Query psy2991
Match_columns 71
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 29240
Date Fri Aug 16 22:43:10 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2991.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2991hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kio_C Ribonuclease H2 subunit 46.3 6.4 0.00022 26.9 0.9 10 39-48 28-37 (166)
2 3puf_C Ribonuclease H2 subunit 44.7 7 0.00024 26.7 0.9 10 39-48 31-40 (167)
3 3p1i_A Ephrin type-B receptor 16.0 1.2E+02 0.0042 21.6 3.1 22 35-56 178-199 (200)
4 3etp_A Ephrin type-B receptor 15.9 1.2E+02 0.0042 21.3 3.0 23 34-56 161-183 (187)
5 2qtd_A Uncharacterized protein 13.1 82 0.0028 18.2 1.3 18 51-68 16-33 (105)
6 3fl7_A Ephrin receptor; ATP-bi 12.6 1.5E+02 0.0053 22.6 3.0 24 34-57 182-205 (536)
7 1tuw_A Tetracenomycin polyketi 12.5 55 0.0019 21.4 0.4 12 32-43 42-53 (109)
8 1rdu_A Conserved hypothetical 11.7 91 0.0031 18.2 1.2 19 50-68 16-34 (116)
9 2bba_A Ephrin type-B receptor 11.5 2.1E+02 0.0071 20.0 3.2 21 35-55 163-183 (185)
10 2wo1_A Ephrin type-A receptor; 11.5 1.9E+02 0.0066 20.2 3.0 22 35-56 155-176 (185)
No 1
>3kio_C Ribonuclease H2 subunit C; aicardi-goutieres syndrome, RNAse H2, protein complex, autoimmune disease, endonuclease, hydrolase, metal-binding; 2.90A {Mus musculus} PDB: 3p5j_C
Probab=46.27 E-value=6.4 Score=26.91 Aligned_cols=10 Identities=40% Similarity=0.570 Sum_probs=8.0
Q ss_pred EEeeecccee
Q psy2991 39 FVHTGPCISL 48 (71)
Q Consensus 39 FVhl~PC~sL 48 (71)
=+|++||.+-
T Consensus 28 ~~hlLPc~I~ 37 (166)
T 3kio_C 28 KLHLLPCDVL 37 (166)
T ss_dssp CEEEESSEES
T ss_pred ceeEeeeEec
Confidence 3799999874
No 2
>3puf_C Ribonuclease H2 subunit C; RNAse H fold, triple barrel fold, hydrolase, RNAse H; 3.10A {Homo sapiens} PDB: 3p56_C
Probab=44.67 E-value=7 Score=26.67 Aligned_cols=10 Identities=30% Similarity=0.471 Sum_probs=8.0
Q ss_pred EEeeecccee
Q psy2991 39 FVHTGPCISL 48 (71)
Q Consensus 39 FVhl~PC~sL 48 (71)
=+|++||.+-
T Consensus 31 ~~hlLPc~I~ 40 (167)
T 3puf_C 31 TLHLLPCEVA 40 (167)
T ss_dssp CEEEESSEEC
T ss_pred cceeeceEec
Confidence 4799999874
No 3
>3p1i_A Ephrin type-B receptor 3; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; 2.10A {Homo sapiens}
Probab=16.02 E-value=1.2e+02 Score=21.64 Aligned_cols=22 Identities=27% Similarity=0.700 Sum_probs=16.9
Q ss_pred EEEEEEeeeccceeeeeheeee
Q psy2991 35 FRVLFVHTGPCISLVVEKEKFR 56 (71)
Q Consensus 35 FRVlFVhl~PC~sLVvLnil~~ 56 (71)
|-.-|--.|.|.+|+...|.++
T Consensus 178 fYLAFqD~GAC~aLlsVrVfYk 199 (200)
T 3p1i_A 178 FYLAFQDQGACMSLISVRAFYK 199 (200)
T ss_dssp EEEEEEESSBCEEEEEEEEEEE
T ss_pred EEEEEccCCceEEEEEEEEEEe
Confidence 4556778999999998877543
No 4
>3etp_A Ephrin type-B receptor 2; EPH receptor, tyrosine kinase, alternative splicing, ATP- binding, glycoprotein, kinase, membrane, nucleotide- binding; 2.00A {Mus musculus} SCOP: b.18.1.4 PDB: 1nuk_A 1kgy_A 1shw_B*
Probab=15.93 E-value=1.2e+02 Score=21.29 Aligned_cols=23 Identities=30% Similarity=0.616 Sum_probs=17.8
Q ss_pred EEEEEEEeeeccceeeeeheeee
Q psy2991 34 TFRVLFVHTGPCISLVVEKEKFR 56 (71)
Q Consensus 34 ~FRVlFVhl~PC~sLVvLnil~~ 56 (71)
+|-.-|--.|.|.+|+...|.++
T Consensus 161 GfYLAFqd~GAC~aL~sVrVfYk 183 (187)
T 3etp_A 161 GFYLAFQDYGGCMSLIAVRVFYR 183 (187)
T ss_dssp EEEEEEEESSCCEEEEEEEEEEE
T ss_pred eEEEEEcCCCceEEEEEEEEEEe
Confidence 35566778999999998877654
No 5
>2qtd_A Uncharacterized protein MJ0327; ribonuclease H-like motif fold, iron-molybdenum cofactor, ST genomics; HET: MSE PG4; 1.70A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 2kla_A
Probab=13.15 E-value=82 Score=18.22 Aligned_cols=18 Identities=17% Similarity=0.409 Sum_probs=15.7
Q ss_pred eheeeeeeeeEEEeeecc
Q psy2991 51 EKEKFRWSSFFLLYDFET 68 (71)
Q Consensus 51 Lnil~~~~~~~~~~~~~~ 68 (71)
+|--|-....|++||.++
T Consensus 16 V~~hFG~a~~F~I~d~~~ 33 (105)
T 2qtd_A 16 ISNSFEDCKYFLIVRIDD 33 (105)
T ss_dssp BCSCTTTCSEEEEEEEET
T ss_pred cCccCccCCEEEEEEecC
Confidence 777889999999999875
No 6
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=12.63 E-value=1.5e+02 Score=22.56 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=18.9
Q ss_pred EEEEEEEeeeccceeeeeheeeee
Q psy2991 34 TFRVLFVHTGPCISLVVEKEKFRW 57 (71)
Q Consensus 34 ~FRVlFVhl~PC~sLVvLnil~~~ 57 (71)
+|..-|--.|.|++|+...|.++-
T Consensus 182 g~ylafqd~gac~~l~svrv~y~~ 205 (536)
T 3fl7_A 182 GFYLAFQDIGACVALLSVRVYYKK 205 (536)
T ss_dssp EEEEEEEESSCEEEEEEEEEEEEE
T ss_pred eEEEEeccCCceEEEEEEEEEEEe
Confidence 355567789999999999887753
No 7
>1tuw_A Tetracenomycin polyketide synthesis protein TCMI; dimeric ??? ferredoxin-like fold tetracenomycin C biosynthes unknown function; 1.90A {Streptomyces glaucescens} SCOP: d.58.4.8
Probab=12.48 E-value=55 Score=21.43 Aligned_cols=12 Identities=25% Similarity=0.570 Sum_probs=9.7
Q ss_pred EEEEEEEEEeee
Q psy2991 32 YYTFRVLFVHTG 43 (71)
Q Consensus 32 Yf~FRVlFVhl~ 43 (71)
=|.|+.|+|||+
T Consensus 42 LF~~~dlY~HLi 53 (109)
T 1tuw_A 42 LFRFHDLYMHLI 53 (109)
T ss_dssp EEEETTEEEEEE
T ss_pred EEEeCCEEEEEE
Confidence 477888999986
No 8
>1rdu_A Conserved hypothetical protein; atnos, candid, structural genomics, joint center for structu genomics, JCSG, protein structure initiative; NMR {Thermotoga maritima} SCOP: c.55.5.1
Probab=11.74 E-value=91 Score=18.20 Aligned_cols=19 Identities=26% Similarity=0.779 Sum_probs=15.8
Q ss_pred eeheeeeeeeeEEEeeecc
Q psy2991 50 VEKEKFRWSSFFLLYDFET 68 (71)
Q Consensus 50 vLnil~~~~~~~~~~~~~~ 68 (71)
.+|--|-...+|++||.++
T Consensus 16 ~V~~hFG~a~~F~I~d~~~ 34 (116)
T 1rdu_A 16 MVSDRFARAEYFIIYDTES 34 (116)
T ss_dssp BBCSCGGGCSEEEEEETTT
T ss_pred cccCccccCCEEEEEEcCC
Confidence 4577789999999999875
No 9
>2bba_A Ephrin type-B receptor 4; EPHB4, tumorigenesis, angiogenesis, peptide mimetics, signal protein, structural genomics, PSI-2; 1.65A {Homo sapiens} SCOP: b.18.1.4 PDB: 2hle_A
Probab=11.55 E-value=2.1e+02 Score=19.96 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=15.5
Q ss_pred EEEEEEeeeccceeeeeheee
Q psy2991 35 FRVLFVHTGPCISLVVEKEKF 55 (71)
Q Consensus 35 FRVlFVhl~PC~sLVvLnil~ 55 (71)
|..-|--.|.|.+|+.+.|.+
T Consensus 163 fYLAFqD~GAC~aL~sVrVyY 183 (185)
T 2bba_A 163 FYLAFQDQGACMALLSLHLFY 183 (185)
T ss_dssp EEEEEEEESCEEEEEEEEEEE
T ss_pred EEEEEccCCcEEEEEEEEEEE
Confidence 334566789999999887654
No 10
>2wo1_A Ephrin type-A receptor; glycoprotein, AXON guidance, vascular development, cell SURF receptor, transferase, cell signaling; 1.85A {Homo sapiens} PDB: 2wo2_A* 2wo3_A* 3ckh_A 3gxu_A 3nru_A
Probab=11.52 E-value=1.9e+02 Score=20.18 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=16.8
Q ss_pred EEEEEEeeeccceeeeeheeee
Q psy2991 35 FRVLFVHTGPCISLVVEKEKFR 56 (71)
Q Consensus 35 FRVlFVhl~PC~sLVvLnil~~ 56 (71)
|-.-|--.|.|.+|+.+.|.++
T Consensus 155 fYLAFqD~GAC~aL~sVrVyYk 176 (185)
T 2wo1_A 155 FYLAFQDVGACIALVSVRVFYK 176 (185)
T ss_dssp EEEEEEESSCEEEEEEEEEEEE
T ss_pred EEEEEccCCcEEEEEEEEEEEE
Confidence 4455678899999999887654
Done!