RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2995
         (429 letters)



>d2e1da1 c.1.10.1 (A:13-331) Transaldolase {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 319

 Score = 31.2 bits (70), Expect = 0.22
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 5/80 (6%)

Query: 29  TTNPINLLASPSQLDEAKRLVDD-YKKGKELPGKTLDEVWRAKDLVDSAFHPQTGEKMII 87
           TTNP  +LA+ +Q+   + LV++    GK+L G   +++  A D +   F  +  +   I
Sbjct: 31  TTNPSLILAA-AQMPAYQELVEEAIAYGKKLGGPQEEQIKNAIDKLFVLFGAEILK--KI 87

Query: 88  FGRMSAQV-PMNVFITGAML 106
            GR+S +V     F   AM+
Sbjct: 88  PGRVSTEVDARLSFDKDAMV 107


>d1onra_ c.1.10.1 (A:) Transaldolase {Escherichia coli [TaxId: 562]}
          Length = 316

 Score = 30.1 bits (67), Expect = 0.43
 Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 4/73 (5%)

Query: 29  TTNPINLLASPSQLDEAKRLVDDY-KKGKELPGKTLDEVWRAKDLVDSAFHPQTGEKMII 87
           TTNP  +L + +Q+ E ++L+DD     K+       ++  A D +      +  +  ++
Sbjct: 32  TTNPSLILNA-AQIPEYRKLIDDAVAWAKQQSNDRAQQIVDATDKLAVNIGLEILK--LV 88

Query: 88  FGRMSAQVPMNVF 100
            GR+S +V   + 
Sbjct: 89  PGRISTEVDARLS 101


>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 156

 Score = 25.7 bits (55), Expect = 7.3
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 4/119 (3%)

Query: 194 MRNKEITDGLPVYDANNNLIGNSQKAAVTGISMVVVSRIGMATPGMSELLIKSYCAATGS 253
           +        LPV D+  NL+G   +     +    + RI  +T   +    +    +  +
Sbjct: 30  LLLSNSM-ALPVVDSEGNLVGIVDET--DLLRDSEIVRIMKSTELAASSEEEWILESHPT 86

Query: 254 AVATALSLNHLAKKAPPIFARLVPFSAVAAANMVNIPFMRNKEITDGLPVYDANNNLIG 312
            +     L    K    I  R V  +            M    I   LPV     +LIG
Sbjct: 87  LLFEKFELQLPNKPVAEIMTRDVIVATPHMTVHEVALKMAKYSIE-QLPVIRGEGDLIG 144


>d1w27a_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Parsley
          (Petroselinum crispum), PAL1 [TaxId: 4043]}
          Length = 692

 Score = 26.4 bits (58), Expect = 7.6
 Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 40 SQLDEAKRLVDDYKKGK-ELPGKTLDEVWRAKDLVDSAFHPQTGEKM 85
          S LDE K++V +Y+K   +L G+TL        +   +    +G  +
Sbjct: 16 SHLDEVKKMVAEYRKPVVKLGGETL----TISQVAAISARDGSGVTV 58


>d1t6ja_ a.127.1.2 (A:) Phenylalanine ammonia-lyase, PAL {Fungi
          (Rhodosporidium toruloides) [TaxId: 5286]}
          Length = 678

 Score = 26.5 bits (58), Expect = 8.3
 Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 3/33 (9%)

Query: 40 SQLDEAKRLVDDYKKGK-ELPGKTL--DEVWRA 69
          +Q+D  ++++        EL G +L   +V  A
Sbjct: 5  TQVDIVEKMLAAPTDSTLELDGYSLNLGDVVSA 37


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.396 

Gapped
Lambda     K      H
   0.267   0.0426    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,573,399
Number of extensions: 70861
Number of successful extensions: 158
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 5
Length of query: 429
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 341
Effective length of database: 1,199,356
Effective search space: 408980396
Effective search space used: 408980396
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)