BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2990
(162 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor.
pdb|3NY8|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Inverse Agonist Ici 118,551
pdb|3NY9|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With A Novel Inverse Agonist
pdb|3NYA|A Chain A, Crystal Structure Of The Human Beta2 Adrenergic Receptor
In Complex With The Neutral Antagonist Alprenolol
Length = 490
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 17/82 (20%)
Query: 86 RHMRTPTNAVLMAMALSDMFTLLFPAPW-----LFYMYTFGNHYKPLSPVAACYAWNIMN 140
++T TN + ++A +D+ L P+ L M+TFGN + C W
Sbjct: 70 ERLQTVTNYFITSLACADLVMGLAVVPFGAAHILMKMWTFGNFW--------CEFWT--- 118
Query: 141 EVIPTLFHTASIWLTLALAVQR 162
I L TASIW +AV R
Sbjct: 119 -SIDVLCVTASIWTLCVIAVDR 139
>pdb|3OAX|A Chain A, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|3OAX|B Chain B, Crystal Structure Of Bovine Rhodopsin With Beta-Ionone
pdb|1GZM|A Chain A, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1GZM|B Chain B, Structure Of Bovine Rhodopsin In A Trigonal Crystal Form
pdb|1HZX|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1HZX|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|2I36|A Chain A, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|B Chain B, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I36|C Chain C, Crystal Structure Of Trigonal Crystal Form Of Ground-State
Rhodopsin
pdb|2I35|A Chain A, Crystal Structure Of Rhombohedral Crystal Form Of
Ground-State Rhodopsin
pdb|2I37|A Chain A, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|B Chain B, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2I37|C Chain C, Crystal Structure Of A Photoactivated Rhodopsin
pdb|2HPY|A Chain A, Crystallographic Model Of Lumirhodopsin
pdb|2HPY|B Chain B, Crystallographic Model Of Lumirhodopsin
pdb|2PED|A Chain A, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2PED|B Chain B, Crystallographic Model Of 9-Cis-Rhodopsin
pdb|2G87|A Chain A, Crystallographic Model Of Bathorhodopsin
pdb|2G87|B Chain B, Crystallographic Model Of Bathorhodopsin
pdb|1L9H|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1L9H|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms
Resolution
pdb|1U19|A Chain A, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
pdb|1U19|B Chain B, Crystal Structure Of Bovine Rhodopsin At 2.2 Angstroms
Resolution
Length = 349
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 86 RHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPT 145
+ +RTP N +L+ +A++D+F + + +YT + Y P + T
Sbjct: 67 KKLRTPLNYILLNLAVADLFMVF--GGFTTTLYTSLHGYFVFGPTGC-----NLEGFFAT 119
Query: 146 LFHTASIWLTLALAVQR 162
L ++W + LA++R
Sbjct: 120 LGGEIALWSLVVLAIER 136
>pdb|1JFP|A Chain A, Structure Of Bovine Rhodopsin (Dark Adapted)
pdb|1LN6|A Chain A, Structure Of Bovine Rhodopsin (Metarhodopsin Ii)
pdb|3CAP|A Chain A, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3CAP|B Chain B, Crystal Structure Of Native Opsin: The G Protein-Coupled
Receptor Rhodopsin In Its Ligand-Free State
pdb|3C9L|A Chain A, Structure Of Ground-State Bovine Rhodospin In A Hexagonal
Crystal Form
pdb|1F88|A Chain A, Crystal Structure Of Bovine Rhodopsin
pdb|1F88|B Chain B, Crystal Structure Of Bovine Rhodopsin
pdb|3DQB|A Chain A, Crystal Structure Of The Active G-protein-coupled Receptor
Opsin In Complex With A C-terminal Peptide Derived From
The Galpha Subunit Of Transducin
pdb|3PQR|A Chain A, Crystal Structure Of Metarhodopsin Ii In Complex With A
C-Terminal Peptide Derived From The Galpha Subunit Of
Transducin
pdb|3PXO|A Chain A, Crystal Structure Of Metarhodopsin Ii
Length = 348
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 86 RHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPT 145
+ +RTP N +L+ +A++D+F + + +YT + Y P + T
Sbjct: 66 KKLRTPLNYILLNLAVADLFMVF--GGFTTTLYTSLHGYFVFGPTGC-----NLEGFFAT 118
Query: 146 LFHTASIWLTLALAVQR 162
L ++W + LA++R
Sbjct: 119 LGGEIALWSLVVLAIER 135
>pdb|4A4M|A Chain A, Crystal Structure Of The Light-Activated Constitutively
Active N2c,M257y,D282c Rhodopsin Mutant In Complex With
A Peptide Resembling The C-Terminus Of The
Galpha-Protein Subunit (Gact)
Length = 349
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 86 RHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPT 145
+ +RTP N +L+ +A++D+F + + +YT + Y P + T
Sbjct: 67 KKLRTPLNYILLNLAVADLFMVF--GGFTTTLYTSLHGYFVFGPTGC-----NLEGFFAT 119
Query: 146 LFHTASIWLTLALAVQR 162
L ++W + LA++R
Sbjct: 120 LGGEIALWSLVVLAIER 136
>pdb|2J4Y|A Chain A, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
pdb|2J4Y|B Chain B, Crystal Structure Of A Rhodopsin Stabilizing Mutant
Expressed In Mammalian Cells
Length = 349
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 86 RHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPT 145
+ +RTP N +L+ +A++D+F + + +YT + Y P + T
Sbjct: 67 KKLRTPLNYILLNLAVADLFMVF--GGFTTTLYTSLHGYFVFGPTGC-----NLEGFFAT 119
Query: 146 LFHTASIWLTLALAVQR 162
L ++W + LA++R
Sbjct: 120 LGGEIALWSLVVLAIER 136
>pdb|3C9M|A Chain A, Structure Of A Mutant Bovine Rhodopsin In Hexagonal
Crystal Form
Length = 348
Score = 27.3 bits (59), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 86 RHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPT 145
+ +RTP N +L+ +A++D+F + + +YT + Y P + T
Sbjct: 66 KKLRTPLNYILLNLAVADLFMVF--GGFTTTLYTSLHGYFVFGPTGC-----NLEGFFAT 118
Query: 146 LFHTASIWLTLALAVQR 162
L ++W + LA++R
Sbjct: 119 LGGEIALWSLVVLAIER 135
>pdb|2X72|A Chain A, Crystal Structure Of The Constitutively Active E113q,N2c,
D282c Rhodopsin Mutant With Bound Galphact Peptide
Length = 349
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 7/77 (9%)
Query: 86 RHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPT 145
+ +RTP N +L+ +A++D+F + + +YT + Y P + T
Sbjct: 67 KKLRTPLNYILLNLAVADLFMVF--GGFTTTLYTSLHGYFVFGPTGC-----NLQGFFAT 119
Query: 146 LFHTASIWLTLALAVQR 162
L ++W + LA++R
Sbjct: 120 LGGEIALWSLVVLAIER 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,836,162
Number of Sequences: 62578
Number of extensions: 119889
Number of successful extensions: 176
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 176
Number of HSP's gapped (non-prelim): 7
length of query: 162
length of database: 14,973,337
effective HSP length: 91
effective length of query: 71
effective length of database: 9,278,739
effective search space: 658790469
effective search space used: 658790469
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)