Query psy2995
Match_columns 429
No_of_seqs 157 out of 434
Neff 5.1
Searched_HMMs 29240
Date Fri Aug 16 22:47:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2995.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2995hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pm3_A MTH1895; unknown functi 37.6 8.6 0.00029 31.4 0.6 23 290-313 19-42 (97)
2 1pm3_A MTH1895; unknown functi 28.2 19 0.00064 29.3 1.1 23 192-215 19-42 (97)
3 2v2f_A Penicillin binding prot 24.7 22 0.00074 21.9 0.7 13 202-214 6-18 (26)
4 3htr_A Uncharacterized PRC-bar 22.6 28 0.00095 29.3 1.2 23 290-313 13-35 (120)
5 1fvg_A Peptide methionine sulf 16.7 1.3E+02 0.0044 27.9 4.3 35 18-52 107-157 (199)
6 1ff3_A Peptide methionine sulf 15.9 1.3E+02 0.0045 28.0 4.3 39 14-52 100-156 (211)
7 2guz_B Mitochondrial import in 14.7 53 0.0018 25.0 1.0 22 61-82 19-40 (65)
8 1faf_A Large T antigen; J doma 13.2 1.2E+02 0.0043 23.2 2.8 41 36-82 4-46 (79)
9 2ohd_A Probable molybdenum cof 13.2 56 0.0019 29.2 0.9 22 208-229 41-62 (151)
10 1ekr_A Molybdenum cofactor bio 13.2 55 0.0019 29.5 0.8 22 208-229 50-71 (161)
No 1
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=37.59 E-value=8.6 Score=31.38 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=19.5
Q ss_pred cccch-hhhhcCCccccCCCccccc
Q psy2995 290 PFMRN-KEITDGLPVYDANNNLIGN 313 (429)
Q Consensus 290 ~~mR~-~El~~Gi~V~d~~g~~~G~ 313 (429)
-+||. +|| .|-+|++.+|+.+|.
T Consensus 19 ~~Mr~~seL-~Gk~Vin~dG~~LG~ 42 (97)
T 1pm3_A 19 SHMRIVEEM-VGKEVLDSSAKVIGK 42 (97)
T ss_dssp -CEETTTTS-SSCEEECTTSCEEEE
T ss_pred eEEEeehhC-CCCEeECCCCCEEeE
Confidence 36888 887 699999999999995
No 2
>1pm3_A MTH1895; unknown function, structural genomics, PSI, protein structure initiative; 3.15A {Methanothermobacterthermautotrophicus} SCOP: b.41.1.2
Probab=28.20 E-value=19 Score=29.33 Aligned_cols=23 Identities=35% Similarity=0.603 Sum_probs=19.0
Q ss_pred hcccc-ccccCCcceecCCCccccc
Q psy2995 192 PFMRN-KEITDGLPVYDANNNLIGN 215 (429)
Q Consensus 192 ~~mR~-~El~~GI~V~D~~G~~lG~ 215 (429)
.+||. .|+. |-+|+|++|+.+|+
T Consensus 19 ~~Mr~~seL~-Gk~Vin~dG~~LG~ 42 (97)
T 1pm3_A 19 SHMRIVEEMV-GKEVLDSSAKVIGK 42 (97)
T ss_dssp -CEETTTTSS-SCEEECTTSCEEEE
T ss_pred eEEEeehhCC-CCEeECCCCCEEeE
Confidence 46888 7774 99999999999987
No 3
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=24.66 E-value=22 Score=21.94 Aligned_cols=13 Identities=38% Similarity=0.687 Sum_probs=10.3
Q ss_pred CcceecCCCcccc
Q psy2995 202 GLPVYDANNNLIG 214 (429)
Q Consensus 202 GI~V~D~~G~~lG 214 (429)
--.+||+||+++.
T Consensus 6 ss~IYD~~g~~i~ 18 (26)
T 2v2f_A 6 SSKIYDNKNQLIA 18 (26)
T ss_pred CCEEEeCCCCEee
Confidence 3578999999774
No 4
>3htr_A Uncharacterized PRC-barrel domain protein; beta-barrel, photo-reaction-center domain, structural genomics, PSI-2; HET: MSE; 2.06A {Rhodopseudomonas palustris}
Probab=22.60 E-value=28 Score=29.31 Aligned_cols=23 Identities=22% Similarity=0.575 Sum_probs=19.8
Q ss_pred cccchhhhhcCCccccCCCccccc
Q psy2995 290 PFMRNKEITDGLPVYDANNNLIGN 313 (429)
Q Consensus 290 ~~mR~~El~~Gi~V~d~~g~~~G~ 313 (429)
-+||.+|| .|-+|++.+|+.+|+
T Consensus 13 ~l~~~~~l-~G~~V~~~dG~~iG~ 35 (120)
T 3htr_A 13 KLIGSDKV-QGTAVYGPDGEKIGS 35 (120)
T ss_dssp SEEEHHHH-TTCEEECTTSCEEEE
T ss_pred ceEehhhc-cCCEEEcCCCCEEEE
Confidence 46777887 899999999999996
No 5
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos taurus} SCOP: d.58.28.1 PDB: 1fva_A 2l90_A*
Probab=16.73 E-value=1.3e+02 Score=27.91 Aligned_cols=35 Identities=17% Similarity=0.360 Sum_probs=28.2
Q ss_pred hhhHHHHHHHhhcCCccc---------------c-cCHHHHHHHHHHHHHH
Q psy2995 18 TYWGRARYFFNTTNPINL---------------L-ASPSQLDEAKRLVDDY 52 (429)
Q Consensus 18 t~~gR~~~f~~~~~P~~l---------------~-~S~~eL~~Ak~lv~~~ 52 (429)
+|.-=+++||.+.||..+ | .+++|.+.|++.++.+
T Consensus 107 sy~~LL~~F~~~hDPT~~nrQG~D~G~QYRS~If~~~~~Q~~~A~~~~~~~ 157 (199)
T 1fvg_A 107 SFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDY 157 (199)
T ss_dssp CHHHHHHHHHHTSCTTCSSEETTEESGGGCEEECCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCcccCCCCCCCChhheeccccCCHHHHHHHHHHHHHH
Confidence 888889999999999864 2 4678888888877655
No 6
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR, MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP: d.58.28.1 PDB: 2gt3_A 2iem_A
Probab=15.90 E-value=1.3e+02 Score=28.04 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=30.0
Q ss_pred Cccc--hhhHHHHHHHhhcCCccc---------------c-cCHHHHHHHHHHHHHH
Q psy2995 14 WDQN--TYWGRARYFFNTTNPINL---------------L-ASPSQLDEAKRLVDDY 52 (429)
Q Consensus 14 ~d~~--t~~gR~~~f~~~~~P~~l---------------~-~S~~eL~~Ak~lv~~~ 52 (429)
||.+ +|.-=+++||.+.||..+ | .+++|.+.|++.++.+
T Consensus 100 yDp~~isy~~LL~~F~~~hDPT~~nrQG~D~GtQYRSaIf~~~~eQ~~~A~~~~~~~ 156 (211)
T 1ff3_A 100 YDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERF 156 (211)
T ss_dssp ECTTTSCHHHHHHHHHHSSCTTSSSEETTEESGGGCCEECCSSHHHHHHHHHHHHHH
T ss_pred ECCCcCCHHHHHHHHHHhcCCcccCCCCCCcCccceeeeecCCHHHHHHHHHHHHHH
Confidence 4444 788889999999999864 2 5678888888877655
No 7
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=14.66 E-value=53 Score=24.96 Aligned_cols=22 Identities=9% Similarity=0.122 Sum_probs=15.8
Q ss_pred CChhhhhhhhcccccccccCCC
Q psy2995 61 KTLDEVWRAKDLVDSAFHPQTG 82 (429)
Q Consensus 61 tt~e~i~~a~~~r~SafhPdTg 82 (429)
.+.++|-++..--++.-|||.|
T Consensus 19 a~~~~Ik~~yr~Lm~~nhPDkG 40 (65)
T 2guz_B 19 LNMDKINNRFNYLFEVNDKEKG 40 (65)
T ss_dssp CSHHHHHHHHHHHHHHTCGGGT
T ss_pred CCHHHHHHHHHHHHHHhCCCCC
Confidence 4577777776667777888766
No 8
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=13.22 E-value=1.2e+02 Score=23.19 Aligned_cols=41 Identities=15% Similarity=0.161 Sum_probs=26.8
Q ss_pred ccCHHHHHHHHHHHHHHhcCCCCCC--CChhhhhhhhcccccccccCCC
Q psy2995 36 LASPSQLDEAKRLVDDYKKGKELPG--KTLDEVWRAKDLVDSAFHPQTG 82 (429)
Q Consensus 36 ~~S~~eL~~Ak~lv~~~~~g~~hP~--tt~e~i~~a~~~r~SafhPdTg 82 (429)
+.+.++..++-+++ | +.++ .+.++|-++.+-..--+|||.+
T Consensus 4 ~~~~~~~~~~y~iL-----g-l~~~~~a~~~eIk~aYr~la~~~HPDk~ 46 (79)
T 1faf_A 4 VLSRADKERLLELL-----K-LPRQLWGDFGRMQQAYKQQSLLLHPDKG 46 (79)
T ss_dssp CCCHHHHHHHHHHH-----T-CCSSSTTCHHHHHHHHHHHHHHSSGGGS
T ss_pred cccchhHHHHHHHc-----C-CCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 44566666666654 3 4556 6788888776555667899864
No 9
>2ohd_A Probable molybdenum cofactor biosynthesis protein; alpha + beta, biosynthetic protein; 2.20A {Sulfolobus tokodaii str}
Probab=13.22 E-value=56 Score=29.15 Aligned_cols=22 Identities=9% Similarity=0.123 Sum_probs=20.1
Q ss_pred CCCccccchHHHHhhhhhhhhh
Q psy2995 208 ANNNLIGNSQKAAVTGISMVVV 229 (429)
Q Consensus 208 ~~G~~lG~S~~Ag~~AV~qta~ 229 (429)
+.|++++..|.||-+|.++|.-
T Consensus 41 ~KGdVl~vAriAgImaaK~T~~ 62 (151)
T 2ohd_A 41 EKGDVITVAKTAGILAAKKTPE 62 (151)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHhhhHhh
Confidence 6789999999999999999964
No 10
>1ekr_A Molybdenum cofactor biosynthesis protein C; MOAC, molybdenum cofactor (MOCO), MOCO biosynthesis, MOCO DE translation; 2.00A {Escherichia coli} SCOP: d.58.21.1 PDB: 1eks_A*
Probab=13.21 E-value=55 Score=29.52 Aligned_cols=22 Identities=5% Similarity=0.086 Sum_probs=19.9
Q ss_pred CCCccccchHHHHhhhhhhhhh
Q psy2995 208 ANNNLIGNSQKAAVTGISMVVV 229 (429)
Q Consensus 208 ~~G~~lG~S~~Ag~~AV~qta~ 229 (429)
+.|++++..|+||-+|.++|.-
T Consensus 50 ~KGdVl~vAriAgImaAK~T~~ 71 (161)
T 1ekr_A 50 HKGDVFATARIAGIQAAKRTWD 71 (161)
T ss_dssp TTCCHHHHHHHHHHHHHHTHHH
T ss_pred CCccHHHHHHHHHHHHHHhhhh
Confidence 5789999999999999999954
Done!