Query psy2991
Match_columns 71
No_of_seqs 17 out of 19
Neff 2.2
Searched_HMMs 13730
Date Fri Aug 16 22:43:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2991.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2991hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2bbaa1 b.18.1.4 (A:17-196) Ep 25.6 29 0.0021 22.7 3.2 22 35-56 158-179 (180)
2 d1shwb_ b.18.1.4 (B:) Ligand-b 22.2 35 0.0025 22.4 3.1 22 35-56 156-177 (181)
3 d1tuwa_ d.58.4.8 (A:) Tetracen 18.5 14 0.001 22.8 0.4 11 33-43 42-52 (106)
4 d3bypa1 d.52.9.1 (A:6-87) Puta 16.5 27 0.002 18.7 1.3 9 38-46 74-82 (82)
5 d1v54g_ f.23.2.1 (G:) Mitochon 10.6 9 0.00065 22.6 -2.2 14 42-55 24-37 (84)
6 d1z08a1 c.37.1.8 (A:17-183) Ra 9.9 75 0.0055 17.3 1.9 8 33-40 2-9 (167)
7 d2qtva2 b.2.8.1 (A:2-44,A:391- 9.1 37 0.0027 22.1 0.3 8 42-49 71-78 (176)
8 d1rdua_ c.55.5.1 (A:) Hypothet 8.9 64 0.0047 17.5 1.3 18 51-68 17-34 (116)
9 d2c35b1 b.40.4.5 (B:78-171) C- 8.7 89 0.0065 16.7 1.9 19 37-55 19-37 (94)
10 d1oede_ f.36.1.1 (E:) Acetylch 8.4 8.5 0.00062 23.7 -3.1 13 42-54 9-21 (260)
No 1
>d2bbaa1 b.18.1.4 (A:17-196) Ephrin type-B receptor 4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.64 E-value=29 Score=22.75 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=17.1
Q ss_pred EEEEEEeeeccceeeeeheeee
Q psy2991 35 FRVLFVHTGPCISLVVEKEKFR 56 (71)
Q Consensus 35 FRVlFVhl~PC~sLVvLnil~~ 56 (71)
|..-|--.|-|.||+..-|.++
T Consensus 158 fYLAFqD~GAC~aL~sVrVyYk 179 (180)
T d2bbaa1 158 FYLAFQDQGACMALLSLHLFYK 179 (180)
T ss_dssp EEEEEEEESCEEEEEEEEEEEE
T ss_pred EEEEEccCCceEEEEEEEEEEe
Confidence 4455678899999999887664
No 2
>d1shwb_ b.18.1.4 (B:) Ligand-binding domain of the ephb2 receptor tyrosine kinase {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.24 E-value=35 Score=22.38 Aligned_cols=22 Identities=32% Similarity=0.661 Sum_probs=17.5
Q ss_pred EEEEEEeeeccceeeeeheeee
Q psy2991 35 FRVLFVHTGPCISLVVEKEKFR 56 (71)
Q Consensus 35 FRVlFVhl~PC~sLVvLnil~~ 56 (71)
|..-|--.|-|.||+.+-|.++
T Consensus 156 fYLAFqD~GAC~aL~sVrVfYk 177 (181)
T d1shwb_ 156 FYLAFQDYGGCMSLIAVRVFYR 177 (181)
T ss_dssp EEEEEEESSBEEEEEEEEEEEE
T ss_pred EEEEEccCCceEEEEEEEEEEE
Confidence 4456778999999999888664
No 3
>d1tuwa_ d.58.4.8 (A:) Tetracenomycin polyketide synthesis protein TcmI {Streptomyces glaucescens [TaxId: 1907]}
Probab=18.54 E-value=14 Score=22.75 Aligned_cols=11 Identities=27% Similarity=0.621 Sum_probs=9.6
Q ss_pred EEEEEEEEeee
Q psy2991 33 YTFRVLFVHTG 43 (71)
Q Consensus 33 f~FRVlFVhl~ 43 (71)
|.||.|++||+
T Consensus 42 f~f~gLY~HL~ 52 (106)
T d1tuwa_ 42 FRFHDLYMHLI 52 (106)
T ss_dssp EEETTEEEEEE
T ss_pred EeeCCEEEEEE
Confidence 78899999986
No 4
>d3bypa1 d.52.9.1 (A:6-87) Putative Zinc transporter CzrB {Thermus thermophilus [TaxId: 274]}
Probab=16.48 E-value=27 Score=18.71 Aligned_cols=9 Identities=22% Similarity=0.187 Sum_probs=6.6
Q ss_pred EEEeeeccc
Q psy2991 38 LFVHTGPCI 46 (71)
Q Consensus 38 lFVhl~PC~ 46 (71)
+.||+=||+
T Consensus 74 v~vHveP~g 82 (82)
T d3bypa1 74 ATIHVEPEG 82 (82)
T ss_dssp EEEEEEECC
T ss_pred EEEEeCCCC
Confidence 568888885
No 5
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.56 E-value=9 Score=22.61 Aligned_cols=14 Identities=14% Similarity=0.211 Sum_probs=11.9
Q ss_pred eeccceeeeeheee
Q psy2991 42 TGPCISLVVEKEKF 55 (71)
Q Consensus 42 l~PC~sLVvLnil~ 55 (71)
.+||++|..+|..+
T Consensus 24 a~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 24 ALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 47999999999864
No 6
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.88 E-value=75 Score=17.34 Aligned_cols=8 Identities=38% Similarity=1.165 Sum_probs=3.6
Q ss_pred EEEEEEEE
Q psy2991 33 YTFRVLFV 40 (71)
Q Consensus 33 f~FRVlFV 40 (71)
|.|||++|
T Consensus 2 y~fKivlv 9 (167)
T d1z08a1 2 YSFKVVLL 9 (167)
T ss_dssp EEEEEEEE
T ss_pred ceEEEEEE
Confidence 34454443
No 7
>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=9.12 E-value=37 Score=22.09 Aligned_cols=8 Identities=13% Similarity=0.202 Sum_probs=6.8
Q ss_pred eeccceee
Q psy2991 42 TGPCISLV 49 (71)
Q Consensus 42 l~PC~sLV 49 (71)
+|||+||-
T Consensus 71 IGpc~Sl~ 78 (176)
T d2qtva2 71 IGHASAVK 78 (176)
T ss_dssp ESSCEECC
T ss_pred eeccccCC
Confidence 79999993
No 8
>d1rdua_ c.55.5.1 (A:) Hypothetical protein TM1290 {Thermotoga maritima [TaxId: 2336]}
Probab=8.88 E-value=64 Score=17.52 Aligned_cols=18 Identities=28% Similarity=0.792 Sum_probs=14.4
Q ss_pred eheeeeeeeeEEEeeecc
Q psy2991 51 EKEKFRWSSFFLLYDFET 68 (71)
Q Consensus 51 Lnil~~~~~~~~~~~~~~ 68 (71)
++--|-...+|++||.++
T Consensus 17 v~~HFG~A~~F~I~d~~~ 34 (116)
T d1rdua_ 17 VSDRFARAEYFIIYDTES 34 (116)
T ss_dssp BCSCGGGCSEEEEEETTT
T ss_pred cccccCCCCEEEEEEecC
Confidence 555688899999999765
No 9
>d2c35b1 b.40.4.5 (B:78-171) C-terminal domain of RNA polymerase II subunit RBP7 (RpoE) {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.74 E-value=89 Score=16.67 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=15.0
Q ss_pred EEEEeeeccceeeeeheee
Q psy2991 37 VLFVHTGPCISLVVEKEKF 55 (71)
Q Consensus 37 VlFVhl~PC~sLVvLnil~ 55 (71)
++||.++|+-.++-.+-+.
T Consensus 19 G~fv~lg~~~~~v~~~~l~ 37 (94)
T d2c35b1 19 GLFTEIGPMSCFISRHSIP 37 (94)
T ss_dssp EEEEEETTEEEEEEGGGSC
T ss_pred EEEEEecCceEEEEhhhcC
Confidence 5799999998887776654
No 10
>d1oede_ f.36.1.1 (E:) Acetylcholine receptor protein, gamma chain {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}
Probab=8.44 E-value=8.5 Score=23.68 Aligned_cols=13 Identities=15% Similarity=0.317 Sum_probs=10.5
Q ss_pred eeccceeeeehee
Q psy2991 42 TGPCISLVVEKEK 54 (71)
Q Consensus 42 l~PC~sLVvLnil 54 (71)
.+||+.+++|.++
T Consensus 9 ilP~~li~~ls~~ 21 (260)
T d1oede_ 9 IAPCVLISSLVVL 21 (260)
T ss_dssp HTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4799999998754
Done!