Query psy2997
Match_columns 415
No_of_seqs 275 out of 459
Neff 3.7
Searched_HMMs 46136
Date Fri Aug 16 22:49:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2997.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2997hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4075|consensus 100.0 6.5E-58 1.4E-62 414.7 11.6 166 22-191 2-167 (167)
2 PF02936 COX4: Cytochrome c ox 100.0 1E-57 2.2E-62 405.6 10.9 142 46-191 1-142 (142)
3 PF02936 COX4: Cytochrome c ox 100.0 8.2E-56 1.8E-60 393.4 6.0 142 229-389 1-142 (142)
4 KOG4075|consensus 100.0 7.3E-55 1.6E-59 394.8 7.9 150 221-389 18-167 (167)
5 cd00922 Cyt_c_Oxidase_IV Cytoc 100.0 4.5E-54 9.7E-59 379.9 12.3 136 46-185 1-136 (136)
6 cd00922 Cyt_c_Oxidase_IV Cytoc 100.0 6.3E-52 1.4E-56 366.3 8.2 136 229-383 1-136 (136)
7 PF06592 DUF1138: Protein of u 92.7 0.15 3.2E-06 42.2 3.8 47 124-170 2-51 (73)
8 PF06592 DUF1138: Protein of u 91.4 0.12 2.6E-06 42.7 1.9 30 339-368 21-51 (73)
9 PF13239 2TM: 2TM domain 52.6 32 0.00069 28.0 4.9 38 129-170 45-82 (83)
10 PF15176 LRR19-TM: Leucine-ric 48.2 24 0.00051 31.2 3.6 28 119-146 13-40 (102)
11 PF06945 DUF1289: Protein of u 47.0 9.6 0.00021 29.0 1.0 19 84-102 25-43 (51)
12 PF06945 DUF1289: Protein of u 44.5 11 0.00024 28.7 0.9 19 267-285 25-43 (51)
13 COG4472 Uncharacterized protei 26.4 12 0.00026 32.0 -1.5 18 46-63 41-58 (88)
14 PF11216 DUF3012: Protein of u 26.3 29 0.00063 24.9 0.6 13 79-91 8-20 (32)
15 PF04689 S1FA: DNA binding pro 21.0 1.8E+02 0.0039 24.1 4.2 44 314-368 18-62 (69)
16 COG5547 Small integral membran 20.5 62 0.0013 26.3 1.5 22 121-142 28-49 (62)
No 1
>KOG4075|consensus
Probab=100.00 E-value=6.5e-58 Score=414.66 Aligned_cols=166 Identities=37% Similarity=0.614 Sum_probs=154.6
Q ss_pred hhhhhhhhcccccccccccCcCCCeeeecccCCcccccccCCCCCCCCcccccchHHHHHHHHhcCChhccCHHHHHHHh
Q psy2997 22 NRHAIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLY 101 (415)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~ig~ReVVG~G~ng~p~Y~Dr~d~P~Pairf~E~t~~i~aLrEKEKGdWk~LS~eEKKALY 101 (415)
||++..+..-......++++++.|++||+|+||+|+|+||+|+|+|++|++|+++++++||||||+||++||.|||||||
T Consensus 2 l~~~~ts~vg~~~~~~~~~~~a~~~~vg~~~~~~p~y~Drrd~pmP~~~~~e~~~~~~aL~eKek~~Wk~LS~~EKkalY 81 (167)
T KOG4075|consen 2 LRTRFTSLVGGVAITGTRDKAAKRQLVGYGDNGLPIYLDRRDYPMPAIRFRELSAEIKALREKEKAPWKQLSTEEKKALY 81 (167)
T ss_pred cchhHhhhccccceeecchhhhcccccccccccCchhhccccCCCcchhhhcccHHHHHHHHHhcCChhhcCHHHHHHHH
Confidence 34444433222334556788999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccchHhhhcCCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCCCCccccc
Q psy2997 102 RASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMAS 181 (415)
Q Consensus 102 riSF~qTfAE~~~hGP~ptGEWK~V~ggvl~~i~is~~lf~~~r~~vypp~P~Tfs~EWqeAq~ermi~~k~NPItG~SS 181 (415)
|||||||||||++ ++||||+|||+.++|+|+++++.+|++.+||||.|+||++|||+||+|||||+++|||+|++|
T Consensus 82 risF~et~ae~~~----~~~ewKtv~g~~~~f~Gl~~~v~l~~~v~vy~~~P~Tf~~Ewq~kq~erml~~~~NPi~Glas 157 (167)
T KOG4075|consen 82 RISFGETFAERNR----GSNEWKTVFGVAGFFLGLTISVILFGKVRVYGPLPKTFNKEWQEKQLERMLDLKINPIGGLAS 157 (167)
T ss_pred HHHhccccccccC----CCCcccchhhHHHHHHHHHHHHHHHHhheecCCCCcchhHHHHHHHHHHHHHcccCCccCccc
Confidence 9999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccc
Q psy2997 182 KWDYENDRWR 191 (415)
Q Consensus 182 kWDYe~k~WK 191 (415)
+||||+|+||
T Consensus 158 ~wdye~k~wK 167 (167)
T KOG4075|consen 158 KWDYEEKKWK 167 (167)
T ss_pred ccChhhhccC
Confidence 9999999998
No 2
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=100.00 E-value=1e-57 Score=405.63 Aligned_cols=142 Identities=39% Similarity=0.656 Sum_probs=113.7
Q ss_pred eeeecccCCcccccccCCCCCCCCcccccchHHHHHHHHhcCChhccCHHHHHHHhhhhcccchHhhhcCCCCCCCCccc
Q psy2997 46 EVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLG 125 (415)
Q Consensus 46 eVVG~G~ng~p~Y~Dr~d~P~Pairf~E~t~~i~aLrEKEKGdWk~LS~eEKKALYriSF~qTfAE~~~hGP~ptGEWK~ 125 (415)
||||+|.||.|+|+|+.++|+|++||+++++++++|||||||||++||+|||||||||||||||+||++ |+||||+
T Consensus 1 ~~v~~~~~s~p~y~d~~~~w~p~~~~~~~~~~~~~LkeKekg~Wk~LS~eEKkalY~isFg~~g~r~~~----~~gewk~ 76 (142)
T PF02936_consen 1 EVVGYGANSNPSYVDREDRWLPMPRFQEQTEIIEALKEKEKGDWKKLSLEEKKALYRISFGQTGPRMKA----PTGEWKK 76 (142)
T ss_dssp ----GGGTTS-----BTTBSS-SS---S--HHHHHHHHHTTS-GGGS-HHHHHHHHHHH-SS-HHHHT-------SHHHH
T ss_pred CccccccCCCCcccchhcCCCCCcchhhhHHHHHHHHHHHhCCHhhCCHHHHHHHHHhhhcCccccccc----CCcchHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccccCCCccc
Q psy2997 126 SVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191 (415)
Q Consensus 126 V~ggvl~~i~is~~lf~~~r~~vypp~P~Tfs~EWqeAq~ermi~~k~NPItG~SSkWDYe~k~WK 191 (415)
|+++++++|++|+++|+++|+||+||+|+|||+|||+||+||||+|++|||+|+||+|||+||+||
T Consensus 77 v~~~~~~~i~~s~~l~~~~r~~~~~~~P~T~~~Ew~ea~~~~m~~~~~nPi~G~ss~wdy~~~~wk 142 (142)
T PF02936_consen 77 VFGGVFIFIGFSVLLFIWQRSYVYPPLPHTFSKEWQEAQNERMLDMKVNPITGFSSKWDYEKNEWK 142 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----GGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEE-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHcCCCCCCCCcCCcCCCCCcCC
Confidence 999999999999999999999999999999999999999999999999999999999999999998
No 3
>PF02936 COX4: Cytochrome c oxidase subunit IV; InterPro: IPR004203 Cytochrome c oxidase, a 13 sub-unit complex (1.9.3.1 from EC) is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of cytochrome c oxidase subunit IV. The Dictyostelium discoideum (Slime mould) member of this family is called COX VI. The Saccharomyces cerevisiae protein YGX6_YEAST appears to be the yeast COX IV subunit.; GO: 0004129 cytochrome-c oxidase activity; PDB: 3ABK_Q 3AG1_Q 3ASN_Q 1OCZ_D 2EIN_Q 2OCC_D 2YBB_O 3AG3_D 1OCO_Q 1V55_Q ....
Probab=100.00 E-value=8.2e-56 Score=393.40 Aligned_cols=142 Identities=39% Similarity=0.652 Sum_probs=112.9
Q ss_pred eeeeccccccccccccCCCCCCCCccccCChHHHHHHHHhcCChhccCHHHHHHHhhhhccccccccccCCCCCCCCcce
Q psy2997 229 EVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLG 308 (415)
Q Consensus 229 evvg~g~ng~p~Y~D~~d~P~Pair~k~~~~~i~aLreKeKgdWk~LS~eEKKalYriSF~qt~ae~~~~~~~p~gewk~ 308 (415)
||||+|.||.|+|.|+.++|+|++||+++++++++|||||||||++||+|||||||||||||||||+++ |+||||+
T Consensus 1 ~~v~~~~~s~p~y~d~~~~w~p~~~~~~~~~~~~~LkeKekg~Wk~LS~eEKkalY~isFg~~g~r~~~----~~gewk~ 76 (142)
T PF02936_consen 1 EVVGYGANSNPSYVDREDRWLPMPRFQEQTEIIEALKEKEKGDWKKLSLEEKKALYRISFGQTGPRMKA----PTGEWKK 76 (142)
T ss_dssp ----GGGTTS-----BTTBSS-SS---S--HHHHHHHHHTTS-GGGS-HHHHHHHHHHH-SS-HHHHT-------SHHHH
T ss_pred CccccccCCCCcccchhcCCCCCcchhhhHHHHHHHHHHHhCCHhhCCHHHHHHHHHhhhcCccccccc----CCcchHH
Confidence 799999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eeeeeeeeehhhhhhhhhcccccchhHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHccCCCCcccccccccccCcc
Q psy2997 309 GVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRW 388 (415)
Q Consensus 309 v~g~~~~~i~~i~~~l~~~~~~~~~~s~~~~~~~r~~~~~p~P~Tmt~Ewqea~~erm~~~k~NPItG~SSkwdYe~~~W 388 (415)
|+|+++++|+ +|+++|+++|+|++||+|+|||+||||||+||||++++|||+|+||+||||||+|
T Consensus 77 v~~~~~~~i~---------------~s~~l~~~~r~~~~~~~P~T~~~Ew~ea~~~~m~~~~~nPi~G~ss~wdy~~~~w 141 (142)
T PF02936_consen 77 VFGGVFIFIG---------------FSVLLFIWQRSYVYPPLPHTFSKEWQEAQNERMLDMKVNPITGFSSKWDYEKNEW 141 (142)
T ss_dssp HHHHHHHHHH---------------HHHHHHHHHHHHT-----GGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEE
T ss_pred HHHHHHHHHH---------------HHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHHHHcCCCCCCCCcCCcCCCCCcC
Confidence 9999999988 9999999999999999999999999999999999999999999999999999999
Q ss_pred c
Q psy2997 389 R 389 (415)
Q Consensus 389 k 389 (415)
|
T Consensus 142 k 142 (142)
T PF02936_consen 142 K 142 (142)
T ss_dssp -
T ss_pred C
Confidence 7
No 4
>KOG4075|consensus
Probab=100.00 E-value=7.3e-55 Score=394.82 Aligned_cols=150 Identities=40% Similarity=0.689 Sum_probs=144.6
Q ss_pred ccCCcCCceeeeccccccccccccCCCCCCCCccccCChHHHHHHHHhcCChhccCHHHHHHHhhhhccccccccccCCC
Q psy2997 221 RLGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGA 300 (415)
Q Consensus 221 ~~~~~g~revvg~g~ng~p~Y~D~~d~P~Pair~k~~~~~i~aLreKeKgdWk~LS~eEKKalYriSF~qt~ae~~~~~~ 300 (415)
..++++.|++||+|+||.|+|+||+|+|+|+||+++.++++++||||||+||++||.||||||||||||||++||++
T Consensus 18 ~~~~~a~~~~vg~~~~~~p~y~Drrd~pmP~~~~~e~~~~~~aL~eKek~~Wk~LS~~EKkalYrisF~et~ae~~~--- 94 (167)
T KOG4075|consen 18 TRDKAAKRQLVGYGDNGLPIYLDRRDYPMPAIRFRELSAEIKALREKEKAPWKQLSTEEKKALYRISFGETFAERNR--- 94 (167)
T ss_pred cchhhhcccccccccccCchhhccccCCCcchhhhcccHHHHHHHHHhcCChhhcCHHHHHHHHHHHhccccccccC---
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcceeeeeeeeeehhhhhhhhhcccccchhHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHccCCCCcccccc
Q psy2997 301 YPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASK 380 (415)
Q Consensus 301 ~p~gewk~v~g~~~~~i~~i~~~l~~~~~~~~~~s~~~~~~~r~~~~~p~P~Tmt~Ewqea~~erm~~~k~NPItG~SSk 380 (415)
+.+|||+++|+.++|+| +++++.+|++.++|+|+|+||++|||++|+||||++++|||+|+||+
T Consensus 95 -~~~ewKtv~g~~~~f~G---------------l~~~v~l~~~v~vy~~~P~Tf~~Ewq~kq~erml~~~~NPi~Glas~ 158 (167)
T KOG4075|consen 95 -GSNEWKTVFGVAGFFLG---------------LTISVILFGKVRVYGPLPKTFNKEWQEKQLERMLDLKINPIGGLASK 158 (167)
T ss_pred -CCCcccchhhHHHHHHH---------------HHHHHHHHHhheecCCCCcchhHHHHHHHHHHHHHcccCCccCcccc
Confidence 99999999999999999 67777788888899999999999999999999999999999999999
Q ss_pred cccccCccc
Q psy2997 381 WDYENDRWR 389 (415)
Q Consensus 381 wdYe~~~Wk 389 (415)
||||||+||
T Consensus 159 wdye~k~wK 167 (167)
T KOG4075|consen 159 WDYEEKKWK 167 (167)
T ss_pred cChhhhccC
Confidence 999999998
No 5
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=100.00 E-value=4.5e-54 Score=379.93 Aligned_cols=136 Identities=41% Similarity=0.694 Sum_probs=134.7
Q ss_pred eeeecccCCcccccccCCCCCCCCcccccchHHHHHHHHhcCChhccCHHHHHHHhhhhcccchHhhhcCCCCCCCCccc
Q psy2997 46 EVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLG 125 (415)
Q Consensus 46 eVVG~G~ng~p~Y~Dr~d~P~Pairf~E~t~~i~aLrEKEKGdWk~LS~eEKKALYriSF~qTfAE~~~hGP~ptGEWK~ 125 (415)
||||+|.||.|+|+|+.++|+|++||+|+++++++|||||||||++||+||||||||+|||||++||++ |+||||+
T Consensus 1 ~~~~~~~~s~p~y~d~~~~p~p~~~~~e~~~~~~~Lrekek~dW~~LT~~EKkAlY~isfg~~~~e~~~----~~~ewk~ 76 (136)
T cd00922 1 EVVGYGANSLPTYADIPDRPLPMIRFRELSAEIKALREKEKGDWKQLTLEEKKALYRISFGETGPEMNA----PTGEWKT 76 (136)
T ss_pred CcccccccCCccccCCCCCCCCcCccccchHHHHHHHHHhhCCHhhCCHHHHhhHhhhhhccccccccC----CCccHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCCCCccccccccc
Q psy2997 126 SVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDY 185 (415)
Q Consensus 126 V~ggvl~~i~is~~lf~~~r~~vypp~P~Tfs~EWqeAq~ermi~~k~NPItG~SSkWDY 185 (415)
|+++++++|++|+++|+++|+|+|+|+|+|||+|||+||+|||+++|+|||||+||+|||
T Consensus 77 v~~~~~~~i~~s~~~~~~~r~~~~~~~P~T~t~Ewqea~~er~~~~~~NPitG~ss~~dy 136 (136)
T cd00922 77 VFGGVLAFIGITGVIFGLQRAFVYGPKPHTFTEEWQEAQLERMLDMKVNPITGYASKWDY 136 (136)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhCCCCCcccccCCcC
Confidence 999999999999999999999999999999999999999999999999999999999998
No 6
>cd00922 Cyt_c_Oxidase_IV Cytochrome c oxidase subunit IV. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit IV is the largest of the nuclear-encoded subunits. It binds ATP at the matrix side, leading to an allosteric inhibition of enzyme activity at high intramitochondrial ATP/ADP ratios. In mammals, subunit IV has a lung-specific isoform and a ubiquitously expressed isoform.
Probab=100.00 E-value=6.3e-52 Score=366.29 Aligned_cols=136 Identities=41% Similarity=0.689 Sum_probs=133.8
Q ss_pred eeeeccccccccccccCCCCCCCCccccCChHHHHHHHHhcCChhccCHHHHHHHhhhhccccccccccCCCCCCCCcce
Q psy2997 229 EVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLG 308 (415)
Q Consensus 229 evvg~g~ng~p~Y~D~~d~P~Pair~k~~~~~i~aLreKeKgdWk~LS~eEKKalYriSF~qt~ae~~~~~~~p~gewk~ 308 (415)
||||+|.||.|.|+|+.++|+|++||+++++++++|||||||||++||++|||||||+|||||+|||++ |+||||.
T Consensus 1 ~~~~~~~~s~p~y~d~~~~p~p~~~~~e~~~~~~~Lrekek~dW~~LT~~EKkAlY~isfg~~~~e~~~----~~~ewk~ 76 (136)
T cd00922 1 EVVGYGANSLPTYADIPDRPLPMIRFRELSAEIKALREKEKGDWKQLTLEEKKALYRISFGETGPEMNA----PTGEWKT 76 (136)
T ss_pred CcccccccCCccccCCCCCCCCcCccccchHHHHHHHHHhhCCHhhCCHHHHhhHhhhhhccccccccC----CCccHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999998 9999999
Q ss_pred eeeeeeeeehhhhhhhhhcccccchhHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHccCCCCccccccccc
Q psy2997 309 GVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDY 383 (415)
Q Consensus 309 v~g~~~~~i~~i~~~l~~~~~~~~~~s~~~~~~~r~~~~~p~P~Tmt~Ewqea~~erm~~~k~NPItG~SSkwdY 383 (415)
|+|+++++|+ +|+++|+++|+|+|+|+|+|||+||||||+|||+++++|||||+||+|||
T Consensus 77 v~~~~~~~i~---------------~s~~~~~~~r~~~~~~~P~T~t~Ewqea~~er~~~~~~NPitG~ss~~dy 136 (136)
T cd00922 77 VFGGVLAFIG---------------ITGVIFGLQRAFVYGPKPHTFTEEWQEAQLERMLDMKVNPITGYASKWDY 136 (136)
T ss_pred HHHHHHHHHH---------------HHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhCCCCCcccccCCcC
Confidence 9999999988 99999999999999999999999999999999999999999999999998
No 7
>PF06592 DUF1138: Protein of unknown function (DUF1138); InterPro: IPR009515 This family consists of several hypothetical short plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=92.73 E-value=0.15 Score=42.17 Aligned_cols=47 Identities=26% Similarity=0.206 Sum_probs=32.8
Q ss_pred cchhhHHHHHHHHHH--HHHHHHHHHhCCCCCCCCC-HHHHHHHHHHHHH
Q psy2997 124 LGSVGLSMVVIAVSL--FYYAFLKAFFLPPLPATMT-PEGWENTVTKMIQ 170 (415)
Q Consensus 124 K~V~ggvl~~i~is~--~lf~~~r~~vypp~P~Tfs-~EWqeAq~ermi~ 170 (415)
|.|++.+....+++. ..|+..+....+-+|+|++ +||.+++.+||..
T Consensus 2 kyIi~al~gsfa~ay~c~~~vs~~K~FGGt~p~Tv~~keW~~aT~~K~qa 51 (73)
T PF06592_consen 2 KYIIGALAGSFAVAYVCDQYVSDKKIFGGTTPHTVSNKEWWKATDKKFQA 51 (73)
T ss_pred cEEeehHHHHHHHHHHHHHHHhcccccCCCCCCccccHHHHHHHHHHHhh
Confidence 445555554444443 4566666666889999996 5999999999864
No 8
>PF06592 DUF1138: Protein of unknown function (DUF1138); InterPro: IPR009515 This family consists of several hypothetical short plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=91.41 E-value=0.12 Score=42.66 Aligned_cols=30 Identities=30% Similarity=0.380 Sum_probs=24.8
Q ss_pred HHHHHHhhCCCCCCCCC-HHHHHHHHHHHHH
Q psy2997 339 YAFLKAFFLPPLPTTMT-PEGWENTVTKMIQ 368 (415)
Q Consensus 339 ~~~~r~~~~~p~P~Tmt-~Ewqea~~erm~~ 368 (415)
|+..+..+.+-.|+|++ +||++++.+||..
T Consensus 21 ~vs~~K~FGGt~p~Tv~~keW~~aT~~K~qa 51 (73)
T PF06592_consen 21 YVSDKKIFGGTTPHTVSNKEWWKATDKKFQA 51 (73)
T ss_pred HHhcccccCCCCCCccccHHHHHHHHHHHhh
Confidence 56666667999999996 5999999999874
No 9
>PF13239 2TM: 2TM domain
Probab=52.59 E-value=32 Score=27.99 Aligned_cols=38 Identities=16% Similarity=0.116 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHH
Q psy2997 129 LSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQ 170 (415)
Q Consensus 129 gvl~~i~is~~lf~~~r~~vypp~P~Tfs~EWqeAq~ermi~ 170 (415)
.++++-|+++++- +++.|. .+..|.++|++++.|+.++
T Consensus 45 ~~~~~Wgi~L~~h-~~~vf~---~~~~~~~~We~rki~k~m~ 82 (83)
T PF13239_consen 45 WPILGWGIGLAIH-ALKVFG---SKYFFGKDWEERKIQKLME 82 (83)
T ss_pred HHHHHHHHHHHHH-HHHHHc---ccccccchHHHHHHHHHhc
Confidence 4556666666665 445563 2378889999999998765
No 10
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=48.20 E-value=24 Score=31.19 Aligned_cols=28 Identities=18% Similarity=0.153 Sum_probs=24.7
Q ss_pred CCCCccchhhHHHHHHHHHHHHHHHHHH
Q psy2997 119 PDTEYLGSVGLSMVVIAVSLFYYAFLKA 146 (415)
Q Consensus 119 ptGEWK~V~ggvl~~i~is~~lf~~~r~ 146 (415)
....|...+|.++..+++|++|++.+|-
T Consensus 13 ~g~sW~~LVGVv~~al~~SlLIalaaKC 40 (102)
T PF15176_consen 13 GGRSWPFLVGVVVTALVTSLLIALAAKC 40 (102)
T ss_pred CCcccHhHHHHHHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999988763
No 11
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=47.03 E-value=9.6 Score=29.01 Aligned_cols=19 Identities=21% Similarity=0.636 Sum_probs=16.0
Q ss_pred HhcCChhccCHHHHHHHhh
Q psy2997 84 KEKGHWNALSKEEKKMLYR 102 (415)
Q Consensus 84 KEKGdWk~LS~eEKKALYr 102 (415)
.|..+|+.||.+||.++..
T Consensus 25 dEI~~W~~~s~~er~~i~~ 43 (51)
T PF06945_consen 25 DEIRDWKSMSDDERRAILA 43 (51)
T ss_pred HHHHHHhhCCHHHHHHHHH
Confidence 3668999999999998764
No 12
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=44.48 E-value=11 Score=28.69 Aligned_cols=19 Identities=21% Similarity=0.636 Sum_probs=15.9
Q ss_pred HhcCChhccCHHHHHHHhh
Q psy2997 267 KEKGHWNALSKEEKKMLYR 285 (415)
Q Consensus 267 KeKgdWk~LS~eEKKalYr 285 (415)
.|..+|+.||.+||.++..
T Consensus 25 dEI~~W~~~s~~er~~i~~ 43 (51)
T PF06945_consen 25 DEIRDWKSMSDDERRAILA 43 (51)
T ss_pred HHHHHHhhCCHHHHHHHHH
Confidence 3567999999999998764
No 13
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=26.40 E-value=12 Score=31.99 Aligned_cols=18 Identities=28% Similarity=0.209 Sum_probs=15.7
Q ss_pred eeeecccCCcccccccCC
Q psy2997 46 EVVGHGRNGIAAYGDNVL 63 (415)
Q Consensus 46 eVVG~G~ng~p~Y~Dr~d 63 (415)
.||||-.+|+|+|+-|-+
T Consensus 41 QiVGYllSGDPaYIpr~n 58 (88)
T COG4472 41 QIVGYLLSGDPAYIPRYN 58 (88)
T ss_pred HHHhhhccCCccccCccc
Confidence 589999999999997744
No 14
>PF11216 DUF3012: Protein of unknown function (DUF3012); InterPro: IPR021379 This family of proteins with unknown function is restricted to Gammaproteobacteria.
Probab=26.34 E-value=29 Score=24.90 Aligned_cols=13 Identities=46% Similarity=0.828 Sum_probs=10.9
Q ss_pred HHHHHHhcCChhc
Q psy2997 79 LLLREKEKGHWNA 91 (415)
Q Consensus 79 ~aLrEKEKGdWk~ 91 (415)
..++||.||||+.
T Consensus 8 ~~m~~kpK~dWta 20 (32)
T PF11216_consen 8 EDMKEKPKGDWTA 20 (32)
T ss_pred HHHhhCCcccCcH
Confidence 4799999999963
No 15
>PF04689 S1FA: DNA binding protein S1FA; InterPro: IPR006779 S1FA is an unusual small plant peptide of only 70 amino acids with a basic domain which contains a nuclear localization signal and a putative DNA binding helix. S1FA is highly conserved between dicotyledonous and monocotyledonous plants and may be a DNA-binding protein that specifically recognises the negative promoter element S1F [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=21.00 E-value=1.8e+02 Score=24.10 Aligned_cols=44 Identities=23% Similarity=0.440 Sum_probs=24.3
Q ss_pred eeeehhhhhhhhhcccccchhHHHHHHHHHHhhCCCC-CCCCCHHHHHHHHHHHHH
Q psy2997 314 MVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPL-PTTMTPEGWENTVTKMIQ 368 (415)
Q Consensus 314 ~~~i~~i~~~l~~~~~~~~~~s~~~~~~~r~~~~~p~-P~Tmt~Ewqea~~erm~~ 368 (415)
+++.+++..|||.||. +++.+++.+ ||. .+..|+ +..-.|+|++
T Consensus 18 lvV~g~ll~flvGnyv-------lY~Yaqk~l--pp~kkkpvsk--kk~k~e~lkq 62 (69)
T PF04689_consen 18 LVVAGLLLVFLVGNYV-------LYVYAQKTL--PPKKKKPVSK--KKMKRERLKQ 62 (69)
T ss_pred ehHHHHHHHHHHHHHH-------HHHHHhhcC--CCCCCCcccH--HHHHHHHHhc
Confidence 3445677889887765 444556543 443 444453 2344556654
No 16
>COG5547 Small integral membrane protein [Function unknown]
Probab=20.46 E-value=62 Score=26.26 Aligned_cols=22 Identities=9% Similarity=0.170 Sum_probs=18.2
Q ss_pred CCccchhhHHHHHHHHHHHHHH
Q psy2997 121 TEYLGSVGLSMVVIAVSLFYYA 142 (415)
Q Consensus 121 GEWK~V~ggvl~~i~is~~lf~ 142 (415)
|=||+++..+++.+|+.+.+|.
T Consensus 28 GfwKtilviil~~lGv~iGl~~ 49 (62)
T COG5547 28 GFWKTILVIILILLGVYIGLYK 49 (62)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4689999999988888888774
Done!