
Score = 243 bits (622), Expect = 2e-82
Identities = 72/167 (43%), Positives = 101/167 (60%), Gaps = 3/167 (1%)
Query: 34 MADDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEK 93
M + Y + KG+ P KG V++IVNVAS+CG+T YKEL L ++
Sbjct: 1 MGHHHHHHMSEFYKLAPVDKKGQPFPFDQLKGKVVLIVNVASKCGFT-PQYKELEALYKR 59
Query: 94 FRDRGLRILAFPCNQFGGQEPGDADQICEFTKKK-NVQFDLFEKINVNGDNAHPLWKFLK 152
++D G I+ FPCNQFG QEPG ++I +F + V F + +KI+VNG N P++KFLK
Sbjct: 60 YKDEGFTIIGFPCNQFGHQEPGSDEEIAQFCQLNYGVTFPIMKKIDVNGGNEDPVYKFLK 119
Query: 153 HKQGGTL-VDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
++ G L + IKWNF KF+VDK G ER+++ P+SL IE L
Sbjct: 120 SQKSGMLGLRGIKWNFEKFLVDKKGKVYERYSSLTKPSSLSETIEEL 166
>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold,
epididymal androgen related protein, struc genomics,
structural genomics consortium; 2.00A {Homo sapiens}
Length = 215
Score = 240 bits (615), Expect = 6e-81
Identities = 69/208 (33%), Positives = 92/208 (44%), Gaps = 24/208 (11%)
Query: 14 HYSMADDSWKNAETVYDFTSMA-DDSWKNAETVYDFTVKNI-KGEDVPLSTYKGHVLVIV 71
H+ F SM D T+YD+ + K E V Y G ++ V
Sbjct: 3 HHHHHSSGVDLGTENLYFQSMKMDCHKDEKGTIYDYEAIALNKNEYVSFKQYVGKHILFV 62
Query: 72 NVASRCGYTGKHYKELVELDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKK---- 127
NVA+ CG T Y EL L E+ + GL +L FPCNQFG QEPGD +I K
Sbjct: 63 NVATYCGLT-AQYPELNALQEELKPYGLVVLGFPCNQFGKQEPGDNKEILPGLKYVRPGG 121
Query: 128 --NVQFDLFEKINVNGDNAHPLWKFLKHKQGGT---------------LVDAIKWNFTKF 170
F LFEK +VNG+ ++ FLKH V I+WNF KF
Sbjct: 122 GFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKF 181
Query: 171 IVDKNGVPVERHAANASPASLIPHIEIL 198
+V +G+PV R + A+ +S+ I
Sbjct: 182 LVGPDGIPVMRWSHRATVSSVKTDILAY 209
>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort
oxidoreductase, secreted, selenium, selenocysteine;
1.85A {Homo sapiens}
Length = 207
Score = 231 bits (592), Expect = 1e-77
Identities = 65/196 (33%), Positives = 92/196 (46%), Gaps = 24/196 (12%)
Query: 32 TSMADDSWKNAETVYDFTVKNIKGED-VPLSTYKGHVLVIVNVASRCGYTGKHYKELVEL 90
S D + T+Y++ I GE+ +P Y G ++ VNVAS G T Y EL L
Sbjct: 4 KSKMDCHGGISGTIYEYGALTIDGEEYIPFKQYAGKYVLFVNVASYGGLT-GQYIELNAL 62
Query: 91 DEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKK------NVQFDLFEKINVNGDNA 144
E+ GL IL FPCNQFG QEPG+ +I K F LFEK +VNG+
Sbjct: 63 QEELAPFGLVILGFPCNQFGKQEPGENSEILPTLKYVRPGGGFVPNFQLFEKGDVNGEKE 122
Query: 145 HPLWKFLKHKQGGTL---------------VDAIKWNFTKFIVDKNGVPVERHAANASPA 189
+ FLK+ T V I+WNF KF+V +G+P+ R + +
Sbjct: 123 QKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVGPDGIPIMRWHHRTTVS 182
Query: 190 SLIPHIE-ILGRTSAI 204
++ I + R +A+
Sbjct: 183 NVKMDILSYMRRQAAL 198
>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II,
structural genomics, protein structure initiative; 1.66A
{Chlorobaculum tepidum}
Length = 165
Score = 56.2 bits (136), Expect = 4e-10
Identities = 25/151 (16%), Positives = 52/151 (34%), Gaps = 20/151 (13%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
F+ + G+ ++ KG IVN A+ C ++V++ + + RG +
Sbjct: 16 SFSGVTVDGKPFSSASLKGKA-YIVNFFATWCPPCRSEIPDMVQVQKTWASRGFTFVGIA 74
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
N+ + + K + + + V + F + GG + I
Sbjct: 75 VNE-------QLPNVKNYMKTQGIIYP------VMMATPELIRAFNGYIDGG--ITGIP- 118
Query: 166 NFTKFIVDKNGVPVERHAANASPASLIPHIE 196
T F++D +G S A ++
Sbjct: 119 --TSFVIDASGNVSGVIVGPRSKADFDRIVK 147
>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2,
protein struct initiative; NMR {Neisseria meningitidis
serogroup B}
Length = 153
Score = 51.2 bits (123), Expect = 2e-08
Identities = 18/153 (11%), Positives = 50/153 (32%), Gaps = 24/153 (15%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
F++ ++ G+ V + +G V ++N C ++++ ++++ ++LA
Sbjct: 10 AFSLPDLHGKTVSNADLQGKV-TLINFWFPSCPGCVSEMPKIIKTANDYKNKNFQVLAVA 68
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
+ + ++ K + F V D + +
Sbjct: 69 QPID------PIESVRQYVKDYGLPF------TVMYDADKAVGQAFG-------TQVYP- 108
Query: 166 NFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
T ++ K G ++ + L I+
Sbjct: 109 --TSVLIGKKGEILKTYVGEPDFGKLYQEIDTA 139
>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET:
MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB:
1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A
3c73_A
Length = 151
Score = 50.3 bits (121), Expect = 3e-08
Identities = 23/153 (15%), Positives = 56/153 (36%), Gaps = 25/153 (16%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
+F +++ G+ + LS KG V +N + C K + + + F+ +G+ I+A
Sbjct: 8 NFVLEDTNGKRIELSDLKGKG-VFLNFWGTWCEPCKKEFPYMANQYKHFKSQGVEIVAVN 66
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
+ + F K V F + ++ + V +
Sbjct: 67 VGE-------SKIAVHNFMKSYGVNFPVV--LDTDRQVL---------DAYD--VSPLP- 105
Query: 166 NFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
T F+++ G V+ + + + ++ ++
Sbjct: 106 --TTFLINPEGKVVKVVTGTMTESMIHDYMNLI 136
>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like
fold, RESA-like fold, dithiol, STOA, redox-active
center; 2.50A {Bacillus subtilis}
Length = 145
Score = 49.2 bits (118), Expect = 7e-08
Identities = 24/151 (15%), Positives = 54/151 (35%), Gaps = 23/151 (15%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
F +K I+GED+ + KG I++ S C K + + ++++
Sbjct: 17 VFLMKTIEGEDISIP-NKGQK-TILHFWTSWCPPCKKELPQFQSFYDAHPSDSVKLVTV- 73
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
N ++ + + +F K + F + ++ G+ K+ + I
Sbjct: 74 -NLVNSEQ--NQQVVEDFIKANKLTFPIV--LDSKGELM---------KEYH--IITIP- 116
Query: 166 NFTKFIVDKNGVPVERHAANASPASLIPHIE 196
T F++++ G + + L E
Sbjct: 117 --TSFLLNEKGEIEKTKIGPMTAEQLKEWTE 145
>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein
structure initiative; 2.00A {Neisseria meningitidis
serogroup B}
Length = 151
Score = 49.3 bits (118), Expect = 8e-08
Identities = 23/151 (15%), Positives = 46/151 (30%), Gaps = 21/151 (13%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
D L + K V IVN+ A+ CG K + + + + + ++
Sbjct: 6 DELAGWKDNTPQSLQSLKAPV-RIVNLWATWCGPCRKEMPAMSKWYKAQKKGSVDMVGIA 64
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
+ +D I F K+ V + ++ G N+ K G V +
Sbjct: 65 LD--------TSDNIGNFLKQTPVSYPIW---RYTGANSRNFMKTY-----GNTVGVLP- 107
Query: 166 NFTKFIVDKNGVPVERHAANASPASLIPHIE 196
+ + + SL ++
Sbjct: 108 --FTVVEAPKCGYRQTITGEVNEKSLTDAVK 136
>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB
struct genomics consortium, TBSGC, unknown function;
1.90A {Mycobacterium tuberculosis}
Length = 352
Score = 50.4 bits (120), Expect = 1e-07
Identities = 16/156 (10%), Positives = 47/156 (30%), Gaps = 20/156 (12%)
Query: 44 TVYDFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRIL 102
+ + + L + +G V V+++ A C + +V + ++D GL ++
Sbjct: 61 KGITGWLNTPGNKPIDLKSLRGKV-VLIDFWAYSCINCQRAIPHVVGWYQAYKDSGLAVI 119
Query: 103 AFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDA 162
++ ++ + + + + + DN + W +
Sbjct: 120 GVHTPEYAFEK--VPGNVAKGAANLGISYP------IALDNNYATWTNYR-------NRY 164
Query: 163 IKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
++++D G + L
Sbjct: 165 WP---AEYLIDATGTVRHIKFGEGDYNVTETLVRQL 197
>2lrn_A Thiol:disulfide interchange protein; structural genomics,
thioredoxin-like, NEW YORK structural G research
consortium, oxidoreductase; NMR {Bacteroides SP}
Length = 152
Score = 48.1 bits (115), Expect = 2e-07
Identities = 21/138 (15%), Positives = 49/138 (35%), Gaps = 22/138 (15%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
T ++KG V L+ +KG V+V+ + C + K L++ F+D+G I
Sbjct: 11 AITGIDLKGNSVSLNDFKGKY-VLVDFWFAGCSWCRKETPYLLKTYNAFKDKGFTIYGVS 69
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
++ + + ++ + ++ + D+ + + +
Sbjct: 70 TDR-------REEDWKKAIEEDKSY---WNQVLLQKDDVKDVLESYC-------IVGFP- 111
Query: 166 NFTKFIVDKNGVPVERHA 183
+VD G V +
Sbjct: 112 --HIILVDPEGKIVAKEL 127
>4evm_A Thioredoxin family protein; structural genomics, niaid, national
institute of allergy AN infectious diseases; 1.51A
{Streptococcus pneumoniae}
Length = 138
Score = 47.3 bits (113), Expect = 3e-07
Identities = 27/154 (17%), Positives = 53/154 (34%), Gaps = 20/154 (12%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
DF + + G+ LS YKG V + AS C + E+ ++ D + +
Sbjct: 4 DFELMGVDGKTYRLSDYKGKK-VYLKFWASWCSICLASLPDTDEIAKEAGDDYVVLTV-- 60
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
G + + K + + + V D + L + V +
Sbjct: 61 -VSPGHKGEQSEADFKNWYKGLDY-----KNLPVLVDPSGKLLETYG-------VRSYP- 106
Query: 166 NFTKFIVDKNGVPVERHAANASPASLIPHIEILG 199
T+ +DK G V+ H +++ ++ L
Sbjct: 107 --TQAFIDKEGKLVKTHPGFMEKDAILQTLKELA 138
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics,
unknown function, thioredoxin-like; NMR {Bacteroides
vulgatus}
Length = 152
Score = 46.9 bits (112), Expect = 5e-07
Identities = 26/155 (16%), Positives = 56/155 (36%), Gaps = 25/155 (16%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
F+ +I G+ V L+ KG + ++V A+ CG L EL+EK+ + + ++
Sbjct: 12 SFSYPDINGKTVSLADLKGKY-IYIDVWATWCGPCRGELPALKELEEKYAGKDIHFVSLS 70
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
C++ + K ++ I ++ ++ I
Sbjct: 71 CDK-------NKKAWENMVTKDQLKG-----IQLHMGTDRTFMDAYL-------INGIP- 110
Query: 166 NFTKFIVDKNGVPVERHAANASPASLIPHI-EILG 199
++D++G + + S E+LG
Sbjct: 111 --RFILLDRDGKIISANMTRPSDPKTAEKFNELLG 143
>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double
disulfide bridge, membrane protein; 1.60A
{Bradyrhizobium japonicum} SCOP: c.47.1.10
Length = 186
Score = 47.5 bits (113), Expect = 5e-07
Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 19/145 (13%)
Query: 39 WKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDR 97
+ D ++ G+ LS ++G ++VN+ A+ C K L EL K
Sbjct: 34 ASAPLKLPDLAFEDADGKPKKLSDFRGKT-LLVNLWATWCVPCRKEMPALDELQGKLSGP 92
Query: 98 GLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGG 157
++A + D ++ F K+ N+ + D +++ LK
Sbjct: 93 NFEVVAI------NIDTRDPEKPKTFLKEANLTR-----LGYFNDQKAKVFQDLKAIGR- 140
Query: 158 TLVDAIKWNFTKFIVDKNGVPVERH 182
+ T +VD G +
Sbjct: 141 --ALGMP---TSVLVDPQGCEIATI 160
>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW
YORK structural G research consortium, nysgrc,
PSI-biology; NMR {Bacteroides vulgatus}
Length = 152
Score = 46.2 bits (110), Expect = 9e-07
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILA 103
D +K++KG L+ KG V V+++ + H L EL K+ +G I
Sbjct: 17 DIQLKDLKGNTRSLTDLKGKV-VLIDFTVYNNAMSAAHNLALRELYNKYASQGFEIYQ 73
>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
hypothetical protein; 2.05A {Sinorhizobium meliloti}
Length = 218
Score = 47.0 bits (112), Expect = 1e-06
Identities = 15/86 (17%), Positives = 34/86 (39%), Gaps = 1/86 (1%)
Query: 47 DFTVKNIKGEDVPLSTYKG-HVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
DF + + G L+ +K L++ +++RC + + L + + +GL ++A
Sbjct: 40 DFVLPDAGGNLFTLAEFKDSPALLVAFISNRCPFVVLIREALAKFAGDYAGQGLAVVAIN 99
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQF 131
N +++ K F
Sbjct: 100 SNDAQAFPEETLERVGAEVKAYGYGF 125
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI,
structural genomics, protein initiative; 2.45A
{Geobacter metallireducens gs-15}
Length = 154
Score = 45.8 bits (109), Expect = 1e-06
Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 26/153 (16%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
DFT+ + GE V LS KG V VIVN A+ C + ++ L+ + R+L
Sbjct: 10 DFTLNTLNGEVVKLSDLKGQV-VIVNFWATWCPPCREEIPSMMRLNAAMAGKPFRMLCV- 67
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
+ G + EF +K + ++ + K G +
Sbjct: 68 -----SIDEGGKVAVEEFFRKTGFTLPVL--LDADKRVG---------KLYG--TTGVP- 108
Query: 166 NFTKFIVDKNGVPVERH--AANASPASLIPHIE 196
F++D++GV +++ A +I +
Sbjct: 109 --ETFVIDRHGVILKKVVGAMEWDHPEVIAFLN 139
>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily
protein SPOA0173, silicibacter DSS, structural genomics,
PSI-2; 1.95A {Silicibacter pomeroyi}
Length = 158
Score = 45.5 bits (108), Expect = 2e-06
Identities = 20/156 (12%), Positives = 44/156 (28%), Gaps = 17/156 (10%)
Query: 47 DFTVKNI--KGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHY-KELVELDEKFRDRGLRIL 102
+ ++ D+ L+ +G V +++ C H ++ F + + +L
Sbjct: 8 ELQIQQWFNSATDLTLADLRGKV-IVIEAFQMLCPGCVMHGIPLAQKVRAAFPEDKVAVL 66
Query: 103 AFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDA 162
+ + F + ++F V D +
Sbjct: 67 GLHTVFEHHEA-MTPISLKAFLHEYRIKFP------VGVDQPGDGAMPRTMAAYQ--MRG 117
Query: 163 IKWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
+ ++DK G H + S L I L
Sbjct: 118 TP---SLLLIDKAGDLRAHHFGDVSELLLGAEIATL 150
>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural
genomics, midwest CE structural genomics; HET: MSE;
2.20A {Corynebacterium glutamicum}
Length = 160
Score = 45.2 bits (107), Expect = 2e-06
Identities = 17/155 (10%), Positives = 46/155 (29%), Gaps = 15/155 (9%)
Query: 47 DFTVKN-IKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYK-ELVELDEKFRDRGLRILA 103
+ V+ + E + +G V V+V V C H + ++ + ++++
Sbjct: 11 ELDVQEWVNHEGLSNEDLRGKV-VVVEVFQMLCPGCVNHGVPQAQKIHRMIDESQVQVIG 69
Query: 104 FPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAI 163
+ + F + ++F + + G K + ++
Sbjct: 70 LHSVFEHHDV-MTPEALKVFIDEFGIKFPVAVDMPREGQRIPSTMKKYR-------LEGT 121
Query: 164 KWNFTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
+ + D+ G + L + L
Sbjct: 122 P---SIILADRKGRIRQVQFGQVDDFVLGLLLGSL 153
>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB;
reduced, thiol-disulfide exchange, oxidoreductase; 1.60A
{Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A
Length = 164
Score = 45.1 bits (107), Expect = 3e-06
Identities = 18/163 (11%), Positives = 45/163 (27%), Gaps = 19/163 (11%)
Query: 35 ADDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEK 93
D+ T+K + K ++ AS C + + +
Sbjct: 8 IVDAGTATVPHTMSTMKTADNRPASVYLKKDKP-TLIKFWASWCPLCLSELGQAEKWAQD 66
Query: 94 FRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKH 153
+ ++ F ++ + ++ N K+ V DN + + L
Sbjct: 67 AKFSSANLITVASPGFLHEK--KDGEFQKWYAGLNYP-----KLPVVTDNGGTIAQNLN- 118
Query: 154 KQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIE 196
+ + ++ K+G + + A + I
Sbjct: 119 ------ISVYP---SWALIGKDGDVQRIVKGSINEAQALALIR 152
>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase,
PSI-II, structural genomics, protein structure
initiative; 2.09A {Chlorobium tepidum tls}
Length = 152
Score = 44.6 bits (106), Expect = 4e-06
Identities = 27/137 (19%), Positives = 54/137 (39%), Gaps = 26/137 (18%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
DF + G V LS G V V ++ AS CG + + + ++ K++ +G +++A
Sbjct: 11 DFALPGKTGV-VKLSDKTGSV-VYLDFWASWCGPCRQSFPWMNQMQAKYKAKGFQVVAVN 68
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
+ +F + +F + + G L+ V +
Sbjct: 69 LDA-------KTGDAMKFLAQVPAEFTVA--FDPKGQTPR-LYG----------VKGMP- 107
Query: 166 NFTKFIVDKNGVPVERH 182
T F++D+NG + +H
Sbjct: 108 --TSFLIDRNGKVLLQH 122
>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural
genomics, PSI-2, protein structure initiative; 1.77A
{Geobacter metallireducens gs-15}
Length = 158
Score = 44.6 bits (106), Expect = 4e-06
Identities = 30/155 (19%), Positives = 57/155 (36%), Gaps = 30/155 (19%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
+F + + GE+ L+ Y+G + V+VN AS C Y + L + F L +LA
Sbjct: 23 NFKLPTLSGENKSLAQYRGKI-VLVNFWASWCPYCRDEMPSMDRLVKSFPKGDLVVLAV- 80
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
N + E ++ V F+ + G + + +
Sbjct: 81 -NV--------EKRFPEKYRRAPVSFNFL--SDATGQVQQ-RYG----------ANRLP- 117
Query: 166 NFTKFIVDKNGVPVERH--AANASPASLIPHIEIL 198
FIVD+ G+ +R ++ +++ L
Sbjct: 118 --DTFIVDRKGIIRQRVTGGIEWDAPKVVSYLKSL 150
>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga
hutchinsoni structural genomics, PSI-2, protein
structure initiative; 1.88A {Cytophaga hutchinsonii}
Length = 148
Score = 43.5 bits (103), Expect = 7e-06
Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 24/139 (17%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
+ + + G L + I+ S+CG+ + +L + K R +G+++ A
Sbjct: 13 NLYMTDTTGTYRYLYDVQAKY-TILFFWDSQCGHCQQETPKLYDWWLKNRAKGIQVYAAN 71
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINV-NGDNAHPLWKFLKHKQGGTLVDAIK 164
+ ++ +F + K + +NV + N + A
Sbjct: 72 IER-------KDEEWLKFIRSKKIGG----WLNVRDSKNHTDFKITYD-------IYATP 113
Query: 165 WNFTKFIVDKNGVPVERHA 183
+++DKN V + +
Sbjct: 114 ---VLYVLDKNKVIIAKRI 129
>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold,
structural genomics, PSI-2, protein structu initiative;
2.00A {Bacteroides fragilis}
Length = 142
Score = 41.9 bits (99), Expect = 3e-05
Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 5/61 (8%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGY---TGKHYKELVELDEKFRDRGLRIL 102
DFT + G++ +S K ++ C K + E+ E + LR+L
Sbjct: 9 DFTYVTVHGDNSRMSRLKAQY-TMLFFYDPDCSNCRKFEKLFAEIPAFVEMVENGTLRVL 67
Query: 103 A 103
A
Sbjct: 68 A 68
>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus
subtilis} SCOP: c.47.1.10 PDB: 2b5y_A
Length = 148
Score = 41.9 bits (99), Expect = 3e-05
Identities = 19/140 (13%), Positives = 48/140 (34%), Gaps = 23/140 (16%)
Query: 47 DFTVKN--IKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILA 103
+ T + + GE +++ + C + ++ E +K++D L ++A
Sbjct: 9 ELTGEKAWLNGEVTREQLIGEKP-TLIHFWSISCHLCKEAMPQVNEFRDKYQD-QLNVVA 66
Query: 104 FPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAI 163
+ ++ D +I E + ++ + D+ H L + + +
Sbjct: 67 V--HMPRSEDDLDPGKIKETAAEHDITQ------PIFVDSDHALTDAFE-------NEYV 111
Query: 164 KWNFTKFIVDKNGVPVERHA 183
++ DK G A
Sbjct: 112 P---AYYVFDKTGQLRHFQA 128
>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G
midwest center for structural genomics, protein
structure initiative; 1.70A {Aeropyrum pernix}
Length = 165
Score = 42.1 bits (99), Expect = 4e-05
Identities = 27/147 (18%), Positives = 47/147 (31%), Gaps = 27/147 (18%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAF- 104
F++ I GE + L+ G V VI+ A+ C L L EK+R+ + + F
Sbjct: 19 SFSLTTIDGEVISLNNVGGDV-VILWFMAAWCPSCVYMADLLDRLTEKYREISVIAIDFW 77
Query: 105 --------PCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQG 156
N+ G P + +F + + L +
Sbjct: 78 TAEALKALGLNKPGYPPPDTPEMFRKFIANYGDPSW------IMVMDDGSLVEKFN---- 127
Query: 157 GTLVDAIKWNFTKFIVDKNGVPVERHA 183
V +I I+DK+ +
Sbjct: 128 ---VRSID---YIVIMDKSSNVLYAGT 148
>2ls5_A Uncharacterized protein; structural genomics, unknown function,
thioredoxin-like, NEW structural genomics research
consortium; NMR {Bacteroides thetaiotaomicron}
Length = 159
Score = 41.6 bits (98), Expect = 4e-05
Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 21/138 (15%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
DFT+ G+ V LS+ +G V V++ AS CG K + +
Sbjct: 15 DFTITLTDGKQVTLSSLRGKV-VMLQFTASWCGVCRKEMPFIEKDIWLKHKDNADFALIG 73
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
++ +++ F K V + L ++ D + I
Sbjct: 74 IDR-----DEPLEKVLAFAKSTGVTYPLG--LDPGADIF---------AKYALRDAGIT- 116
Query: 166 NFTKFIVDKNGVPVERHA 183
++D+ G V+
Sbjct: 117 --RNVLIDREGKIVKLTR 132
>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural
genomics, joint center F structural genomics, JCSG;
2.02A {Parabacteroides distasonis}
Length = 143
Score = 40.5 bits (95), Expect = 9e-05
Identities = 19/151 (12%), Positives = 42/151 (27%), Gaps = 25/151 (16%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
+ G ++N A+ + +L KF + + +
Sbjct: 15 RIEFLGNDAK-ASFHNQLGRY-TLLNFWAAYDAESRARNVQLANEVNKFGPDKIAMCSIS 72
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
++ E K + + + L+K +
Sbjct: 73 MDE-------KESIFTETVKIDKLDLST--QFHEGLGKESELYKKYD-------LRKG-- 114
Query: 166 NFTKFIVDKNGVPVERHAANASPASLIPHIE 196
F F+++ GV + AAN +P L ++
Sbjct: 115 -FKNFLINDEGVII---AANVTPEKLTEILK 141
>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural
genomics, protein S initiative, midwest center for
structural genomics; HET: MSE; 1.30A {Bacteroides
fragilis}
Length = 142
Score = 39.3 bits (92), Expect = 2e-04
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGY---TGKHYKELVELDEKFRDRGLRIL 102
+FT G L + ++ + C + K ++ + L++L
Sbjct: 13 NFTYTLDSGVKGTLYQFPAEY-TLLFINNPGCHACAEMIEGLKASPVINGFTAAKKLKVL 71
Query: 103 A 103
+
Sbjct: 72 S 72
>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2,
structure initiative, midwest center for structural
genomic oxidoreductase; 2.20A {Bacteroides fragilis}
Length = 148
Score = 39.2 bits (92), Expect = 3e-04
Identities = 23/145 (15%), Positives = 50/145 (34%), Gaps = 33/145 (22%)
Query: 47 DFTVKNIKGEDVPLST--YKGHVLVIVNV-ASRCGYTGKHYKELVELDEKF-RDRGLRIL 102
F++ N KGE + S ++ +++N AS C + EL L++++ +++ +L
Sbjct: 13 YFSLPNEKGEKLSRSAERFRNRY-LLLNFWASWCDPQPEANAELKRLNKEYKKNKNFAML 71
Query: 103 AFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDA 162
+ D + KK + W + G + A
Sbjct: 72 GISLDI-------DREAWETAIKKDTLS-----------------WDQVCDFTGLSSETA 107
Query: 163 IKWNF----TKFIVDKNGVPVERHA 183
++ T ++ G + R
Sbjct: 108 KQYAILTLPTNILLSPTGKILARDI 132
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural
genomics, PSI, protein structure initiative; 1.12A
{Mycobacterium tuberculosis} SCOP: c.47.1.10
Length = 136
Score = 38.4 bits (90), Expect = 4e-04
Identities = 20/155 (12%), Positives = 36/155 (23%), Gaps = 29/155 (18%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
FT + G ++ +G ++ C + L ++ + +
Sbjct: 6 QFTATTLSGAPFDGASLQGKP-AVLWFWTPWCPFCNAEAPSLSQVAAAN--PAVTFVGIA 62
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
D + F K N+ F D +W V
Sbjct: 63 TRA-------DVGAMQSFVSKYNLNFTNLN------DADGVIWARYN-------VPWQP- 101
Query: 166 NFTKFIVDKNG--VPVERHAANASPASLIPHIEIL 198
+G V A S L + L
Sbjct: 102 --AFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL 134
>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin;
2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10
Length = 144
Score = 37.7 bits (88), Expect = 8e-04
Identities = 13/59 (22%), Positives = 19/59 (32%), Gaps = 3/59 (5%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKF-RDRGLRILA 103
T K +V L + G V + AS C L E EK + ++
Sbjct: 10 GATNLLSKSGEVSLGSLVGKT-VFLYFSASWCPPCRGFTPVLAEFYEKHHVAKNFEVVL 67
>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG,
structural genomics, midwest center for structural
genomics; 1.75A {Corynebacterium glutamicum}
Length = 183
Score = 38.2 bits (89), Expect = 9e-04
Identities = 23/157 (14%), Positives = 42/157 (26%), Gaps = 27/157 (17%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRG------L 99
+G + LS ++ V VI+N C +L + E+ + G
Sbjct: 41 GGDSLMEEGTQINLSDFENQV-VILNAWGQWCAPCRSESDDLQIIHEELQAAGNGDTPGG 99
Query: 100 RILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTL 159
+L D +F + + + A L GG
Sbjct: 100 TVLGI------NVRDYSRDIAQDFVTDNGLDYPSI--YDPPFMTAASL--------GGVP 143
Query: 160 VDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIE 196
I T ++DK P + ++
Sbjct: 144 ASVIP---TTIVLDKQHRPAAVFLREVTSKDVLDVAL 177
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein
structure initiative, TB structural genomics consortium,
TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP:
c.47.1.10 PDB: 3ios_A
Length = 136
Score = 37.3 bits (87), Expect = 9e-04
Identities = 22/166 (13%), Positives = 38/166 (22%), Gaps = 53/166 (31%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
F+ K + G D + G ++ A C + ++
Sbjct: 7 QFSAKTLDGHDFHGESLLGKP-AVLWFWAPWCPTCQGEAPVVGQVAASH----------- 54
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVN-GDNAHPLWKFLKHKQGGT---LVD 161
V F + V D + +F+ T L D
Sbjct: 55 ---------------------PEVTF-----VGVAGLDQVPAMQEFVNKYPVKTFTQLAD 88
Query: 162 -----AIKWNF----TKFIVDKNGVPVERHAANASPASLIPHIEIL 198
+ VD +G V+ S L + L
Sbjct: 89 TDGSVWANFGVTQQPAYAFVDPHGN-VDVVRGRMSQDELTRRVTAL 133
>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2,
NYSGXRC, structu genomics, protein structure initiative;
1.76A {Thermus thermophilus}
Length = 154
Score = 36.9 bits (86), Expect = 0.002
Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 32/142 (22%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAFP 105
DF + + KG+ V +T + + AS C E L + G+
Sbjct: 13 DFLLLDPKGQPVTPATVSKPAV--IVFWASWCTVC---KAEFPGLHRVAEETGVPFYV-- 65
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
+ + + E+ K PL + + A ++
Sbjct: 66 ---ISREPRDTREVVLEYMKTYPRFI--------------PLLASDRDRPHEV---AARF 105
Query: 166 NF----TKFIVDKNGVPVERHA 183
F+VD+ G V A
Sbjct: 106 KVLGQPWTFVVDREGKVVALFA 127
>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1,
thiol-disulfide oxidoreduct TLPA-like family, PSI-2;
1.74A {Bacteroides thetaiotaomicron}
Length = 150
Score = 35.8 bits (83), Expect = 0.003
Identities = 22/142 (15%), Positives = 55/142 (38%), Gaps = 27/142 (19%)
Query: 47 DFTVKNIKGEDVPLS--TYKGHVLVIVNV-ASRCG--YTGKHYKELVELDEKFR-DRGLR 100
F++ N KGE + S +K +++N AS + EL E+ +K++ ++ +
Sbjct: 13 FFSLPNAKGEKITRSSDAFKQKS-LLINFWASWNDSISQKQSNSELREIYKKYKKNKYIG 71
Query: 101 ILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLV 160
+L + D Q + K+ + ++ + G N+ ++
Sbjct: 72 MLGISLDV-------DKQQWKDAIKRDTLDWEQV--CDFGGLNSEVAKQY---------- 112
Query: 161 DAIKWNFTKFIVDKNGVPVERH 182
+I ++ +G + ++
Sbjct: 113 -SIYKIPANILLSSDGKILAKN 133
>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein,
structural genomics, riken struc genomics/proteomics
initiative, RSGI; 1.80A {Thermus thermophilus} SCOP:
c.47.1.10 PDB: 2ywo_A
Length = 188
Score = 36.2 bits (84), Expect = 0.004
Identities = 21/87 (24%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHY-KELVELDEKFRDRGLRILAFP 105
D + + +G LS + +L +V + + C Y K ELV L E++R + +
Sbjct: 15 DAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYV-KGSIGELVALAERYRG-KVAFVGIN 72
Query: 106 CNQFGGQEPGDA-DQICEFTKKKNVQF 131
N + + P DA +++ F ++ + F
Sbjct: 73 ANDY-EKYPEDAPEKMAAFAEEHGIFF 98
>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation,
disulfide bonds tryparedoxin, thioredoxin, trypanosome;
1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A
1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A
Length = 146
Score = 34.7 bits (80), Expect = 0.008
Identities = 10/59 (16%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKF-RDRGLRILA 103
+V + + G + V AS C +L+E +KF + ++
Sbjct: 10 GIEKLRRGDGEVEVKSLAGKL-VFFYFSASWCPPARGFTPQLIEFYDKFHESKNFEVVF 67
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.027
Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 63/185 (34%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLV-----------------IVNVASRCGYTGKHYKELVE 89
+F ++G D+ H L I N + + + +
Sbjct: 90 EFENCYLEGNDI-------HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSN 142
Query: 90 --LDEKFRDRGLRILAFPCNQFGGQEPGDA----DQICEF--TKKKNVQFDLFEKINVNG 141
L + +++A FGGQ G+ +++ + T V DL +
Sbjct: 143 SALFRAVGEGNAQLVA----IFGGQ--GNTDDYFEELRDLYQTYHVLVG-DLIKFS---- 191
Query: 142 DNAHPLWKFLK--------HKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIP 193
A L + ++ QG ++ ++W + + + P + + + P S P
Sbjct: 192 --AETLSELIRTTLDAEKVFTQG---LNILEW-----LENPSNTPDKDYLLSI-PISC-P 239
Query: 194 HIEIL 198
I ++
Sbjct: 240 LIGVI 244
Score = 34.3 bits (78), Expect = 0.040
Identities = 41/245 (16%), Positives = 74/245 (30%), Gaps = 82/245 (33%)
Query: 29 YDFTSMADDSWKNAE----TVYDFTVKNI-----KGEDVPLSTYKGHVLVIVNVASRCGY 79
Y + A D W A+ Y F++ +I + KG + R Y
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI-------RENY 1688
Query: 80 TGKHYKELVELDEK----FRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQ----- 130
+ ++ +V+ K F++ ++ F ++ G +FT Q
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYT---FRSEK-GLLSAT-QFT-----QPALTL 1738
Query: 131 -----F-DLFEKINVNGDNA---HPLWKFLKHKQGG------------TLVDAIKWNFTK 169
F DL K + D H L G ++ ++
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSL---------GEYAALASLADVMSIESLVE----- 1784
Query: 170 FIVDKNG----VPVERHAANASPASLI---PH-IEILGRTSAIKWNFTKFIVDKNGAPVE 221
+V G V V R S +I P + A+++ + + + G VE
Sbjct: 1785 -VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQY-VVERVGKRTGWLVE 1842
Query: 222 RHAAN 226
N
Sbjct: 1843 --IVN 1845
Score = 31.6 bits (71), Expect = 0.30
Identities = 34/217 (15%), Positives = 57/217 (26%), Gaps = 84/217 (38%)
Query: 37 DSWKNAETVYD-FT------VKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVE 89
S+ A + + F + +D P + E
Sbjct: 25 ASFFIASQLQEQFNKILPEPTEGFAADDEPTTP-------------------------AE 59
Query: 90 LDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWK 149
L KF L + + EP Q + + FE + G++ H L
Sbjct: 60 LVGKF-------LGYVSSLV---EPSKVGQFDQVLN---LCLTEFENCYLEGNDIHALAA 106
Query: 150 FLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFT 209
L + TLV TK ++ ++ A + P + SA+ F
Sbjct: 107 KLLQENDTTLVK------TKELI--------KNYITARIMAKRPFDK--KSNSAL---FR 147
Query: 210 KFIVDKNGAPVERHAANASPASLIP------NIEKYL 240
A A L+ N + Y
Sbjct: 148 --------------AVGEGNAQLVAIFGGQGNTDDYF 170
Score = 28.5 bits (63), Expect = 2.3
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 10/53 (18%)
Query: 188 PASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPASLIPNIEKYL 240
P + L + F K + P E AA+ P + + K+L
Sbjct: 23 PTASFFIASQL------QEQFNKIL----PEPTEGFAADDEPTTPAELVGKFL 65
>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius
rotundicauda}
Length = 143
Score = 32.0 bits (73), Expect = 0.062
Identities = 18/154 (11%), Positives = 33/154 (21%), Gaps = 50/154 (32%)
Query: 47 DFTVKNIKGEDVPLSTY-KGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRGLRILAF 104
+ +V + K ++ A C
Sbjct: 6 GIKLVKKNRCEVNANEALKDKDIIGFYFSAHWCP-------------------------- 39
Query: 105 PCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGT---LVD 161
PC F P + + + FE I V+ D + + G +
Sbjct: 40 PCRGF---TP----ILADMYSELVDDSAPFEIIFVSSDRSEDDMFQYMMESHGDWLAIPY 92
Query: 162 AIKWNF------------TKFIVDKNGVPVERHA 183
IV K+G + +
Sbjct: 93 RSGPASNVTAKYGITGIPALVIVKKDGTLISMNG 126
>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized
cystein sulfenic acid, structural genomics, PSI; 1.90A
{Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB:
1xxu_A
Length = 160
Score = 31.8 bits (73), Expect = 0.094
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIV 71
DFT+++ + V L Y+G V++
Sbjct: 17 DFTLRDQNQQLVTLRGYRGAKNVLL 41
>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET:
PG4; 1.96A {Staphylococcus aureus}
Length = 166
Score = 31.8 bits (73), Expect = 0.097
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIV 71
DFTV + V L+ Y G +I
Sbjct: 28 DFTVLDNDLNQVTLADYAGKKKLIS 52
>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI,
structure initiative, NEW YORK SGX research center for
STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP:
c.47.1.10
Length = 163
Score = 31.1 bits (71), Expect = 0.15
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIV 71
DF++ L+ + G V+
Sbjct: 24 DFSLTTTDLSKKSLADFDGKKKVLS 48
>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin,
thioredoxin-fold, ROS PR; 1.74A {Yersinia
pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A
4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A
Length = 200
Score = 31.2 bits (71), Expect = 0.18
Identities = 10/29 (34%), Positives = 14/29 (48%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVAS 75
DFT+ DV LS++ G V+ S
Sbjct: 60 DFTLVAKDLSDVALSSFAGKRKVLNIFPS 88
>2yzh_A Probable thiol peroxidase; redox protein, antioxidant,
oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex
aeolicus}
Length = 171
Score = 31.1 bits (71), Expect = 0.18
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVI 70
+ V ++ + K V VI
Sbjct: 29 EAVVVTKDLQEKIVGGAKDVVQVI 52
>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein
structure initiative; 1.90A {Haemophilus influenzae}
SCOP: c.47.1.10
Length = 165
Score = 31.1 bits (71), Expect = 0.19
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVAS 75
+F + DV L+ + V+ S
Sbjct: 25 NFILVGNDLADVALNDFASKRKVLNIFPS 53
>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI,
protein structur initiative, TB structural genomics
consortium, TBSGC; 1.75A {Mycobacterium tuberculosis}
SCOP: c.47.1.10 PDB: 1y25_A
Length = 175
Score = 31.1 bits (71), Expect = 0.21
Identities = 3/24 (12%), Positives = 10/24 (41%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVI 70
FT+ + ++G +++
Sbjct: 26 AFTLTGGDLGVISSDQFRGKSVLL 49
>2jsy_A Probable thiol peroxidase; solution structure, antioxidant,
oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A
Length = 167
Score = 30.7 bits (70), Expect = 0.21
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVAS 75
DFTV E+ L+ KG V +I + S
Sbjct: 26 DFTVLTNSLEEKSLADMKGKVTIISVIPS 54
>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2,
Pro structure initiative; HET: MSE; 1.80A
{Chromobacterium violaceum}
Length = 224
Score = 31.0 bits (70), Expect = 0.25
Identities = 6/29 (20%), Positives = 13/29 (44%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVAS 75
F + + + D L ++ +IV + S
Sbjct: 30 SFMLVDDQKHDAALESFSHTPKLIVTLLS 58
>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron
transport; 1.80A {Leishmania major}
Length = 165
Score = 30.6 bits (69), Expect = 0.27
Identities = 11/53 (20%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRG 98
+ + + + + G V AS C +LVE EK D
Sbjct: 30 EALKLRKQADTADMDSLSGKT-VFFYFSASWCPPCRGFTPQLVEFYEKHHDSK 81
>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump,
ATP-binding, hydrogen ION transport, hydrolase, ION
transport; HET: ACP; 3.60A {Arabidopsis thaliana}
Length = 885
Score = 31.1 bits (71), Expect = 0.34
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 49 TVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAF 104
T + G KG I+ + K+++ + +K+ +RGLR LA
Sbjct: 410 TYIDGSGN--WHRVSKGAPEQIL---ELAKASNDLSKKVLSIIDKYAERGLRSLAV 460
>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia
fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A
1oc9_B 1fg4_A 1oc9_A
Length = 144
Score = 29.3 bits (66), Expect = 0.55
Identities = 9/55 (16%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 47 DFTVKNIK--GEDVPLSTYKGHVLVIVNV-ASRCGYTGKHYKELVELDEKFRDRG 98
++ +K D+ L + G V AS C + +L++ + ++
Sbjct: 8 PYSTNVLKGAAADIALPSLAGKT-VFFYFSASWCPPSRAFTPQLIDFYKAHAEKK 61
>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; 1.60A {Sulfolobus tokodaii} PDB:
3hjp_A
Length = 157
Score = 29.5 bits (67), Expect = 0.61
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVI 70
DF + + + + V LS KG V+V+
Sbjct: 12 DFELPDTELKKVKLSALKGKVVVL 35
>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys,
oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV}
PDB: 3gkk_A 3gkm_A
Length = 163
Score = 29.2 bits (66), Expect = 0.79
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 33 SMADDSWKNAETVYDFTVKNIKGEDVPLSTYKGHVLVI 70
+M D + +D + G L + GH LVI
Sbjct: 3 AMTDAVLELPAATFDLPLSLSGGTQTTLRAHAGHWLVI 40
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.80
Identities = 43/326 (13%), Positives = 86/326 (26%), Gaps = 113/326 (34%)
Query: 2 AQSENNNTFFRSHYSMA----DDSWKNAETVYDF------------TSMADDSWKNAETV 45
Q+E Y + NA+ F + D +A T
Sbjct: 230 IQAELRRLLKSKPYENCLLVLLNVQ-NAKAWNAFNLSCKILLTTRFKQVTDFL--SAATT 286
Query: 46 YDFTVK-------------------NIKGEDVPLSTYKGHVLVIVNVA-------SRCGY 79
++ + + +D+P + + +A +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 80 TGKHY-----KELVE-----LDEK-FRDRGLRILA-FP----------CNQFGGQEPGDA 117
KH ++E L+ +R L+ FP + D
Sbjct: 347 W-KHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 118 DQI-CEFTKK-------KNVQF---DLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWN 166
+ + K K ++ ++ V +N + L H+ +VD +N
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-----HRS---IVD--HYN 454
Query: 167 FTK-FIVDKNGVPVE---------RHAANASPA---SLIPHIEILGRTSAIKWNFTKFIV 213
K F D P H N +L + + +F +F+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL---------DF-RFLE 504
Query: 214 DKNGAPVERHAANASPASLIPNIEKY 239
K A+ S + + ++ Y
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKFY 530
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 28.7 bits (63), Expect = 1.9
Identities = 13/86 (15%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 90 LDEKFRDRGLRILAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEK-----INVNGDNA 144
D K G + C + G+ + Q+ FT +++++ + + +
Sbjct: 439 ADTKHGALGSPLRLEGCVRGRGEAAWNNMQVFTFTWREDIRPGDPQHTKKFCFDAISHTS 498
Query: 145 HP-LWKFLKHKQGGTLVDAIKWNFTK 169
L+ H G W + K
Sbjct: 499 PVTLYD--CHSMKGN----QLWKYRK 518
>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
protein, P-type ATPase, active transport, cryo-electron
microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
Length = 920
Score = 28.1 bits (63), Expect = 3.2
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)
Query: 49 TVKNIKGEDVPLSTYKGHVLVIVNVASRC-GYTGKHYKELVELDEKFRDRGLRILAF 104
V++ +GE ++ KG L ++ + + +F RG R L
Sbjct: 461 VVESPQGE--RITCVKGAPLFVLKTVEEDHPIPEEVDQAYKNKVAEFATRGFRSLGV 515
>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog;
bacterioferritin comigratory protein, oxidore; HET:
CIT; 2.15A {Sulfolobus solfataricus}
Length = 161
Score = 26.4 bits (59), Expect = 6.3
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIV 71
F GE + LS Y G +++
Sbjct: 10 LFEGIADNGEKISLSDYIGKHNIVL 34
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; 1.85A {Thermobifida fusca} PDB:
3f7w_A
Length = 288
Score = 26.6 bits (58), Expect = 8.5
Identities = 10/45 (22%), Positives = 12/45 (26%), Gaps = 4/45 (8%)
Query: 82 KHYKELVELDEKFRDRG----LRILAFPCNQFGGQEPGDADQICE 122
Y E+ L E +R R L L FG
Sbjct: 239 DAYNEVAPLAEGWRARIPLHQLHPLLVHVCLFGAAYRTTLVDTAR 283
>3ixr_A Bacterioferritin comigratory protein; alpha beta protein,
oxidoreductase; 1.60A {Xylella fastidiosa}
Length = 179
Score = 26.1 bits (58), Expect = 9.7
Identities = 5/24 (20%), Positives = 8/24 (33%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVI 70
+ + LS Y LV+
Sbjct: 33 NHPLMLSGSTCKTLSDYTNQWLVL 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.411
Gapped
Lambda K H
0.267 0.0689 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,740,467
Number of extensions: 220019
Number of successful extensions: 819
Number of sequences better than 10.0: 1
Number of HSP's gapped: 762
Number of HSP's successfully gapped: 111
Length of query: 240
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 149
Effective length of database: 4,160,982
Effective search space: 619986318
Effective search space used: 619986318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)