Query psy2990
Match_columns 162
No_of_seqs 129 out of 1729
Neff 8.7
Searched_HMMs 46136
Date Fri Aug 16 22:41:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2990.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2990hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4219|consensus 99.8 7.5E-20 1.6E-24 145.6 8.9 100 56-162 33-133 (423)
2 PHA03234 DNA packaging protein 99.8 1.4E-18 3E-23 139.1 9.4 97 57-162 31-130 (338)
3 PHA02834 chemokine receptor-li 99.7 2.3E-16 5E-21 125.4 9.0 95 59-162 29-123 (323)
4 KOG4220|consensus 99.6 1.4E-16 3E-21 127.4 4.6 97 59-162 31-128 (503)
5 PHA02638 CC chemokine receptor 99.6 2E-15 4.4E-20 124.0 8.8 95 59-162 99-193 (417)
6 PHA03235 DNA packaging protein 99.6 1.1E-14 2.4E-19 119.4 9.9 96 57-162 31-130 (409)
7 PHA03087 G protein-coupled che 99.6 2.8E-14 6E-19 113.6 10.6 96 59-162 41-136 (335)
8 PF00001 7tm_1: 7 transmembran 99.3 1.3E-12 2.8E-17 98.1 5.3 81 75-162 1-82 (257)
9 KOG2087|consensus 98.9 1.8E-09 3.8E-14 85.7 4.0 99 59-162 25-129 (363)
10 PF10320 7TM_GPCR_Srsx: Serpen 98.8 2.1E-09 4.5E-14 83.1 3.2 84 70-162 2-86 (257)
11 PF10324 7TM_GPCR_Srw: Serpent 98.3 1.3E-06 2.9E-11 69.1 5.7 95 67-162 5-103 (318)
12 PF05296 TAS2R: Mammalian tast 97.4 0.0014 3E-08 52.0 9.0 94 60-160 8-105 (303)
13 PF05462 Dicty_CAR: Slime mold 97.3 0.00072 1.6E-08 53.6 6.4 91 60-161 8-99 (303)
14 PF11710 Git3: G protein-coupl 97.2 0.0024 5.2E-08 47.7 7.5 71 84-161 28-98 (201)
15 PF10328 7TM_GPCR_Srx: Serpent 97.1 0.0014 2.9E-08 51.0 5.8 88 68-162 3-92 (274)
16 PF03402 V1R: Vomeronasal orga 96.8 0.0029 6.4E-08 49.2 5.3 66 86-160 5-71 (265)
17 PF10321 7TM_GPCR_Srt: Serpent 96.2 0.026 5.7E-07 45.0 7.5 100 55-162 29-131 (313)
18 PF10317 7TM_GPCR_Srd: Serpent 89.8 0.57 1.2E-05 36.8 4.4 48 64-111 4-53 (292)
19 PF10316 7TM_GPCR_Srbc: Serpen 89.1 0.95 2.1E-05 35.5 5.1 96 62-162 9-106 (273)
20 PF00002 7tm_2: 7 transmembran 87.5 0.36 7.8E-06 36.5 1.8 89 65-161 7-96 (242)
21 PF10292 7TM_GPCR_Srab: Serpen 85.6 6.5 0.00014 31.3 8.1 97 62-162 20-121 (324)
22 PF10323 7TM_GPCR_Srv: Serpent 81.6 2.3 5E-05 33.3 4.0 41 71-111 7-52 (283)
23 PF02117 7TM_GPCR_Sra: Serpent 63.7 48 0.001 26.6 7.6 99 60-162 22-126 (328)
24 PF09882 DUF2109: Predicted me 54.0 18 0.00039 22.7 2.8 48 69-116 4-52 (78)
25 PF10327 7TM_GPCR_Sri: Serpent 46.2 70 0.0015 25.3 5.8 59 60-118 10-73 (303)
26 PF04789 DUF621: Protein of un 44.6 72 0.0016 25.4 5.4 65 90-162 47-115 (305)
27 PF02101 Ocular_alb: Ocular al 42.7 1.7E+02 0.0037 24.4 7.4 24 93-116 68-91 (405)
28 PF01102 Glycophorin_A: Glycop 33.1 22 0.00048 24.5 0.9 19 72-90 76-95 (122)
29 PF02118 Srg: Srg family chemo 31.5 1.1E+02 0.0023 23.3 4.7 90 69-162 8-106 (275)
30 PF06681 DUF1182: Protein of u 29.7 45 0.00098 25.3 2.1 30 129-162 113-142 (226)
31 KOG4193|consensus 28.1 1.7E+02 0.0037 25.9 5.7 61 86-160 348-409 (610)
32 PHA03164 hypothetical protein; 24.2 59 0.0013 20.4 1.6 25 85-109 52-76 (88)
33 PF11446 DUF2897: Protein of u 24.1 56 0.0012 19.1 1.4 14 67-80 10-23 (55)
No 1
>KOG4219|consensus
Probab=99.81 E-value=7.5e-20 Score=145.61 Aligned_cols=100 Identities=21% Similarity=0.348 Sum_probs=92.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchh
Q psy2990 56 YAQPMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACY 134 (162)
Q Consensus 56 ~~~~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~ 134 (162)
+.+.+++++|..+.+++++||++|+|| +.+|++|+.+|+|+.|||+||+..+++..|+...+...+ .|++ |...|+
T Consensus 33 ~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~~--~W~~-G~f~C~ 109 (423)
T KOG4219|consen 33 WQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALHQ--EWYF-GSFYCR 109 (423)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh--cccc-ccceee
Confidence 334588999999999999999999986 699999999999999999999999999999998877666 8866 999999
Q ss_pred hhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990 135 AWNIMNEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 135 ~~~~~~~~~~~~~~~~s~~~l~~isidR 162 (162)
+..|+. .....+|+++|+|||+||
T Consensus 110 f~nf~~----itav~vSVfTlvAiA~DR 133 (423)
T KOG4219|consen 110 FVNFFP----ITAVFVSVFTLVAIAIDR 133 (423)
T ss_pred eccccc----hhhhhHhHHHHHHHHHHH
Confidence 999988 999999999999999998
No 2
>PHA03234 DNA packaging protein UL33; Provisional
Probab=99.77 E-value=1.4e-18 Score=139.14 Aligned_cols=97 Identities=18% Similarity=0.145 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHHHHHhhhhheeh--h-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccch
Q psy2990 57 AQPMYGYVMPFLLLITIIANTLIVV--V-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAAC 133 (162)
Q Consensus 57 ~~~~~~~~~~~i~~~gi~gN~~vl~--v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C 133 (162)
.+....++|.+++++|++||++|++ + .+++++|+++|+|+.|||+||++.++ .+|...... .+ .|++ |+..|
T Consensus 31 ~~~~~~~~y~~vf~~gl~gN~lvl~v~~~~~~~~~rt~tn~fi~NLAvaDLL~~l-~lp~~~~~~-~~--~w~f-G~~lC 105 (338)
T PHA03234 31 AQILESAINGIMLTLIIPMIIIVICTLIIYHKVAKHNATSFYLITLFASDFLHML-CVFFLTLNR-EA--LFNF-NQAFC 105 (338)
T ss_pred HHHHhhHHHHHHHHHHhhhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH-HHHHHHHHH-hC--CccC-chhHH
Confidence 3457788999999999999999996 3 35567799999999999999999987 556555432 23 6855 99999
Q ss_pred hhhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990 134 YAWNIMNEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 134 ~~~~~~~~~~~~~~~~~s~~~l~~isidR 162 (162)
|+..++. ....++|+++|++||+||
T Consensus 106 k~~~~~~----~~~~~~Si~~L~~ISiDR 130 (338)
T PHA03234 106 QCVLFIY----HASCSYSICMLAIIATIR 130 (338)
T ss_pred HHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 9999998 999999999999999999
No 3
>PHA02834 chemokine receptor-like protein; Provisional
Probab=99.67 E-value=2.3e-16 Score=125.44 Aligned_cols=95 Identities=15% Similarity=0.232 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHHhhhhheehheecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhh
Q psy2990 59 PMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI 138 (162)
Q Consensus 59 ~~~~~~~~~i~~~gi~gN~~vl~v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~ 138 (162)
.+..+++.+++++|++||+++++++.+|+.++++|+|+.|||++|++. .+.+|+.+.. ..+ .|.+ |+..|++..+
T Consensus 29 ~~~~~~~~li~v~~~~gN~lVi~vi~~~~~~~~~n~~i~nLAiaDll~-~~~lP~~i~~-~~~--~w~~-g~~~C~~~~~ 103 (323)
T PHA02834 29 YFVIVFYILLFIFGLIGNVLVIAVLIVKRFMFVVDVYLFNIAMSDLML-VFSFPFIIHN-DLN--EWIF-GEFMCKLVLG 103 (323)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHhccccchhhhhhHHHHHHHHHH-HHHHHHHHHH-HcC--CcCC-cchHHHhHHH
Confidence 367789999999999999999876444445567899999999999986 5588987653 333 5755 9999999998
Q ss_pred HhhhhhhHHHHHHHHHHhhhhccC
Q psy2990 139 MNEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 139 ~~~~~~~~~~~~s~~~l~~isidR 162 (162)
+. ..+..+|++++++||+||
T Consensus 104 ~~----~~~~~~Si~tL~~IsidR 123 (323)
T PHA02834 104 VY----FVGFFSNMFFVTLISIDR 123 (323)
T ss_pred HH----HHHHHHHHHHHHHHHHHH
Confidence 87 788889999999999999
No 4
>KOG4220|consensus
Probab=99.64 E-value=1.4e-16 Score=127.43 Aligned_cols=97 Identities=24% Similarity=0.353 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhh
Q psy2990 59 PMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWN 137 (162)
Q Consensus 59 ~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~ 137 (162)
..+.++-..+.++.++||++|++- -.+|+|++..|+|+.+||+|||+.+.+.+|+...+...+ +|++ |...|.++-
T Consensus 31 v~i~~v~~~lsLVTv~GNlLVmiSfKvnrqLqTVnNYfLfSLAcADliIG~~SMnl~t~Y~lmg--~W~L-G~~~CdlWL 107 (503)
T KOG4220|consen 31 VFIVVVTGSLSLVTVVGNLLVMISFKVNRQLQTVNNYFLFSLACADLIIGAFSMNLYTTYTLMG--YWPL-GPLVCDLWL 107 (503)
T ss_pred EeeehhhhHHHHHhhhccEEEEEEEEecceeeeecceeehHHHHhhhhhheeechHHHHHHHHc--cccc-chHHHHHHH
Confidence 356678889999999999999964 578999999999999999999999999999999989999 9988 999999999
Q ss_pred hHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990 138 IMNEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 138 ~~~~~~~~~~~~~s~~~l~~isidR 162 (162)
.+. ++...+|++.|..||+||
T Consensus 108 alD----YvaSNASVmNLLiISFDR 128 (503)
T KOG4220|consen 108 ALD----YVASNASVMNLLIISFDR 128 (503)
T ss_pred HHH----HHhhhhhhhhhheeeeec
Confidence 999 999999999999999999
No 5
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=99.61 E-value=2e-15 Score=123.98 Aligned_cols=95 Identities=15% Similarity=0.307 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHHHHhhhhheehheecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhh
Q psy2990 59 PMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI 138 (162)
Q Consensus 59 ~~~~~~~~~i~~~gi~gN~~vl~v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~ 138 (162)
.....++.+++++|++||+++++++++|++|+++|+++.|||++|++.++ .+|+.+... .+ .|.+ |+..|++..+
T Consensus 99 ~~l~~~y~lvfvlgliGN~LVl~il~~k~lrt~t~i~llnLAisDLl~~l-~lPf~i~~~-~~--~W~f-g~~~Ck~~~~ 173 (417)
T PHA02638 99 EYIKIFYIIIFILGLFGNAAIIMILFCKKIKTITDIYIFNLAISDLIFVI-DFPFIIYNE-FD--QWIF-GDFMCKVISA 173 (417)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHhHHHHHHHHHHHHHHHH-HHHHHHHHH-hc--cccc-cccchhhHHH
Confidence 36677899999999999999997766788999999999999999999865 889877643 33 7755 9999999988
Q ss_pred HhhhhhhHHHHHHHHHHhhhhccC
Q psy2990 139 MNEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 139 ~~~~~~~~~~~~s~~~l~~isidR 162 (162)
+. ..+.++|++++++|++||
T Consensus 174 l~----~~~~~~Si~~L~~isiDR 193 (417)
T PHA02638 174 SY----YIGFFSNMFLITLMSIDR 193 (417)
T ss_pred HH----HHHHHHHHHHHHHHHHHH
Confidence 88 888999999999999999
No 6
>PHA03235 DNA packaging protein UL33; Provisional
Probab=99.58 E-value=1.1e-14 Score=119.36 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=76.2
Q ss_pred hhhHHHHHHHHHHHHHHhhhhheehh-ee-cCC-CCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCcccc-ccccc
Q psy2990 57 AQPMYGYVMPFLLLITIIANTLIVVV-LS-KRH-MRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPL-SPVAA 132 (162)
Q Consensus 57 ~~~~~~~~~~~i~~~gi~gN~~vl~v-~~-~~~-l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~-~~~~~ 132 (162)
...+..+++.+++++|++||++++++ ++ +|+ .++.+++|+.|||++|++.. +.+|+.+.. . .|.+ .|...
T Consensus 31 ~~~~~~~~~~li~vvGiigN~lVL~~~~~~~r~~~~~~~~~~I~NLAvsDLl~l-~~lP~~i~~---~--~~~~~~g~~~ 104 (409)
T PHA03235 31 ARTTETFINLLIISVGGPLNLIVLVTQLLANRVHGFSTPTLYMTNLYLANLLTV-FVLPFIMLS---N--QGLLSGSVAG 104 (409)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCccHHHHHHHHHHHHHHH-HHHHHHHHh---c--CccccCCCCe
Confidence 33578889999999999999999964 43 332 34567899999999999874 588877652 2 3433 25689
Q ss_pred hhhhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990 133 CYAWNIMNEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 133 C~~~~~~~~~~~~~~~~~s~~~l~~isidR 162 (162)
|++..++. ..++.+|+++|++||+||
T Consensus 105 Ck~~~~l~----~~~~~~Si~tL~~ISiDR 130 (409)
T PHA03235 105 CKFASLLY----YASCTVGFATVALIAADR 130 (409)
T ss_pred ehhHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 99999988 889999999999999999
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=99.56 E-value=2.8e-14 Score=113.63 Aligned_cols=96 Identities=20% Similarity=0.362 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHHHHhhhhheehheecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhh
Q psy2990 59 PMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI 138 (162)
Q Consensus 59 ~~~~~~~~~i~~~gi~gN~~vl~v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~ 138 (162)
.+...++.+++++|++||++++++..++++|++.|+++.|||++|++.++ ..|........+ .|.+ ++..|+...+
T Consensus 41 ~~~~~~~~~i~~~gl~gN~lvl~~~~~~~~~~~~~~ll~~laisDll~~~-~~~~~~~~~~~~--~~~~-~~~~C~~~~~ 116 (335)
T PHA03087 41 TILIVVYSTIFFFGLVGNIIVIYVLTKTKIKTPMDIYLLNLAVSDLLFVM-TLPFQIYYYILF--QWSF-GEFACKIVSG 116 (335)
T ss_pred hHHHHHHHHHHHHHHHhhHhEEeeehhccccCchHHHHHHHHHHHHHHHH-hHHHHHHHHhCC--CCCC-CcHHHHHHHH
Confidence 47778899999999999999997654449999999999999999998776 566665433333 6655 8899999999
Q ss_pred HhhhhhhHHHHHHHHHHhhhhccC
Q psy2990 139 MNEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 139 ~~~~~~~~~~~~s~~~l~~isidR 162 (162)
+. .....+|++++++||+||
T Consensus 117 ~~----~~~~~~S~~~l~~iaidR 136 (335)
T PHA03087 117 LY----YIGFYNSMNFITVMSVDR 136 (335)
T ss_pred HH----HHHHHHHHHHHHHHHHHH
Confidence 88 888899999999999998
No 8
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=99.34 E-value=1.3e-12 Score=98.07 Aligned_cols=81 Identities=25% Similarity=0.507 Sum_probs=70.1
Q ss_pred hhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhhHhhhhhhHHHHHHHH
Q psy2990 75 ANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIW 153 (162)
Q Consensus 75 gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~s~~ 153 (162)
||+++++ +.++|++|++.++++.|||++|++.++...|........+ .|.+ +...|++..++. .....+|.+
T Consensus 1 GN~lvi~~~~~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~~~--~~~~-~~~~C~~~~~~~----~~~~~~s~~ 73 (257)
T PF00001_consen 1 GNILVILVILRSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLLFD--DWIF-SSFLCRIFGFLF----YFSSFSSIF 73 (257)
T ss_dssp HHHHHHHHHHHSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHS--SCTS-HHHHHHHHHHHH----HHHHHHHHH
T ss_pred CchhehhhhhhhccCCChhHHHHHHHHHHHHhhccccccccccccccc--cccc-cccccccccccc----ccccccccc
Confidence 8999985 4688999999999999999999999998888777655443 6655 889999999888 899999999
Q ss_pred HHhhhhccC
Q psy2990 154 LTLALAVQR 162 (162)
Q Consensus 154 ~l~~isidR 162 (162)
+++++|+||
T Consensus 74 ~~~~is~dR 82 (257)
T PF00001_consen 74 SLVAISIDR 82 (257)
T ss_dssp HHHHHHHHH
T ss_pred ccccccccc
Confidence 999999998
No 9
>KOG2087|consensus
Probab=98.87 E-value=1.8e-09 Score=85.74 Aligned_cols=99 Identities=11% Similarity=0.151 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCC-----ccccccccc
Q psy2990 59 PMYGYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNH-----YKPLSPVAA 132 (162)
Q Consensus 59 ~~~~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~-----~~~~~~~~~ 132 (162)
.++.+...++.++++.||.+|++. ...|...++..++++|||.+|++.++...-...++....++ .||- ....
T Consensus 25 ~~lRi~vW~i~~lAi~gN~~Vl~~~~~~~~~~~~~~~li~~la~ad~~mGiYl~~ia~vD~~~~gey~~~ai~W~-tg~g 103 (363)
T KOG2087|consen 25 WILRISVWVIALLAIVGNLLVLLTRFTSRYELNSHRFLICNLAFADLLMGIYLGLIASVDAKTRGEYYKHAIDWQ-TGLG 103 (363)
T ss_pred ceeeehhhhhhhHHhccCeeeeeeeeehhhhccchHHHHHHHHHHHHHcchHHHHHHHhhHHHHHHHHHHHHhhh-hcCC
Confidence 355556779999999999999965 55566667999999999999999988655555443332221 2323 6779
Q ss_pred hhhhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990 133 CYAWNIMNEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 133 C~~~~~~~~~~~~~~~~~s~~~l~~isidR 162 (162)
|+..+|+. .+..-.|++.|+.+++||
T Consensus 104 C~~aGfla----vFASElSv~~LT~itlEr 129 (363)
T KOG2087|consen 104 CPVAGFLA----VFASELSVFLLTLITLER 129 (363)
T ss_pred CchHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 99999998 999999999999999998
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=98.83 E-value=2.1e-09 Score=83.15 Aligned_cols=84 Identities=21% Similarity=0.545 Sum_probs=69.1
Q ss_pred HHHHhhhhhee-hheecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhhHhhhhhhHHH
Q psy2990 70 LITIIANTLIV-VVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFH 148 (162)
Q Consensus 70 ~~gi~gN~~vl-~v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~ 148 (162)
++|++||..++ +++++|++|+|.+++++.+|++|++.+...+|..... .++..+ ....|-.+.+.. .++.
T Consensus 2 ~ig~~gN~~~i~~~~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~--~~~~~i---~~~~Cf~~~~~~----~f~~ 72 (257)
T PF10320_consen 2 IIGLFGNLLLIILIFRNKSLRSPCYILICILCFADLICLLGTLPFMLFL--FRDHQI---TRSECFWQIFFY----IFFQ 72 (257)
T ss_pred EEEEEccHHHHHHHHhccccccchHHHHHHHHHHHHHHHhhHHHHHHHH--Hhheec---cHHHHHHHHHHH----HHHH
Confidence 56899999888 5689999999999999999999999999888876642 232233 667888877776 7788
Q ss_pred HHHHHHHhhhhccC
Q psy2990 149 TASIWLTLALAVQR 162 (162)
Q Consensus 149 ~~s~~~l~~isidR 162 (162)
.++...+.+|++||
T Consensus 73 ~~qs~~~l~i~iDr 86 (257)
T PF10320_consen 73 CAQSVIMLAIAIDR 86 (257)
T ss_pred HHHHHHHHHHHhhh
Confidence 88899999999998
No 11
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.29 E-value=1.3e-06 Score=69.11 Aligned_cols=95 Identities=22% Similarity=0.470 Sum_probs=69.2
Q ss_pred HHHHHHHhhhhheehheecCCCCC-hhHHHHHHHHHHHHHHHHhhhhHHHHHHHhc---CCccccccccchhhhhhHhhh
Q psy2990 67 FLLLITIIANTLIVVVLSKRHMRT-PTNAVLMAMALSDMFTLLFPAPWLFYMYTFG---NHYKPLSPVAACYAWNIMNEV 142 (162)
Q Consensus 67 ~i~~~gi~gN~~vl~v~~~~~l~~-~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~---~~~~~~~~~~~C~~~~~~~~~ 142 (162)
++.++|+++|.+.+.|+.+|.+|+ +.|.++..+|++|++..+...+......... +..++. ..........+..+
T Consensus 5 ~~~~~g~~~N~~h~~VLtrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~-~sy~~~~~~~~~~~ 83 (318)
T PF10324_consen 5 ILSIFGLFINIFHLIVLTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPP-YSYFWAYFKLIMES 83 (318)
T ss_pred EEeHHHHHHHHHHhhhcCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCc-ccHHHHHHHHHHHH
Confidence 456789999999999999999997 8999999999999999998888777544332 111211 11122222223344
Q ss_pred hhhHHHHHHHHHHhhhhccC
Q psy2990 143 IPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 143 ~~~~~~~~s~~~l~~isidR 162 (162)
+...+.-.|.|.-+++|+.|
T Consensus 84 l~~~~~~~S~WL~V~mA~iR 103 (318)
T PF10324_consen 84 LSDIFRRISIWLGVLMALIR 103 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999877
No 12
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=97.40 E-value=0.0014 Score=52.02 Aligned_cols=94 Identities=19% Similarity=0.309 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHHhhhhheehh----eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhh
Q psy2990 60 MYGYVMPFLLLITIIANTLIVVV----LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYA 135 (162)
Q Consensus 60 ~~~~~~~~i~~~gi~gN~~vl~v----~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~ 135 (162)
+..++....+++|++||+.++++ ++|++.-+|.+..+.+||+++++...+..-......... .. +..+..++.
T Consensus 8 i~~~i~~~~~~~Gi~~N~FI~~vn~~~w~k~~~l~~~d~IL~~La~sr~~l~~~~~~~~~~~~~~~--~~-~~~~~~~~~ 84 (303)
T PF05296_consen 8 IFLIILVVEFIIGILGNGFIVLVNCSDWVKSRKLSPSDQILTSLAISRILLQWVILLNSFLSFFFP--NI-YFSENVYKI 84 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--hh-hhhhhHHHH
Confidence 56678888999999999988744 244455579999999999999998776544444323222 11 225556777
Q ss_pred hhhHhhhhhhHHHHHHHHHHhhhhc
Q psy2990 136 WNIMNEVIPTLFHTASIWLTLALAV 160 (162)
Q Consensus 136 ~~~~~~~~~~~~~~~s~~~l~~isi 160 (162)
..++. .+....|.|.-+.+++
T Consensus 85 ~~~~~----~f~~~~s~W~tt~Lsv 105 (303)
T PF05296_consen 85 IDFLW----MFSNSSSLWFTTWLSV 105 (303)
T ss_pred HHHHH----HHHhHHHHHHHHHHHH
Confidence 66655 5556777777776653
No 13
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.31 E-value=0.00072 Score=53.64 Aligned_cols=91 Identities=13% Similarity=0.205 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhh
Q psy2990 60 MYGYVMPFLLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI 138 (162)
Q Consensus 60 ~~~~~~~~i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~ 138 (162)
...++..+..+++++|-++++. .++.|++|++.+-++.-++++|++........... .+.. .+...|+++++
T Consensus 8 ~~~~i~~~~s~lSllGclfiI~tf~~~k~~r~~~~rli~yl~~~~ll~~v~~~~~~~~----~~~~---~~s~lC~~Qaf 80 (303)
T PF05462_consen 8 TLYAIELVASVLSLLGCLFIIITFCLFKRLRKPINRLIFYLSIANLLTNVASMIMTLS----PSAG---ENSFLCQFQAF 80 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhc----ccCC---CCCcchhhHhH
Confidence 4444555667788899988875 46889999999999999999999977644322211 1111 15678999999
Q ss_pred HhhhhhhHHHHHHHHHHhhhhcc
Q psy2990 139 MNEVIPTLFHTASIWLTLALAVQ 161 (162)
Q Consensus 139 ~~~~~~~~~~~~s~~~l~~isid 161 (162)
+. ..+..++.+..++||++
T Consensus 81 li----q~f~~as~lWt~~iA~n 99 (303)
T PF05462_consen 81 LI----QFFMLASFLWTLCIAFN 99 (303)
T ss_pred HH----HHhhHHHHHHHHHHHHH
Confidence 98 88888888888888764
No 14
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=97.16 E-value=0.0024 Score=47.74 Aligned_cols=71 Identities=17% Similarity=0.123 Sum_probs=50.0
Q ss_pred ecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhhHhhhhhhHHHHHHHHHHhhhhcc
Q psy2990 84 SKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQ 161 (162)
Q Consensus 84 ~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~s~~~l~~isid 161 (162)
..+++|.-.+.++.||.++|++-++..+....... .++ .- ..+...|..++++. ...-.++-+...+||++
T Consensus 28 ~~~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~~l-~~~-~i-~~~s~~C~aqGf~~----q~g~~~sd~~ilaIAih 98 (201)
T PF11710_consen 28 ITYRRRSFRHQLILNLLLADFIQALAFLISPIRWL-ARG-GI-IAPSPFCQAQGFFL----QVGDEASDLWILAIAIH 98 (201)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcC-Ce-eCCCCchhhhHHHH----HHHHHHHHHHHHHHHHH
Confidence 33566677777999999999999886554344322 222 22 12678999999988 77778888888888764
No 15
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=97.08 E-value=0.0014 Score=51.01 Aligned_cols=88 Identities=16% Similarity=0.278 Sum_probs=59.1
Q ss_pred HHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccch-hhhhhHhhhhhh
Q psy2990 68 LLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAAC-YAWNIMNEVIPT 145 (162)
Q Consensus 68 i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C-~~~~~~~~~~~~ 145 (162)
+.++|++.|.++++ +.+.|++|++-+.+..+.|++|.+.+...+-........+ .++...... .+.++.. .
T Consensus 3 ~s~~G~~~N~~v~~~~~~~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~~P~~~~~---~~~~~~~~~s~~~g~~~----~ 75 (274)
T PF10328_consen 3 ISIIGIILNWLVFIIIFKLKSLRNSFGILCASQAIANIIICLIFLFWVVPMTLLD---ISFLPSSLNSIIFGFIG----M 75 (274)
T ss_pred eeHHHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---cccCchHHHHHHHHHHH----H
Confidence 45789999999885 5788999999999999999999998884432222211112 112122222 2223333 5
Q ss_pred HHHHHHHHHHhhhhccC
Q psy2990 146 LFHTASIWLTLALAVQR 162 (162)
Q Consensus 146 ~~~~~s~~~l~~isidR 162 (162)
.+-..+.++-.+||++|
T Consensus 76 ~~y~~~~~~~~liaiNR 92 (274)
T PF10328_consen 76 FCYFIGPLSHLLIAINR 92 (274)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66677889999999888
No 16
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=96.79 E-value=0.0029 Score=49.23 Aligned_cols=66 Identities=21% Similarity=0.243 Sum_probs=51.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHh-hhhHHHHHHHhcCCccccccccchhhhhhHhhhhhhHHHHHHHHHHhhhhc
Q psy2990 86 RHMRTPTNAVLMAMALSDMFTLLF-PAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAV 160 (162)
Q Consensus 86 ~~l~~~~~~~i~nLa~~Dll~~~~-~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~s~~~l~~isi 160 (162)
.+..+|.+..+.+||+++.++.+. ++|...... .|..+++.+||+..|++ ......|+.+.+.+|+
T Consensus 5 ~~r~kp~dlIl~hLa~aN~lvLl~rGip~~~~~~-----~~~~~~d~gCK~v~Y~~----RV~RglSictTCLLSv 71 (265)
T PF03402_consen 5 GHRLKPIDLILIHLALANILVLLSRGIPQTMAFF-----GWKFFDDIGCKIVFYIY----RVARGLSICTTCLLSV 71 (265)
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHh-----hcccCCCceeeeeeeeh----HHhchhhHHhhhHHHH
Confidence 345679999999999999999886 777544422 23344899999999999 8888999888887764
No 17
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=96.19 E-value=0.026 Score=45.04 Aligned_cols=100 Identities=15% Similarity=0.203 Sum_probs=63.4
Q ss_pred chhhhHHHHHHHHHHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccch
Q psy2990 55 RYAQPMYGYVMPFLLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAAC 133 (162)
Q Consensus 55 ~~~~~~~~~~~~~i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C 133 (162)
+.+++++++.+.+..++-.+.....+. +++++..|.+.+-.+.-||+.|++.+......... .-+.|...|
T Consensus 29 g~~~p~~G~~~~~~g~~~~~lY~p~~~~i~~~~~~k~~~ykiM~~L~i~Di~~l~~~si~tG~--------l~i~G~vfC 100 (313)
T PF10321_consen 29 GVKRPILGIYFLIFGIIIIILYIPCLIAIFKKKLFKMSCYKIMFFLAIFDIIQLFINSIITGI--------LAIFGAVFC 100 (313)
T ss_pred CCcccchhHHHHHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHhhhhhhhH--------HHhcCcccc
Confidence 455578888888888888888887775 45666677999999999999999987654322222 112367777
Q ss_pred hhhhhH--hhhhhhHHHHHHHHHHhhhhccC
Q psy2990 134 YAWNIM--NEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 134 ~~~~~~--~~~~~~~~~~~s~~~l~~isidR 162 (162)
+.-.+. .+.+...+=+++...-..++++|
T Consensus 101 ~~P~~~~i~G~~~~~~W~~~c~~~i~LainR 131 (313)
T PF10321_consen 101 SYPRFIYIMGCIALGSWCGSCIICILLAINR 131 (313)
T ss_pred CCchHhhhhhccchhhHHHHHHHHHHHHHHH
Confidence 654432 22222222244444445555555
No 18
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents the chemoreceptor Srd [].
Probab=89.82 E-value=0.57 Score=36.77 Aligned_cols=48 Identities=17% Similarity=0.372 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhhhhheeh-he-ecCCCCChhHHHHHHHHHHHHHHHHhhh
Q psy2990 64 VMPFLLLITIIANTLIVV-VL-SKRHMRTPTNAVLMAMALSDMFTLLFPA 111 (162)
Q Consensus 64 ~~~~i~~~gi~gN~~vl~-v~-~~~~l~~~~~~~i~nLa~~Dll~~~~~~ 111 (162)
++.+.+.+|++.|++.++ ++ +.++.-+...+++.|-|+.|++.+....
T Consensus 4 ~~~~~~~~~~~~n~~Ll~~i~~~tp~~l~~~~~~l~~~~~~~~~~~~~~~ 53 (292)
T PF10317_consen 4 YHPIFFILGIILNILLLYLIIFKTPKSLRTYSILLLNTAIFDLISIISAF 53 (292)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999998885 44 4445556788999999999999887443
No 19
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class b (Srb) from the Sra superfamily []. Srb receptors contain 6-8 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. Srbc is a solo family amongst the superfamilies of chemoreceptors.
Probab=89.12 E-value=0.95 Score=35.50 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHhhhhheeh-heecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccc-hhhhhhH
Q psy2990 62 GYVMPFLLLITIIANTLIVV-VLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAA-CYAWNIM 139 (162)
Q Consensus 62 ~~~~~~i~~~gi~gN~~vl~-v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~-C~~~~~~ 139 (162)
..+-.+...+....|...++ +...|+.|++.-.++---...|.+.+....+......... | . .+.. -+...+.
T Consensus 9 ~~i~i~~s~~~~~iN~~lL~~if~~Kk~kk~~l~LfY~Rf~~D~~~~~~~~~~~~~~~~~~---~-~-~~~~~~~~~if~ 83 (273)
T PF10316_consen 9 SIIGIIFSIITCLINFYLLYSIFYSKKKKKPDLSLFYFRFAIDVFYGFSVFIYLIYYILFS---L-F-PEFLDYKNLIFY 83 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccCCCCEEeeHHHHHHHHHHHHHHHHHHHHHHHHH---h-C-hhhhccccEEee
Confidence 33444555667888988774 4433445555555666678999999997766555433221 1 1 1111 2222222
Q ss_pred hhhhhhHHHHHHHHHHhhhhccC
Q psy2990 140 NEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 140 ~~~~~~~~~~~s~~~l~~isidR 162 (162)
..+-....+.+.......||+||
T Consensus 84 ~~~p~~~~~~iR~~l~~~Ia~dR 106 (273)
T PF10316_consen 84 IGWPSSNLGSIRSILALIIALDR 106 (273)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHH
Confidence 33333555667777888899998
No 20
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=87.53 E-value=0.36 Score=36.45 Aligned_cols=89 Identities=20% Similarity=0.124 Sum_probs=2.8
Q ss_pred HHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCccccccccchhhhhhHhhhh
Q psy2990 65 MPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVI 143 (162)
Q Consensus 65 ~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~ 143 (162)
..+.+.+.+++=.+.+.. ...|++|+..+....||++++++..+..+..... ...+ ..+. .+..|+..+.+.
T Consensus 7 ~~vg~~~Si~~ll~~i~~~~~~r~lr~~~~~i~~~l~~sll~~~~~~l~~~~~-~~~~--~~~~-~~~~C~~~a~~~--- 79 (242)
T PF00002_consen 7 SYVGCSLSIICLLLTIITYLLFRKLRSFRNKIHLNLCLSLLLANLSFLIGISQ-TFSP--ISTT-NHCLCRAIAILL--- 79 (242)
T ss_dssp HHHHHH--------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhhhHHHHHHHHHHHheehhh-cccc--cccc-ccccchhhhhHh---
Confidence 334455556655444432 3457888877888999999999876643322111 0000 0000 122499988877
Q ss_pred hhHHHHHHHHHHhhhhcc
Q psy2990 144 PTLFHTASIWLTLALAVQ 161 (162)
Q Consensus 144 ~~~~~~~s~~~l~~isid 161 (162)
..+..++...+.+.++|
T Consensus 80 -hy~~la~f~Wm~~~~~~ 96 (242)
T PF00002_consen 80 -HYFFLASFFWMLVEAFY 96 (242)
T ss_dssp ------------------
T ss_pred -HHHHHHHHHHHHHHHHH
Confidence 66666666666655543
No 21
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=85.60 E-value=6.5 Score=31.33 Aligned_cols=97 Identities=12% Similarity=0.104 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhhhheehh-eecCCCCChhHHHHHHHHHHHHHHHHhhhhHH---HHHHHhcCCcccc-ccccchhhh
Q psy2990 62 GYVMPFLLLITIIANTLIVVV-LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWL---FYMYTFGNHYKPL-SPVAACYAW 136 (162)
Q Consensus 62 ~~~~~~i~~~gi~gN~~vl~v-~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~---~~~~~~~~~~~~~-~~~~~C~~~ 136 (162)
..+-.+++++|++.++..++- ..++..|.-..+++....++.++.+..-.-.. +..+......-+. .+...|-..
T Consensus 20 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~H~N~ril~~~~~~~~l~~~~~r~~~h~~~l~~~~~~~~~Cd~~~~~~~C~~l 99 (324)
T PF10292_consen 20 LIFNLLLSIIAFPVIIYALWKIRNSKLFHFNTRILFIVHCFSFLIHCTGRIILHTYDLYNYFFPDDPCDMIPSTYRCFIL 99 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcccccchhHHHHH
Confidence 345667777788877776653 46677888888888888888888765322222 2222221111111 133456555
Q ss_pred hhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990 137 NIMNEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 137 ~~~~~~~~~~~~~~s~~~l~~isidR 162 (162)
-... .++.+.+..+..++.+||
T Consensus 100 R~~~----~~~~~~~~~t~v~l~IER 121 (324)
T PF10292_consen 100 RIPY----NFGLFLVSFTTVSLVIER 121 (324)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHH
Confidence 5555 788889999999999998
No 22
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=81.61 E-value=2.3 Score=33.29 Aligned_cols=41 Identities=22% Similarity=0.454 Sum_probs=27.9
Q ss_pred HHHhhhhheeh-he--ecCC--CCChhHHHHHHHHHHHHHHHHhhh
Q psy2990 71 ITIIANTLIVV-VL--SKRH--MRTPTNAVLMAMALSDMFTLLFPA 111 (162)
Q Consensus 71 ~gi~gN~~vl~-v~--~~~~--l~~~~~~~i~nLa~~Dll~~~~~~ 111 (162)
+.++-.+.+++ ++ |+++ ++++-+-++.+-+++|++..+...
T Consensus 7 ~tlply~~il~~l~~~r~~~~~~~~~Fy~l~~~~~iaDi~~~~~~~ 52 (283)
T PF10323_consen 7 VTLPLYIFILYCLLKLRKRSKTFKSTFYTLLIQHCIADILSMLFYF 52 (283)
T ss_pred ehHHHHHHHHHHHHHcccCccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455553 23 3333 679999999999999999877543
No 23
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class a (Sra) from the Sra superfamily []. Sra receptors contain 6-7 hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016021 integral to membrane
Probab=63.75 E-value=48 Score=26.60 Aligned_cols=99 Identities=14% Similarity=0.366 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHhhhhheehhe-ecCCCC-ChhHHHHHHHHHHHHHHHHhhh--hHHHHHHHh--cCCccccccccch
Q psy2990 60 MYGYVMPFLLLITIIANTLIVVVL-SKRHMR-TPTNAVLMAMALSDMFTLLFPA--PWLFYMYTF--GNHYKPLSPVAAC 133 (162)
Q Consensus 60 ~~~~~~~~i~~~gi~gN~~vl~v~-~~~~l~-~~~~~~i~nLa~~Dll~~~~~~--p~~~~~~~~--~~~~~~~~~~~~C 133 (162)
+...+..++.+++.++-...+-.+ ++.-.. +....++.+|..+++=-..... -..+..... .++.-..+....|
T Consensus 22 ~~~~~~~~~~~~t~~~s~~Ai~~l~~ksif~~sTr~LL~~~l~~a~~Hq~~y~~~~~~~lyrsf~~~~dpC~i~f~~~eC 101 (328)
T PF02117_consen 22 INQIFILIIIIITFIFSVFAIKKLWKKSIFSNSTRILLISNLLFANIHQISYAIIQIWSLYRSFFYSDDPCSILFTSSEC 101 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeEeecCce
Confidence 334455555666666665555444 444444 3555677777777554333211 122222221 2222223466788
Q ss_pred hhhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990 134 YAWNIMNEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 134 ~~~~~~~~~~~~~~~~~s~~~l~~isidR 162 (162)
....... ..+....++.-.++++||
T Consensus 102 ~~~~~~~----~~~~~~~~~~q~aL~idR 126 (328)
T PF02117_consen 102 FPYYYFY----YFTNSGMIFIQFALTIDR 126 (328)
T ss_pred eeeehHH----HHHHHHHHHHHHHHHHHH
Confidence 8877766 666677788899999998
No 24
>PF09882 DUF2109: Predicted membrane protein (DUF2109); InterPro: IPR019214 This entry is found in various hypothetical archaeal proteins and has no known function.
Probab=53.96 E-value=18 Score=22.72 Aligned_cols=48 Identities=21% Similarity=0.339 Sum_probs=35.4
Q ss_pred HHHHHhhhhhee-hheecCCCCChhHHHHHHHHHHHHHHHHhhhhHHHH
Q psy2990 69 LLITIIANTLIV-VVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFY 116 (162)
Q Consensus 69 ~~~gi~gN~~vl-~v~~~~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~ 116 (162)
.++|+++=...+ .++-+.+.|+-.+.-.+|-+++-++....--|+..+
T Consensus 4 ~i~g~Iai~~~iR~~~~~~r~~KL~yLnv~~F~iaalIaL~i~~P~g~i 52 (78)
T PF09882_consen 4 IIIGIIAILMAIRIFLTKSRARKLLYLNVINFAIAALIALYIKSPMGAI 52 (78)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHhhhHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 344555544555 446677888889999999999999998887777665
No 25
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents Sri, which is part of the Str superfamily of chemoreceptors.
Probab=46.24 E-value=70 Score=25.27 Aligned_cols=59 Identities=14% Similarity=0.207 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHhhhhheeh-h-eecCCCCChhHHHH---HHHHHHHHHHHHhhhhHHHHHH
Q psy2990 60 MYGYVMPFLLLITIIANTLIVV-V-LSKRHMRTPTNAVL---MAMALSDMFTLLFPAPWLFYMY 118 (162)
Q Consensus 60 ~~~~~~~~i~~~gi~gN~~vl~-v-~~~~~l~~~~~~~i---~nLa~~Dll~~~~~~p~~~~~~ 118 (162)
++...+-+++++.++.|.+.++ + .+.+++.+-.++++ ....++|+-.++...|..+...
T Consensus 10 ~li~~~~~ig~iS~~~n~~~iyLi~fks~k~~~fry~ll~~Qi~~~l~di~~t~L~qpipLfP~ 73 (303)
T PF10327_consen 10 WLINYYHIIGVISFILNSLGIYLIIFKSPKLDNFRYYLLYFQISCTLTDIHLTFLMQPIPLFPI 73 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeEEEecCCccchhhHHHHHHHHHHHhhhhhhhhccchhhcce
Confidence 5556788999999999999884 3 45566666554433 4567889999988888777543
No 26
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity.
Probab=44.57 E-value=72 Score=25.36 Aligned_cols=65 Identities=12% Similarity=0.121 Sum_probs=37.5
Q ss_pred ChhHHHHHHHHHHHHHHHHh----hhhHHHHHHHhcCCccccccccchhhhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990 90 TPTNAVLMAMALSDMFTLLF----PAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 90 ~~~~~~i~nLa~~Dll~~~~----~~p~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~s~~~l~~isidR 162 (162)
-+-..|+..|.++-++.... .+|-.+......+.. ....-.+. ++..-.+.++-.++=.+||++|
T Consensus 47 m~ffwFl~qlt~s~fi~S~lNl~inVPatlfsl~t~~~~----~s~~f~~~----Sy~idf~h~siLfsNlviaIqR 115 (305)
T PF04789_consen 47 MKFFWFLTQLTISVFIISSLNLLINVPATLFSLITKEFV----QSELFIFM----SYLIDFCHYSILFSNLVIAIQR 115 (305)
T ss_pred chHHHHHHHHHHHHHHHHhhhheEeCcHHHHHhhhHHHh----ccchhhHH----HHHHHHHHHHHHHHHHHHHHhh
Confidence 45788999999998887653 556555333322110 11111122 2333666777777777888877
No 27
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=42.69 E-value=1.7e+02 Score=24.40 Aligned_cols=24 Identities=17% Similarity=0.117 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHH
Q psy2990 93 NAVLMAMALSDMFTLLFPAPWLFY 116 (162)
Q Consensus 93 ~~~i~nLa~~Dll~~~~~~p~~~~ 116 (162)
.-.+..||++|++.++-.+-...+
T Consensus 68 ~rIl~~la~aDlLaclGVivRS~v 91 (405)
T PF02101_consen 68 RRILFWLAVADLLACLGVIVRSSV 91 (405)
T ss_pred chhHHHHHHHHHHhhhhHHHHhhh
Confidence 457889999999998844333333
No 28
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.11 E-value=22 Score=24.46 Aligned_cols=19 Identities=11% Similarity=0.324 Sum_probs=8.4
Q ss_pred HHhhhhhee-hheecCCCCC
Q psy2990 72 TIIANTLIV-VVLSKRHMRT 90 (162)
Q Consensus 72 gi~gN~~vl-~v~~~~~l~~ 90 (162)
|++|=++.| ++++|++.|.
T Consensus 76 GvIg~Illi~y~irR~~Kk~ 95 (122)
T PF01102_consen 76 GVIGIILLISYCIRRLRKKS 95 (122)
T ss_dssp HHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHHHhccC
Confidence 566654544 4455544444
No 29
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class g (Srg) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures. ; GO: 0004888 transmembrane signaling receptor activity, 0007606 sensory perception of chemical stimulus, 0016020 membrane
Probab=31.47 E-value=1.1e+02 Score=23.29 Aligned_cols=90 Identities=13% Similarity=0.138 Sum_probs=43.3
Q ss_pred HHHHHhhhhheehh-eecCC---CCChhHHHHHHHHHHHHHHHHhhhhH-HHHHHHhcCCc--ccc--ccccchhhhhhH
Q psy2990 69 LLITIIANTLIVVV-LSKRH---MRTPTNAVLMAMALSDMFTLLFPAPW-LFYMYTFGNHY--KPL--SPVAACYAWNIM 139 (162)
Q Consensus 69 ~~~gi~gN~~vl~v-~~~~~---l~~~~~~~i~nLa~~Dll~~~~~~p~-~~~~~~~~~~~--~~~--~~~~~C~~~~~~ 139 (162)
.+.+++.+..++++ .++|+ .+++-+.+..-=++.+++.-+...+. .+..+..+... .++ ......+...++
T Consensus 8 gi~s~~l~~~~~~~i~~~~~~~~~~~sFy~l~~~d~~~ni~~~ln~~~~~Rl~~~~~~~~~~~~~~~~~~~~~l~~~~~l 87 (275)
T PF02118_consen 8 GIPSLILYIFILYVIWKSKKKSYFKSSFYRLYIMDLIMNILTYLNTWITLRLPSYTPPFCPFFLPFFENPPFFLNIFYFL 87 (275)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCccHHHHHHHhHHHHHHHHHHHHHHHhccccCccchhHHHHHcCCcHHHHHHHHH
Confidence 34566666666643 33333 36666666665666666654433332 22211001000 000 012234444444
Q ss_pred hhhhhhHHHHHHHHHHhhhhccC
Q psy2990 140 NEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 140 ~~~~~~~~~~~s~~~l~~isidR 162 (162)
. ....++--.....||++|
T Consensus 88 ~----~~~~~~Q~~~~~~is~nR 106 (275)
T PF02118_consen 88 Q----YYFAYVQYLSTILISLNR 106 (275)
T ss_pred H----HHHHHHHHHHHHHHHHHH
Confidence 4 556666667777777776
No 30
>PF06681 DUF1182: Protein of unknown function (DUF1182); InterPro: IPR010601 This family consists of several hypothetical proteins of around 360 residues in length and seems to be specific to Caenorhabditis elegans. The function of this family is unknown.
Probab=29.69 E-value=45 Score=25.26 Aligned_cols=30 Identities=13% Similarity=0.231 Sum_probs=17.0
Q ss_pred cccchhhhhhHhhhhhhHHHHHHHHHHhhhhccC
Q psy2990 129 PVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162 (162)
Q Consensus 129 ~~~~C~~~~~~~~~~~~~~~~~s~~~l~~isidR 162 (162)
+-..|.+..-+. ..+........+++|+||
T Consensus 113 tI~vCSflk~f~----S~t~s~~~vip~aVAIyR 142 (226)
T PF06681_consen 113 TIFVCSFLKNFT----SSTTSCAQVIPVAVAIYR 142 (226)
T ss_pred EEEeehHHHhHH----HHHhhhhccchhhhhhhh
Confidence 445787755543 333333344445788887
No 31
>KOG4193|consensus
Probab=28.05 E-value=1.7e+02 Score=25.90 Aligned_cols=61 Identities=18% Similarity=0.313 Sum_probs=34.0
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHhhhhHHHHHHHhcCCcccccccc-chhhhhhHhhhhhhHHHHHHHHHHhhhhc
Q psy2990 86 RHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVA-ACYAWNIMNEVIPTLFHTASIWLTLALAV 160 (162)
Q Consensus 86 ~~l~~~~~~~i~nLa~~Dll~~~~~~p~~~~~~~~~~~~~~~~~~~-~C~~~~~~~~~~~~~~~~~s~~~l~~isi 160 (162)
|++++-.+....||+++=++.-+ ..+. + .|.-.... .|+..+++. .++..+..+.+..+++
T Consensus 348 ~~l~~~~~~i~~~l~~~L~l~~l----~fL~----~--~~~~~~~~~~C~~~a~ll----hff~LaaF~Wm~leg~ 409 (610)
T KOG4193|consen 348 RKLQNDRTKIHINLCLCLFLAEL----LFLL----G--IDRTSTSVVLCIAAAILL----HFFFLAAFFWMLLEGF 409 (610)
T ss_pred HHHHhhcchhHHHHHHHHHHHHH----HHhc----c--cccccCcccccHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 44444337777888888222211 1111 1 22221344 899988887 6666776666666554
No 32
>PHA03164 hypothetical protein; Provisional
Probab=24.24 E-value=59 Score=20.42 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=17.4
Q ss_pred cCCCCChhHHHHHHHHHHHHHHHHh
Q psy2990 85 KRHMRTPTNAVLMAMALSDMFTLLF 109 (162)
Q Consensus 85 ~~~l~~~~~~~i~nLa~~Dll~~~~ 109 (162)
+++.|+-+.+.+..||++=+++.++
T Consensus 52 nnrRktftFlvLtgLaIamILfiif 76 (88)
T PHA03164 52 NNRRKTFTFLVLTGLAIAMILFIIF 76 (88)
T ss_pred HhhhheeehHHHHHHHHHHHHHHHH
Confidence 4555666777788888887776653
No 33
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=24.05 E-value=56 Score=19.12 Aligned_cols=14 Identities=29% Similarity=0.375 Sum_probs=9.6
Q ss_pred HHHHHHHhhhhhee
Q psy2990 67 FLLLITIIANTLIV 80 (162)
Q Consensus 67 ~i~~~gi~gN~~vl 80 (162)
++.+--++||++++
T Consensus 10 viVlgvIigNia~L 23 (55)
T PF11446_consen 10 VIVLGVIIGNIAAL 23 (55)
T ss_pred HHHHHHHHhHHHHH
Confidence 34444578999887
Done!