BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2991
         (71 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q85FR5|RR2_CYAME 30S ribosomal protein S2, chloroplastic OS=Cyanidioschyzon
          merolae GN=rps2 PE=3 SV=1
          Length = 221

 Score = 31.2 bits (69), Expect = 1.8,   Method: Composition-based stats.
 Identities = 15/27 (55%), Positives = 18/27 (66%)

Query: 36 RVLFVHTGPCISLVVEKEKFRWSSFFL 62
          RVLFV T P  S+VVE+E  R   FF+
Sbjct: 64 RVLFVGTKPQASVVVEEEATRCGEFFI 90


>sp|Q553Y7|GCA_DICDI Guanylyl cyclase, membrane OS=Dictyostelium discoideum GN=gca PE=1
           SV=1
          Length = 1483

 Score = 28.9 bits (63), Expect = 9.1,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)

Query: 11  ELLPEHAAWVTWLSVDFYFTAYYTFRVLFV----HTGPCISLVVEKEKFRWSSF 60
           EL P+HA  V  +S+    +    F ++ V    HTGP +  ++ K+K  W  F
Sbjct: 454 ELCPDHAQRVAHMSLGM-LSVIRRFGIVQVRIGMHTGPVVGGIIGKKKLSWHLF 506


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.138    0.458 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,196,357
Number of Sequences: 539616
Number of extensions: 916862
Number of successful extensions: 1724
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1723
Number of HSP's gapped (non-prelim): 3
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)