BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2997
(415 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13073|COX41_HUMAN Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Homo
sapiens GN=COX4I1 PE=1 SV=1
Length = 169
Score = 86.7 bits (213), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 79/169 (46%), Gaps = 17/169 (10%)
Query: 36 TRLFPFTGNR------------EVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLR 82
TR+F G R VV + AY D P P + + K + L+
Sbjct: 4 TRVFSLVGKRAISTSVCVRAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALK 63
Query: 83 EKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYA 142
EKEK W++LS +EK LYR F+++FAE R E+ VG +M I +
Sbjct: 64 EKEKASWSSLSMDEKVELYRIKFKESFAEMNR----GSNEWKTVVGGAMFFIGFTALVIM 119
Query: 143 FLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
+ K + PLP + E +M+ ++ NPI G+ASKWDYE + W+
Sbjct: 120 WQKHYVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWK 168
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 20/165 (12%)
Query: 226 GNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLY 284
+ VV + AY D P P + + K + L+EKEK W++LS +EK LY
Sbjct: 23 AHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELY 82
Query: 285 RASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKA 344
R F+++FAE R E+ VG +M I + ++ + K
Sbjct: 83 RIKFKESFAEMNR----GSNEWKTVVGGAMFFIGFTALVIM---------------WQKH 123
Query: 345 FFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
+ PLP + E +M+ ++ NPI G+ASKWDYE + W+
Sbjct: 124 YVYGPLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWK 168
>sp|Q9I8U0|COX41_THUOB Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Thunnus
obesus PE=2 SV=1
Length = 169
Score = 85.1 bits (209), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 53/168 (31%), Positives = 84/168 (50%), Gaps = 8/168 (4%)
Query: 25 AIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLRE 83
++V ++++ST L G V + AY D P P I Y + + L+E
Sbjct: 8 SLVGKRAISTSVCL---RGGHGVAKVEEYTLPAYFDRRENPLPDICYVQALSPEQQSLKE 64
Query: 84 KEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAF 143
KEKG W ALS EEK LYR SF+Q+FAE + +E+ VG + I + +
Sbjct: 65 KEKGSWAALSNEEKIALYRISFKQSFAEMNK----GSSEWKSVVGGMLFFIGFTGLVVLW 120
Query: 144 LKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
+ + +P T PE + +M+ ++ NP+ G ++ WDYEN +W+
Sbjct: 121 QRKYVYGAVPHTFDPEYKAKELQRMLDMRINPVEGFSAHWDYENKQWK 168
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 77/164 (46%), Gaps = 25/164 (15%)
Query: 232 GHGRNGIA-----AYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYR 285
GHG + AY D P P I Y + + L+EKEKG W ALS EEK LYR
Sbjct: 24 GHGVAKVEEYTLPAYFDRRENPLPDICYVQALSPEQQSLKEKEKGSWAALSNEEKIALYR 83
Query: 286 ASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAF 345
SF+Q+FAE + +E+ VG + I + ++ + + +
Sbjct: 84 ISFKQSFAEMNK----GSSEWKSVVGGMLFFIGFTGLVVL---------------WQRKY 124
Query: 346 FLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
+P T PE + +M+ ++ NP+ G ++ WDYEN +W+
Sbjct: 125 VYGAVPHTFDPEYKAKELQRMLDMRINPVEGFSAHWDYENKQWK 168
>sp|O46581|COX41_THEGE Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Theropithecus gelada GN=COX4I1 PE=3 SV=1
Length = 144
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Query: 47 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
VV + AY D P P + + K + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKSEDFTLPAYVDRRDYPLPDVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61
Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
+++FAE R E+ VG +M ++ + K + PLP T E
Sbjct: 62 KESFAEMNRRS----NEWKTVVGTAMFFFGITALIVMWEKRYVYGPLPQTFDKEWVAMQT 117
Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
+M+ ++ NPI G+ASKWDYE + W+
Sbjct: 118 KRMLDMKVNPIQGLASKWDYEKNEWK 143
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 230 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 288
VV + AY D P P + + K + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKSEDFTLPAYVDRRDYPLPDVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61
Query: 289 RQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLP 348
+++FAE R E+ VG +M IT ++ + K +
Sbjct: 62 KESFAEMNRRS----NEWKTVVGTAMFFFG-ITALIVM--------------WEKRYVYG 102
Query: 349 PLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
PLP T E +M+ ++ NPI G+ASKWDYE + W+
Sbjct: 103 PLPQTFDKEWVAMQTKRMLDMKVNPIQGLASKWDYEKNEWK 143
>sp|O46578|COX41_GORGO Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Gorilla gorilla gorilla GN=COX4I1 PE=3 SV=1
Length = 144
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Query: 47 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
VV + AY D P P + + K + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKSEDFSLPAYMDRRDYPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61
Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
+++FAE R E+ VG +M I + + K + PLP + E
Sbjct: 62 KESFAEMNRGS----NEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQT 117
Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
+M+ ++ NPI G+ASKWDYE + W+
Sbjct: 118 KRMLDMKVNPIQGLASKWDYEKNEWK 143
Score = 75.9 bits (185), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 230 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 288
VV + AY D P P + + K + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKSEDFSLPAYMDRRDYPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61
Query: 289 RQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLP 348
+++FAE R E+ VG +M I + ++ + K +
Sbjct: 62 KESFAEMNRGS----NEWKTVVGGAMFFIGFTALVIM---------------WQKHYVYG 102
Query: 349 PLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
PLP + E +M+ ++ NPI G+ASKWDYE + W+
Sbjct: 103 PLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWK 143
>sp|O46577|COX41_PANTR Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Pan troglodytes GN=COX4I1 PE=3 SV=1
Length = 144
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Query: 47 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
VV + AY D P P + + K + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61
Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
+++FAE R E+ VG +M I + + K + PLP + E
Sbjct: 62 KESFAEMNRGS----NEWKTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKEWVAKQT 117
Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
+M+ ++ NPI G+ASKWDYE + W+
Sbjct: 118 KRMLDMKVNPIQGLASKWDYEKNEWK 143
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 230 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 288
VV + AY D P P + + K + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61
Query: 289 RQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLP 348
+++FAE R E+ VG +M I + ++ + K +
Sbjct: 62 KESFAEMNRGS----NEWKTVVGGAMFFIGFTALVIM---------------WQKHYVYG 102
Query: 349 PLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
PLP + E +M+ ++ NPI G+ASKWDYE + W+
Sbjct: 103 PLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWK 143
>sp|O46580|COX41_HYLAG Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Hylobates agilis GN=COX4I1 PE=3 SV=1
Length = 144
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Query: 47 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
VV + AY D P P + + K+ + L+E EK W++LS +EK LYR F
Sbjct: 2 VVKSEDFSLPAYVDRRDHPLPEVAHVKLLSASQKALKENEKAAWSSLSMDEKVELYRIKF 61
Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
+++FAE R E+ VG +M I + + K + PLP T E
Sbjct: 62 KESFAEMNRGS----NEWKTVVGGAMFFIGFTALIIMWQKHYVYGPLPQTFDKEWVGKQT 117
Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
+M+ ++ NPI G+ASKWDYE + W+
Sbjct: 118 KRMLDMKVNPIQGLASKWDYEKNEWK 143
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 230 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 288
VV + AY D P P + + K+ + L+E EK W++LS +EK LYR F
Sbjct: 2 VVKSEDFSLPAYVDRRDHPLPEVAHVKLLSASQKALKENEKAAWSSLSMDEKVELYRIKF 61
Query: 289 RQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLP 348
+++FAE R E+ VG +M I + ++ + K +
Sbjct: 62 KESFAEMNRGS----NEWKTVVGGAMFFIGFTALIIM---------------WQKHYVYG 102
Query: 349 PLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
PLP T E +M+ ++ NPI G+ASKWDYE + W+
Sbjct: 103 PLPQTFDKEWVGKQTKRMLDMKVNPIQGLASKWDYEKNEWK 143
>sp|O46579|COX41_PONPY Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Pongo pygmaeus GN=COX4I1 PE=3 SV=1
Length = 144
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 73/146 (50%), Gaps = 5/146 (3%)
Query: 47 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
VV ++AY D P P + + K + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKSEDFSLSAYVDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61
Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
+++FAE R E+ VG +M I + + K PLP + E
Sbjct: 62 KESFAEMNRGS----NEWKTVVGGAMFFIGFTALIIMWQKRHVYGPLPQSFDKEWVAKQT 117
Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
+M+ ++ NPI G+ASKWDYE + W+
Sbjct: 118 KRMLDMKVNPIQGLASKWDYEKNEWK 143
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 20/161 (12%)
Query: 230 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 288
VV ++AY D P P + + K + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKSEDFSLSAYVDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61
Query: 289 RQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLP 348
+++FAE R E+ VG +M I + ++ + K
Sbjct: 62 KESFAEMNRGS----NEWKTVVGGAMFFIGFTALIIM---------------WQKRHVYG 102
Query: 349 PLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
PLP + E +M+ ++ NPI G+ASKWDYE + W+
Sbjct: 103 PLPQSFDKEWVAKQTKRMLDMKVNPIQGLASKWDYEKNEWK 143
>sp|O46586|COX41_PERPO Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Perodicticus potto edwarsi GN=COX4I1 PE=3 SV=1
Length = 137
Score = 82.4 bits (202), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 54 GIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEF 112
+ +Y D P P + + K + L+EKEK W+ LS +EK LYR F+++FAE
Sbjct: 2 ALPSYVDRRDYPLPDVAHVKHLSASQKALKEKEKASWSNLSMDEKVELYRIQFKESFAEM 61
Query: 113 TRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQ 172
R E+ VG +M+ I + + K + P+P T P+ KM+ ++
Sbjct: 62 NRGT----NEWKTVVGTAMLFIGFTALIVIWEKRYVYGPIPHTFDPDWVAKQTKKMLDMK 117
Query: 173 WNPITGMASKWDYENDRWR 191
NPI G A+KWDYE W+
Sbjct: 118 VNPIQGFAAKWDYEKQEWK 136
Score = 75.1 bits (183), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 20/154 (12%)
Query: 237 GIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEF 295
+ +Y D P P + + K + L+EKEK W+ LS +EK LYR F+++FAE
Sbjct: 2 ALPSYVDRRDYPLPDVAHVKHLSASQKALKEKEKASWSNLSMDEKVELYRIQFKESFAEM 61
Query: 296 TRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMT 355
R E+ VG +M+ I + +I + K + P+P T
Sbjct: 62 NRGT----NEWKTVVGTAMLFIGFTALIVI---------------WEKRYVYGPIPHTFD 102
Query: 356 PEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
P+ KM+ ++ NPI G A+KWDYE W+
Sbjct: 103 PDWVAKQTKKMLDMKVNPIQGFAAKWDYEKQEWK 136
>sp|O46585|COX41_PITPI Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Pithecia pithecia GN=COX4I1 PE=3 SV=1
Length = 144
Score = 82.0 bits (201), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Query: 47 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
VV + +Y D P P + + + + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKSEDYTLQSYVDRRDYPLPDVAHVRHLSASQKALKEKEKASWSSLSMDEKVELYRIQF 61
Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
+++FAE R E+ VG +M I + K + PLP T E
Sbjct: 62 KESFAEMNRGS----NEWKTVVGAAMFFIGFTAILIMLEKRYVYGPLPHTFDKEWVAMQT 117
Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
+M+ L+ NP+ G+ASKWDYE W+
Sbjct: 118 KRMLDLKVNPVDGLASKWDYEKKEWK 143
Score = 75.5 bits (184), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 230 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 288
VV + +Y D P P + + + + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKSEDYTLQSYVDRRDYPLPDVAHVRHLSASQKALKEKEKASWSSLSMDEKVELYRIQF 61
Query: 289 RQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLP 348
+++FAE R E+ VG +M I I ++ K +
Sbjct: 62 KESFAEMNRGS----NEWKTVVGAAMFFIGFTAILIMLE---------------KRYVYG 102
Query: 349 PLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
PLP T E +M+ L+ NP+ G+ASKWDYE W+
Sbjct: 103 PLPHTFDKEWVAMQTKRMLDLKVNPVDGLASKWDYEKKEWK 143
>sp|O46584|COX41_AOTAZ Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Aotus azarae GN=COX4I1 PE=3 SV=1
Length = 144
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/146 (32%), Positives = 71/146 (48%), Gaps = 5/146 (3%)
Query: 47 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
VV + +Y D P P + + + + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKSEDYALPSYVDRRDYPLPDVAHVRHLSASQKALKEKEKASWSSLSMDEKVELYRIQF 61
Query: 106 RQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTV 165
+++FAE R E+ VG +M I + K + PLP T E
Sbjct: 62 KESFAEMNRGS----NEWKTVVGAAMFFIGFTAILIILEKRYVYGPLPHTFDKEWVAMQT 117
Query: 166 TKMIQLQWNPITGMASKWDYENDRWR 191
+M+ L+ NP+ G+ASKWDY+ W+
Sbjct: 118 KRMLDLKVNPVDGLASKWDYDKKEWK 143
Score = 75.9 bits (185), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 73/161 (45%), Gaps = 20/161 (12%)
Query: 230 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 288
VV + +Y D P P + + + + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKSEDYALPSYVDRRDYPLPDVAHVRHLSASQKALKEKEKASWSSLSMDEKVELYRIQF 61
Query: 289 RQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLP 348
+++FAE R E+ VG +M I I +I K +
Sbjct: 62 KESFAEMNRGS----NEWKTVVGAAMFFIGFTAILIILE---------------KRYVYG 102
Query: 349 PLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
PLP T E +M+ L+ NP+ G+ASKWDY+ W+
Sbjct: 103 PLPHTFDKEWVAMQTKRMLDLKVNPVDGLASKWDYDKKEWK 143
>sp|P10888|COX41_RAT Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Rattus
norvegicus GN=Cox4i1 PE=1 SV=1
Length = 169
Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Query: 25 AIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLRE 83
+++ ++++ST L + VV + +Y D P P + + K+ + L+E
Sbjct: 8 SLIGKRAISTSVCL---RAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKLLSASQKALKE 64
Query: 84 KEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAF 143
KEK W++LS++EK LYR F ++FAE + E+ VGL+M I + +
Sbjct: 65 KEKADWSSLSRDEKVQLYRIQFNESFAEMNKGT----NEWKTVVGLAMFFIGFTALVLIW 120
Query: 144 LKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
K++ P+P T + +M+ ++ NPI G ++KWDY + W+
Sbjct: 121 EKSYVYGPIPHTFDRDWVAMQTKRMLDMKVNPIQGFSAKWDYNKNEWK 168
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 80/169 (47%), Gaps = 22/169 (13%)
Query: 222 LGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEK 280
L HG+ VV + +Y D P P + + K+ + L+EKEK W++LS++EK
Sbjct: 21 LRAHGS--VVKSEDYALPSYVDRRDYPLPDVAHVKLLSASQKALKEKEKADWSSLSRDEK 78
Query: 281 KMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYA 340
LYR F ++FAE + E+ VGL+M I + LI
Sbjct: 79 VQLYRIQFNESFAEMNKGT----NEWKTVVGLAMFFIGFTALVLI--------------- 119
Query: 341 FLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
+ K++ P+P T + +M+ ++ NPI G ++KWDY + W+
Sbjct: 120 WEKSYVYGPIPHTFDRDWVAMQTKRMLDMKVNPIQGFSAKWDYNKNEWK 168
>sp|Q96KJ9|COX42_HUMAN Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Homo
sapiens GN=COX4I2 PE=1 SV=2
Length = 171
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 62/118 (52%), Gaps = 4/118 (3%)
Query: 74 FDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVV 133
+++ L+EKEKG W L+ EK LYR F +TFAE R E+ +G
Sbjct: 57 LNAEEQALKEKEKGSWTQLTHAEKVALYRLQFNETFAEMNRR----SNEWKTVMGCVFFF 112
Query: 134 IAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
I + + + + PP P T+T E + +M+ ++ NP+ G+AS+WDYE +W+
Sbjct: 113 IGFAALVIWWQRVYVFPPKPITLTDERKAQQLQRMLDMKVNPVQGLASRWDYEKKQWK 170
Score = 71.6 bits (174), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 19/133 (14%)
Query: 257 FDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVV 316
+++ L+EKEKG W L+ EK LYR F +TFAE R T + G +
Sbjct: 57 LNAEEQALKEKEKGSWTQLTHAEKVALYRLQFNETFAEMNRRSNEWKT--VMGCVFFFIG 114
Query: 317 IAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITG 376
A + I+ + + + PP P T+T E + +M+ ++ NP+ G
Sbjct: 115 FAALVIW-----------------WQRVYVFPPKPITLTDERKAQQLQRMLDMKVNPVQG 157
Query: 377 MASKWDYENDRWR 389
+AS+WDYE +W+
Sbjct: 158 LASRWDYEKKQWK 170
>sp|P19783|COX41_MOUSE Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Mus
musculus GN=Cox4i1 PE=1 SV=2
Length = 169
Score = 79.7 bits (195), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 46/168 (27%), Positives = 83/168 (49%), Gaps = 8/168 (4%)
Query: 25 AIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLRE 83
+++ ++++ST L + VV Y D P P + + + + L+E
Sbjct: 8 SLIGKRAISTSVCL---RAHGSVVKSEDYAFPTYADRRDYPLPDVAHVTMLSASQKALKE 64
Query: 84 KEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAF 143
KEK W++LS++EK LYR F ++FAE R E+ VG++M I + +
Sbjct: 65 KEKADWSSLSRDEKVQLYRIQFNESFAEMNRGT----NEWKTVVGMAMFFIGFTALVLIW 120
Query: 144 LKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
K++ P+P T + +M+ ++ NPI G ++KWDY+ + W+
Sbjct: 121 EKSYVYGPIPHTFDRDWVAMQTKRMLDMKANPIQGFSAKWDYDKNEWK 168
Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 78/169 (46%), Gaps = 22/169 (13%)
Query: 222 LGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEK 280
L HG+ VV Y D P P + + + + L+EKEK W++LS++EK
Sbjct: 21 LRAHGS--VVKSEDYAFPTYADRRDYPLPDVAHVTMLSASQKALKEKEKADWSSLSRDEK 78
Query: 281 KMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYA 340
LYR F ++FAE R E+ VG++M I + LI
Sbjct: 79 VQLYRIQFNESFAEMNRGT----NEWKTVVGMAMFFIGFTALVLI--------------- 119
Query: 341 FLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
+ K++ P+P T + +M+ ++ NPI G ++KWDY+ + W+
Sbjct: 120 WEKSYVYGPIPHTFDRDWVAMQTKRMLDMKANPIQGFSAKWDYDKNEWK 168
>sp|P00423|COX41_BOVIN Cytochrome c oxidase subunit 4 isoform 1, mitochondrial OS=Bos
taurus GN=COX4I1 PE=1 SV=1
Length = 169
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 78/169 (46%), Gaps = 17/169 (10%)
Query: 36 TRLFPFTGNRE------VVGHGR------NGIAAYGDNVLCPFPAIRY-KVFDSDLLLLR 82
TR+F G R V HG + +Y D P P + + K + L+
Sbjct: 4 TRVFSLIGRRAISTSVCVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALK 63
Query: 83 EKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYA 142
EKEK W++LS +EK LYR F+++FAE R E+ VG +M I +
Sbjct: 64 EKEKASWSSLSIDEKVELYRLKFKESFAEMNR----STNEWKTVVGAAMFFIGFTALLLI 119
Query: 143 FLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
+ K + P+P T E +M+ ++ PI G ++KWDY+ + W+
Sbjct: 120 WEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWK 168
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 76/166 (45%), Gaps = 22/166 (13%)
Query: 225 HGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKML 283
HG+ VV + +Y D P P + + K + L+EKEK W++LS +EK L
Sbjct: 24 HGS--VVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVEL 81
Query: 284 YRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLK 343
YR F+++FAE R E+ VG +M I + LI + K
Sbjct: 82 YRLKFKESFAEMNR----STNEWKTVVGAAMFFIGFTALLLI---------------WEK 122
Query: 344 AFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
+ P+P T E +M+ ++ PI G ++KWDY+ + W+
Sbjct: 123 HYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWK 168
>sp|Q9TTT8|COX41_RABIT Cytochrome c oxidase subunit 4 isoform 1, mitochondrial
OS=Oryctolagus cuniculus GN=COX4I1 PE=2 SV=1
Length = 169
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 78/169 (46%), Gaps = 17/169 (10%)
Query: 36 TRLFPFTGNR------------EVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLR 82
TRL F+G+R VV + +Y D P P + + K + L+
Sbjct: 4 TRLLSFSGSRAISTSFCLRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKQLSAGQKALK 63
Query: 83 EKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYA 142
EKEK W +L+++EK LYR F ++FAE R E+ VG ++ I +
Sbjct: 64 EKEKAPWGSLTRDEKVELYRIQFNESFAEMNR----GTNEWKTVVGTALFFIGFTALILI 119
Query: 143 FLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
+ K + P+P T E +M+ ++ +PI G ++KWDY + WR
Sbjct: 120 WEKHYVYGPIPHTFDKEWVAMQTKRMLDMKVSPIQGFSAKWDYNKNEWR 168
Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 48/169 (28%), Positives = 76/169 (44%), Gaps = 22/169 (13%)
Query: 222 LGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEK 280
L HG+ VV + +Y D P P + + K + L+EKEK W +L+++EK
Sbjct: 21 LRAHGS--VVKSEDYALPSYVDRRDYPLPDVAHVKQLSAGQKALKEKEKAPWGSLTRDEK 78
Query: 281 KMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYA 340
LYR F ++FAE R E+ VG ++ I + LI
Sbjct: 79 VELYRIQFNESFAEMNR----GTNEWKTVVGTALFFIGFTALILI--------------- 119
Query: 341 FLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
+ K + P+P T E +M+ ++ +PI G ++KWDY + WR
Sbjct: 120 WEKHYVYGPIPHTFDKEWVAMQTKRMLDMKVSPIQGFSAKWDYNKNEWR 168
>sp|P80971|COX42_THUOB Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Thunnus
obesus PE=1 SV=2
Length = 176
Score = 73.2 bits (178), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 68/138 (49%), Gaps = 11/138 (7%)
Query: 58 YGDNVLCPFPAIRYKVFDSDLLL----LREKEKGHWNALSKEEKKMLYRASFRQTFAEFT 113
Y D + P P YK DL L++KEKG W LSKEEK LYR F QT++E
Sbjct: 46 YWDRLDTPLPDRPYK---EDLTAADKSLKQKEKGPWGQLSKEEKIALYRLMFCQTYSEMK 102
Query: 114 RHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQW 173
+ P +E+ G + + + + + PP P T E + +M+ ++
Sbjct: 103 Q----PSSEWKTVFGGIFIFLGFTGLVVWWQALYVYPPRPRTFDDEWKAKQLKRMLDMRV 158
Query: 174 NPITGMASKWDYENDRWR 191
NPI G ++KWDYE +W+
Sbjct: 159 NPIEGFSAKWDYEKGQWK 176
Score = 72.0 bits (175), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 79/175 (45%), Gaps = 27/175 (15%)
Query: 219 SGRLGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLL----LREKEKGHWNA 274
S R+ H + EV Y D + P P YK DL L++KEKG W
Sbjct: 25 SARMASH-DLEVAESVDMSKPLYWDRLDTPLPDRPYK---EDLTAADKSLKQKEKGPWGQ 80
Query: 275 LSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTV 334
LSKEEK LYR F QT++E + P +E+ V I IFL L
Sbjct: 81 LSKEEKIALYRLMFCQTYSEMKQ----PSSEW-------KTVFGGIFIFLGFTGLVVWWQ 129
Query: 335 SLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 389
+L+ Y PP P T E + +M+ ++ NPI G ++KWDYE +W+
Sbjct: 130 ALYVY--------PPRPRTFDDEWKAKQLKRMLDMRVNPIEGFSAKWDYEKGQWK 176
>sp|Q91W29|COX42_MOUSE Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Mus
musculus GN=Cox4i2 PE=2 SV=1
Length = 172
Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 81 LREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFY 140
L+EKEKG W LS+ EK LYR F +TFAE + E+ +G I +
Sbjct: 65 LKEKEKGSWTQLSQAEKVALYRLQFHETFAEMN----HRSNEWKTVMGCVFFFIGFTALV 120
Query: 141 YAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
+ + + P T+T E + +++ ++ NPI G+A+ WDYE W+
Sbjct: 121 IWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLAAHWDYEKKEWK 171
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 264 LREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIF 323
L+EKEKG W LS+ EK LYR F +TFAE + E+ +G +F
Sbjct: 65 LKEKEKGSWTQLSQAEKVALYRLQFHETFAEMN----HRSNEWKTVMGC---------VF 111
Query: 324 LITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDY 383
F T + ++ + + P T+T E + +++ ++ NPI G+A+ WDY
Sbjct: 112 FFIGF----TALVIWWQ--RVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLAAHWDY 165
Query: 384 ENDRWR 389
E W+
Sbjct: 166 EKKEWK 171
>sp|Q91Y94|COX42_RAT Cytochrome c oxidase subunit 4 isoform 2, mitochondrial OS=Rattus
norvegicus GN=Cox4i2 PE=2 SV=1
Length = 172
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 56/111 (50%), Gaps = 4/111 (3%)
Query: 81 LREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFY 140
L+EKEKG W LS+ EK LYR F +TFAE + E+ +G I +
Sbjct: 65 LKEKEKGSWAQLSQAEKVALYRLQFHETFAEMN----HRSNEWKTVMGCVFFFIGFTALV 120
Query: 141 YAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
+ + + P T+T E + +++ ++ NPI G+++ WDYE W+
Sbjct: 121 IWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLSAHWDYEKKEWK 171
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 264 LREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIF 323
L+EKEKG W LS+ EK LYR F +TFAE + E+ +G +F
Sbjct: 65 LKEKEKGSWAQLSQAEKVALYRLQFHETFAEMN----HRSNEWKTVMGC---------VF 111
Query: 324 LITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDY 383
F T + ++ + + P T+T E + +++ ++ NPI G+++ WDY
Sbjct: 112 FFIGF----TALVIWWQ--RVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLSAHWDY 165
Query: 384 ENDRWR 389
E W+
Sbjct: 166 EKKEWK 171
>sp|O46582|COX41_SAISC Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragments)
OS=Saimiri sciureus GN=COX4I1 PE=3 SV=2
Length = 124
Score = 55.8 bits (133), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 25/136 (18%)
Query: 57 AYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRH 115
+Y D P P + + + + L+EKEK W++LS +EK +T
Sbjct: 12 SYVDRRDYPLPDVAHVRHLSASQKALKEKEKASWSSLSMDEK-------VEKTV------ 58
Query: 116 GAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNP 175
VG +M I + K + PLP T E +M+ L+ NP
Sbjct: 59 -----------VGAAMFFIGFTAILVILEKRYVYGPLPHTFDKEWVAMQTKRMLDLKMNP 107
Query: 176 ITGMASKWDYENDRWR 191
I G+ASKWDYE W+
Sbjct: 108 IDGLASKWDYEKKEWK 123
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 59/151 (39%), Gaps = 40/151 (26%)
Query: 240 AYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRH 298
+Y D P P + + + + L+EKEK W++LS +EK +T
Sbjct: 12 SYVDRRDYPLPDVAHVRHLSASQKALKEKEKASWSSLSMDEK-------VEKTV------ 58
Query: 299 GAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEG 358
VG +M I I +I K + PLP T E
Sbjct: 59 -----------VGAAMFFIGFTAILVILE---------------KRYVYGPLPHTFDKEW 92
Query: 359 WENTVTKMIQLQWNPITGMASKWDYENDRWR 389
+M+ L+ NPI G+ASKWDYE W+
Sbjct: 93 VAMQTKRMLDLKMNPIDGLASKWDYEKKEWK 123
>sp|O46587|COX41_MANSP Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Mandrillus sphinx GN=COX4I1 PE=3 SV=1
Length = 99
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 43/82 (52%), Gaps = 5/82 (6%)
Query: 57 AYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRH 115
AY D P P + + K + L+EKEK W++LS +EK LYR F+++FAE R
Sbjct: 12 AYVDRRDYPLPDVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRR 71
Query: 116 GAYPDTEYLGSVGLSMVVIAVS 137
E+ VG +M I ++
Sbjct: 72 S----NEWKTVVGTAMFFIGIT 89
Score = 47.8 bits (112), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 240 AYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRH 298
AY D P P + + K + L+EKEK W++LS +EK LYR F+++FAE R
Sbjct: 12 AYVDRRDYPLPDVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNRR 71
Query: 299 GAYPDTEYLGGVGLSMVVIAEITIFLI 325
E+ VG +M I IT +I
Sbjct: 72 S----NEWKTVVGTAMFFIG-ITALVI 93
>sp|O46588|COX41_TRACR Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Trachypithecus cristatus GN=COX4I1 PE=3 SV=1
Length = 99
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 47 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 105
VV + AY D P P + + K + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKREDFSLPAYVDRRDYPLPDVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61
Query: 106 RQTFAEFTR 114
++TFAE R
Sbjct: 62 KETFAEMNR 70
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 230 VVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASF 288
VV + AY D P P + + K + L+EKEK W++LS +EK LYR F
Sbjct: 2 VVKREDFSLPAYVDRRDYPLPDVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKF 61
Query: 289 RQTFAEFTR 297
++TFAE R
Sbjct: 62 KETFAEMNR 70
>sp|P06810|COX5_NEUCR Cytochrome c oxidase polypeptide 5, mitochondrial OS=Neurospora
crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 /
DSM 1257 / FGSC 987) GN=cya-4 PE=3 SV=2
Length = 171
Score = 45.4 bits (106), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 13/108 (12%)
Query: 79 LLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAY---PDTEYLGSVGLSMVVIA 135
+ LR++ KG+W L+ +EKK Y + F HG P E + ++ +
Sbjct: 58 MALRDRMKGNWADLTLQEKKAAY-------YIAFGPHGPRALPPPGEQKKVLAYTVAGVF 110
Query: 136 VSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQ-WNPITGMASK 182
+S +A ++AF PP PATMT E W+ + ++ Q +P+TG+ S+
Sbjct: 111 LSFVIFATMRAFAKPP-PATMTKE-WQEATNEFLKAQKSDPLTGLTSE 156
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 55/120 (45%), Gaps = 22/120 (18%)
Query: 262 LLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEIT 321
+ LR++ KG+W L+ +EKK Y + F HG P G ++
Sbjct: 58 MALRDRMKGNWADLTLQEKKAAY-------YIAFGPHG--PRALPPPGEQKKVLAYTVAG 108
Query: 322 IFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQ-WNPITGMASK 380
+FL S +A ++AF PP P TMT E W+ + ++ Q +P+TG+ S+
Sbjct: 109 VFL----------SFVIFATMRAFAKPP-PATMTKE-WQEATNEFLKAQKSDPLTGLTSE 156
>sp|Q95283|COX41_PIG Cytochrome c oxidase subunit 4 isoform 1, mitochondrial (Fragment)
OS=Sus scrofa GN=COX4I1 PE=3 SV=1
Length = 97
Score = 44.7 bits (104), Expect = 0.001, Method: Composition-based stats.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 13/92 (14%)
Query: 36 TRLFPFTGNRE------VVGHGRN------GIAAYGDNVLCPFPAIRY-KVFDSDLLLLR 82
TR+F G R V HG + Y D P P + + K + +
Sbjct: 4 TRVFNLIGRRAISTSVCVRAHGSXVKSEDYALPVYVDRRDYPLPDVAHVKNLSASQKAXK 63
Query: 83 EKEKGHWNALSKEEKKMLYRASFRQTFAEFTR 114
EKEK W++LS +EK LYR F ++FAE R
Sbjct: 64 EKEKASWSSLSMDEKVELYRLKFNESFAEMNR 95
Score = 42.4 bits (98), Expect = 0.007, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 237 GIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEF 295
+ Y D P P + + K + +EKEK W++LS +EK LYR F ++FAE
Sbjct: 34 ALPVYVDRRDYPLPDVAHVKNLSASQKAXKEKEKASWSSLSMDEKVELYRLKFNESFAEM 93
Query: 296 TR 297
R
Sbjct: 94 NR 95
>sp|Q9P2S6|ANKY1_HUMAN Ankyrin repeat and MYND domain-containing protein 1 OS=Homo sapiens
GN=ANKMY1 PE=2 SV=2
Length = 941
Score = 36.2 bits (82), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 66/155 (42%), Gaps = 23/155 (14%)
Query: 91 ALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVS---------LFYY 141
ALS E++ +R T R GA P+ L V + ++ +AV L +
Sbjct: 517 ALSMIERRKRWR-----TIKLLLRRGADPN---LCCVPMQVLFLAVKAGDVDGVRLLLEH 568
Query: 142 AFLKAFFLPPLPATMTPEGWENTV-----TKMIQLQWNPITGMASKWDYENDRWRPGFKP 196
PP +T+TP + ++++L + IT + +K E+D ++PG
Sbjct: 569 GARTDICFPPQLSTLTPLHIAAALPGEEGVQIVELLLHAITDVDAKASDEDDTYKPGKLD 628
Query: 197 CVPVLLRLSQGILPPSPPHHHDSGRLGEHGNREVV 231
+P L+LS PP + D+ L E G R +
Sbjct: 629 LLPSSLKLSNEPGPPQAYYSTDTA-LPEEGGRTAL 662
>sp|O74988|COX5_SCHPO Cytochrome c oxidase polypeptide 5, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=cox5 PE=3 SV=2
Length = 186
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 50/108 (46%), Gaps = 6/108 (5%)
Query: 75 DSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVI 134
D + L ++K W LS EEKK Y +F + H T + G+V + + I
Sbjct: 64 DGLITDLYARQKQPWTTLSIEEKKAAYWIAFGEHGPRAFSH-ISQKTVFWGTV--AGLTI 120
Query: 135 AVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASK 182
V LF +A P P TMT E E + M + + NPI+G AS+
Sbjct: 121 GVVLFGLIRTQA---APSPRTMTREWQEKSNEYMKENKINPISGEASE 165
>sp|Q84W41|GLR36_ARATH Glutamate receptor 3.6 OS=Arabidopsis thaliana GN=GLR3.6 PE=2 SV=1
Length = 903
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 11/79 (13%)
Query: 2 VLRFSHDEPTPSYPRNPGWI--NRHAIVQQKSVSTLTRLFPFTGNREVVG------HGRN 53
+L FS +PT S + P +I +++ + Q +++ + + F G REVV +GRN
Sbjct: 121 ILSFSATDPTMSPLQFPFFIRTSQNDLFQMAAIADIVQ---FYGWREVVAIYGDDDYGRN 177
Query: 54 GIAAYGDNVLCPFPAIRYK 72
G+AA GD + I YK
Sbjct: 178 GVAALGDRLSEKRCRISYK 196
>sp|Q5RBD8|CH040_PONAB UPF0697 protein C8orf40 homolog OS=Pongo abelii PE=3 SV=3
Length = 107
Score = 32.3 bits (72), Expect = 6.3, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 111 EFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYA------FLKAFFLPPLPATMTPEGWENT 164
++T H A+ + +V L +++++ LF YA ++ F +PP T++ + +T
Sbjct: 15 DYTVHEAWNEAT---NVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETLSEPNFYDT 71
Query: 165 VTKMIQLQWNPITGMASKWDYE 186
++K+ Q + ++ K+DY+
Sbjct: 72 ISKIRLRQQLEMYSISRKYDYQ 93
>sp|Q96E16|CH040_HUMAN UPF0697 protein C8orf40 OS=Homo sapiens GN=C8orf40 PE=2 SV=2
Length = 107
Score = 32.3 bits (72), Expect = 6.3, Method: Composition-based stats.
Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 9/82 (10%)
Query: 111 EFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYA------FLKAFFLPPLPATMTPEGWENT 164
++T H A+ + +V L +++++ LF YA ++ F +PP T++ + +T
Sbjct: 15 DYTVHEAWNEAT---NVYLIVILVSFGLFMYAKRNKRRIMRIFSVPPTEETLSEPNFYDT 71
Query: 165 VTKMIQLQWNPITGMASKWDYE 186
++K+ Q + ++ K+DY+
Sbjct: 72 ISKIRLRQQLEMYSISRKYDYQ 93
>sp|O93980|COX5_ASPNG Cytochrome c oxidase polypeptide 5, mitochondrial OS=Aspergillus
niger GN=cox5 PE=3 SV=1
Length = 197
Score = 32.0 bits (71), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 20/119 (16%)
Query: 262 LLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEIT 321
+ LR++ K W+ ++ +EKK Y + F HG P + G L
Sbjct: 83 MQLRDRMKVDWHQMTLQEKKAAY-------WISFGPHG--PRSVPPKGENLK-------- 125
Query: 322 IFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASK 380
IF L+ + +FY L F P P TMT E E + Q + NPI G++++
Sbjct: 126 IFFKVAQLTLVSFGIFYVIHL---FAKPQPKTMTKEWQEASNEYAKQEKINPIYGISAE 181
Score = 32.0 bits (71), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 15/109 (13%)
Query: 79 LLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAY---PDTEYLGSV--GLSMVV 133
+ LR++ K W+ ++ +EKK Y + F HG P E L + +
Sbjct: 83 MQLRDRMKVDWHQMTLQEKKAAY-------WISFGPHGPRSVPPKGENLKIFFKVAQLTL 135
Query: 134 IAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASK 182
++ +FY L F P P TMT E E + Q + NPI G++++
Sbjct: 136 VSFGIFYVIHL---FAKPQPKTMTKEWQEASNEYAKQEKINPIYGISAE 181
>sp|O94545|KA113_SCHPO Importin beta-like protein kap113 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=kap113 PE=3 SV=1
Length = 983
Score = 32.0 bits (71), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 13/90 (14%)
Query: 240 AYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQT-----FAE 294
AYGD ++ PF + Y VF E K A+ ++ + + Q FA+
Sbjct: 433 AYGDIIVSPFKDMIYSVF--------ECPKTLTQAVQQDTLISSFGVGYTQLKSIFPFAK 484
Query: 295 FTRHGAYPDTEYLGGVGLSMVVIAEITIFL 324
+ + A P+ + +G+S V I IFL
Sbjct: 485 WLQEAAVPNMASINDIGISRVYRRRIAIFL 514
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.448
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 170,929,066
Number of Sequences: 539616
Number of extensions: 7455236
Number of successful extensions: 15125
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 15025
Number of HSP's gapped (non-prelim): 69
length of query: 415
length of database: 191,569,459
effective HSP length: 120
effective length of query: 295
effective length of database: 126,815,539
effective search space: 37410584005
effective search space used: 37410584005
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)