RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2995
(429 letters)
>gnl|CDD|112624 pfam03820, Mtc, Tricarboxylate carrier.
Length = 307
Score = 353 bits (908), Expect = e-121
Identities = 144/256 (56%), Positives = 178/256 (69%), Gaps = 15/256 (5%)
Query: 14 WDQNTYWGRARYFFNTTNPINLLASPSQLDEAKRLVDDYKKGKELPGKTLDEVWRAKDLV 73
WDQ+T+ GRAR+FF TNP+NLL+S QL++A+++V+ Y+ GK P T+DE+WRAK L
Sbjct: 1 WDQSTFLGRARHFFEITNPLNLLSSEKQLEKARKIVERYRAGKVSPNLTVDELWRAKKLY 60
Query: 74 DSAFHPQTGEKMIIFGRMSAQVPMNVFITGAMLTFYKSTPAVVFWQWFNQSFNAVVNYTN 133
DSAFHP TGEK+ + GRMSAQVPMN+ ITG MLTFY+ TP VVFWQWFNQSFNA VNYTN
Sbjct: 61 DSAFHPDTGEKVFLPGRMSAQVPMNMLITGGMLTFYRGTPGVVFWQWFNQSFNAAVNYTN 120
Query: 134 RSGGSPVDESLLIKSYCAATGSAVATALSLNHLAKKAPPIFARLVPFSAVAAANMVNIPF 193
RSG SP+ L+ SYCAAT A+ AL LN L K+ PP+ RLVPF+AVAAAN +NIP
Sbjct: 121 RSGDSPISSRQLLVSYCAATTGALGVALGLNKLVKRMPPLLGRLVPFAAVAAANAINIPL 180
Query: 194 MRNKEITDGLPVYDANNNLIGNSQKAAVTGISMVVVSRIGMATPGMSELLIKSYCAATGS 253
MR E+ +G+ V+D N +G S+KAA I VV+SRI MA PGM
Sbjct: 181 MRGNELRNGIDVFDENGQTVGKSKKAAFDAIGQVVLSRIAMAVPGM-------------- 226
Query: 254 AVATALSLNHLAKKAP 269
V L +N L K+
Sbjct: 227 -VLPPLIMNRLEKRPW 241
Score = 221 bits (564), Expect = 4e-69
Identities = 91/194 (46%), Positives = 120/194 (61%), Gaps = 11/194 (5%)
Query: 236 TPGMSELLIKSYCAATGSAVATALSLNHLAKKAPPIFARLVPFSAVAAANMVNIPFMRNK 295
+P S L+ SYCAAT A+ AL LN L K+ PP+ RLVPF+AVAAAN +NIP MR
Sbjct: 125 SPISSRQLLVSYCAATTGALGVALGLNKLVKRMPPLLGRLVPFAAVAAANAINIPLMRGN 184
Query: 296 EITDGLPVYDANNNLIGNSQKAAVTGISMVVVSRIGMATPGMIGIPVILNYLERKGTIRH 355
E+ +G+ V+D N +G S+KAA I VV+SRI MA PGM+ P+I+N LE++ +R
Sbjct: 185 ELRNGIDVFDENGQTVGKSKKAAFDAIGQVVLSRIAMAVPGMVLPPLIMNRLEKRPWLRR 244
Query: 356 LKWAPTAIQIGLLAVFLTFTTPMCCALFPQQTPIQISSLEPELQERAKKLNPPPTERAKK 415
WA +Q L + LTF TP+ CALFPQ++ I + LEPEL + K PP K
Sbjct: 245 RPWANAPLQTLLCGLGLTFATPLACALFPQRSSISVDKLEPELHDLKDKDGNPP----KT 300
Query: 416 LNPPPTVGYYNKGL 429
+ Y+NKGL
Sbjct: 301 V-------YFNKGL 307
>gnl|CDD|129880 TIGR00798, mtc, tricarboxylate carrier. The MTC family consists of
a limited number of homologues, all from eukaryotes. A
single member of the family has been functionally
characterized, the tricarboxylate carrier from rat liver
mitochondria. The rat liver mitochondrial tricarboxylate
carrier has been reported to transport citrate,
cis-aconitate, threo-D-isocitrate, D- and L-tartrate,
malate, succinate and phosphoenolpyruvate. It presumably
functions by a proton symport mechanism [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 318
Score = 333 bits (855), Expect = e-112
Identities = 139/238 (58%), Positives = 173/238 (72%), Gaps = 4/238 (1%)
Query: 5 PQVNLDKPRWDQNTYWGRARYFFNTTNPINLLASPSQLDEAKRLVDDYKKGKELPGKTLD 64
P ++ KPRWDQ+T+ GRAR+FF TNP+ L +S QL++A+ +V+DYK GK T+D
Sbjct: 1 PTFDISKPRWDQSTFLGRARHFFEITNPLTLFSSEKQLEKAREIVEDYKAGK-ASPLTVD 59
Query: 65 EVWRAKDLVDSAFHPQTGEKMIIFGRMSAQVPMNVFITGAMLTFYKSTPAVVFWQWFNQS 124
E+WRAK L DSAFHP TGEKM + GRMSAQVPMN+ ITG MLT Y+STP VVFWQW NQS
Sbjct: 60 ELWRAKKLYDSAFHPDTGEKMFLPGRMSAQVPMNMVITGGMLTPYRSTPGVVFWQWINQS 119
Query: 125 FNAVVNYTNRSGGSPVDESLLIKSYCAATGSAVATALSLNHLAKKAP---PIFARLVPFS 181
FNA VNYTNRSG SP+ S L+ SYCAA A AL LN + KK+P P+ RLVPF+
Sbjct: 120 FNAAVNYTNRSGDSPLTLSQLLVSYCAAVTGACGVALGLNMMVKKSPSLSPLIGRLVPFA 179
Query: 182 AVAAANMVNIPFMRNKEITDGLPVYDANNNLIGNSQKAAVTGISMVVVSRIGMATPGM 239
AVA AN +NIP MR E+T+G+ V+D + +G S+KAA I+ VV+SR+ MA P M
Sbjct: 180 AVAVANAINIPMMRGNELTEGIEVFDEDGETVGKSKKAAALAIAQVVLSRVIMAVPDM 237
Score = 194 bits (496), Expect = 7e-59
Identities = 88/197 (44%), Positives = 116/197 (58%), Gaps = 14/197 (7%)
Query: 236 TPGMSELLIKSYCAATGSAVATALSLNHLAKKAP---PIFARLVPFSAVAAANMVNIPFM 292
+P L+ SYCAA A AL LN + KK+P P+ RLVPF+AVA AN +NIP M
Sbjct: 133 SPLTLSQLLVSYCAAVTGACGVALGLNMMVKKSPSLSPLIGRLVPFAAVAVANAINIPMM 192
Query: 293 RNKEITDGLPVYDANNNLIGNSQKAAVTGISMVVVSRIGMATPGMIGIPVILNYLERKGT 352
R E+T+G+ V+D + +G S+KAA I+ VV+SR+ MA P M+ P+I+N LER
Sbjct: 193 RGNELTEGIEVFDEDGETVGKSKKAAALAIAQVVLSRVIMAVPDMVMPPLIMNRLERTAW 252
Query: 353 IRHLKWAPTAIQIGLLAVFLTFTTPMCCALFPQQTPIQISSLEPELQERAKKLNPPPTER 412
+R W IQ L + L F TP+ CALFPQ++ I + LEP LQ +KL PP
Sbjct: 253 LRARPWMQIPIQTLLCGLGLAFATPLACALFPQKSAISVDKLEPSLQNLIQKLGNPP--- 309
Query: 413 AKKLNPPPTVGYYNKGL 429
K + YYNKGL
Sbjct: 310 -KVV-------YYNKGL 318
>gnl|CDD|183059 PRK11253, ldcA, L,D-carboxypeptidase A; Provisional.
Length = 305
Score = 36.1 bits (84), Expect = 0.026
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 11/70 (15%)
Query: 330 IGMATPGMIGIPVILNYLERKGTIRHLKWAP---------TAIQIGLLAV--FLTFTTPM 378
I +A G G +L ++ +G + P TAIQ+ LLA +TF+ PM
Sbjct: 69 IVLAVRGGYGASRLLAGIDWQGLAARQQDDPLLIVGHSDFTAIQLALLAQANVITFSGPM 128
Query: 379 CCALFPQQTP 388
A F +T
Sbjct: 129 LAADFGAETL 138
>gnl|CDD|130293 TIGR01226, phe_am_lyase, phenylalanine ammonia-lyase. Members of
this family are found, so far, in plants and fungi.
From phenylalanine, this enzyme yields cinnaminic acid,
a precursor of many important plant compounds. This
protein shows extensive homology to histidine
ammonia-lyase, the first enzyme of a histidine
degradation pathway.
Length = 680
Score = 30.5 bits (69), Expect = 1.7
Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
Query: 40 SQLDEAKRLVDDYKKGKE--LPGKTL 63
SQLDE KR+V +Y+ G L G TL
Sbjct: 15 SQLDEVKRMVAEYRNGPLIKLDGATL 40
>gnl|CDD|227244 COG4907, COG4907, Predicted membrane protein [Function unknown].
Length = 595
Score = 29.9 bits (67), Expect = 3.1
Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 2/76 (2%)
Query: 45 AKRLVDDYKKGKEL--PGKTLDEVWRAKDLVDSAFHPQTGEKMIIFGRMSAQVPMNVFIT 102
R +D G L K E + V + + + G K G ++ + VF+
Sbjct: 379 DGRSLDLKSIGFFLKVELKKAGEFEKWSSYVVNEMNRKRGLKYEHIGCVATIIFALVFLY 438
Query: 103 GAMLTFYKSTPAVVFW 118
A + + V
Sbjct: 439 FAFIGLLSTAFNTVNT 454
>gnl|CDD|236292 PRK08566, PRK08566, DNA-directed RNA polymerase subunit A';
Validated.
Length = 882
Score = 29.8 bits (68), Expect = 3.8
Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 43 DEAKRLVDDYKKGK--ELPGKTLDE 65
+ L++ Y+ G+ LPG+TL+E
Sbjct: 671 KRVEELIEAYENGELEPLPGRTLEE 695
>gnl|CDD|238427 cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific
polyketide synthases (PKS) and related enzymes, also
called type III PKSs. PKS generate an array of different
products, dependent on the nature of the starter
molecule. They share a common chemical strategy, after
the starter molecule is loaded onto the active site
cysteine, a carboxylative condensation reation extends
the polyketide chain. Plant-specific PKS are dimeric
iterative PKSs, using coenzyme A esters to deliver
substrate to the active site, but they differ in the
choice of starter molecule and the number of
condensation reactions.
Length = 361
Score = 28.7 bits (65), Expect = 6.0
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 15/48 (31%)
Query: 226 MVVVSRIGMATPGMSELLIKSY---------------CAATGSAVATA 258
+VV + G TP + +LI C+A A+ A
Sbjct: 110 LVVNTSTGNPTPSLDAMLINRLGLRPDVKRYNLGGMGCSAGAIALDLA 157
>gnl|CDD|140256 PTZ00229, PTZ00229, variable surface protein Vir30; Provisional.
Length = 317
Score = 28.4 bits (63), Expect = 7.0
Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Query: 119 QWFNQSFNAVVNYTNRSGG-SPVDESLLIKSYCAATGSAVATALSLNHLAKKAPPIFARL 177
+W + F + NY ++ +D S S C + A + L +N AK F +L
Sbjct: 12 KWIYKFFKDIDNYIAKAKDVESIDISDDAPSACTSFSRAWESKLKINGTAKNICEKFIKL 71
>gnl|CDD|237299 PRK13197, PRK13197, pyrrolidone-carboxylate peptidase; Provisional.
Length = 215
Score = 27.9 bits (63), Expect = 9.0
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 163 LNHLAKKAPPIFARLV--PFSAVAAANMVNIPFMRNKEITDGL 203
L+ L KK P I A + P+ A N P M ++I GL
Sbjct: 151 LHLLDKKYPNIRAGFIHIPYLPEQAVNKPGTPSMSLEDIVRGL 193
Score = 27.9 bits (63), Expect = 9.0
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 261 LNHLAKKAPPIFARLV--PFSAVAAANMVNIPFMRNKEITDGL 301
L+ L KK P I A + P+ A N P M ++I GL
Sbjct: 151 LHLLDKKYPNIRAGFIHIPYLPEQAVNKPGTPSMSLEDIVRGL 193
>gnl|CDD|222140 pfam13452, zf-MaoC, Metal-binding domain of MaoC dehydratase.
Length = 132
Score = 27.3 bits (61), Expect = 9.9
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 146 IKSYCAATGSA------VATALSLNHLAKKAPPIFARLVPFSAVAAANMVNIPFMR 195
++ + A G A + + APP F ++ F A A + I R
Sbjct: 19 VREFARAIGDTNPIYWDEEAARAAGYDGLPAPPTFLFVLGFGAPAFLEDLGIDLSR 74
Score = 27.3 bits (61), Expect = 9.9
Identities = 12/56 (21%), Positives = 20/56 (35%), Gaps = 6/56 (10%)
Query: 244 IKSYCAATGSA------VATALSLNHLAKKAPPIFARLVPFSAVAAANMVNIPFMR 293
++ + A G A + + APP F ++ F A A + I R
Sbjct: 19 VREFARAIGDTNPIYWDEEAARAAGYDGLPAPPTFLFVLGFGAPAFLEDLGIDLSR 74
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.133 0.396
Gapped
Lambda K H
0.267 0.0729 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 22,200,473
Number of extensions: 2173017
Number of successful extensions: 2033
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2026
Number of HSP's successfully gapped: 25
Length of query: 429
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 329
Effective length of database: 6,502,202
Effective search space: 2139224458
Effective search space used: 2139224458
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.9 bits)