RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2993
         (87 letters)



>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision
           repair, xeroderma pigmentosum, cytoplasm, DNA repair;
           HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A*
           3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A*
           3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A
           2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...
          Length = 1158

 Score = 28.8 bits (63), Expect = 0.18
 Identities = 7/49 (14%), Positives = 17/49 (34%)

Query: 34  PWLFYMYTFGNHYKPLSPVAACYAWNIMNENGPHCLDNIDSHRSTAGRL 82
           P + Y       +  ++     Y   + ++  P  L   ++   T G +
Sbjct: 674 PTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTI 722


>1d0n_A Horse plasma gelsolin; mixed alpha-beta structure, actin-binding
           protein, protein D packing, contractIle protein; 2.50A
           {Equus caballus} SCOP: d.109.1.1 d.109.1.1 d.109.1.1
           d.109.1.1 d.109.1.1 d.109.1.1 PDB: 2fgh_A* 3ffn_A
           3ffk_A* 1rgi_G*
          Length = 729

 Score = 26.4 bits (57), Expect = 1.3
 Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 1/51 (1%)

Query: 4   HLPLTRNEPSTIAVLMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAA 54
             P  R+  + I V+        F   F   W    ++     + L+ +AA
Sbjct: 680 TDPAHRDRRTPITVVKQGFEPPSFVGWFLG-WDDSYWSVDPLDRALAELAA 729


>2ory_A Lipase; alpha/beta hydrolase, hydrolase; 2.20A {Photobacterium SP}
          Length = 346

 Score = 26.3 bits (57), Expect = 1.5
 Identities = 4/29 (13%), Positives = 10/29 (34%)

Query: 15  IAVLMAMALSDMFTLLFPAPWLFYMYTFG 43
           ++  +A+ L D+  +            F 
Sbjct: 179 LSSTLALWLKDIQGVKLSQNIDISTIPFA 207


>3t2c_A Fructose-1,6-bisphosphate aldolase/phosphatase; (beta/alpha)8 TIM
           barrel, FBP, F6P, DHAP, GAP, phosphorylati lyase,
           hydrolase; HET: 13P; 1.30A {Thermoproteus neutrophilus}
           PDB: 3t2b_A* 3t2d_A* 3t2e_A* 3t2f_A 3t2g_A*
          Length = 407

 Score = 25.7 bits (56), Expect = 2.5
 Identities = 9/43 (20%), Positives = 13/43 (30%)

Query: 31  FPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNENGPHCLDNID 73
           F  P L + +  G+H  PL P                 +   D
Sbjct: 255 FAHPHLVHGWMRGSHAGPLMPARFISVDPERRIAIGPKMTRFD 297


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
          acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
          synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 25.4 bits (55), Expect = 2.8
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 12/55 (21%)

Query: 6  PLTRNEPS---TIAV-----LMAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPV 52
          PLT +  S    + V      +A  L + F  + P P       F    +P +P 
Sbjct: 8  PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEP----TEGFAADDEPTTPA 58


>3r1m_A Putative uncharacterized protein ST0318; sulfolobus
           fructose-1,6-bisphosphatase-like fold, hydrolase/ Mg
           binding, metal binding protein; 1.50A {Sulfolobus
           tokodaii} PDB: 1umg_A*
          Length = 385

 Score = 24.9 bits (54), Expect = 4.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 31  FPAPWLFYMYTFGNHYKPLSPVAACYA 57
           F  P L   +  G+HY PL PV+   A
Sbjct: 255 FAFPHLVPGWMRGSHYGPLMPVSQRDA 281


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.137    0.463 

Gapped
Lambda     K      H
   0.267   0.0562    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,303,226
Number of extensions: 61033
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 6
Length of query: 87
Length of database: 6,701,793
Length adjustment: 55
Effective length of query: 32
Effective length of database: 5,166,138
Effective search space: 165316416
Effective search space used: 165316416
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.8 bits)