Query psy2995
Match_columns 429
No_of_seqs 157 out of 434
Neff 5.1
Searched_HMMs 13730
Date Fri Aug 16 22:47:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2995.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2995hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f1la1 b.41.1.4 (A:101-175) 1 22.4 12 0.00084 27.2 0.7 15 201-215 7-21 (75)
2 d2hfva1 d.58.5.5 (A:23-97) Hyp 14.2 26 0.0019 25.9 1.0 21 32-52 45-65 (75)
3 d1s6la1 a.4.5.79 (A:21-80) Alk 13.4 22 0.0016 25.3 0.3 10 304-313 45-54 (60)
4 d1nwaa_ d.58.28.1 (A:) Peptide 11.4 73 0.0053 26.3 3.2 38 16-53 64-117 (168)
5 d2k49a2 d.348.1.1 (A:1-58) Unc 11.3 49 0.0035 23.0 1.7 23 303-325 19-46 (58)
6 d1ff3a_ d.58.28.1 (A:) Peptide 11.0 1.1E+02 0.0079 26.3 4.4 40 14-53 100-157 (211)
7 d1ijwc_ a.4.1.2 (C:) HIN recom 10.8 59 0.0043 21.5 1.9 15 36-50 5-19 (47)
8 d3bida1 d.348.1.1 (A:1-56) Unc 10.7 52 0.0038 22.6 1.7 23 303-325 17-44 (56)
9 d2ouxa2 d.37.1.1 (A:136-262) M 10.3 45 0.0033 25.4 1.3 15 299-313 97-111 (127)
10 d1r3sa_ c.1.22.1 (A:) Uroporph 10.2 1.1E+02 0.0081 27.3 4.4 37 30-66 295-340 (356)
No 1
>d2f1la1 b.41.1.4 (A:101-175) 16S rRNA processing protein RimM, C-terminal domain {Pseudomonas aeruginosa [TaxId: 287]}
Probab=22.36 E-value=12 Score=27.16 Aligned_cols=15 Identities=40% Similarity=0.722 Sum_probs=13.3
Q ss_pred CCcceecCCCccccc
Q psy2995 201 DGLPVYDANNNLIGN 215 (429)
Q Consensus 201 ~GI~V~D~~G~~lG~ 215 (429)
-|.+|+|++|+.+|+
T Consensus 7 iG~~V~d~~g~~lG~ 21 (75)
T d2f1la1 7 EGLKVIDQGRQLLGV 21 (75)
T ss_dssp TTCEEEETTSCEEEE
T ss_pred CCCEEEeCCCCEEEE
Confidence 389999999999987
No 2
>d2hfva1 d.58.5.5 (A:23-97) Hypothetical protein RPA1041 {Rhodopseudomonas palustris [TaxId: 1076]}
Probab=14.19 E-value=26 Score=25.93 Aligned_cols=21 Identities=33% Similarity=0.526 Sum_probs=19.7
Q ss_pred CcccccCHHHHHHHHHHHHHH
Q psy2995 32 PINLLASPSQLDEAKRLVDDY 52 (429)
Q Consensus 32 P~~l~~S~~eL~~Ak~lv~~~ 52 (429)
||-+.+.++++++||+++.+.
T Consensus 45 PRRimV~~~d~~~Ar~lL~da 65 (75)
T d2hfva1 45 PRRVLVHEDDLAGARRLLTDA 65 (75)
T ss_dssp CEEEEEEGGGHHHHHHHHHHT
T ss_pred eEEEEEcHhHHHHHHHHHHHc
Confidence 899999999999999999776
No 3
>d1s6la1 a.4.5.79 (A:21-80) Alkylmercury lyase MerB {Escherichia coli [TaxId: 562]}
Probab=13.36 E-value=22 Score=25.32 Aligned_cols=10 Identities=50% Similarity=1.016 Sum_probs=9.0
Q ss_pred ccCCCccccc
Q psy2995 304 YDANNNLIGN 313 (429)
Q Consensus 304 ~d~~g~~~G~ 313 (429)
||++|++||.
T Consensus 45 yD~~G~ivG~ 54 (60)
T d1s6la1 45 YDKDGNIIGY 54 (60)
T ss_dssp EETTTEECCC
T ss_pred ecCCCCEEee
Confidence 8999999984
No 4
>d1nwaa_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=11.41 E-value=73 Score=26.34 Aligned_cols=38 Identities=18% Similarity=0.225 Sum_probs=30.1
Q ss_pred cchhhHHHHHHHhhcCCcccc----------------cCHHHHHHHHHHHHHHh
Q psy2995 16 QNTYWGRARYFFNTTNPINLL----------------ASPSQLDEAKRLVDDYK 53 (429)
Q Consensus 16 ~~t~~gR~~~f~~~~~P~~l~----------------~S~~eL~~Ak~lv~~~~ 53 (429)
+-+|--=++|||.+.||..+- .+++|...|++.++...
T Consensus 64 ~is~~~Ll~~ff~~hdPt~~~~Qg~D~G~QYRS~If~~~~~Q~~~a~~~i~~~~ 117 (168)
T d1nwaa_ 64 VTDYRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVE 117 (168)
T ss_dssp TCCHHHHHHHHHHHSCTTSTTEETTEESGGGCEEEEESSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCCccccccCCCCCccceeeEEeeccchHHHHHHHHHHHH
Confidence 446777789999999998862 57788888888877664
No 5
>d2k49a2 d.348.1.1 (A:1-58) Uncharacterized protein SO3888 {Shewanella oneidensis [TaxId: 70863]}
Probab=11.29 E-value=49 Score=22.98 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=16.4
Q ss_pred cccCCCccccc-----hHHHHHhhhhhh
Q psy2995 303 VYDANNNLIGN-----SQKAAVTGISMV 325 (429)
Q Consensus 303 V~d~~g~~~G~-----S~~Aa~~ai~~~ 325 (429)
+.+.||++|+. |+.+|..||..|
T Consensus 19 Lka~NGevIa~Se~Y~sk~~a~~gI~sV 46 (58)
T d2k49a2 19 LKAGNGEVILTSELYTGKSGAMNGIESV 46 (58)
T ss_dssp EECSSSCEEEECCCBSSHHHHHHHHHHH
T ss_pred EEcCCCCEEEEcCCcCCHHHHHHHHHHH
Confidence 45678999974 466788877654
No 6
>d1ff3a_ d.58.28.1 (A:) Peptide methionine sulfoxide reductase {Escherichia coli [TaxId: 562]}
Probab=11.02 E-value=1.1e+02 Score=26.30 Aligned_cols=40 Identities=18% Similarity=0.454 Sum_probs=30.3
Q ss_pred Cccc--hhhHHHHHHHhhcCCcc---------------cc-cCHHHHHHHHHHHHHHh
Q psy2995 14 WDQN--TYWGRARYFFNTTNPIN---------------LL-ASPSQLDEAKRLVDDYK 53 (429)
Q Consensus 14 ~d~~--t~~gR~~~f~~~~~P~~---------------l~-~S~~eL~~Ak~lv~~~~ 53 (429)
||.+ +|.-=+++||.+.||.. +| .+++|...|++.++.+.
T Consensus 100 yDp~~isy~~Ll~~F~~~hDPT~~n~Qg~D~G~QYRSaIf~~~~eQ~~~A~~~i~~~q 157 (211)
T d1ff3a_ 100 YDPSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQ 157 (211)
T ss_dssp ECTTTSCHHHHHHHHHHSSCTTSSSEETTEESGGGCCEECCSSHHHHHHHHHHHHHHH
T ss_pred eccccCCHHHHHHHHHHhcCccccccccccCCccccceeeechhHHHHHHHHHHHHHH
Confidence 4544 78888999999999986 44 45677778887776653
No 7
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=10.80 E-value=59 Score=21.50 Aligned_cols=15 Identities=13% Similarity=0.337 Sum_probs=13.0
Q ss_pred ccCHHHHHHHHHHHH
Q psy2995 36 LASPSQLDEAKRLVD 50 (429)
Q Consensus 36 ~~S~~eL~~Ak~lv~ 50 (429)
.+|++|+++|+++++
T Consensus 5 ~lt~~q~~~a~~l~~ 19 (47)
T d1ijwc_ 5 AINKHEQEQISRLLE 19 (47)
T ss_dssp SSCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 469999999999974
No 8
>d3bida1 d.348.1.1 (A:1-56) Uncharacterized protein NMB1088 {Neisseria meningitidis [TaxId: 487]}
Probab=10.68 E-value=52 Score=22.62 Aligned_cols=23 Identities=17% Similarity=0.407 Sum_probs=16.0
Q ss_pred cccCCCccccc-----hHHHHHhhhhhh
Q psy2995 303 VYDANNNLIGN-----SQKAAVTGISMV 325 (429)
Q Consensus 303 V~d~~g~~~G~-----S~~Aa~~ai~~~ 325 (429)
+.+.||++|+. |+.+|..||..|
T Consensus 17 Lka~Ng~vIa~Se~Y~sk~~a~~gI~sV 44 (56)
T d3bida1 17 LKAANHEIIAQGEGYTSKQNCQHAVDLL 44 (56)
T ss_dssp EECTTSCEEEECCCBSCHHHHHHHHHHH
T ss_pred EEeCCCCEEEecCCcCCHHHHHHHHHHH
Confidence 34678999974 466777777654
No 9
>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}
Probab=10.25 E-value=45 Score=25.35 Aligned_cols=15 Identities=33% Similarity=0.581 Sum_probs=12.9
Q ss_pred cCCccccCCCccccc
Q psy2995 299 DGLPVYDANNNLIGN 313 (429)
Q Consensus 299 ~Gi~V~d~~g~~~G~ 313 (429)
.-+||.|++|+++|.
T Consensus 97 ~~lPVVD~~g~lvGi 111 (127)
T d2ouxa2 97 LAVPVTDYDDHLLGI 111 (127)
T ss_dssp SEEEEECTTCBEEEE
T ss_pred EEEEEEeCCCEEEEE
Confidence 467899999999993
No 10
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.17 E-value=1.1e+02 Score=27.33 Aligned_cols=37 Identities=27% Similarity=0.475 Sum_probs=27.0
Q ss_pred cCCcccccCHHHHH-HHHHHHHHHhc-------C-CCCCCCChhhh
Q psy2995 30 TNPINLLASPSQLD-EAKRLVDDYKK-------G-KELPGKTLDEV 66 (429)
Q Consensus 30 ~~P~~l~~S~~eL~-~Ak~lv~~~~~-------g-~~hP~tt~e~i 66 (429)
.||..|+.+.++++ +.+++++..+. | -+.|+|..|.+
T Consensus 295 ldP~~L~~~~e~i~~~~~~~l~~~~~~~~I~nlGhGI~p~tp~env 340 (356)
T d1r3sa_ 295 LDPCALYASEEEIGQLVKQMLDDFGPHRYIANLGHGLYPDMDPEHV 340 (356)
T ss_dssp ECGGGGGSCHHHHHHHHHHHHHHHCSSSEEEEESSCCCTTCCHHHH
T ss_pred CCHHHHcCCHHHHHHHHHHHHHHhCCCCeEEeCCCCcCCCCCHHHH
Confidence 38999999999997 57888888863 1 25677655544
Done!