RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2990
         (162 letters)



>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 348

 Score = 46.5 bits (109), Expect = 3e-07
 Identities = 26/109 (23%), Positives = 44/109 (40%), Gaps = 6/109 (5%)

Query: 17  MTTTEILNASISPSNMTGLADDMMQGFDYLNISTELPIRYAQPMYGYVMPFLLLITIIAN 76
           M  TE  N  +  SN TG+     +   Y      L   +   M    M  L+++    N
Sbjct: 1   MNGTEGPNFYVPFSNKTGVVRSPFEAPQY-----YLAEPWQFSMLAAYMFLLIMLGFPIN 55

Query: 77  TL-IVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNHY 124
            L + V +  + +RTP N +L+ +A++D+F +        Y    G   
Sbjct: 56  FLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV 104


>d3bzna1 d.161.1.1 (A:2-429) Menaquinone-specific isochorismate
           synthase MenF {Escherichia coli [TaxId: 562]}
          Length = 428

 Score = 25.5 bits (55), Expect = 4.0
 Identities = 12/51 (23%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 73  IIANTLIVVVLSKRHMRTPTNAVLMAMALSDMFTLLFPAPWLFYMYTFGNH 123
           I    L  VVL++        + + A A+      L    + FYM   G +
Sbjct: 182 IAEGELDKVVLARA-TDLHFASPVNAAAMMAASRRLNLNCYHFYMAFDGEN 231


>d1umga_ d.280.1.1 (A:) ST0318 {Archaeon Sulfolobus tokodaii [TaxId:
           111955]}
          Length = 362

 Score = 25.1 bits (55), Expect = 4.2
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 109 FPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIP 144
           F  P L   +  G+HY PL PV+   A     +  P
Sbjct: 253 FAFPHLVPGWMRGSHYGPLMPVSQRDAKATRFDGPP 288


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.135    0.412 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 578,340
Number of extensions: 23749
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 7
Length of query: 162
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 83
Effective length of database: 1,322,926
Effective search space: 109802858
Effective search space used: 109802858
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 49 (23.2 bits)