BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy2993
         (87 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B3CMC1|TRUA_WOLPP tRNA pseudouridine synthase A OS=Wolbachia pipientis subsp. Culex
           pipiens (strain wPip) GN=truA PE=3 SV=1
          Length = 245

 Score = 35.0 bits (79), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 15  IAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAW--------NIMNENGP 66
           I VL A A+ D F   F A   +Y Y   N Y P + +   Y W        NIM E   
Sbjct: 88  IVVLSAEAVDDAFHARFSAKKRYYEYRIINRYAP-AALEIGYVWQVFNPLDVNIMREAAR 146

Query: 67  HCLD--NIDSHRST 78
           H L   N+ S RS 
Sbjct: 147 HLLGKHNLSSFRSK 160


>sp|C0R4F9|TRUA_WOLWR tRNA pseudouridine synthase A OS=Wolbachia sp. subsp. Drosophila
           simulans (strain wRi) GN=truA PE=3 SV=1
          Length = 245

 Score = 33.5 bits (75), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 15  IAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAW--------NIMNENGP 66
           I VL A  + D F   F A   +Y Y   N Y P + +   Y W        NIM E   
Sbjct: 88  IVVLNAEVVDDAFHARFSAKKRYYEYRIVNRYAP-AALETGYVWQVFSPLDVNIMREAAK 146

Query: 67  HCLDNID 73
           H L   D
Sbjct: 147 HLLGKHD 153


>sp|Q73G93|TRUA_WOLPM tRNA pseudouridine synthase A OS=Wolbachia pipientis wMel GN=truA
           PE=3 SV=1
          Length = 245

 Score = 33.5 bits (75), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 9/67 (13%)

Query: 15  IAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAW--------NIMNENGP 66
           I VL A  + D F   F A   +Y Y   N Y P + +   Y W        NIM E   
Sbjct: 88  IVVLNAEVVDDAFHARFSAKKRYYEYRIVNRYAP-AALETGYVWQVFSPLDVNIMREAAK 146

Query: 67  HCLDNID 73
           H L   D
Sbjct: 147 HLLGKHD 153


>sp|C3LTP7|TRUA_VIBCM tRNA pseudouridine synthase A OS=Vibrio cholerae serotype O1
           (strain M66-2) GN=truA PE=3 SV=1
          Length = 264

 Score = 30.0 bits (66), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 10  NEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNH-YKP 48
           N P  IAV  AMA+ D F   F A    Y Y   NH Y+P
Sbjct: 81  NLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRP 120


>sp|Q9KTA4|TRUA_VIBCH tRNA pseudouridine synthase A OS=Vibrio cholerae serotype O1
           (strain ATCC 39315 / El Tor Inaba N16961) GN=truA PE=3
           SV=1
          Length = 264

 Score = 30.0 bits (66), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 10  NEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNH-YKP 48
           N P  IAV  AMA+ D F   F A    Y Y   NH Y+P
Sbjct: 81  NLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRP 120


>sp|A5F2T4|TRUA_VIBC3 tRNA pseudouridine synthase A OS=Vibrio cholerae serotype O1
           (strain ATCC 39541 / Ogawa 395 / O395) GN=truA PE=3 SV=1
          Length = 264

 Score = 30.0 bits (66), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/40 (45%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 10  NEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNH-YKP 48
           N P  IAV  AMA+ D F   F A    Y Y   NH Y+P
Sbjct: 81  NLPKDIAVRWAMAVPDEFHARFSATARRYRYVIYNHVYRP 120


>sp|Q93084|AT2A3_HUMAN Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Homo sapiens
           GN=ATP2A3 PE=1 SV=2
          Length = 1043

 Score = 29.6 bits (65), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 35  WLFYMYTFGNHYKPLSPVAACYAWNIMNENGPH 67
           WLF+ Y     Y  L+ VAA   W + +  GPH
Sbjct: 832 WLFFRYLAIGVYVGLATVAAATWWFVYDAEGPH 864


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.137    0.463 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,969,667
Number of Sequences: 539616
Number of extensions: 1227988
Number of successful extensions: 2642
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2640
Number of HSP's gapped (non-prelim): 8
length of query: 87
length of database: 191,569,459
effective HSP length: 57
effective length of query: 30
effective length of database: 160,811,347
effective search space: 4824340410
effective search space used: 4824340410
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)