Query psy2993
Match_columns 87
No_of_seqs 92 out of 103
Neff 4.1
Searched_HMMs 46136
Date Fri Aug 16 22:44:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA03234 DNA packaging protein 98.7 2.2E-08 4.8E-13 77.3 6.2 51 7-62 62-112 (338)
2 KOG4219|consensus 98.7 9.1E-09 2E-13 84.3 3.9 53 5-60 61-113 (423)
3 KOG4220|consensus 98.4 1.9E-07 4.1E-12 77.7 3.1 58 7-67 58-115 (503)
4 PF00001 7tm_1: 7 transmembran 98.3 2.4E-06 5.2E-11 57.7 6.7 54 6-62 11-64 (257)
5 PF10324 7TM_GPCR_Srw: Serpent 98.3 1.5E-06 3.2E-11 64.7 6.1 70 5-74 21-93 (318)
6 PHA02638 CC chemokine receptor 98.0 1.3E-05 2.7E-10 63.9 6.0 64 7-75 125-194 (417)
7 PHA02834 chemokine receptor-li 98.0 1.9E-05 4.1E-10 59.8 5.6 48 7-60 56-103 (323)
8 PHA03087 G protein-coupled che 97.3 0.00088 1.9E-08 50.0 6.7 51 7-61 67-117 (335)
9 PHA03235 DNA packaging protein 97.3 0.00028 6.1E-09 56.3 4.3 45 11-61 66-111 (409)
10 PF10320 7TM_GPCR_Srsx: Serpen 93.8 0.15 3.3E-06 37.9 5.1 51 5-60 16-66 (257)
11 PF03402 V1R: Vomeronasal orga 82.9 1.3 2.9E-05 34.4 3.0 48 12-64 9-57 (265)
12 PF05462 Dicty_CAR: Slime mold 75.5 6 0.00013 31.0 4.6 28 7-34 34-61 (303)
13 PF11710 Git3: G protein-coupl 69.3 16 0.00035 26.7 5.4 52 8-62 30-81 (201)
14 PF10328 7TM_GPCR_Srx: Serpent 62.3 43 0.00094 24.6 6.5 30 7-36 21-50 (274)
15 PF10323 7TM_GPCR_Srv: Serpent 42.2 31 0.00068 26.0 3.1 27 8-34 27-53 (283)
16 KOG2087|consensus 41.7 18 0.00039 29.9 1.8 25 7-31 52-76 (363)
17 PF05296 TAS2R: Mammalian tast 34.5 1.2E+02 0.0026 23.3 5.3 29 10-38 40-68 (303)
18 PF00002 7tm_2: 7 transmembran 33.1 14 0.00031 26.2 0.0 29 5-33 26-54 (242)
19 PF10321 7TM_GPCR_Srt: Serpent 22.4 94 0.002 24.5 2.8 27 6-32 59-85 (313)
20 PF04565 RNA_pol_Rpb2_3: RNA p 22.2 40 0.00087 20.9 0.6 13 75-87 37-50 (68)
No 1
>PHA03234 DNA packaging protein UL33; Provisional
Probab=98.74 E-value=2.2e-08 Score=77.28 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=39.6
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q psy2993 7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMN 62 (87)
Q Consensus 7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h 62 (87)
+++|||+||++++|||+||+++++...|+..+ . ...|++|+ ..||.+.++.
T Consensus 62 ~~~~rt~tn~fi~NLAvaDLL~~l~lp~~~~~-~---~~~w~fG~-~lCk~~~~~~ 112 (338)
T PHA03234 62 KVAKHNATSFYLITLFASDFLHMLCVFFLTLN-R---EALFNFNQ-AFCQCVLFIY 112 (338)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHH-H---hCCccCch-hHHHHHHHHH
Confidence 46789999999999999999998765444333 2 23589997 9999988833
No 2
>KOG4219|consensus
Probab=98.73 E-value=9.1e-09 Score=84.33 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=46.4
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHH
Q psy2993 5 LPLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI 60 (87)
Q Consensus 5 ~~~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~ 60 (87)
+.-|+|||.|||+|+|||+||++.++|..|+.+-+..+ ..|.+|. .+|+..++
T Consensus 61 l~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal~--~~W~~G~-f~C~f~nf 113 (423)
T KOG4219|consen 61 LAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYALH--QEWYFGS-FYCRFVNF 113 (423)
T ss_pred eehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--hcccccc-ceeeeccc
Confidence 46799999999999999999999999999988774433 5799997 89999988
No 3
>KOG4220|consensus
Probab=98.40 E-value=1.9e-07 Score=77.72 Aligned_cols=58 Identities=21% Similarity=0.338 Sum_probs=50.2
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHHhhhhh
Q psy2993 7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGPH 67 (87)
Q Consensus 7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~vf~~ 67 (87)
-|+++|.-||||++||+||++++.+.||.+.. |+..+ +|++|+ ..|..|..+.-+-++
T Consensus 58 nrqLqTVnNYfLfSLAcADliIG~~SMnl~t~-Y~lmg-~W~LG~-~~CdlWLalDYvaSN 115 (503)
T KOG4220|consen 58 NRQLQTVNNYFLFSLACADLIIGAFSMNLYTT-YTLMG-YWPLGP-LVCDLWLALDYVASN 115 (503)
T ss_pred cceeeeecceeehHHHHhhhhhheeechHHHH-HHHHc-ccccch-HHHHHHHHHHHHhhh
Confidence 47889999999999999999999999999998 77655 699998 999999886655443
No 4
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=98.33 E-value=2.4e-06 Score=57.69 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=42.6
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q psy2993 6 PLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMN 62 (87)
Q Consensus 6 ~~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h 62 (87)
.+|++|+++|++++|||++|+++.+...|..+.... . ..|..+. ..|+.+.++.
T Consensus 11 ~~~~~~~~~~~~l~~Lav~Dll~~~~~~~~~~~~~~-~-~~~~~~~-~~C~~~~~~~ 64 (257)
T PF00001_consen 11 RSKRLRTPSNILLLNLAVADLLVGLFCIPFYIYSLL-F-DDWIFSS-FLCRIFGFLF 64 (257)
T ss_dssp HSGGG-SHHHHHHHHHHHHHHHHHHTHHHHHHHHHH-H-SSCTSHH-HHHHHHHHHH
T ss_pred hhccCCChhHHHHHHHHHHHHhhccccccccccccc-c-ccccccc-cccccccccc
Confidence 357889999999999999999999999998887333 2 4566665 8999887743
No 5
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=98.32 E-value=1.5e-06 Score=64.74 Aligned_cols=70 Identities=14% Similarity=0.251 Sum_probs=48.9
Q ss_pred CCCcccch-hHHHHHHHHHHHHHHHHhhhhhHHHHHHHHh-cCCCCCCchh-HHHHHHHHHhhhhhhhhhhcc
Q psy2993 5 LPLTRNEP-STIAVLMAMALSDMFTLLFPAPWLFYMYTFG-NHYKPLSPVA-ACYAWNIMNENGPHCLDNIDS 74 (87)
Q Consensus 5 ~~~~~MrT-ptN~~L~nmAvaDllv~l~~~P~~i~~~~~g-~~~~~~g~~~-~Cy~~~~~h~vf~~~~HtiS~ 74 (87)
|++|+||| |+|.+++++|++|++.++..++..+..+... +.++-.++.. ......++.+.++.++|++|.
T Consensus 21 Ltrk~mR~~~in~~l~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~~S~ 93 (318)
T PF10324_consen 21 LTRKSMRSSSINILLIGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFRRISI 93 (318)
T ss_pred cCChhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999997 9999999999999999999999988634322 1222122211 222233377888888888774
No 6
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=98.02 E-value=1.3e-05 Score=63.86 Aligned_cols=64 Identities=17% Similarity=0.219 Sum_probs=47.1
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHH------HHhhhhhhhhhhccC
Q psy2993 7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI------MNENGPHCLDNIDSH 75 (87)
Q Consensus 7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~------~h~vf~~~~HtiS~~ 75 (87)
+|++|+++|++++|||+||++.. +.+|+.++ +.. ..|.+|. ..||.... .-.++--+++++.|.
T Consensus 125 ~k~lrt~t~i~llnLAisDLl~~-l~lPf~i~-~~~--~~W~fg~-~~Ck~~~~l~~~~~~~Si~~L~~isiDRY 194 (417)
T PHA02638 125 CKKIKTITDIYIFNLAISDLIFV-IDFPFIIY-NEF--DQWIFGD-FMCKVISASYYIGFFSNMFLITLMSIDRY 194 (417)
T ss_pred hccCCCHhHHHHHHHHHHHHHHH-HHHHHHHH-HHh--ccccccc-cchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47889999999999999999874 46797776 332 3688885 88988654 445566666766653
No 7
>PHA02834 chemokine receptor-like protein; Provisional
Probab=97.95 E-value=1.9e-05 Score=59.77 Aligned_cols=48 Identities=17% Similarity=0.127 Sum_probs=36.2
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHH
Q psy2993 7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI 60 (87)
Q Consensus 7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~ 60 (87)
++++ +++|++++|||+||+++ ++.+|..++ ... + .|.+|+ ..|+...+
T Consensus 56 ~~~~-~~~n~~i~nLAiaDll~-~~~lP~~i~-~~~-~-~w~~g~-~~C~~~~~ 103 (323)
T PHA02834 56 KRFM-FVVDVYLFNIAMSDLML-VFSFPFIIH-NDL-N-EWIFGE-FMCKLVLG 103 (323)
T ss_pred cccc-chhhhhhHHHHHHHHHH-HHHHHHHHH-HHc-C-CcCCcc-hHHHhHHH
Confidence 3444 46899999999999986 567898776 332 2 588886 89998765
No 8
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=97.33 E-value=0.00088 Score=50.02 Aligned_cols=51 Identities=20% Similarity=0.293 Sum_probs=37.3
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHH
Q psy2993 7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIM 61 (87)
Q Consensus 7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~ 61 (87)
++++|+|+|+++.|||+||++..+. +|..++... ...|.+++ ..|+...++
T Consensus 67 ~~~~~~~~~~ll~~laisDll~~~~-~~~~~~~~~--~~~~~~~~-~~C~~~~~~ 117 (335)
T PHA03087 67 KTKIKTPMDIYLLNLAVSDLLFVMT-LPFQIYYYI--LFQWSFGE-FACKIVSGL 117 (335)
T ss_pred hccccCchHHHHHHHHHHHHHHHHh-HHHHHHHHh--CCCCCCCc-HHHHHHHHH
Confidence 3478899999999999999987665 676654222 23466675 889877773
No 9
>PHA03235 DNA packaging protein UL33; Provisional
Probab=97.33 E-value=0.00028 Score=56.25 Aligned_cols=45 Identities=22% Similarity=0.400 Sum_probs=31.9
Q ss_pred chhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCC-chhHHHHHHHH
Q psy2993 11 EPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLS-PVAACYAWNIM 61 (87)
Q Consensus 11 rTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g-~~~~Cy~~~~~ 61 (87)
++++|++++|||+||+++ ++.+|+.+.. + .|.++ .+..|+.+.++
T Consensus 66 ~~~~~~~I~NLAvsDLl~-l~~lP~~i~~----~-~~~~~~g~~~Ck~~~~l 111 (409)
T PHA03235 66 FSTPTLYMTNLYLANLLT-VFVLPFIMLS----N-QGLLSGSVAGCKFASLL 111 (409)
T ss_pred CCccHHHHHHHHHHHHHH-HHHHHHHHHh----c-CccccCCCCeehhHHHH
Confidence 467789999999999987 5678977652 1 24332 13789888773
No 10
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=93.84 E-value=0.15 Score=37.90 Aligned_cols=51 Identities=14% Similarity=0.374 Sum_probs=38.2
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHH
Q psy2993 5 LPLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNI 60 (87)
Q Consensus 5 ~~~~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~ 60 (87)
...|++|||.++++..+|++|++..+..+|..+.. +++. . .....|+...+
T Consensus 16 ~~~~~Lrs~~~~li~~~~~~d~~~~~~~~~~~~~~--~~~~--~-i~~~~Cf~~~~ 66 (257)
T PF10320_consen 16 FRNKSLRSPCYILICILCFADLICLLGTLPFMLFL--FRDH--Q-ITRSECFWQIF 66 (257)
T ss_pred HhccccccchHHHHHHHHHHHHHHHhhHHHHHHHH--Hhhe--e-ccHHHHHHHHH
Confidence 45789999999999999999999999988888752 2222 1 22357876544
No 11
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ]. Pheromones have evolved in all animal phyla, to signal sex and dominance status, and are responsible for stereotypical social and sexual behaviour among members of the same species. In mammals, these chemical signals are believed to be detected primarily by the vomeronasal organ (VNO), a chemosensory organ located at the base of the nasal septum []. The VNO is present in most amphibia, reptiles and non-primate mammals but is absent in birds, adult catarrhine monkeys and apes []. An active role for the human VNO in the detection of pheromones is disputed; the VNO is clearly present in the foetus but appears to be atrophied or absent in adults. Three distinct families of putative pheromone receptors have been identified in the vomeronasal organ (V1Rs, V2Rs and V3Rs). All are G protein-coupled receptors but are only distantly related to the receptors of the main olfactory system, highlighting their different role []. The V1 receptors share between 50 and 90% sequence identity but have little similarity to other families of G protein-coupled receptors. They appear to be distantly related to the mammalian T2R bitter taste receptors and the rhodopsin-like GPCRs []. In rat, the family comprises 30-40 genes. These are expressed in the apical regions of the VNO, in neurons expressing Gi2. Coupling of the receptors to this protein mediates inositol trisphosphate signalling []. A number of human V1 receptor homologues have also been found. The majority of these human sequences are pseudogenes [] but an apparently functional receptor has been identified that is expressed in the human olfactory system [].; GO: 0016503 pheromone receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane
Probab=82.91 E-value=1.3 Score=34.38 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhcCCCCCCchhHHHHHHHHHhh
Q psy2993 12 PSTIAVLMAMALSDMFTLLF-PAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEN 64 (87)
Q Consensus 12 TptN~~L~nmAvaDllv~l~-~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h~v 64 (87)
.|++.+|..||+|+.++.++ ++|........ +.++ +..||...|.|-+
T Consensus 9 kp~dlIl~hLa~aN~lvLl~rGip~~~~~~~~----~~~~-d~gCK~v~Y~~RV 57 (265)
T PF03402_consen 9 KPIDLILIHLALANILVLLSRGIPQTMAFFGW----KFFD-DIGCKIVFYIYRV 57 (265)
T ss_pred CcHHHHHHHHHHHHHHHHHHhhHHHHHHHhhc----ccCC-CceeeeeeeehHH
Confidence 59999999999999999887 78865442221 1233 4678777664443
No 12
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=75.48 E-value=6 Score=31.04 Aligned_cols=28 Identities=7% Similarity=0.179 Sum_probs=23.8
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhhhhh
Q psy2993 7 LTRNEPSTIAVLMAMALSDMFTLLFPAP 34 (87)
Q Consensus 7 ~~~MrTptN~~L~nmAvaDllv~l~~~P 34 (87)
.|+.|+|.|.++.-++++|++..+..+.
T Consensus 34 ~k~~r~~~~rli~yl~~~~ll~~v~~~~ 61 (303)
T PF05462_consen 34 FKRLRKPINRLIFYLSIANLLTNVASMI 61 (303)
T ss_pred HHHhCccHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999998776543
No 13
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This is the conserved N-terminal domain of the member proteins.
Probab=69.28 E-value=16 Score=26.74 Aligned_cols=52 Identities=13% Similarity=0.104 Sum_probs=34.3
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCchhHHHHHHHHH
Q psy2993 8 TRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMN 62 (87)
Q Consensus 8 ~~MrTptN~~L~nmAvaDllv~l~~~P~~i~~~~~g~~~~~~g~~~~Cy~~~~~h 62 (87)
++.|+--+.++.||.+||++-++-.+...+. ..-. .....+...|.+..|+-
T Consensus 30 ~r~~~fR~~LIl~L~~aD~~qal~~~i~~~~-~l~~--~~i~~~s~~C~aqGf~~ 81 (201)
T PF11710_consen 30 YRRRSFRHQLILNLLLADFIQALAFLISPIR-WLAR--GGIIAPSPFCQAQGFFL 81 (201)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhc--CCeeCCCCchhhhHHHH
Confidence 4556667789999999999999887664443 2211 12223347898887743
No 14
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=62.27 E-value=43 Score=24.60 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=25.5
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhhhhhHH
Q psy2993 7 LTRNEPSTIAVLMAMALSDMFTLLFPAPWL 36 (87)
Q Consensus 7 ~~~MrTptN~~L~nmAvaDllv~l~~~P~~ 36 (87)
.+++|++.+.+-.+-|++|+++.+.+.=|.
T Consensus 21 ~~~~~~sF~~l~~~~a~~n~i~~~~~l~~~ 50 (274)
T PF10328_consen 21 LKSLRNSFGILCASQAIANIIICLIFLFWV 50 (274)
T ss_pred cccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999988765443
No 15
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=42.24 E-value=31 Score=26.04 Aligned_cols=27 Identities=15% Similarity=0.317 Sum_probs=23.8
Q ss_pred cccchhHHHHHHHHHHHHHHHHhhhhh
Q psy2993 8 TRNEPSTIAVLMAMALSDMFTLLFPAP 34 (87)
Q Consensus 8 ~~MrTptN~~L~nmAvaDllv~l~~~P 34 (87)
+..+||...++++-++||++.++++.-
T Consensus 27 ~~~~~~Fy~l~~~~~iaDi~~~~~~~~ 53 (283)
T PF10323_consen 27 KTFKSTFYTLLIQHCIADILSMLFYFL 53 (283)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 348899999999999999999998754
No 16
>KOG2087|consensus
Probab=41.67 E-value=18 Score=29.88 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=19.9
Q ss_pred CcccchhHHHHHHHHHHHHHHHHhh
Q psy2993 7 LTRNEPSTIAVLMAMALSDMFTLLF 31 (87)
Q Consensus 7 ~~~MrTptN~~L~nmAvaDllv~l~ 31 (87)
.+.+.++--+++.|||+||++..+-
T Consensus 52 ~~~~~~~~~~li~~la~ad~~mGiY 76 (363)
T KOG2087|consen 52 SRYELNSHRFLICNLAFADLLMGIY 76 (363)
T ss_pred hhhhccchHHHHHHHHHHHHHcchH
Confidence 3455668889999999999998654
No 17
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=34.49 E-value=1.2e+02 Score=23.25 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=22.4
Q ss_pred cchhHHHHHHHHHHHHHHHHhhhhhHHHH
Q psy2993 10 NEPSTIAVLMAMALSDMFTLLFPAPWLFY 38 (87)
Q Consensus 10 MrTptN~~L~nmAvaDllv~l~~~P~~i~ 38 (87)
.-.|.+.+|++||++.++...+.+-..+.
T Consensus 40 ~l~~~d~IL~~La~sr~~l~~~~~~~~~~ 68 (303)
T PF05296_consen 40 KLSPSDQILTSLAISRILLQWVILLNSFL 68 (303)
T ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33699999999999999987765544444
No 18
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=33.09 E-value=14 Score=26.22 Aligned_cols=29 Identities=14% Similarity=0.067 Sum_probs=0.0
Q ss_pred CCCcccchhHHHHHHHHHHHHHHHHhhhh
Q psy2993 5 LPLTRNEPSTIAVLMAMALSDMFTLLFPA 33 (87)
Q Consensus 5 ~~~~~MrTptN~~L~nmAvaDllv~l~~~ 33 (87)
+..|+.|+.-|.+..||++|+++..+..+
T Consensus 26 ~~~r~lr~~~~~i~~~l~~sll~~~~~~l 54 (242)
T PF00002_consen 26 LLFRKLRSFRNKIHLNLCLSLLLANLSFL 54 (242)
T ss_dssp -----------------------------
T ss_pred HHHHhhcccchhhhhhhHHHHHHHHHHHh
Confidence 44578888889999999999998876654
No 19
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=22.45 E-value=94 Score=24.46 Aligned_cols=27 Identities=15% Similarity=0.202 Sum_probs=22.7
Q ss_pred CCcccchhHHHHHHHHHHHHHHHHhhh
Q psy2993 6 PLTRNEPSTIAVLMAMALSDMFTLLFP 32 (87)
Q Consensus 6 ~~~~MrTptN~~L~nmAvaDllv~l~~ 32 (87)
.++.+|+|.+-+..-||+.|++.....
T Consensus 59 ~~~~~k~~~ykiM~~L~i~Di~~l~~~ 85 (313)
T PF10321_consen 59 KKKLFKMSCYKIMFFLAIFDIIQLFIN 85 (313)
T ss_pred HhccccCcHHHHHHHHHHHHHHHHHhh
Confidence 356678999999999999999987653
No 20
>PF04565 RNA_pol_Rpb2_3: RNA polymerase Rpb2, domain 3; InterPro: IPR007645 RNA polymerases catalyse the DNA dependent polymerisation of RNA. Prokaryotes contain a single RNA polymerase compared to three in eukaryotes (not including mitochondrial and chloroplast polymerases). Domain 3, is also known as the fork domain and is proximal to catalytic site [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3H0G_B 1SMY_M 3DXJ_M 3AOI_C 2A68_M 1ZYR_C 3AOH_H 1IW7_M 2O5J_C 2CW0_M ....
Probab=22.24 E-value=40 Score=20.86 Aligned_cols=13 Identities=54% Similarity=1.160 Sum_probs=8.2
Q ss_pred CCCcccccc-ccCC
Q psy2993 75 HRSTAGRLC-LDTP 87 (87)
Q Consensus 75 ~~~~~~~~~-~~~~ 87 (87)
|.+.-|++| .|||
T Consensus 37 h~s~~G~iCPveTP 50 (68)
T PF04565_consen 37 HPSQYGRICPVETP 50 (68)
T ss_dssp TGGGTTTBSSSSS-
T ss_pred cccceeEEeecccC
Confidence 556778888 3555
Done!