RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2993
         (87 letters)



>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase;
           Provisional.
          Length = 459

 Score = 27.8 bits (62), Expect = 0.62
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 22  ALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEN 64
           A  ++F++LF  P+L +  TFG +  PL+  AA    N++ E 
Sbjct: 314 ATEEVFSVLFDNPFL-HTTTFGGN--PLACAAALATINVLLEQ 353


>gnl|CDD|223279 COG0201, SecY, Preprotein translocase subunit SecY [Intracellular
           trafficking and secretion].
          Length = 436

 Score = 26.4 bits (59), Expect = 1.8
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 1   MRAHLPLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSP 51
             ++LPL  N    I V+ A +L     LLFP+    ++   G  Y     
Sbjct: 256 QSSYLPLKLNYAGVIPVIFASSL-----LLFPSTIAQFLGNGGLAYYLSPL 301


>gnl|CDD|237900 PRK15071, PRK15071, lipopolysaccharide ABC transporter permease;
           Provisional.
          Length = 356

 Score = 26.0 bits (58), Expect = 2.9
 Identities = 9/16 (56%), Positives = 13/16 (81%)

Query: 12  PSTIAVLMAMALSDMF 27
           P ++AV+M MALS +F
Sbjct: 278 PLSVAVMMLMALSFIF 293


>gnl|CDD|173305 PRK14844, PRK14844, bifunctional DNA-directed RNA polymerase subunit
            beta/beta'; Provisional.
          Length = 2836

 Score = 25.4 bits (55), Expect = 4.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 3    AHLPLTRNEPSTIAVLMAMALSDMFTLLF 31
            AH+   ++ PS I  L+ M+L D+  +L+
Sbjct: 1543 AHIWFLKSLPSRIGALLDMSLRDIENILY 1571


>gnl|CDD|224183 COG1263, PtsG, Phosphotransferase system IIC components,
           glucose/maltose/N-acetylglucosamine-specific
           [Carbohydrate transport and metabolism].
          Length = 393

 Score = 24.9 bits (55), Expect = 5.8
 Identities = 6/18 (33%), Positives = 8/18 (44%)

Query: 26  MFTLLFPAPWLFYMYTFG 43
            F   F AP  F ++  G
Sbjct: 294 EFGFNFVAPKPFIIHAIG 311


>gnl|CDD|233683 TIGR02005, PTS-IIBC-alpha, PTS system, alpha-glucoside-specific
           IIBC component.  This model represents a family of fused
           PTS enzyme II B and C domains. A gene from Clostridium
           has been partially characterized as a maltose
           transporter, while genes from Fusobacterium and
           Klebsiella have been proposed to transport the five
           non-standard isomers of sucrose [Transport and binding
           proteins, Carbohydrates, organic alcohols, and acids].
          Length = 524

 Score = 25.2 bits (55), Expect = 6.2
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 13/45 (28%)

Query: 12  PSTI-AVLMAMALSDMFTLLFPAPWLF------------YMYTFG 43
           P+T+ AV++ +     FT LF AP+LF             MY FG
Sbjct: 312 PATLTAVVVGITEPLEFTFLFIAPYLFVVHAVLAASMATVMYAFG 356


>gnl|CDD|143416 cd07098, ALDH_F15-22, Aldehyde dehydrogenase family 15A1 and
           22A1-like.  Aldehyde dehydrogenase family members
           ALDH15A1 (Saccharomyces cerevisiae YHR039C) and ALDH22A1
           (Arabidopsis thaliana, EC=1.2.1.3), and similar
           sequences, are in this CD. Significant improvement of
           stress tolerance in tobacco plants was observed by
           overexpressing the ALDH22A1 gene from maize (Zea mays)
           and was accompanied by a reduction of malondialdehyde
           derived from cellular lipid peroxidation.
          Length = 465

 Score = 24.6 bits (54), Expect = 8.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 45  HYKPLSPVAACYAWN 59
            Y+PL  V A  +WN
Sbjct: 117 EYEPLGVVGAIVSWN 131


>gnl|CDD|143424 cd07106, ALDH_AldA-AAD23400, Streptomyces aureofaciens putative
           aldehyde dehydrogenase AldA (AAD23400)-like.  Putative
           aldehyde dehydrogenase, AldA, from Streptomyces
           aureofaciens (locus AAD23400) and other similar
           sequences are present in this CD.
          Length = 446

 Score = 24.4 bits (54), Expect = 9.2
 Identities = 8/15 (53%), Positives = 8/15 (53%)

Query: 45  HYKPLSPVAACYAWN 59
             KPL  VAA   WN
Sbjct: 111 RRKPLGVVAAIVPWN 125


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.326    0.137    0.463 

Gapped
Lambda     K      H
   0.267   0.0785    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,366,201
Number of extensions: 336854
Number of successful extensions: 452
Number of sequences better than 10.0: 1
Number of HSP's gapped: 451
Number of HSP's successfully gapped: 21
Length of query: 87
Length of database: 10,937,602
Length adjustment: 55
Effective length of query: 32
Effective length of database: 8,498,132
Effective search space: 271940224
Effective search space used: 271940224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.1 bits)