RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2991
         (71 letters)



>gnl|CDD|173007 PRK14541, PRK14541, nucleoside diphosphate kinase; Provisional.
          Length = 140

 Score = 26.4 bits (58), Expect = 0.96
 Identities = 9/22 (40%), Positives = 16/22 (72%)

Query: 32 YYTFRVLFVHTGPCISLVVEKE 53
          +Y   V F+ +GPC+ +++EKE
Sbjct: 57 FYGELVEFMSSGPCVPMILEKE 78


>gnl|CDD|240247 PTZ00055, PTZ00055, glutathione synthetase; Provisional.
          Length = 619

 Score = 26.7 bits (59), Expect = 0.97
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 24  SVDFYFTAYYTFRVLFVHTGPCISLVVEKEKFRWSSFFLLYDFET 68
             D Y TA   F    +H    +++      +     FL Y +ET
Sbjct: 301 FFDKYKTANELFDKYGIHV-KTLTINELILLYEKKKLFLNYPWET 344


>gnl|CDD|179673 PRK03910, PRK03910, D-cysteine desulfhydrase; Validated.
          Length = 331

 Score = 25.6 bits (57), Expect = 1.9
 Identities = 6/8 (75%), Positives = 7/8 (87%)

Query: 36  RVLFVHTG 43
            VLF+HTG
Sbjct: 310 NVLFIHTG 317


>gnl|CDD|147993 pfam06126, Herpes_LAMP2, Herpesvirus Latent membrane protein 2.
           Family of Kaposi's sarcoma-associated herpesvirus (HHV8)
           latent membrane protein.
          Length = 510

 Score = 25.4 bits (55), Expect = 2.9
 Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 5/34 (14%)

Query: 21  TWLSVDFYFTAYYTFRVLFVH-----TGPCISLV 49
            W    F+F   +   + F+H      G CI L 
Sbjct: 150 NWQHCQFFFPISFLLLLFFIHAFATDKGGCIKLA 183


>gnl|CDD|183145 PRK11462, PRK11462, putative transporter; Provisional.
          Length = 460

 Score = 24.5 bits (53), Expect = 5.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 27 FYFTAYYTFRVLFVHTGPCISLVVEKEKFRWSSF 60
          F  T +   R L   + PC+ L+ ++ + RW  F
Sbjct: 46 FVGTMFLVARALDAISDPCMGLLADRTRSRWGKF 79


>gnl|CDD|233663 TIGR01974, NDH_I_L, proton-translocating NADH-quinone
           oxidoreductase, chain L.  This model describes the 12th
           (based on E. coli) structural gene, L, of bacterial NADH
           dehydrogenase I, as well as chain 5 of the corresponding
           mitochondrial complex I and subunit 5 (or F) of the
           chloroplast NAD(P)H-plastoquinone dehydrogenase complex
           [Energy metabolism, Electron transport].
          Length = 609

 Score = 24.5 bits (54), Expect = 5.6
 Identities = 6/12 (50%), Positives = 11/12 (91%)

Query: 29  FTAYYTFRVLFV 40
            TA+Y+FR++F+
Sbjct: 421 LTAFYSFRLIFM 432


>gnl|CDD|163447 TIGR03735, PRTRC_A, PRTRC system protein A.  A novel genetic system
           characterized by six major proteins, included a ParB
           homolog and a ThiF homolog, is designated PRTRC, or
           ParB-Related,ThiF-Related Cassette. It is often found on
           plasmids. This protein family is designated protein A.
          Length = 192

 Score = 24.2 bits (53), Expect = 6.9
 Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 1/18 (5%)

Query: 10  KELLP-EHAAWVTWLSVD 26
           +  LP E AAW+ W S  
Sbjct: 88  RAALPNEVAAWIVWNSET 105


>gnl|CDD|235836 PRK06590, PRK06590, NADH:ubiquinone oxidoreductase subunit L;
           Reviewed.
          Length = 624

 Score = 24.0 bits (53), Expect = 9.5
 Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 2/21 (9%)

Query: 19  WVTWLSVDFYFTAYYTFRVLF 39
               +    + TA+Y+FR++F
Sbjct: 416 VAGLVGA--FLTAFYSFRLIF 434


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.325    0.138    0.458 

Gapped
Lambda     K      H
   0.267   0.0736    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,757,557
Number of extensions: 271251
Number of successful extensions: 252
Number of sequences better than 10.0: 1
Number of HSP's gapped: 252
Number of HSP's successfully gapped: 14
Length of query: 71
Length of database: 10,937,602
Length adjustment: 41
Effective length of query: 30
Effective length of database: 9,119,088
Effective search space: 273572640
Effective search space used: 273572640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.2 bits)