RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy299
(240 letters)
>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 184
Score = 128 bits (323), Expect = 7e-38
Identities = 65/205 (31%), Positives = 94/205 (45%), Gaps = 29/205 (14%)
Query: 43 ETVYDFTVKNIK-GEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRI 101
++VY F+ + + GE V L + +G VL+I NVAS G T + Y ++ EL + RGL +
Sbjct: 1 QSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLGGTTVRDYTQMNELQRRLGPRGLVV 60
Query: 102 LAFPCNQFGGQEPGDADQICEFTKKK------NVQFDLFEKINVNGDNAHPLWKFLKHKQ 155
L FPCNQFG QE ++I K F LFEK VNG AHPL+ FL+
Sbjct: 61 LGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLREAL 120
Query: 156 GGTLVDAIKWNFTKFIVDKNGVPVERHAANASPASLIPHIEILGRTSAIKWNFTKFIVDK 215
DA ++ + V + + WNF KF+V
Sbjct: 121 PAPSDDATALMTDPKLITWSPV----------------------CRNDVAWNFEKFLVGP 158
Query: 216 NGAPVERHAANASPASLIPNIEKYL 240
+G P+ R++ + P+IE L
Sbjct: 159 DGVPLRRYSRRFQTIDIEPDIEALL 183
>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ),
soluble domain {Baker's yeast(Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 169
Score = 49.0 bits (115), Expect = 5e-08
Identities = 15/152 (9%), Positives = 37/152 (24%), Gaps = 3/152 (1%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEK---FRDRGLRILA 103
F ++++ G + G +I S C + + L +
Sbjct: 8 PFHLEDMYGNEFTEKNLLGKFSIIYFGFSNCPDICPDELDKLGLWLNTLSSKYGITLQPL 67
Query: 104 FPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAI 163
F P + + N + ++ +
Sbjct: 68 FITCDPARDSPAVLKEYLSDFHPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLV 127
Query: 164 KWNFTKFIVDKNGVPVERHAANASPASLIPHI 195
+ +++D G V+ N + + I
Sbjct: 128 DHSIFFYLMDPEGQFVDALGRNYDEKTGVDKI 159
>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase
MsrA/MsrB, N-terminal domain {Neisseria meningitidis
serogroup A [TaxId: 65699]}
Length = 143
Score = 48.4 bits (114), Expect = 6e-08
Identities = 17/150 (11%), Positives = 38/150 (25%), Gaps = 17/150 (11%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106
T+K + K +I AS C + + + + ++
Sbjct: 5 LSTLKTADNRPASVYLKKDKPTLIKFWASWCPLCLSELGQTEKWAQDAKFSSANLITVAS 64
Query: 107 NQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWN 166
F ++ D + L + G A L +
Sbjct: 65 PGFLHEKK---DGDFQKWYAGLNYPKLPVVTDNGGTIAQSLN-----------ISVYP-- 108
Query: 167 FTKFIVDKNGVPVERHAANASPASLIPHIE 196
+ ++ K+G + + A + I
Sbjct: 109 -SWALIGKDGDVQRIVKGSINEAQALALIR 137
>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ),
soluble domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 160
Score = 46.6 bits (109), Expect = 3e-07
Identities = 17/155 (10%), Positives = 45/155 (29%), Gaps = 3/155 (1%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTG-KHYKELVELDEKFRDRGLRILAFP 105
F++ GE Y G L+I + C + ++++++ ++ P
Sbjct: 2 PFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTP 61
Query: 106 CNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKW 165
E + I + K+ + + D ++ +
Sbjct: 62 LFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIV 121
Query: 166 NFTKFI--VDKNGVPVERHAANASPASLIPHIEIL 198
+ T + + +G ++ N + I
Sbjct: 122 DHTIIMYLIGPDGEFLDYFGQNKRKGEIAASIATH 156
>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein
TlpA, soluble domain {Bradyrhizobium japonicum [TaxId:
375]}
Length = 176
Score = 41.6 bits (96), Expect = 2e-05
Identities = 20/154 (12%), Positives = 40/154 (25%), Gaps = 23/154 (14%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106
D ++ G+ LS ++G L++ A+ C K
Sbjct: 38 DLAFEDADGKPKKLSDFRGKTLLVNLWATWCVPCRKEMPA-------------------L 78
Query: 107 NQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWN 166
++ G+ G ++ + + K K L +
Sbjct: 79 DELQGKLSGPNFEVVAINIDTRDPEKPKTFLKEANLTRLGYFNDQKAKVFQDLKAIGRAL 138
Query: 167 F--TKFIVDKNGVPVERH--AANASPASLIPHIE 196
T +VD G + A + + I
Sbjct: 139 GMPTSVLVDPQGCEIATIAGPAEWASEDALKLIR 172
>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide
isomerase/thioredoxin TTHA0593 {Thermus thermophilus
[TaxId: 274]}
Length = 187
Score = 40.7 bits (94), Expect = 5e-05
Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 17/147 (11%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106
D + + +G LS + +L +V + + C Y ELV L E++R + +
Sbjct: 14 DAELPDPRGGRYRLSQFHEPLLAVVFMCNHCPYVKGSIGELVALAERYRGKVAFVGINAN 73
Query: 107 NQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWN 166
+ E +++ F ++ + F A+ + +
Sbjct: 74 DYEKYPED-APEKMAAFAEEHGIFFPYLLDETQEVAKAYRALRTPEV------------- 119
Query: 167 FTKFIVDKNGVPVERHAANASPASLIP 193
F+ D+ + N +P
Sbjct: 120 ---FLFDERRLLRYHGRVNDNPKDPSK 143
>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 134
Score = 37.7 bits (86), Expect = 2e-04
Identities = 22/152 (14%), Positives = 40/152 (26%), Gaps = 25/152 (16%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106
F+ K + G D + G V+ A C + ++ + +A
Sbjct: 7 QFSAKTLDGHDFHGESLLGKPAVLWFWAPWCPTCQGEAPVVGQVAASHPEVTFVGVAGLD 66
Query: 107 NQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWN 166
QE + + FT+ + ++ V P
Sbjct: 67 QVPAMQEFVNKYPVKTFTQLADTDGSVWANFGVTQ---QP-------------------- 103
Query: 167 FTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
VD +G V+ S L + L
Sbjct: 104 -AYAFVDPHGN-VDVVRGRMSQDELTRRVTAL 133
>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 134
Score = 36.1 bits (82), Expect = 0.001
Identities = 17/159 (10%), Positives = 32/159 (20%), Gaps = 27/159 (16%)
Query: 42 AETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRI 101
A+ FT + G ++ +G V+ C + L ++
Sbjct: 1 ADERLQFTATTLSGAPFDGASLQGKPAVLWFWTPWCPFCNAEAPSLSQV----------- 49
Query: 102 LAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVD 161
+ ++ D +W V
Sbjct: 50 ----AAANPAVTFVGIATRADVGAMQSFVSKYNLNFTNLNDADGVIWARYN-------VP 98
Query: 162 AIKWNFTKFIVDKNG--VPVERHAANASPASLIPHIEIL 198
+G V A S L + L
Sbjct: 99 WQP---AFVFYRADGTSTFVNNPTAAMSQDELSGRVAAL 134
>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ),
soluble domain {Bacillus subtilis [TaxId: 1423]}
Length = 172
Score = 33.0 bits (74), Expect = 0.015
Identities = 26/161 (16%), Positives = 56/161 (34%), Gaps = 6/161 (3%)
Query: 45 VYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAF 104
V FT +N G++V L + KG V + + + C T D + + + I
Sbjct: 11 VEPFTFQNQDGKNVSLESLKGEVWLADFIFTNC-ETICPPMTAHMTDLQKKLKAENIDVR 69
Query: 105 PCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHP---LWKFLKHKQGGTLVD 161
+ E Q+ +F + FD ++ + + L F + D
Sbjct: 70 IISFSVDPENDKPKQLKKFAANYPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGED 129
Query: 162 AIKWNFTKFIVDKNGVPVERH--AANASPASLIPHIEILGR 200
+ + ++V +G ++ + N +I ++
Sbjct: 130 QVIHQSSFYLVGPDGKVLKDYNGVENTPYDDIISDVKSAST 170
>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV
{Bacillus subtilis [TaxId: 1423]}
Length = 143
Score = 31.8 bits (71), Expect = 0.027
Identities = 17/152 (11%), Positives = 40/152 (26%), Gaps = 21/152 (13%)
Query: 47 DFTVKN--IKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAF 104
+ T + + GE +I + C + ++ E +K+
Sbjct: 9 ELTGEKAWLNGEVTREQLIGEKPTLIHFWSISCHLCKEAMPQVNEFRDKY---------Q 59
Query: 105 PCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIK 164
++ + K K + + D+ H L + +
Sbjct: 60 DQLNVVAVHMPRSEDDLDPGKIKETAAEHDITQPIFVDSDHALTDAFE----------NE 109
Query: 165 WNFTKFIVDKNGVPVERHAANASPASLIPHIE 196
+ ++ DK G A + L +
Sbjct: 110 YVPAYYVFDKTGQLRHFQAGGSGMKMLEKRVN 141
Score = 25.7 bits (55), Expect = 3.8
Identities = 5/30 (16%), Positives = 10/30 (33%)
Query: 209 TKFIVDKNGAPVERHAANASPASLIPNIEK 238
++ DK G A + L + +
Sbjct: 113 AYYVFDKTGQLRHFQAGGSGMKMLEKRVNR 142
>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata
[TaxId: 5656]}
Length = 144
Score = 31.3 bits (70), Expect = 0.041
Identities = 9/52 (17%), Positives = 19/52 (36%)
Query: 46 YDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDR 97
Y V D+ L + G + AS C + +L++ + ++
Sbjct: 9 YSTNVLKGAAADIALPSLAGKTVFFYFSASWCPPSRAFTPQLIDFYKAHAEK 60
>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata
[TaxId: 5656]}
Length = 144
Score = 31.2 bits (69), Expect = 0.052
Identities = 14/121 (11%), Positives = 34/121 (28%)
Query: 42 AETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRI 101
+ + +V + + G ++ AS C +L+E +KF +
Sbjct: 3 DKYLPGIEKLRRGDGEVEVKSLAGKLVFFYFSASWCPPARGFTPQLIEFYDKFHESKNFE 62
Query: 102 LAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVD 161
+ F + Q + +K++ + + G +V
Sbjct: 63 VVFCTWDEEEDGFAGYFAKMPWLAVPFAQSEAVQKLSKHFNVESIPTLIGVDADSGDVVT 122
Query: 162 A 162
Sbjct: 123 T 123
>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA
{Bacillus subtilis [TaxId: 1423]}
Length = 137
Score = 29.8 bits (65), Expect = 0.16
Identities = 15/152 (9%), Positives = 43/152 (28%), Gaps = 23/152 (15%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106
+F +++ G+ + LS KG + + + C K + P
Sbjct: 7 NFVLEDTNGKRIELSDLKGKGVFLNFWGTWCEPCKKEF--------------------PY 46
Query: 107 NQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWN 166
+ + + + G N + + +
Sbjct: 47 MANQYKHFKSQGVEIVAVNVGESKIAVHNFMKSYGVNFPVVLDTDRQVLDA---YDVSPL 103
Query: 167 FTKFIVDKNGVPVERHAANASPASLIPHIEIL 198
T F+++ G V+ + + + ++ ++
Sbjct: 104 PTTFLINPEGKVVKVVTGTMTESMIHDYMNLI 135
>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 28.7 bits (63), Expect = 0.43
Identities = 14/136 (10%), Positives = 33/136 (24%), Gaps = 16/136 (11%)
Query: 43 ETVYDFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTG-KHYKELVELDEKFRDRGLRI 101
FT+ DV L + G V+ S ++ +L + + +
Sbjct: 22 SKAQTFTLVAKDLSDVTLGQFAGKRKVLNIFPSIDTGVCAASVRKFNQLATEIDNTVVLC 81
Query: 102 LAFPCNQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVD 161
++ F + + + N + + L
Sbjct: 82 IS----------ADLPFAQSRFCGAEGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAA 131
Query: 162 AIKWNFTKFIVDKNGV 177
++D+N
Sbjct: 132 R-----AVVVIDENDN 142
>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 163
Score = 28.0 bits (61), Expect = 0.68
Identities = 13/150 (8%), Positives = 32/150 (21%), Gaps = 19/150 (12%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106
DF++ L+ + G V+ V S R +
Sbjct: 24 DFSLTTTDLSKKSLADFDGKKKVLSVVPSIDTGICSTQ---------TRRFNEELAGLDN 74
Query: 107 NQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWN 166
+ + + + + + +
Sbjct: 75 TVVLTVSMDLPFAQKRWCGAEGLDNAIMLSDYFDHSFGRDYALLINEWHL-----LARAV 129
Query: 167 FTKFIVDKNGVPVERHAANASPASLIPHIE 196
F++D + R+ + P+ E
Sbjct: 130 ---FVLDTDN--TIRYVEYVDNINSEPNFE 154
>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 153
Score = 27.4 bits (59), Expect = 0.93
Identities = 20/150 (13%), Positives = 38/150 (25%), Gaps = 14/150 (9%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHYKELVELDEKFRDRGLRILAFPC 106
DFT+++ + V L Y+G V++ + D
Sbjct: 10 DFTLRDQNQQLVTLRGYRGAKNVLLVFFPLAFTGICQGELDQLRDHLPEFE------NDD 63
Query: 107 NQFGGQEPGDADQICEFTKKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWN 166
+ G + + F L +G + F + A N
Sbjct: 64 SAALAISVGPPPTHKIWATQSGFTFPLLSDFWPHGAVSQAYGVFNE--------QAGIAN 115
Query: 167 FTKFIVDKNGVPVERHAANASPASLIPHIE 196
F+VD++G+
Sbjct: 116 RGTFVVDRSGIIRFAEMKQPGEVRDQRLWT 145
>d1c0aa2 d.74.4.1 (A:288-420) Prokaryotic AspRS, insert domain
{Escherichia coli [TaxId: 562]}
Length = 133
Score = 27.3 bits (60), Expect = 0.99
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 12/80 (15%)
Query: 86 ELVELDEKFRDRGLRILAFPCNQFGGQ-----EPGDA-------DQICEFTKKKNVQFDL 133
EL ++ + + + A P N G+ PG A D+ F K +
Sbjct: 4 ELTDVADLLKSVEFAVFAGPANDPKGRVAALRVPGGASLTRKQIDEYGNFVKIYGAKGLA 63
Query: 134 FEKINVNGDNAHPLWKFLKH 153
+ K+N + +
Sbjct: 64 YIKVNERAKGLEGINSPVAK 83
>d1oaoc_ e.26.1.3 (C:) Bifunctional carbon monoxide
dehydrogenase/acetyl-CoA synthase (CODH/ACS) alpha (ACS)
subunit {Moorella thermoacetica [TaxId: 1525]}
Length = 729
Score = 27.8 bits (62), Expect = 1.5
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 109 FGGQEPGDADQICEFTKKK 127
FGG PG ++ ++ +++
Sbjct: 229 FGGVTPGAREEQRDYQRRR 247
>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 88
Score = 25.6 bits (55), Expect = 2.5
Identities = 9/56 (16%), Positives = 14/56 (25%), Gaps = 2/56 (3%)
Query: 9 TFFRSHYSMADDSWKNAETVYDFTSMADDSWKNAETVYDFTVK--NIKGEDVPLST 62
+R Y N TV + Y+ + E P+S
Sbjct: 29 DSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEPISG 84
>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE)
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 144
Score = 25.9 bits (55), Expect = 3.0
Identities = 14/116 (12%), Positives = 28/116 (24%), Gaps = 5/116 (4%)
Query: 125 KKKNVQFDLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDKNGVPVERHAA 184
K K +++ V + PL L + N
Sbjct: 30 KGKVSLVNVWASWCVPCHDEAPLLTELGKDKRF-----QLVGINYKDAADNARRFLGRYG 84
Query: 185 NASPASLIPHIEILGRTSAIKWNFTKFIVDKNGAPVERHAANASPASLIPNIEKYL 240
N + + F+V + G V + +P +L + +
Sbjct: 85 NPFGRVGVDANGRASIEWGVYGVPETFVVGREGTIVYKLVGPITPDNLRSVLLPQM 140
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT
{Escherichia coli [TaxId: 562]}
Length = 214
Score = 26.0 bits (57), Expect = 3.5
Identities = 13/89 (14%), Positives = 23/89 (25%), Gaps = 1/89 (1%)
Query: 116 DADQICEFTKKKNVQF-DLFEKINVNGDNAHPLWKFLKHKQGGTLVDAIKWNFTKFIVDK 174
D + KK +F F I NAHP ++ + D++ +T F
Sbjct: 36 DITAFLKTVKKNKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQT 95
Query: 175 NGVPVERHAANASPASLIPHIEILGRTSA 203
+ +
Sbjct: 96 ETFSSLWSEYHDDFRQFLHIYSQDVACYG 124
>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 166
Score = 25.6 bits (55), Expect = 4.2
Identities = 4/38 (10%), Positives = 11/38 (28%)
Query: 47 DFTVKNIKGEDVPLSTYKGHVLVIVNVASRCGYTGKHY 84
FT+ + ++G +++ S
Sbjct: 25 AFTLTGGDLGVISSDQFRGKSVLLNIFPSVDTPVCATS 62
>d1qasa1 a.39.1.7 (A:205-298) Phosphoinositide-specific
phospholipase C, isozyme D1 (PLC-D!) {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 94
Score = 24.4 bits (53), Expect = 6.6
Identities = 7/36 (19%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 132 DLFEKINVNGD--NAHPLWKFLKHKQGGTLVDAIKW 165
FE+ + + + L FL+H+Q
Sbjct: 12 RAFEEAAGSAETLSVERLVTFLQHQQREEEAGPALA 47
>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId:
1167]}
Length = 108
Score = 24.4 bits (52), Expect = 6.8
Identities = 4/35 (11%), Positives = 11/35 (31%)
Query: 206 WNFTKFIVDKNGAPVERHAANASPASLIPNIEKYL 240
+ K ++ S L+ ++ +L
Sbjct: 73 EGVPALRLVKGEQILDSTEGVISKDKLLSFLDTHL 107
>d1jr2a_ c.113.1.1 (A:) Uroporphyrinogen III synthase (U3S, HemD)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 260
Score = 24.9 bits (53), Expect = 9.7
Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 186 ASPASLIPHIEILGRTSAIKWNFTKFIV---------DKNGAPVERHAANASPASLIPNI 236
SP+ L ++ + S + KF G PV A + +P +L I
Sbjct: 196 FSPSGLTYSLKHIQELSGDNIDQIKFAAIGPTTARALAAQGLPVSCTAESPTPQALATGI 255
Query: 237 EKYL 240
K L
Sbjct: 256 RKAL 259
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.411
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 927,033
Number of extensions: 43194
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 148
Number of HSP's successfully gapped: 39
Length of query: 240
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 157
Effective length of database: 1,268,006
Effective search space: 199076942
Effective search space used: 199076942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)