Query psy2997
Match_columns 415
No_of_seqs 275 out of 459
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 22:49:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2997.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2997hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v54_D Cytochrome C oxidase su 100.0 1.7E-68 5.7E-73 476.4 13.5 146 43-192 1-147 (147)
2 2y69_D Cytochrome C oxidase su 100.0 5.6E-68 1.9E-72 481.8 13.7 150 39-192 19-169 (169)
3 1v54_D Cytochrome C oxidase su 100.0 1.3E-66 4.3E-71 464.3 8.5 146 226-390 1-147 (147)
4 2y69_D Cytochrome C oxidase su 100.0 2.1E-66 7.2E-71 471.5 8.8 153 219-390 16-169 (169)
5 2ks1_B Epidermal growth factor 38.4 24 0.00082 25.6 3.0 25 123-147 14-38 (44)
6 2l2t_A Receptor tyrosine-prote 34.8 31 0.0011 25.1 3.1 23 125-147 15-37 (44)
7 2knc_B Integrin beta-3; transm 28.6 76 0.0026 25.2 4.7 61 121-188 9-74 (79)
8 4fk7_A Toxin certhrax, putativ 26.6 33 0.0011 30.6 2.5 45 69-114 4-49 (229)
9 3bw8_A Exoenzyme C3, mono-ADP- 25.1 29 0.001 31.7 1.9 25 262-287 28-52 (217)
10 4fk7_A Toxin certhrax, putativ 24.7 35 0.0012 30.5 2.3 44 252-296 4-48 (229)
11 3t7h_A Ubiquitin-like modifier 23.0 19 0.00066 34.8 0.3 16 13-28 212-227 (291)
No 1
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=100.00 E-value=1.7e-68 Score=476.38 Aligned_cols=146 Identities=29% Similarity=0.574 Sum_probs=142.1
Q ss_pred CCCeeeecccCCcccccccCCCCCCCCccccc-chHHHHHHHHhcCChhccCHHHHHHHhhhhcccchHhhhcCCCCCCC
Q psy2997 43 GNREVVGHGRNGIAAYGDNVLCPFPAIRYKVF-DSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDT 121 (415)
Q Consensus 43 g~ReVVG~G~ng~p~Y~Dr~d~P~Pairf~E~-t~~i~aLrEKEKGdWk~LS~eEKKALYriSF~qTfAE~~~hGP~ptG 121 (415)
|+|||||||+||.|+|+||+|+|+|+|||+++ +++|++|||||||||++||+||||||||||||||||||++ |+|
T Consensus 1 g~r~vv~~~~~~~p~Y~d~~d~P~P~i~f~~~lt~~i~aLreKeKgdWk~LT~eEKkAlYrisF~~t~ae~~~----p~g 76 (147)
T 1v54_D 1 AHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR----STN 76 (147)
T ss_dssp ---CCCCGGGTTSCCCCCBTTBCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTC----CCS
T ss_pred CCCcccccCcCCCceecccCCCCCCCccccccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccC----CCC
Confidence 78999999999999999999999999999998 9999999999999999999999999999999999999999 999
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccccCCCcccC
Q psy2997 122 EYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRP 192 (415)
Q Consensus 122 EWK~V~ggvl~~i~is~~lf~~~r~~vypp~P~Tfs~EWqeAq~ermi~~k~NPItG~SSkWDYe~k~WKk 192 (415)
|||+|+|+++++||+|+++|+++|+|||+|+|+||++|||+||+||||++++|||+|+||+||||||+|||
T Consensus 77 ewK~v~g~v~~~i~~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erm~~~~~nPi~G~ss~wdYe~~~Wkk 147 (147)
T 1v54_D 77 EWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 147 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEECC
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHccCCCCcCchhhhchhhcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997
No 2
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=100.00 E-value=5.6e-68 Score=481.80 Aligned_cols=150 Identities=29% Similarity=0.552 Sum_probs=142.0
Q ss_pred ccCcCCCeeeecccCCcccccccCCCCCCCCccccc-chHHHHHHHHhcCChhccCHHHHHHHhhhhcccchHhhhcCCC
Q psy2997 39 FPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVF-DSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGA 117 (415)
Q Consensus 39 ~~~ig~ReVVG~G~ng~p~Y~Dr~d~P~Pairf~E~-t~~i~aLrEKEKGdWk~LS~eEKKALYriSF~qTfAE~~~hGP 117 (415)
.|.+|+|||||||+||.|+|+||+|||||+|||+++ +++|++|||||||||++||+||||||||||||||||||++
T Consensus 19 ~~~~g~revv~~~~~~~p~Y~Dr~d~P~P~irf~~~~t~~i~aLreKEKgdWk~LT~eEKKAlYriSF~qt~aE~~~--- 95 (169)
T 2y69_D 19 VCVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR--- 95 (169)
T ss_dssp -------CCCCGGGTTSCCCCCCTTCCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTC---
T ss_pred eeeecCcceeccCcCCCceecccCCCCCCCCcccccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccC---
Confidence 467899999999999999999999999999999998 8999999999999999999999999999999999999999
Q ss_pred CCCCCccchhhHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHcCCCCCcccccccccCCCcccC
Q psy2997 118 YPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWRP 192 (415)
Q Consensus 118 ~ptGEWK~V~ggvl~~i~is~~lf~~~r~~vypp~P~Tfs~EWqeAq~ermi~~k~NPItG~SSkWDYe~k~WKk 192 (415)
|+||||+|+|+++++||+|+++|+++|+|||+|+|+||++|||+||+||||++++|||+|+||+||||||+|||
T Consensus 96 -ptgEWK~V~ggv~~~i~~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erml~~~~NPitG~SSkwdYe~~~WKk 169 (169)
T 2y69_D 96 -STNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWKK 169 (169)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETTTTEECC
T ss_pred -CCCchhHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHcCCCCCcCchhhhccccceeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997
No 3
>1v54_D Cytochrome C oxidase subunit IV isoform 1; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.1.1 PDB: 1oco_D* 1occ_D* 1ocz_D* 1ocr_D* 1v55_D* 2dyr_D* 2dys_D* 2eij_D* 2eik_D* 2eil_D* 2eim_D* 2ein_D* 2occ_D* 2ybb_O* 2zxw_D* 3abk_D* 3abl_D* 3abm_D* 3ag1_D* 3ag2_D* ...
Probab=100.00 E-value=1.3e-66 Score=464.28 Aligned_cols=146 Identities=29% Similarity=0.570 Sum_probs=141.1
Q ss_pred CCceeeeccccccccccccCCCCCCCCccccC-ChHHHHHHHHhcCChhccCHHHHHHHhhhhccccccccccCCCCCCC
Q psy2997 226 GNREVVGHGRNGIAAYGDNVLCPFPAIRYKVF-DSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDT 304 (415)
Q Consensus 226 g~revvg~g~ng~p~Y~D~~d~P~Pair~k~~-~~~i~aLreKeKgdWk~LS~eEKKalYriSF~qt~ae~~~~~~~p~g 304 (415)
|+|||||||+||.|+|+||+|||||+|||++. |++|++|||||||||++||+||||||||||||||||||++ |+|
T Consensus 1 g~r~vv~~~~~~~p~Y~d~~d~P~P~i~f~~~lt~~i~aLreKeKgdWk~LT~eEKkAlYrisF~~t~ae~~~----p~g 76 (147)
T 1v54_D 1 AHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR----STN 76 (147)
T ss_dssp ---CCCCGGGTTSCCCCCBTTBCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTC----CCS
T ss_pred CCCcccccCcCCCceecccCCCCCCCccccccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccC----CCC
Confidence 78999999999999999999999999999988 9999999999999999999999999999999999999999 999
Q ss_pred CcceeeeeeeeeehhhhhhhhhcccccchhHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHccCCCCcccccccccc
Q psy2997 305 EYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGMASKWDYE 384 (415)
Q Consensus 305 ewk~v~g~~~~~i~~i~~~l~~~~~~~~~~s~~~~~~~r~~~~~p~P~Tmt~Ewqea~~erm~~~k~NPItG~SSkwdYe 384 (415)
|||.|+|+++++|| +|+++|+++|+|+++|+|+|||+|||+||+|||+++++|||||+||+||||
T Consensus 77 ewK~v~g~v~~~i~---------------~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erm~~~~~nPi~G~ss~wdYe 141 (147)
T 1v54_D 77 EWKTVVGAAMFFIG---------------FTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGFSAKWDYD 141 (147)
T ss_dssp HHHHHHHHHHHHHH---------------HHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTSGGGEETT
T ss_pred chhHHHHHHHHHHH---------------HHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHccCCCCcCchhhhchh
Confidence 99999999999988 999999999999999999999999999999999999999999999999999
Q ss_pred cCcccc
Q psy2997 385 NDRWRP 390 (415)
Q Consensus 385 ~~~Wk~ 390 (415)
||+|||
T Consensus 142 ~~~Wkk 147 (147)
T 1v54_D 142 KNEWKK 147 (147)
T ss_dssp TTEECC
T ss_pred hcccCC
Confidence 999997
No 4
>2y69_D Cytochrome C oxidase subunit 4 isoform 1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=100.00 E-value=2.1e-66 Score=471.47 Aligned_cols=153 Identities=29% Similarity=0.542 Sum_probs=141.0
Q ss_pred CCccCCcCCceeeeccccccccccccCCCCCCCCccccC-ChHHHHHHHHhcCChhccCHHHHHHHhhhhcccccccccc
Q psy2997 219 SGRLGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVF-DSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTR 297 (415)
Q Consensus 219 ~~~~~~~g~revvg~g~ng~p~Y~D~~d~P~Pair~k~~-~~~i~aLreKeKgdWk~LS~eEKKalYriSF~qt~ae~~~ 297 (415)
+++.+.+|+|||||||+||.|+|+||+|||||+|||++. |++|++|||||||||++||+||||||||||||||||||++
T Consensus 16 ~~~~~~~g~revv~~~~~~~p~Y~Dr~d~P~P~irf~~~~t~~i~aLreKEKgdWk~LT~eEKKAlYriSF~qt~aE~~~ 95 (169)
T 2y69_D 16 STSVCVRAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNR 95 (169)
T ss_dssp ----------CCCCGGGTTSCCCCCCTTCCSCSSCSCCCCCHHHHHHHHHTTSCGGGSCHHHHHHHHHHHCSSCHHHHTC
T ss_pred hheeeeecCcceeccCcCCCceecccCCCCCCCCcccccCcHHHHHHHHHhcCCHHHcCHHHHHHHHHHHhccccccccC
Confidence 556667899999999999999999999999999999988 8999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcceeeeeeeeeehhhhhhhhhcccccchhHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHHHccCCCCccc
Q psy2997 298 HGAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWENTVTKMIQLQWNPITGM 377 (415)
Q Consensus 298 ~~~~p~gewk~v~g~~~~~i~~i~~~l~~~~~~~~~~s~~~~~~~r~~~~~p~P~Tmt~Ewqea~~erm~~~k~NPItG~ 377 (415)
|+||||.|+|+++++|| +|+++|+++|.|+|+|+|+|||+||||||+|||+++++|||||+
T Consensus 96 ----ptgEWK~V~ggv~~~i~---------------~s~~~f~~~r~~v~~p~P~T~~~Ewqeaq~erml~~~~NPitG~ 156 (169)
T 2y69_D 96 ----STNEWKTVVGAAMFFIG---------------FTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAPIQGF 156 (169)
T ss_dssp ----CCSHHHHHHHHHHHHHH---------------HHHHHHHHHHHHTCCCCCGGGSHHHHHHHHHHHHHTTSSTTTTS
T ss_pred ----CCCchhHHHHHHHHHHH---------------HHHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHHHcCCCCCcCc
Confidence 99999999999999988 99999999999999999999999999999999999999999999
Q ss_pred ccccccccCcccc
Q psy2997 378 ASKWDYENDRWRP 390 (415)
Q Consensus 378 SSkwdYe~~~Wk~ 390 (415)
||+||||||+|||
T Consensus 157 SSkwdYe~~~WKk 169 (169)
T 2y69_D 157 SAKWDYDKNEWKK 169 (169)
T ss_dssp GGGEETTTTEECC
T ss_pred hhhhccccceeCC
Confidence 9999999999997
No 5
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=38.38 E-value=24 Score=25.60 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=17.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHH
Q psy2997 123 YLGSVGLSMVVIAVSLFYYAFLKAF 147 (415)
Q Consensus 123 WK~V~ggvl~~i~is~~lf~~~r~~ 147 (415)
--.|++|+++++.+.+++|+++|.-
T Consensus 14 A~gVVgGv~~~~ii~~~~~~~~RRr 38 (44)
T 2ks1_B 14 ATGMVGALLLLLVVALGIGLFMRRR 38 (44)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred EeehhHHHHHHHHHHHHHHHHhhhh
Confidence 3456777777777777777777743
No 6
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=34.78 E-value=31 Score=25.09 Aligned_cols=23 Identities=17% Similarity=0.463 Sum_probs=16.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q psy2997 125 GSVGLSMVVIAVSLFYYAFLKAF 147 (415)
Q Consensus 125 ~V~ggvl~~i~is~~lf~~~r~~ 147 (415)
.|++|+++++.+.+++|+++|.-
T Consensus 15 gVVgGv~~v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 15 GVIGGLFILVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eehHHHHHHHHHHHHHHHHhhhh
Confidence 46666777777777778777743
No 7
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.64 E-value=76 Score=25.23 Aligned_cols=61 Identities=13% Similarity=0.065 Sum_probs=33.1
Q ss_pred CCccchhhHHHHHHHHHHHHHHHHHHHhCCCCCCCC--CHHHHHHHHHHHHHc---CCCCCcccccccccCCC
Q psy2997 121 TEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATM--TPEGWENTVTKMIQL---QWNPITGMASKWDYEND 188 (415)
Q Consensus 121 GEWK~V~ggvl~~i~is~~lf~~~r~~vypp~P~Tf--s~EWqeAq~ermi~~---k~NPItG~SSkWDYe~k 188 (415)
+-+.-|+|.+...+.+++++.+..|.++ |+ -+|+++-+.|++.+. ..||+.=-+.. .|+|-
T Consensus 9 n~~~Iv~gvi~gilliGllllliwk~~~------~i~DrrE~~kFEkE~~~~~w~~~~NPlyk~~tt-t~~nP 74 (79)
T 2knc_B 9 DILVVLLSVMGAILLIGLAALLIWKLLI------TIHDRKEFAKFEEERARAKWDTANNPLYKEATS-TFTNI 74 (79)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHTTTTCCHHHHCSC-CSCCC
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhcccccCCCCCccCCcc-CccCC
Confidence 3333333434434446666666666553 22 257887777776654 57887554444 45544
No 8
>4fk7_A Toxin certhrax, putative ADP-ribosyltransferase certhrax; mono-ADP-ribosyltransferase; HET: P34; 1.78A {Bacillus cereus}
Probab=26.65 E-value=33 Score=30.65 Aligned_cols=45 Identities=11% Similarity=0.227 Sum_probs=31.9
Q ss_pred CcccccchHHHHHHHHhcCCh-hccCHHHHHHHhhhhcccchHhhhc
Q psy2997 69 IRYKVFDSDLLLLREKEKGHW-NALSKEEKKMLYRASFRQTFAEFTR 114 (415)
Q Consensus 69 irf~E~t~~i~aLrEKEKGdW-k~LS~eEKKALYriSF~qTfAE~~~ 114 (415)
+-|+.....-.+=-++.-.+| ++||.+|+.|++..+-+ .|.+++.
T Consensus 4 ~df~~~~~~a~~W~~k~y~~w~~~Lt~~E~~AI~~YT~~-~Y~~IN~ 49 (229)
T 4fk7_A 4 LDFKWYTRKAESWGVQTFKNWKENLTISEKDIITGYTGS-KYDPINE 49 (229)
T ss_dssp BCCTTCHHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHTC-SSCHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhc-CHHHHHH
Confidence 345555555556667777889 58999999999887643 4666665
No 9
>3bw8_A Exoenzyme C3, mono-ADP-ribosyltransferase C3; C3LIM, RHO, ribosylating toxin, ARTT, C3BOT, C3CER, C3STAU, glycosyltransferase, NAD; 1.80A {Clostridium limosum}
Probab=25.13 E-value=29 Score=31.69 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=18.3
Q ss_pred HHHHHHhcCChhccCHHHHHHHhhhh
Q psy2997 262 LLLREKEKGHWNALSKEEKKMLYRAS 287 (415)
Q Consensus 262 ~aLreKeKgdWk~LS~eEKKalYriS 287 (415)
++--.+.-..|+ ||.+||.|++..+
T Consensus 28 ~~Wg~~~~~~W~-Lt~~E~~Ai~~Yt 52 (217)
T 3bw8_A 28 RAWGDKQFAKYK-LSSSEKNALTIYT 52 (217)
T ss_dssp HHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred HHHHHhhHhccC-CCHHHHHHHHHHH
Confidence 344444446787 9999999997776
No 10
>4fk7_A Toxin certhrax, putative ADP-ribosyltransferase certhrax; mono-ADP-ribosyltransferase; HET: P34; 1.78A {Bacillus cereus}
Probab=24.67 E-value=35 Score=30.47 Aligned_cols=44 Identities=11% Similarity=0.229 Sum_probs=30.8
Q ss_pred CccccCChHHHHHHHHhcCCh-hccCHHHHHHHhhhhccccccccc
Q psy2997 252 IRYKVFDSDLLLLREKEKGHW-NALSKEEKKMLYRASFRQTFAEFT 296 (415)
Q Consensus 252 ir~k~~~~~i~aLreKeKgdW-k~LS~eEKKalYriSF~qt~ae~~ 296 (415)
+-|+....+-.+=-++.-.+| ++||.+|+.|++..+-. .+..++
T Consensus 4 ~df~~~~~~a~~W~~k~y~~w~~~Lt~~E~~AI~~YT~~-~Y~~IN 48 (229)
T 4fk7_A 4 LDFKWYTRKAESWGVQTFKNWKENLTISEKDIITGYTGS-KYDPIN 48 (229)
T ss_dssp BCCTTCHHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHTC-SSCHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhc-CHHHHH
Confidence 446666666666667777889 58999999999887643 344443
No 11
>3t7h_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, ligase; 1.60A {Saccharomyces cerevisiae} PDB: 3t7f_A 3t7g_A 3ruj_A 4gsj_A*
Probab=23.05 E-value=19 Score=34.75 Aligned_cols=16 Identities=6% Similarity=0.179 Sum_probs=13.8
Q ss_pred CCCCCCcchhhhhhhh
Q psy2997 13 SYPRNPGWINRHAIVQ 28 (415)
Q Consensus 13 ~~~~~~~~~~~~~~~~ 28 (415)
.+|.+|||.|||-+.-
T Consensus 212 ~~~~~PGWpLRNlL~l 227 (291)
T 3t7h_A 212 TMENVPSALTKNFLSV 227 (291)
T ss_dssp CSTTCCBTTHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH
Confidence 4789999999998873
Done!