RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2991
(71 letters)
>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic,
lyase, membrane, transmembrane; 2.55A {Chlamydomonas
reinhardtii} PDB: 3et6_B
Length = 190
Score = 26.9 bits (60), Expect = 0.39
Identities = 7/21 (33%), Positives = 14/21 (66%)
Query: 40 VHTGPCISLVVEKEKFRWSSF 60
+H+GP ++ VV ++ R+ F
Sbjct: 108 MHSGPVVAGVVGRKMPRFXLF 128
>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics,
PSI, protein structure initiative; 2.70A {Mycobacterium
tuberculosis}
Length = 204
Score = 26.0 bits (58), Expect = 0.76
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 40 VHTGPCISLVVEKEKFRW 57
+ TGP ++ VV +FR+
Sbjct: 108 LATGPVVAGVVGSRRFRY 125
>2qtq_A Transcriptional regulator, TETR family; transcription regulator,
DNA/RNA-binding 3-helical bundle FO turn helix motif,
HTH motif; HET: MSE; 1.85A {Novosphingobium
aromaticivorans} PDB: 2rha_A*
Length = 213
Score = 26.1 bits (58), Expect = 0.90
Identities = 5/26 (19%), Positives = 11/26 (42%)
Query: 14 PEHAAWVTWLSVDFYFTAYYTFRVLF 39
P+ + + D +F+A + F
Sbjct: 160 PQLFYFTVTGAADRFFSARLVLKHCF 185
>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural
genomics, structural genomics conso SGC, CGMP
biosynthesis; 2.08A {Homo sapiens}
Length = 225
Score = 25.3 bits (56), Expect = 1.4
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 40 VHTGPCISLVVEKEKFRW 57
+H+G + VV + R+
Sbjct: 112 LHSGSVFAGVVGVKMPRY 129
>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1,
metal-binding, CGMP biosynthesis, nucleotide-B cyclase,
GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B
Length = 219
Score = 25.4 bits (56), Expect = 1.6
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 40 VHTGPCISLVVEKEKFRW 57
+HTG ++ V+ + R+
Sbjct: 116 IHTGEVVTGVIGQRMPRY 133
>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A*
1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A*
3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A*
1tl7_A*
Length = 220
Score = 25.3 bits (56), Expect = 1.8
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 3/22 (13%)
Query: 40 VHTGPCISLVVEKEKFR---WS 58
+H+G V+ K++ WS
Sbjct: 132 IHSGRVHCGVLGLRKWQFDVWS 153
>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or
tryptophan synthase BET like family, PLP dependent
enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium}
PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A*
4d8u_A* 4d8t_A* 4d92_A* 4d99_A*
Length = 342
Score = 25.0 bits (54), Expect = 2.5
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 36 RVLFVHTG 43
+LF+HTG
Sbjct: 323 PILFIHTG 330
>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open
twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis
saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*
Length = 341
Score = 25.0 bits (54), Expect = 2.5
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 36 RVLFVHTG 43
VL+VH G
Sbjct: 317 NVLYVHLG 324
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 24.8 bits (54), Expect = 2.6
Identities = 5/8 (62%), Positives = 6/8 (75%)
Query: 36 RVLFVHTG 43
RVL+ H G
Sbjct: 316 RVLYAHLG 323
>3rko_L NADH-quinone oxidoreductase subunit L; complex I, proton pump,
membrane protein, Na ubiquinone, cytoplasmic membrane;
HET: LFA CA7; 3.00A {Escherichia coli}
Length = 613
Score = 24.6 bits (54), Expect = 2.8
Identities = 6/24 (25%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 17 AAWVTWLSVDFYFTAYYTFRVLFV 40
+ + T+ YTFR++F+
Sbjct: 414 LMVAGLVGA--FMTSLYTFRMIFI 435
>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase;
HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1
PDB: 1j0b_A*
Length = 325
Score = 24.6 bits (53), Expect = 3.7
Identities = 5/8 (62%), Positives = 8/8 (100%)
Query: 36 RVLFVHTG 43
++LF+HTG
Sbjct: 302 KILFIHTG 309
>1pp0_A Volvatoxin A2; ingot crystal form; 1.42A {Volvariella volvacea}
SCOP: d.103.1.1 PDB: 1pp6_A 1vgf_A 1vcy_A
Length = 199
Score = 24.0 bits (51), Expect = 4.7
Identities = 6/35 (17%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 5 NLNDKKELLPEHAAWVTWLSVDFYFTAYYTFRVLF 39
NL ++ + ++ + + + + + +RVLF
Sbjct: 109 NLEEESS-----SGFLQFNTNNVKKNSSWEYRVLF 138
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP,
antiretroviral, HIV capsid, ligase; 1.55A {Macaca
mulatta}
Length = 186
Score = 23.4 bits (51), Expect = 7.0
Identities = 7/51 (13%), Positives = 15/51 (29%)
Query: 2 ESGNLNDKKELLPEHAAWVTWLSVDFYFTAYYTFRVLFVHTGPCISLVVEK 52
N+ + P++ WV L ++ + + L V
Sbjct: 76 AMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVII 126
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 23.9 bits (51), Expect = 7.2
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 10/39 (25%)
Query: 17 AAWVTWLSVDFYFTAYYTFRVLFVHTG-------PCISL 48
A +W S F+ + VLF G P SL
Sbjct: 284 AETDSWES--FFVSVRKAITVLF-FIGVRCYEAYPNTSL 319
Score = 23.5 bits (50), Expect = 9.0
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 5/21 (23%)
Query: 39 FVHTGPCISLV-----VEKEK 54
V +GP SL + K K
Sbjct: 377 LVVSGPPQSLYGLNLTLRKAK 397
Score = 23.5 bits (50), Expect = 9.2
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 22 WLSVDFYFTAYYTFRVL-FVHTGPCISLVV 50
W D +F Y F +L V P ++L +
Sbjct: 1646 WNRADNHFKDTYGFSILDIVINNP-VNLTI 1674
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.138 0.458
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,131,975
Number of extensions: 49417
Number of successful extensions: 101
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 18
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (23.9 bits)