RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2990
(162 letters)
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor
Srw. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srw is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'. The genes encoding Srw do not appear to be
under as strong an adaptive evolutionary pressure as
those of Srz.
Length = 317
Score = 41.4 bits (98), Expect = 6e-05
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 13/105 (12%)
Query: 66 PFLLLITIIANTLIVVVLSKRHMRT-PTNAVLMAMALSDMFTLLFP----APWLFYMYTF 120
L +I I N +++L+++ MRT N +++ +A+ D+ T+L P Y
Sbjct: 4 FILSIIGFIINIFHLIILTRKSMRTSSINIIMIGIAICDIITMLLTIYNFIPEFIISYEN 63
Query: 121 GNHYKPLSPVAACYAWNIMN---EVIPTLFHTASIWLTLALAVQR 162
P S Y +++ E + + S WL + +A+ R
Sbjct: 64 SECIPPDS-----YLKVLLDWILESLQDISRRCSTWLGVFMALIR 103
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family).
This family contains, amongst other G-protein-coupled
receptors (GCPRs), members of the opsin family, which
have been considered to be typical members of the
rhodopsin superfamily. They share several motifs, mainly
the seven transmembrane helices, GCPRs of the rhodopsin
superfamily. All opsins bind a chromophore, such as
11-cis-retinal. The function of most opsins other than
the photoisomerases is split into two steps: light
absorption and G-protein activation. Photoisomerases, on
the other hand, are not coupled to G-proteins - they are
thought to generate and supply the chromophore that is
used by visual opsins.
Length = 251
Score = 35.7 bits (83), Expect = 0.005
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 80 VVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIM 139
+V+L + +RTPTN L+ +A++D+ LL PW +Y P A C
Sbjct: 1 LVILRTKKLRTPTNIFLLNLAVADLLFLLTLPPWA--LYYLVGGDWPFGD-ALCKLVG-- 55
Query: 140 NEVIPTLFHTASIWLTLALAVQR 162
+ + ASI L A+++ R
Sbjct: 56 --FLFVVNGYASILLLTAISIDR 76
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like
protein; Provisional.
Length = 335
Score = 31.3 bits (71), Expect = 0.16
Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 3/55 (5%)
Query: 63 YVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDM-FTLLFPAPWLFY 116
Y F ++ N +++ VL+K ++TP + L+ +A+SD+ F + P +Y
Sbjct: 47 YSTIFFF--GLVGNIIVIYVLTKTKIKTPMDIYLLNLAVSDLLFVMTLPFQIYYY 99
>gnl|CDD|236945 PRK11644, PRK11644, sensory histidine kinase UhpB; Provisional.
Length = 495
Score = 31.1 bits (71), Expect = 0.25
Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Query: 66 PFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYK 125
L + A L+ + H + NA+L+ L+ TL P LF+ Y N +
Sbjct: 109 LLLQGAALTAAALLQSLPWLWHGKEGWNALLLT--LTGGLTLA-PTCLLFWHYLAQNTWL 165
Query: 126 PLSP--VAACYAWNIMNEVIPTLFHTASIWLTLAL 158
PL P V+ W + V L SIWL L L
Sbjct: 166 PLGPSLVSQPVNWRGRHIVWYLLLFVLSIWLQLGL 200
>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
22A1-like. Aldehyde dehydrogenase family members
ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
(Arabidopsis thaliana, EC=1.2.1.3), and similar
sequences, are in this CD. Significant improvement of
stress tolerance in tobacco plants was observed by
overexpressing the ALDH22A1 gene from maize (Zea mays)
and was accompanied by a reduction of malondialdehyde
derived from cellular lipid peroxidation.
Length = 465
Score = 29.2 bits (66), Expect = 0.96
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 123 HYKPLSPVAACYAWN-----IMNEVIPTLF 147
Y+PL V A +WN ++ +I LF
Sbjct: 117 EYEPLGVVGAIVSWNYPFHNLLGPIIAALF 146
>gnl|CDD|129901 TIGR00821, EII-GUT, PTS system, glucitol/sorbitol-specific, IIC
component. Bacterial PTS transporters transport and
concomitantly phosphorylate their sugar substrates, and
typically consist of multiple subunits or protein
domains. The Gut family consists only of
glucitol-specific transporters, but these occur both in
Gram-negative and Gram-positive bacteria.E. coli
consists of IIA protein, a IIC protein and a IIBC
protein. This family is specific for the IIC component
[Transport and binding proteins, Carbohydrates, organic
alcohols, and acids, Signal transduction, PTS].
Length = 181
Score = 28.3 bits (63), Expect = 1.4
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 5/86 (5%)
Query: 64 VMPFLLLITIIANTLIVVV----LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYT 119
++P L+ + +I N LI + + + N VL + L + T +F P +
Sbjct: 30 ILPLLISLLVIMNALIAFIGQDRIERFAQFCAGNPVLRYLVLPFIGTFVFCNPMTLSLGK 89
Query: 120 F-GNHYKPLSPVAACYAWNIMNEVIP 144
F YKP AA Y+ + MN + P
Sbjct: 90 FLPEKYKPSYYAAASYSCHSMNGLFP 115
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 27.5 bits (61), Expect = 1.7
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
Query: 60 MYGYVMPFLLLITIIANTLIVV 81
M+G MP L++I +IA LIV+
Sbjct: 1 MFGIGMPELIVILVIA--LIVI 20
>gnl|CDD|218544 pfam05296, TAS2R, Mammalian taste receptor protein (TAS2R). This
family consists of several forms of mammalian taste
receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled
receptors expressed in subsets of taste receptor cells
of the tongue and palate epithelia and are organised in
the genome in clusters. The proteins are genetically
linked to loci that influence bitter perception in mice
and humans.
Length = 303
Score = 28.0 bits (63), Expect = 2.3
Identities = 22/104 (21%), Positives = 39/104 (37%), Gaps = 17/104 (16%)
Query: 64 VMPFLLLITIIANTLIVVVLS----KRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYT 119
V L+ I+ N IV+V K+ + + +L ++A+S + WL +
Sbjct: 12 VAVVEFLLGILGNGFIVLVNCIDWVKKRKLSSIDLILTSLAISRICLQ-----WLILLDN 66
Query: 120 FGNHYKPLSPVAACYAWNIMNEVIP---TLFHTASIWLTLALAV 160
F P Y + +I T + S+W L+V
Sbjct: 67 F---IIVFFPNT--YLSGKLLRIISLFWTFLNHLSLWFATCLSV 105
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor
Srsx. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srsx is a solo family
amongst the superfamilies of chemoreceptors.
Chemoperception is one of the central senses of soil
nematodes like C. elegans which are otherwise 'blind'
and 'deaf'.
Length = 257
Score = 27.9 bits (63), Expect = 2.4
Identities = 17/95 (17%), Positives = 36/95 (37%), Gaps = 10/95 (10%)
Query: 69 LLITIIAN-TLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPL 127
+I I N +I++ K+ +R+ + ++ L+D+ L ++ ++T
Sbjct: 1 SVIGIFGNVIMIILTFKKKKLRSKCSYLICVQCLADLLCLSGEIIFVVLLFTGTQ----- 55
Query: 128 SPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
C+ I TA L L + + R
Sbjct: 56 LTRNECFLIII----PYIFGQTAQSPLMLMIGIDR 86
>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
Length = 407
Score = 27.7 bits (62), Expect = 3.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 39 MMQGFDYLNISTELPIRYAQ 58
++Q DYLN+S I AQ
Sbjct: 58 ILQSNDYLNLSGHPDIIKAQ 77
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 27.3 bits (60), Expect = 3.9
Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 15/112 (13%)
Query: 14 VTEMTTTEILNASISPSNMTGLADDMMQG----FDYL---NISTELPIRYAQPMY----G 62
TE+ TEI + N + +DY NI+ EL + MY
Sbjct: 40 FTEIIPTEIPTSESPSPNSNSSSSSSSSSSSITYDYEYENNITYELINIKNKCMYPSISE 99
Query: 63 YVMPFLLLITIIA---NTLIVVVLSKRHMRTPTNAVLMAMALSDM-FTLLFP 110
Y+ F ++I I+ N I+++L + ++T T+ + +A+SD+ F + FP
Sbjct: 100 YIKIFYIIIFILGLFGNAAIIMILFCKKIKTITDIYIFNLAISDLIFVIDFP 151
>gnl|CDD|216179 pfam00898, Orbi_VP2, Orbivirus outer capsid protein VP2. VP2 acts
as an anchor for VP1 and VP3. VP2 contains a
non-specific DNA and RNA binding domain in the
N-terminus.
Length = 946
Score = 27.3 bits (61), Expect = 4.0
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 53 PIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSD 103
P+R G V+P LL IT+ A + + T+ + + D
Sbjct: 49 PLRN----DGIVLPRLLDITLRAYDDRKSQKKAKGVEFMTDTKWVKWMIDD 95
>gnl|CDD|234400 TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa. This
model represents the N-terminal domain or EccCa subunit
of the type VII secretion protein EccC as found in the
Actinobacteria. Type VII secretion is defined more
broadly as including secretion systems for ESAT-6-like
proteins in the Firmicutes as well as in the
Actinobacteria, but this family does not show close
homologs in the Firmicutes [Protein fate, Protein and
peptide secretion and trafficking].
Length = 661
Score = 26.9 bits (60), Expect = 5.7
Identities = 8/52 (15%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 59 PMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFP 110
+ ++P ++++ ++ ++++ S R P + M L M +L
Sbjct: 2 SVLQKLLPVVMVVAMVG-MVVMMFASGGRQRNPMFLIFPLMMLVSMLGMLAG 52
>gnl|CDD|226369 COG3851, UhpB, Signal transduction histidine kinase,
glucose-6-phosphate specific [Signal transduction
mechanisms].
Length = 497
Score = 26.7 bits (59), Expect = 7.1
Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 11/96 (11%)
Query: 68 LLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFT---LLFPAPWLFYMYTFGNHY 124
L + A +L+ L + AL T LL P +LF+ Y N +
Sbjct: 110 LQGALVTAASLLNG-LPPLWHGAES-----WNALLLSLTGGLLLTPFCYLFWDYLANNTW 163
Query: 125 KPLSP--VAACYAWNIMNEVIPTLFHTASIWLTLAL 158
PL P + + V L + L L L
Sbjct: 164 LPLGPSLIHHPINLRGKHLVWYLLLFIIGLLLQLGL 199
>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
Provisional.
Length = 459
Score = 26.6 bits (59), Expect = 7.2
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 100 ALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNE 141
A ++F++LF P+L + TFG + PL+ AA N++ E
Sbjct: 314 ATEEVFSVLFDNPFL-HTTTFGGN--PLACAAALATINVLLE 352
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.135 0.412
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,186,789
Number of extensions: 742461
Number of successful extensions: 1175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1164
Number of HSP's successfully gapped: 87
Length of query: 162
Length of database: 10,937,602
Length adjustment: 89
Effective length of query: 73
Effective length of database: 6,990,096
Effective search space: 510277008
Effective search space used: 510277008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (24.9 bits)