RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2990
         (162 letters)



>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
           protei photoreceptor, signaling protein; HET: MAN NAG
           BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
           PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
           2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
           1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
           ...
          Length = 349

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 34/148 (22%), Positives = 62/148 (41%), Gaps = 15/148 (10%)

Query: 17  MTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIAN 76
           M  TE  N  +  SN TG+       F+        P +++  M    M  L+++    N
Sbjct: 2   MNGTEGPNFYVPFSNKTGVVRSP---FEAPQYYLAEPWQFS--MLAAYMFLLIMLGFPIN 56

Query: 77  TL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVA-ACY 134
            L + V +  + +RTP N +L+ +A++D+F +         +YT  + Y    P      
Sbjct: 57  FLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFT--TTLYTSLHGYFVFGPTGCNLE 114

Query: 135 AWNIMNEVIPTLFHTASIWLTLALAVQR 162
            +        TL    ++W  + LA++R
Sbjct: 115 GF------FATLGGEIALWSLVVLAIER 136


>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics,
           PSI-2, protein structure initiative, AC technologies
           center for gene to 3D structure; HET: ETQ MAL; 2.89A
           {Homo sapiens}
          Length = 481

 Score = 50.9 bits (121), Expect = 3e-08
 Identities = 28/115 (24%), Positives = 52/115 (45%), Gaps = 7/115 (6%)

Query: 49  STELPIRYAQPMYGYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTL 107
           ST          Y      L+L  +  N L  + VL +R ++T TN +++++A++D+   
Sbjct: 29  STGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAVADLLVA 88

Query: 108 LFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
               PW+ Y+   G      S +  C  +  ++     +  TASIW   A+++ R
Sbjct: 89  TLVMPWVVYLEVTG-GVWNFSRI-CCDVFVTLD----VMMCTASIWNLCAISIDR 137


>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor,
           lipid receptor, multiple sclerosi autoimmunity,
           structural genomics, PSI-biology; HET: ML5 NAG; 2.80A
           {Homo sapiens} PDB: 3v2w_A*
          Length = 520

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 17/104 (16%), Positives = 36/104 (34%), Gaps = 9/104 (8%)

Query: 60  MYGYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMY 118
           +   V   +    I+ N   ++ +   +    P    +  +ALSD+   +     L    
Sbjct: 65  LTSVVFILICCFIILENIFVLLTIWKTKKFHRPMYYFIGNLALSDLLAGVAYTANLLLSG 124

Query: 119 TFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
                  P    A  +           +  +AS++  LA+A++R
Sbjct: 125 ATTYKLTP----AQWFLREGSM----FVALSASVFSLLAIAIER 160


>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR,
           membrane protein, LCP, mesophase, structural genomics,
           PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*
          Length = 488

 Score = 47.8 bits (113), Expect = 3e-07
 Identities = 20/114 (17%), Positives = 43/114 (37%), Gaps = 16/114 (14%)

Query: 53  PIRYAQPMYGYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPA 111
           P      +Y  V   + ++ I+ N L    V    +++  TN  ++++A +D+   +   
Sbjct: 16  PPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAADIAVGVLAI 75

Query: 112 PW---LFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
           P+   +   +    H         C            +   +SI+  LA+A+ R
Sbjct: 76  PFAITISTGFCAACHG--------CLFIACFV----LVLTQSSIFSLLAIAIDR 117


>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
           chromophore, glycoprotein, lipoprotein, membrane,
           palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
           2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
          Length = 448

 Score = 46.5 bits (110), Expect = 8e-07
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 11/111 (9%)

Query: 55  RYAQPMYGYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDM-FTLLFPAP 112
                  G  +    +I    N + I +    + ++TP N  ++ +A SD  F+L+   P
Sbjct: 31  DAVYYSLGIFIGICGIIGCGGNGIVIYLFTKTKSLQTPANMFIINLAFSDFTFSLVNGFP 90

Query: 113 WLFYMYTFGNHYKPLSPVA-ACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
                 +           A   Y +      I  +F   SI     +++ R
Sbjct: 91  --LMTISCFLKKWIFGFAACKVYGF------IGGIFGFMSIMTMAMISIDR 133


>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein
           engineering, GPCR network, PSI-biology, struct genomics,
           membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A
           {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A*
           3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A
          Length = 447

 Score = 46.6 bits (110), Expect = 9e-07
 Identities = 22/123 (17%), Positives = 46/123 (37%), Gaps = 16/123 (13%)

Query: 44  DYLNISTELPIRYAQPMYGYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALS 102
           DY +     P      +Y  V   + ++ I+ N L    V    +++  TN  ++++A +
Sbjct: 17  DYKDDDDGAPPIMGSSVYITVELAIAVLAILGNVLVCWAVWLNSNLQNVTNYFVVSLAAA 76

Query: 103 DMFTLLFPAPW---LFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALA 159
           D+   +   P+   +   +    H         C            +   +SI+  LA+A
Sbjct: 77  DIAVGVLAIPFAITISTGFCAACHG--------CLFIACFV----LVLTQSSIFSLLAIA 124

Query: 160 VQR 162
           + R
Sbjct: 125 IDR 127


>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics,
           PSI-biology, membrane protein, GPCR NET GPCR, hydrolase;
           HET: 5EH D7V OLC; 3.10A {Homo sapiens}
          Length = 452

 Score = 43.5 bits (102), Expect = 9e-06
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 8/104 (7%)

Query: 60  MYGYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMY 118
               V+  + L+T+  N L +  V S+R + T  N  +++++++D+       P    + 
Sbjct: 10  PLVVVLSTICLVTVGLNLLVLYAVRSERKLHTVGNLYIVSLSVADLIVGAVVMP--MNIL 67

Query: 119 TFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
                   L     C  W  M+     +  TASI+    L + R
Sbjct: 68  YLLMSKWSLGRP-LCLFWLSMD----YVASTASIFSVFILCIDR 106


>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G
           protein-coupled receptor, GPCR, SI protein-antagonist
           complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*
          Length = 467

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 8/102 (7%)

Query: 62  GYVMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTF 120
             V   L L+TII N L +V +   RH++T  N  L ++A +D+   +F      Y    
Sbjct: 27  VLVAGSLSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMN--LYTLYT 84

Query: 121 GNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
              Y PL PV  C  W  ++     +   AS+   L ++  R
Sbjct: 85  VIGYWPLGPV-VCDLWLALD----YVVSNASVMNLLIISFDR 121


>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion,
           lipidic cubic phase, lipidic, mesophase, cholesterol,
           membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo
           sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A*
           3pds_A*
          Length = 500

 Score = 43.2 bits (101), Expect = 1e-05
 Identities = 29/140 (20%), Positives = 48/140 (34%), Gaps = 8/140 (5%)

Query: 24  NASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIANTL-IVVV 82
           +A   P N +       +     +  T+          G VM  ++L  +  N L I  +
Sbjct: 6   DAMGQPGNGSAFLLAPNRSHAPDHDVTQQRDEVWVVGMGIVMSLIVLAIVFGNVLVITAI 65

Query: 83  LSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEV 142
                ++T TN  + ++A +D+   L   P  F                 C  W  ++  
Sbjct: 66  AKFERLQTVTNYFITSLACADLVMGLAVVP--FGAAHILMKMWTFGNF-WCEFWTSID-- 120

Query: 143 IPTLFHTASIWLTLALAVQR 162
              L  TASI     +AV R
Sbjct: 121 --VLCVTASIETLCVIAVDR 138


>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor,
           nanobody, G protein-coupled RE GPCR, signal
           transduction, G protein signaling; HET: P0G; 3.20A
           {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A
          Length = 514

 Score = 39.9 bits (93), Expect = 1e-04
 Identities = 28/105 (26%), Positives = 45/105 (42%), Gaps = 18/105 (17%)

Query: 64  VMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPW-----LFYM 117
           VM  ++L  +  N L I  +     ++T TN  + ++A +D+   L   P+     L   
Sbjct: 188 VMSLIVLAIVFGNVLVITAIAKFERLQTVTNYFITSLACADLVMGLAVVPFGAAHILTKT 247

Query: 118 YTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
           +TFGN +        C  W  ++     L  TASI     +AV R
Sbjct: 248 WTFGNFW--------CEFWTSID----VLCVTASIETLCVIAVDR 280


>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide
           receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A
           2ksb_A
          Length = 364

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 11/54 (20%), Positives = 25/54 (46%), Gaps = 1/54 (1%)

Query: 70  LITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGN 122
           + +++ N + + ++L+ + MRT TN  L+ +A ++     F     F       
Sbjct: 44  VTSVVGNVVVMWIILAHKRMRTVTNYFLVNLAFAEASMAAFNTVVNFTYAVHNE 97


>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR
           BETA1-adrenoceptor, stabilising mutat biased agonist;
           HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A*
           2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A*
           2ycx_A* 2ycy_A* 2ycz_A*
          Length = 315

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 23/105 (21%), Positives = 46/105 (43%), Gaps = 18/105 (17%)

Query: 64  VMPFLLLITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPW-----LFYM 117
           +M  ++L+ +  N L I  + S + ++T TN  + ++A +D+   L   P+     +   
Sbjct: 17  LMALVVLLIVAGNVLVIAAIGSTQRLQTLTNLFITSLACADLVVGLLVVPFGATLVVRGT 76

Query: 118 YTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR 162
           + +G+          C  W  ++     L  TASI     +A+ R
Sbjct: 77  WLWGSFL--------CELWTSLD----VLCVTASIETLCVIAIDR 109


>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural
           genomics, PSI-2, protein structure initiative; HET: ITD
           OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A*
           3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*
          Length = 502

 Score = 31.4 bits (71), Expect = 0.13
 Identities = 20/97 (20%), Positives = 39/97 (40%), Gaps = 14/97 (14%)

Query: 37  DDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLIT----IIANTL-IVVVLSKRHMRTP 91
            + M   DY ++                +P +  I     I+ N L I+V+  ++ +R+ 
Sbjct: 23  TEEMGSGDYDSMKEPCFREENANFNKIFLPTIYSIIFLTGIVGNGLVILVMGYQKKLRSM 82

Query: 92  TNAVLMAMALSD---MFTLLFPAPWLFYMY---TFGN 122
           T+   + ++++D   + TL F   W         FGN
Sbjct: 83  TDKYRLHLSVADLLFVITLPF---WAVDAVANWYFGN 116


>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
           network, structural genomics, GPCR membrane 7TM NOP ORL1
           cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
           sapiens}
          Length = 434

 Score = 30.9 bits (70), Expect = 0.14
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 23/87 (26%)

Query: 56  YAQPMYGYVMPFLLLITIIA------------NTL-IVVVLSKRHMRTPTNAVLMAMALS 102
           Y Q   G  +P  L +TI+             N L + V+L    M+T TN  +  +AL+
Sbjct: 111 YIQKYLGAFLPLGLKVTIVGLYLAVCVGGLLGNCLVMYVILRHTKMKTATNIYIFNLALA 170

Query: 103 D---MFTLLFPAPWLFYMYT----FGN 122
           D   + TL F       +      FGN
Sbjct: 171 DTLVLLTLPF---QGTDILLGFWPFGN 194


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 30.0 bits (67), Expect = 0.33
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 14/65 (21%)

Query: 66  PFLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYK 125
           P  L    + + L+V          PT +  +A  L + F  + P P       F    +
Sbjct: 8   PLTLSHGSLEHVLLV----------PTASFFIASQLQEQFNKILPEP----TEGFAADDE 53

Query: 126 PLSPV 130
           P +P 
Sbjct: 54  PTTPA 58



 Score = 28.1 bits (62), Expect = 1.6
 Identities = 16/137 (11%), Positives = 42/137 (30%), Gaps = 46/137 (33%)

Query: 2    NNKALVVN--------MHMEVTEMTTTEILNASISPSNMTGLADDMMQGFDY------LN 47
            N   L ++        +    + M    I++  +    +    ++    + +      L+
Sbjct: 1668 NPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLS 1727

Query: 48   ISTELPIRYAQPMYGYVMPFLLLITIIANTLIVVVLSKRHMRTPTNAV-----------L 96
             +T+    + QP         L +   A       L  + +  P +A            L
Sbjct: 1728 -ATQ----FTQP--------ALTLMEKA---AFEDLKSKGL-IPADATFAGHSLGEYAAL 1770

Query: 97   MAMA----LSDMFTLLF 109
             ++A    +  +  ++F
Sbjct: 1771 ASLADVMSIESLVEVVF 1787


>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
           receptor, 7 transmembrane receptor, signal
           protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
           {Mus musculus} PDB: 4ej4_A* 4djh_A*
          Length = 464

 Score = 28.8 bits (64), Expect = 0.81
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 7/59 (11%)

Query: 70  LITIIANTL-IVVVLSKRHMRTPTNAVLMAMALSD-MFTLLFPAPWLFYM----YTFGN 122
           ++ +  N L + V++    M+T TN  +  +AL+D + T   P           + FGN
Sbjct: 29  VVGLFGNFLVMYVIVRYTKMKTATNIYIFNLALADALATSTLPF-QSVNYLMGTWPFGN 86


>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision
           repair, xeroderma pigmentosum, cytoplasm, DNA repair;
           HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A*
           3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A*
           3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A
           2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
          Length = 1158

 Score = 28.4 bits (62), Expect = 1.4
 Identities = 15/145 (10%), Positives = 40/145 (27%), Gaps = 15/145 (10%)

Query: 7   VVNMHMEVTEMTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMP 66
              + +   E+   E+L   I P +   +     +   YL  +          ++ + + 
Sbjct: 584 ARILKLPSFELLHKEMLGGEIIPRS---ILMTTFESSHYLLCALG-----DGALFYFGLN 635

Query: 67  FLLLITIIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKP 126
               +      + +           + +     A SD        P + Y       +  
Sbjct: 636 IETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSD-------RPTVIYSSNHKLVFSN 688

Query: 127 LSPVAACYAWNIMNEVIPTLFHTAS 151
           ++     Y   + ++  P     A+
Sbjct: 689 VNLKEVNYMCPLNSDGYPDSLALAN 713


>3t2c_A Fructose-1,6-bisphosphate aldolase/phosphatase; (beta/alpha)8 TIM
           barrel, FBP, F6P, DHAP, GAP, phosphorylati lyase,
           hydrolase; HET: 13P; 1.30A {Thermoproteus neutrophilus}
           PDB: 3t2b_A* 3t2d_A* 3t2e_A* 3t2f_A 3t2g_A*
          Length = 407

 Score = 26.9 bits (59), Expect = 3.7
 Identities = 9/37 (24%), Positives = 12/37 (32%)

Query: 109 FPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPT 145
           F  P L + +  G+H  PL P             I  
Sbjct: 255 FAHPHLVHGWMRGSHAGPLMPARFISVDPERRIAIGP 291


>3nqo_A MARR-family transcriptional regulator; structural genomics, joint
          center for structural genomics, J protein structure
          initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium
          difficile}
          Length = 189

 Score = 26.0 bits (57), Expect = 4.7
 Identities = 7/36 (19%), Positives = 14/36 (38%), Gaps = 1/36 (2%)

Query: 5  ALVVNMHMEVTEMTTTEILNA-SISPSNMTGLADDM 39
           ++  +H+   E T   I      S  N+  L  ++
Sbjct: 46 TILSILHLPEEETTLNNIARKMGTSKQNINRLVANL 81


>3up6_A Hypothetical protein bacova_04078; cell adhesion, major fimbrial
           subunit protein (FIMA), struct genomics; 2.80A
           {Bacteroides ovatus}
          Length = 347

 Score = 25.4 bits (54), Expect = 9.4
 Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 2   NNKALVVNMHMEVTEMTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMY 61
           +N  LVV +  E   +T+   L+   +      L + +      LN   ++      PM 
Sbjct: 76  SNDILVVVIANEPQSLTSQ--LDGIANLL---TLQEMIYDISSILNSDGQIISATGMPMT 130

Query: 62  G 62
           G
Sbjct: 131 G 131


>2ory_A Lipase; alpha/beta hydrolase, hydrolase; 2.20A {Photobacterium SP}
          Length = 346

 Score = 25.5 bits (55), Expect = 9.7
 Identities = 4/28 (14%), Positives = 9/28 (32%)

Query: 94  AVLMAMALSDMFTLLFPAPWLFYMYTFG 121
           +  +A+ L D+  +            F 
Sbjct: 180 SSTLALWLKDIQGVKLSQNIDISTIPFA 207


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0537    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,424,752
Number of extensions: 131563
Number of successful extensions: 352
Number of sequences better than 10.0: 1
Number of HSP's gapped: 337
Number of HSP's successfully gapped: 30
Length of query: 162
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 76
Effective length of database: 4,300,587
Effective search space: 326844612
Effective search space used: 326844612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.6 bits)