RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2993
         (87 letters)



>d1umga_ d.280.1.1 (A:) ST0318 {Archaeon Sulfolobus tokodaii [TaxId:
           111955]}
          Length = 362

 Score = 24.7 bits (54), Expect = 1.5
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 31  FPAPWLFYMYTFGNHYKPLSPVAACYA 57
           F  P L   +  G+HY PL PV+   A
Sbjct: 253 FAFPHLVPGWMRGSHYGPLMPVSQRDA 279


>d1rh7a_ g.77.1.1 (A:) Resistin-like beta (FIZZ2) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 81

 Score = 22.9 bits (49), Expect = 4.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 54 ACYAWNIMNENGPHC 68
           C +W+I N N  HC
Sbjct: 51 GCGSWDIRNGNTCHC 65


>d1rfxa_ g.77.1.1 (A:) Resistin (ADSF, FIZZ3) {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 89

 Score = 22.9 bits (49), Expect = 5.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)

Query: 54 ACYAWNIMNENGPHCL 69
          AC +W+I  E   HC 
Sbjct: 56 ACGSWDIREEKVCHCQ 71


>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
          Length = 309

 Score = 23.3 bits (49), Expect = 5.2
 Identities = 9/48 (18%), Positives = 16/48 (33%)

Query: 38  YMYTFGNHYKPLSPVAACYAWNIMNENGPHCLDNIDSHRSTAGRLCLD 85
           Y+    +        +A  A + + +NG   +D ID           D
Sbjct: 90  YVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGAD 137


>d1iapa_ a.91.1.1 (A:) p115RhoGEF {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 190

 Score = 23.2 bits (50), Expect = 5.3
 Identities = 6/33 (18%), Positives = 11/33 (33%), Gaps = 2/33 (6%)

Query: 19 MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSP 51
          +   L  +     P P L  ++   +    L P
Sbjct: 16 LMALLQHVALQFEPGPLLCCLHA--DMLGSLGP 46


>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
           cerevisiae) [TaxId: 4932]}
          Length = 1449

 Score = 22.9 bits (48), Expect = 8.9
 Identities = 3/29 (10%), Positives = 6/29 (20%)

Query: 36  LFYMYTFGNHYKPLSPVAACYAWNIMNEN 64
             +     N + P S         +    
Sbjct: 479 ADFDGDEMNLHVPQSEETRAELSQLCAVP 507


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.137    0.463 

Gapped
Lambda     K      H
   0.267   0.0552    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 321,477
Number of extensions: 12142
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 11
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.3 bits)