Your job contains 1 sequence.
>psy2997
MVLRFSHDEPTPSYPRNPGWINRHAIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGD
NVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPD
TEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNPITGMA
SKWDYENDRWRPGFKPCVPVLLRLSQGILPPSPPHHHDSGRLGEHGNREVVGHGRNGIAA
YGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGA
YPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEGWE
NTVTKMIQLQWNPITGMASKWDYENDRWRPGFKPWFLDYLPKNSPLRELTPEEGS
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2997
(415 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0033020 - symbol:CG10396 species:7227 "Drosophila ... 293 6.6e-26 1
FB|FBgn0032833 - symbol:CoIV "Cytochrome c oxidase subuni... 277 3.3e-24 1
WB|WBGene00012354 - symbol:W09C5.8 species:6239 "Caenorha... 220 8.9e-18 1
ZFIN|ZDB-GENE-030131-5175 - symbol:cox4i1 "cytochrome c o... 213 5.5e-17 1
UNIPROTKB|P13073 - symbol:COX4I1 "Cytochrome c oxidase su... 202 9.4e-16 1
ZFIN|ZDB-GENE-040426-1775 - symbol:cox4i2 "cytochrome c o... 197 3.3e-15 2
RGD|68374 - symbol:Cox4i1 "cytochrome c oxidase subunit I... 196 4.4e-15 1
MGI|MGI:88473 - symbol:Cox4i1 "cytochrome c oxidase subun... 193 9.4e-15 1
UNIPROTKB|Q96KJ9 - symbol:COX4I2 "Cytochrome c oxidase su... 189 2.6e-14 1
UNIPROTKB|Q5ZJV5 - symbol:COX4I1 "Uncharacterized protein... 186 5.6e-14 1
UNIPROTKB|P00423 - symbol:COX4I1 "Cytochrome c oxidase su... 178 4.3e-13 1
UNIPROTKB|E2QUA8 - symbol:COX4I1 "Uncharacterized protein... 176 7.1e-13 1
UNIPROTKB|I3LER5 - symbol:COX4I1 "Cytochrome c oxidase su... 174 1.2e-12 1
UNIPROTKB|E1B8K7 - symbol:COX4I2 "Uncharacterized protein... 168 5.4e-12 1
MGI|MGI:2135755 - symbol:Cox4i2 "cytochrome c oxidase sub... 164 1.5e-11 1
RGD|69422 - symbol:Cox4i2 "cytochrome c oxidase subunit I... 159 5.2e-11 1
UNIPROTKB|H3BPG0 - symbol:COX4I1 "Cytochrome c oxidase su... 117 2.0e-06 1
UNIPROTKB|H3BN72 - symbol:COX4I1 "Cytochrome c oxidase su... 114 4.2e-06 1
UNIPROTKB|H3BNV9 - symbol:COX4I1 "Cytochrome c oxidase su... 114 4.2e-06 1
UNIPROTKB|Q95283 - symbol:COX4I1 "Cytochrome c oxidase su... 99 0.00018 1
>FB|FBgn0033020 [details] [associations]
symbol:CG10396 species:7227 "Drosophila melanogaster"
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0004129 "cytochrome-c
oxidase activity" evidence=ISS] [GO:0005751 "mitochondrial
respiratory chain complex IV" evidence=ISS] [GO:0006123
"mitochondrial electron transport, cytochrome c to oxygen"
evidence=ISS] InterPro:IPR004203 Pfam:PF02936 EMBL:AE013599
GO:GO:0004129 GeneTree:ENSGT00390000002407 KO:K02263
Gene3D:1.10.442.10 InterPro:IPR013288 PRINTS:PR01873
SUPFAM:SSF81406 eggNOG:NOG276242 EMBL:AY084105 RefSeq:NP_610168.1
UniGene:Dm.14583 SMR:Q8T4H8 IntAct:Q8T4H8 MINT:MINT-796457
STRING:Q8T4H8 EnsemblMetazoa:FBtr0086089 GeneID:35491
KEGG:dme:Dmel_CG10396 UCSC:CG10396-RA FlyBase:FBgn0033020
InParanoid:Q8T4H8 OMA:LKRMLDM OrthoDB:EOG40P2Q5 GenomeRNAi:35491
NextBio:793688 Uniprot:Q8T4H8
Length = 176
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 63/148 (42%), Positives = 87/148 (58%)
Query: 44 NREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRA 103
+R+VVGHG NG Y D+ CPFPAIRY+ +L LREKE W LS +EKK LYR
Sbjct: 33 DRQVVGHGINGRPIYFDSPDCPFPAIRYREVSPELCALREKELDDWKKLSLDEKKQLYRY 92
Query: 104 SFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGWEN 163
SF QT+AEF +H P E+ +G+++ ++++ LP T E
Sbjct: 93 SFCQTYAEF-QH-ITP--EWKMCLGVALWLVSIGIAISITMKTVLYGKLPDTFNDERQSA 148
Query: 164 TVTKMIQLQWNPITGMASKWDYENDRWR 191
+ ++IQLQ NPITG+ASKW Y ++W+
Sbjct: 149 QLRRIIQLQMNPITGLASKWCYRENKWK 176
Score = 208 (78.3 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 50/101 (49%), Positives = 63/101 (62%)
Query: 227 NREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRA 286
+R+VVGHG NG Y D+ CPFPAIRY+ +L LREKE W LS +EKK LYR
Sbjct: 33 DRQVVGHGINGRPIYFDSPDCPFPAIRYREVSPELCALREKELDDWKKLSLDEKKQLYRY 92
Query: 287 SFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIA-EITIFLIT 326
SF QT+AEF +H P+ + GV L +V I I+I + T
Sbjct: 93 SFCQTYAEF-QH-ITPEWKMCLGVALWLVSIGIAISITMKT 131
Score = 94 (38.1 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
Identities = 15/25 (60%), Positives = 21/25 (84%)
Query: 365 KMIQLQWNPITGMASKWDYENDRWR 389
++IQLQ NPITG+ASKW Y ++W+
Sbjct: 152 RIIQLQMNPITGLASKWCYRENKWK 176
>FB|FBgn0032833 [details] [associations]
symbol:CoIV "Cytochrome c oxidase subunit IV" species:7227
"Drosophila melanogaster" [GO:0004129 "cytochrome-c oxidase
activity" evidence=ISS] [GO:0005739 "mitochondrion"
evidence=ISS;IDA] [GO:0005751 "mitochondrial respiratory chain
complex IV" evidence=ISS] [GO:0006123 "mitochondrial electron
transport, cytochrome c to oxygen" evidence=ISS] [GO:0005811 "lipid
particle" evidence=IDA] [GO:0008283 "cell proliferation"
evidence=IMP] [GO:0007030 "Golgi organization" evidence=IMP]
[GO:0000278 "mitotic cell cycle" evidence=IMP] InterPro:IPR004203
Pfam:PF02936 GO:GO:0005739 EMBL:AE014134 GO:GO:0005811
GO:GO:0008283 GO:GO:0004129 GO:GO:0007030 GO:GO:0000278
GeneTree:ENSGT00390000002407 KO:K02263 OMA:MQTKRML
Gene3D:1.10.442.10 InterPro:IPR013288 PRINTS:PR01873
SUPFAM:SSF81406 eggNOG:NOG276242 EMBL:AY058491 EMBL:BT149857
RefSeq:NP_610013.1 RefSeq:NP_995732.1 UniGene:Dm.4187 SMR:Q9VIQ8
IntAct:Q9VIQ8 MINT:MINT-304296 STRING:Q9VIQ8
EnsemblMetazoa:FBtr0081300 EnsemblMetazoa:FBtr0081301
EnsemblMetazoa:FBtr0332242 EnsemblMetazoa:FBtr0332243 GeneID:35279
KEGG:dme:Dmel_CG10664 UCSC:CG10664-RA FlyBase:FBgn0032833
InParanoid:Q9VIQ8 OrthoDB:EOG4M6412 GenomeRNAi:35279 NextBio:792750
Uniprot:Q9VIQ8
Length = 182
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 62/161 (38%), Positives = 92/161 (57%)
Query: 31 SVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWN 90
+V TL ++ G RE+VG+G NG A Y D V P PA+R++ +++ LR KE+G W
Sbjct: 29 AVHTLDKI----GKREIVGYGWNGTACYADRVDYPLPAVRFREPTNEINALRAKEQGDWK 84
Query: 91 ALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXP 150
LS +E K LYRASF QT AE + G+ E+ +G+S++ A +
Sbjct: 85 KLSTQEIKALYRASFCQTIAE-VQAGS---GEWKLHLGVSLLFCAAAIWVAVLMNIFVYD 140
Query: 151 PLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
LP T E + + ++I L+ NP+TG+ SKWDYEN +W+
Sbjct: 141 ELPVTFDEEHQKAQLQRIIDLEINPVTGLTSKWDYENKKWK 181
Score = 181 (68.8 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 37/73 (50%), Positives = 48/73 (65%)
Query: 222 LGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKK 281
L + G RE+VG+G NG A Y D V P PA+R++ +++ LR KE+G W LS +E K
Sbjct: 33 LDKIGKREIVGYGWNGTACYADRVDYPLPAVRFREPTNEINALRAKEQGDWKKLSTQEIK 92
Query: 282 MLYRASFRQTFAE 294
LYRASF QT AE
Sbjct: 93 ALYRASFCQTIAE 105
Score = 97 (39.2 bits), Expect = 1.4e-21, Sum P(2) = 1.4e-21
Identities = 14/25 (56%), Positives = 21/25 (84%)
Query: 365 KMIQLQWNPITGMASKWDYENDRWR 389
++I L+ NP+TG+ SKWDYEN +W+
Sbjct: 157 RIIDLEINPVTGLTSKWDYENKKWK 181
>WB|WBGene00012354 [details] [associations]
symbol:W09C5.8 species:6239 "Caenorhabditis elegans"
[GO:0004129 "cytochrome-c oxidase activity" evidence=IEA]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0006123 "mitochondrial electron
transport, cytochrome c to oxygen" evidence=IMP] InterPro:IPR004203
Pfam:PF02936 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0000003 GO:GO:0004129
GO:GO:0006123 GeneTree:ENSGT00390000002407 KO:K02263 OMA:MQTKRML
Gene3D:1.10.442.10 InterPro:IPR013288 PRINTS:PR01873
SUPFAM:SSF81406 eggNOG:NOG276242 HOGENOM:HOG000231486 EMBL:Z82077
RefSeq:NP_493394.1 ProteinModelPortal:Q9U329 SMR:Q9U329
DIP:DIP-25587N MINT:MINT-1064518 STRING:Q9U329 PaxDb:Q9U329
EnsemblMetazoa:W09C5.8.1 EnsemblMetazoa:W09C5.8.2 GeneID:173237
KEGG:cel:CELE_W09C5.8 UCSC:W09C5.8.1 CTD:173237 WormBase:W09C5.8
InParanoid:Q9U329 NextBio:878833 Uniprot:Q9U329
Length = 175
Score = 220 (82.5 bits), Expect = 8.9e-18, P = 8.9e-18
Identities = 54/147 (36%), Positives = 77/147 (52%)
Query: 45 REVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRAS 104
RE+VG+G NG Y D + +PAIR++ DS + +R KE+ W LS EEKK+LYR S
Sbjct: 33 RELVGYGANGDNIYQDRLDYWYPAIRFRKEDSVIAPIRAKEQADWKNLSAEEKKLLYRYS 92
Query: 105 FRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGWENT 164
FRQT +EF Y + + +V LS V+ + P LP T E E
Sbjct: 93 FRQTLSEFEAPTGY--WKVISAVILS--VLGLCTYYAVLLNVCVYPELPPTFQNEYKEAQ 148
Query: 165 VTKMIQLQWNPITGMASKWDYENDRWR 191
V + + L+ G + +DYEN +W+
Sbjct: 149 VERALVLEKGQFLGAPTHYDYENKKWK 175
Score = 170 (64.9 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 36/74 (48%), Positives = 47/74 (63%)
Query: 228 REVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDLLLLREKEKGHWNALSKEEKKMLYRAS 287
RE+VG+G NG Y D + +PAIR++ DS + +R KE+ W LS EEKK+LYR S
Sbjct: 33 RELVGYGANGDNIYQDRLDYWYPAIRFRKEDSVIAPIRAKEQADWKNLSAEEKKLLYRYS 92
Query: 288 FRQTFAEFTRHGAY 301
FRQT +EF Y
Sbjct: 93 FRQTLSEFEAPTGY 106
Score = 51 (23.0 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 360 ENTVTKMIQLQWNPITGMASKWDYENDRWR 389
E V + + L+ G + +DYEN +W+
Sbjct: 146 EAQVERALVLEKGQFLGAPTHYDYENKKWK 175
>ZFIN|ZDB-GENE-030131-5175 [details] [associations]
symbol:cox4i1 "cytochrome c oxidase subunit IV
isoform 1" species:7955 "Danio rerio" [GO:0004129 "cytochrome-c
oxidase activity" evidence=IEA] [GO:0001666 "response to hypoxia"
evidence=IDA] InterPro:IPR004203 Pfam:PF02936
ZFIN:ZDB-GENE-030131-5175 GO:GO:0001666 GO:GO:0004129 CTD:1327
GeneTree:ENSGT00390000002407 HOVERGEN:HBG051087 KO:K02263
OMA:MQTKRML Gene3D:1.10.442.10 InterPro:IPR013288 PRINTS:PR01873
SUPFAM:SSF81406 EMBL:BX548023 EMBL:AY391417 IPI:IPI00505260
RefSeq:NP_999866.1 UniGene:Dr.76095 SMR:Q6TNV0 STRING:Q6TNV0
Ensembl:ENSDART00000026866 GeneID:326975 KEGG:dre:326975
InParanoid:Q6TNV0 NextBio:20809824 Uniprot:Q6TNV0
Length = 169
Score = 213 (80.0 bits), Expect = 5.5e-17, P = 5.5e-17
Identities = 47/138 (34%), Positives = 72/138 (52%)
Query: 55 IAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFT 113
+ AY D P P I++ + +D L+EKEKG W ALSKEEK LYR SF+++FAE
Sbjct: 35 LPAYFDRRESPLPEIKFVQQLSADQKSLKEKEKGSWAALSKEEKIALYRISFKESFAEMN 94
Query: 114 RHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGWENTVTKMIQLQW 173
+ E+ V + ++ +P T PE + + +M+ ++
Sbjct: 95 QGSG----EWKSVVAGIFFFVGLTGLVVLWQRKYVYGDVPNTFDPEYKQKEIQRMLDMRI 150
Query: 174 NPITGMASKWDYENDRWR 191
NP+ G A+KWDYEN+ W+
Sbjct: 151 NPVQGFAAKWDYENNAWK 168
Score = 141 (54.7 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 223 GEHGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKK 281
G HG +V + + AY D P P I++ + +D L+EKEKG W ALSKEEK
Sbjct: 23 GAHGVAKVEDYS---LPAYFDRRESPLPEIKFVQQLSADQKSLKEKEKGSWAALSKEEKI 79
Query: 282 MLYRASFRQTFAEFTR 297
LYR SF+++FAE +
Sbjct: 80 ALYRISFKESFAEMNQ 95
Score = 91 (37.1 bits), Expect = 1.7e-16, Sum P(2) = 1.7e-16
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 360 ENTVTKMIQLQWNPITGMASKWDYENDRWR 389
+ + +M+ ++ NP+ G A+KWDYEN+ W+
Sbjct: 139 QKEIQRMLDMRINPVQGFAAKWDYENNAWK 168
>UNIPROTKB|P13073 [details] [associations]
symbol:COX4I1 "Cytochrome c oxidase subunit 4 isoform 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0004129
"cytochrome-c oxidase activity" evidence=IEA] [GO:0007584 "response
to nutrient" evidence=IEA] [GO:0006091 "generation of precursor
metabolites and energy" evidence=TAS] [GO:0005743 "mitochondrial
inner membrane" evidence=TAS] [GO:0022904 "respiratory electron
transport chain" evidence=TAS] [GO:0044281 "small molecule
metabolic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005739 "mitochondrion" evidence=IDA]
Reactome:REACT_111217 InterPro:IPR004203 Pfam:PF02936 GO:GO:0005634
GO:GO:0005743 GO:GO:0044281 GO:GO:0007584 EMBL:CH471114
GO:GO:0004129 GO:GO:0022904 TCDB:3.D.4.11.1 CTD:1327
HOVERGEN:HBG051087 KO:K02263 OMA:MQTKRML Gene3D:1.10.442.10
InterPro:IPR013288 PRINTS:PR01873 SUPFAM:SSF81406 EMBL:M21575
EMBL:M34600 EMBL:X54802 EMBL:U90915 EMBL:AF005889 EMBL:AF017115
EMBL:AH005828 EMBL:BT019825 EMBL:AK311847 EMBL:BC008704
EMBL:BC021236 EMBL:BC062437 IPI:IPI00006579 PIR:S47012
RefSeq:NP_001852.1 UniGene:Hs.433419 ProteinModelPortal:P13073
SMR:P13073 IntAct:P13073 MINT:MINT-3007868 STRING:P13073
PhosphoSite:P13073 DMDM:117086 PaxDb:P13073 PeptideAtlas:P13073
PRIDE:P13073 DNASU:1327 Ensembl:ENST00000253452
Ensembl:ENST00000561569 Ensembl:ENST00000562336 GeneID:1327
KEGG:hsa:1327 UCSC:uc002fje.3 GeneCards:GC16P085833 HGNC:HGNC:2265
HPA:CAB004080 HPA:HPA002485 MIM:123864 neXtProt:NX_P13073
PharmGKB:PA26781 eggNOG:NOG276242 HOGENOM:HOG000231486
InParanoid:P13073 OrthoDB:EOG48SGV7 PhylomeDB:P13073 ChiTaRS:COX4I1
GenomeRNAi:1327 NextBio:5407 ArrayExpress:P13073 Bgee:P13073
CleanEx:HS_COX4I1 Genevestigator:P13073 GermOnline:ENSG00000131143
Uniprot:P13073
Length = 169
Score = 202 (76.2 bits), Expect = 9.4e-16, P = 9.4e-16
Identities = 55/169 (32%), Positives = 85/169 (50%)
Query: 25 AIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLRE 83
++V ++++ST + + VV + AY D P P + + K + L+E
Sbjct: 8 SLVGKRAISTSVCV---RAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKE 64
Query: 84 KEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXX 143
KEK W++LS +EK LYR F+++FAE R G+ E+ VG +M I +
Sbjct: 65 KEKASWSSLSMDEKVELYRIKFKESFAEMNR-GS---NEWKTVVGGAMFFIGFTALVIMW 120
Query: 144 XXXXXXPPLPATMTPEGWENTVTK-MIQLQWNPITGMASKWDYENDRWR 191
PLP + E W TK M+ ++ NPI G+ASKWDYE + W+
Sbjct: 121 QKHYVYGPLPQSFDKE-WVAKQTKRMLDMKVNPIQGLASKWDYEKNEWK 168
Score = 114 (45.2 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 238 IAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFT 296
+ AY D P P + + K + L+EKEK W++LS +EK LYR F+++FAE
Sbjct: 35 LPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMN 94
Query: 297 RHGAYPDTEYLGG----VGLSMVVI 317
R G+ +GG +G + +VI
Sbjct: 95 R-GSNEWKTVVGGAMFFIGFTALVI 118
Score = 92 (37.4 bits), Expect = 2.1e-11, Sum P(2) = 2.1e-11
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 359 WENTVTK-MIQLQWNPITGMASKWDYENDRWR 389
W TK M+ ++ NPI G+ASKWDYE + W+
Sbjct: 137 WVAKQTKRMLDMKVNPIQGLASKWDYEKNEWK 168
>ZFIN|ZDB-GENE-040426-1775 [details] [associations]
symbol:cox4i2 "cytochrome c oxidase subunit IV
isoform 2" species:7955 "Danio rerio" [GO:0004129 "cytochrome-c
oxidase activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004203 Pfam:PF02936
ZFIN:ZDB-GENE-040426-1775 GO:GO:0004129 HOVERGEN:HBG051087
KO:K02263 Gene3D:1.10.442.10 InterPro:IPR013288 PRINTS:PR01873
SUPFAM:SSF81406 eggNOG:NOG276242 HOGENOM:HOG000231486 CTD:84701
EMBL:BC059669 IPI:IPI00494894 RefSeq:NP_957097.1 UniGene:Dr.12760
ProteinModelPortal:Q6PBL1 SMR:Q6PBL1 STRING:Q6PBL1 PRIDE:Q6PBL1
GeneID:393776 KEGG:dre:393776 InParanoid:Q6PBL1 OrthoDB:EOG4GHZQP
NextBio:20814773 ArrayExpress:Q6PBL1 Bgee:Q6PBL1 Uniprot:Q6PBL1
Length = 177
Score = 197 (74.4 bits), Expect = 3.4e-15, P = 3.4e-15
Identities = 47/150 (31%), Positives = 69/150 (46%)
Query: 43 GNREVVGHGRNGIAAYGDNVLCPFPAIRYK-VFDSDLLLLREKEKGHWNALSKEEKKMLY 101
G+ +V+ Y D + P P YK + + L++KEKG WN LS EEK LY
Sbjct: 32 GHGDVIEQADMSRPMYSDRLDTPLPDRPYKDILSAADKSLKQKEKGPWNNLSNEEKIALY 91
Query: 102 RASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGW 161
R F +TFAE + P E+ + I + PP P T E
Sbjct: 92 RIMFNETFAEMKK----PTGEWKTVTAGILFFIGFTGLVVLWQRLYVYPPQPHTFGDEWQ 147
Query: 162 ENTVTKMIQLQWNPITGMASKWDYENDRWR 191
+ +M+ ++ NP+ G A+KWDYE +W+
Sbjct: 148 AKQIKRMLDMKINPVQGFAAKWDYEKGQWK 177
Score = 133 (51.9 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 30/80 (37%), Positives = 42/80 (52%)
Query: 219 SGRLGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRYK-VFDSDLLLLREKEKGHWNALSK 277
S ++ HG+ +V+ Y D + P P YK + + L++KEKG WN LS
Sbjct: 25 SVKMASHGHGDVIEQADMSRPMYSDRLDTPLPDRPYKDILSAADKSLKQKEKGPWNNLSN 84
Query: 278 EEKKMLYRASFRQTFAEFTR 297
EEK LYR F +TFAE +
Sbjct: 85 EEKIALYRIMFNETFAEMKK 104
Score = 87 (35.7 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 359 WE-NTVTKMIQLQWNPITGMASKWDYENDRWR 389
W+ + +M+ ++ NP+ G A+KWDYE +W+
Sbjct: 146 WQAKQIKRMLDMKINPVQGFAAKWDYEKGQWK 177
>RGD|68374 [details] [associations]
symbol:Cox4i1 "cytochrome c oxidase subunit IV isoform 1"
species:10116 "Rattus norvegicus" [GO:0004129 "cytochrome-c oxidase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005739 "mitochondrion" evidence=ISO] [GO:0005743 "mitochondrial
inner membrane" evidence=IEA;ISO] [GO:0007584 "response to nutrient"
evidence=IEP] InterPro:IPR004203 Pfam:PF02936 RGD:68374
GO:GO:0005634 GO:GO:0005743 GO:GO:0007584 GO:GO:0004129 CTD:1327
GeneTree:ENSGT00390000002407 HOVERGEN:HBG051087 KO:K02263
Gene3D:1.10.442.10 InterPro:IPR013288 PRINTS:PR01873 SUPFAM:SSF81406
eggNOG:NOG276242 HOGENOM:HOG000231486 OrthoDB:EOG48SGV7 EMBL:X14209
EMBL:X15029 EMBL:J05425 EMBL:X54081 EMBL:BC084719 IPI:IPI00194222
PIR:A35209 PIR:S65374 RefSeq:NP_058898.1 UniGene:Rn.2528
ProteinModelPortal:P10888 SMR:P10888 IntAct:P10888 STRING:P10888
PhosphoSite:P10888 PRIDE:P10888 Ensembl:ENSRNOT00000024033
GeneID:29445 KEGG:rno:29445 UCSC:RGD:68374 InParanoid:P10888
NextBio:609201 Genevestigator:P10888 GermOnline:ENSRNOG00000017817
Uniprot:P10888
Length = 169
Score = 196 (74.1 bits), Expect = 4.4e-15, P = 4.4e-15
Identities = 50/169 (29%), Positives = 84/169 (49%)
Query: 25 AIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLRE 83
+++ ++++ST L + VV + +Y D P P + + K+ + L+E
Sbjct: 8 SLIGKRAISTSVCL---RAHGSVVKSEDYALPSYVDRRDYPLPDVAHVKLLSASQKALKE 64
Query: 84 KEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXX 143
KEK W++LS++EK LYR F ++FAE + G E+ VGL+M I +
Sbjct: 65 KEKADWSSLSRDEKVQLYRIQFNESFAEMNK-GT---NEWKTVVGLAMFFIGFTALVLIW 120
Query: 144 XXXXXXPPLPATMTPEGWENTVTK-MIQLQWNPITGMASKWDYENDRWR 191
P+P T + W TK M+ ++ NPI G ++KWDY + W+
Sbjct: 121 EKSYVYGPIPHTFDRD-WVAMQTKRMLDMKVNPIQGFSAKWDYNKNEWK 168
Score = 126 (49.4 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 36/105 (34%), Positives = 54/105 (51%)
Query: 222 LGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEK 280
L HG+ VV + +Y D P P + + K+ + L+EKEK W++LS++EK
Sbjct: 21 LRAHGS--VVKSEDYALPSYVDRRDYPLPDVAHVKLLSASQKALKEKEKADWSSLSRDEK 78
Query: 281 KMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLI 325
LYR F ++FAE + G E+ VGL+M I + LI
Sbjct: 79 VQLYRIQFNESFAEMNK-GT---NEWKTVVGLAMFFIGFTALVLI 119
Score = 79 (32.9 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 359 WENTVTK-MIQLQWNPITGMASKWDYENDRWR 389
W TK M+ ++ NPI G ++KWDY + W+
Sbjct: 137 WVAMQTKRMLDMKVNPIQGFSAKWDYNKNEWK 168
>MGI|MGI:88473 [details] [associations]
symbol:Cox4i1 "cytochrome c oxidase subunit IV isoform 1"
species:10090 "Mus musculus" [GO:0004129 "cytochrome-c oxidase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0005743 "mitochondrial inner membrane" evidence=IDA]
[GO:0016020 "membrane" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR004203
Pfam:PF02936 MGI:MGI:88473 GO:GO:0005634 GO:GO:0005743
GO:GO:0007584 GO:GO:0004129 CTD:1327 GeneTree:ENSGT00390000002407
HOVERGEN:HBG051087 KO:K02263 OMA:MQTKRML Gene3D:1.10.442.10
InterPro:IPR013288 PRINTS:PR01873 SUPFAM:SSF81406 eggNOG:NOG276242
HOGENOM:HOG000231486 OrthoDB:EOG48SGV7 EMBL:X54691 EMBL:M37831
EMBL:M58034 EMBL:M37829 EMBL:AK012583 EMBL:AK019276 EMBL:AK150447
IPI:IPI00117978 PIR:S12142 RefSeq:NP_034071.1 UniGene:Mm.386758
ProteinModelPortal:P19783 SMR:P19783 MINT:MINT-1860013
STRING:P19783 PhosphoSite:P19783 PaxDb:P19783 PRIDE:P19783
Ensembl:ENSMUST00000034276 GeneID:12857 KEGG:mmu:12857
InParanoid:P19783 NextBio:282412 Bgee:P19783 CleanEx:MM_COX4I1
Genevestigator:P19783 GermOnline:ENSMUSG00000031818 Uniprot:P19783
Length = 169
Score = 193 (73.0 bits), Expect = 9.4e-15, P = 9.4e-15
Identities = 49/169 (28%), Positives = 82/169 (48%)
Query: 25 AIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLRE 83
+++ ++++ST L + VV Y D P P + + + + L+E
Sbjct: 8 SLIGKRAISTSVCL---RAHGSVVKSEDYAFPTYADRRDYPLPDVAHVTMLSASQKALKE 64
Query: 84 KEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXXXXX 143
KEK W++LS++EK LYR F ++FAE R G E+ VG++M I +
Sbjct: 65 KEKADWSSLSRDEKVQLYRIQFNESFAEMNR-GT---NEWKTVVGMAMFFIGFTALVLIW 120
Query: 144 XXXXXXPPLPATMTPEGWENTVTK-MIQLQWNPITGMASKWDYENDRWR 191
P+P T + W TK M+ ++ NPI G ++KWDY+ + W+
Sbjct: 121 EKSYVYGPIPHTFDRD-WVAMQTKRMLDMKANPIQGFSAKWDYDKNEWK 168
Score = 121 (47.7 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 35/105 (33%), Positives = 51/105 (48%)
Query: 222 LGEHGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEK 280
L HG+ VV Y D P P + + + + L+EKEK W++LS++EK
Sbjct: 21 LRAHGS--VVKSEDYAFPTYADRRDYPLPDVAHVTMLSASQKALKEKEKADWSSLSRDEK 78
Query: 281 KMLYRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLI 325
LYR F ++FAE R G E+ VG++M I + LI
Sbjct: 79 VQLYRIQFNESFAEMNR-GT---NEWKTVVGMAMFFIGFTALVLI 119
Score = 81 (33.6 bits), Expect = 4.3e-12, Sum P(2) = 4.3e-12
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 359 WENTVTK-MIQLQWNPITGMASKWDYENDRWR 389
W TK M+ ++ NPI G ++KWDY+ + W+
Sbjct: 137 WVAMQTKRMLDMKANPIQGFSAKWDYDKNEWK 168
>UNIPROTKB|Q96KJ9 [details] [associations]
symbol:COX4I2 "Cytochrome c oxidase subunit 4 isoform 2,
mitochondrial" species:9606 "Homo sapiens" [GO:0004129
"cytochrome-c oxidase activity" evidence=IDA] [GO:0045333 "cellular
respiration" evidence=NAS] [GO:0055114 "oxidation-reduction
process" evidence=NAS] [GO:0005751 "mitochondrial respiratory chain
complex IV" evidence=IC] [GO:0006091 "generation of precursor
metabolites and energy" evidence=NAS] InterPro:IPR004203
Pfam:PF02936 GO:GO:0004129 GO:GO:0045333 EMBL:AL117381
GO:GO:0005751 TCDB:3.D.4.11.1 HOVERGEN:HBG051087 KO:K02263
Gene3D:1.10.442.10 InterPro:IPR013288 PRINTS:PR01873
SUPFAM:SSF81406 HOGENOM:HOG000231486 EMBL:AF257180 EMBL:BC057779
IPI:IPI00064655 RefSeq:NP_115998.2 UniGene:Hs.277101
ProteinModelPortal:Q96KJ9 SMR:Q96KJ9 STRING:Q96KJ9 DMDM:73620953
PRIDE:Q96KJ9 Ensembl:ENST00000376075 GeneID:84701 KEGG:hsa:84701
UCSC:uc002wwj.1 CTD:84701 GeneCards:GC20P030225 HGNC:HGNC:16232
HPA:HPA029307 MIM:607976 MIM:612714 neXtProt:NX_Q96KJ9
Orphanet:199337 PharmGKB:PA26783 eggNOG:NOG328739 InParanoid:Q96KJ9
OMA:LVIWWQR OrthoDB:EOG4NZTVD PhylomeDB:Q96KJ9 GenomeRNAi:84701
NextBio:74788 Bgee:Q96KJ9 CleanEx:HS_COX4I2 Genevestigator:Q96KJ9
GermOnline:ENSG00000131055 Uniprot:Q96KJ9
Length = 171
Score = 189 (71.6 bits), Expect = 2.6e-14, P = 2.6e-14
Identities = 39/111 (35%), Positives = 56/111 (50%)
Query: 81 LREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXX 140
L+EKEKG W L+ EK LYR F +TFAE R E+ +G I +
Sbjct: 64 LKEKEKGSWTQLTHAEKVALYRLQFNETFAEMNRRS----NEWKTVMGCVFFFIGFAALV 119
Query: 141 XXXXXXXXXPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
PP P T+T E + +M+ ++ NP+ G+AS+WDYE +W+
Sbjct: 120 IWWQRVYVFPPKPITLTDERKAQQLQRMLDMKVNPVQGLASRWDYEKKQWK 170
Score = 99 (39.9 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 264 LREKEKGHWNALSKEEKKMLYRASFRQTFAEFTR 297
L+EKEKG W L+ EK LYR F +TFAE R
Sbjct: 64 LKEKEKGSWTQLTHAEKVALYRLQFNETFAEMNR 97
Score = 84 (34.6 bits), Expect = 3.6e-08, Sum P(2) = 3.6e-08
Identities = 11/25 (44%), Positives = 20/25 (80%)
Query: 365 KMIQLQWNPITGMASKWDYENDRWR 389
+M+ ++ NP+ G+AS+WDYE +W+
Sbjct: 146 RMLDMKVNPVQGLASRWDYEKKQWK 170
>UNIPROTKB|Q5ZJV5 [details] [associations]
symbol:COX4I1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0004129 "cytochrome-c oxidase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] InterPro:IPR004203
Pfam:PF02936 GO:GO:0005634 GO:GO:0005743 GO:GO:0004129 CTD:1327
GeneTree:ENSGT00390000002407 HOVERGEN:HBG051087 KO:K02263
OMA:MQTKRML Gene3D:1.10.442.10 InterPro:IPR013288 PRINTS:PR01873
SUPFAM:SSF81406 eggNOG:NOG276242 HOGENOM:HOG000231486
OrthoDB:EOG48SGV7 EMBL:AADN02064443 EMBL:AADN02044177 EMBL:AJ720329
IPI:IPI00576496 RefSeq:NP_001025748.1 UniGene:Gga.4877 SMR:Q5ZJV5
STRING:Q5ZJV5 Ensembl:ENSGALT00000009231 Ensembl:ENSGALT00000039002
Ensembl:ENSGALT00000039004 GeneID:415826 KEGG:gga:415826
InParanoid:Q5ZJV5 NextBio:20819371 Uniprot:Q5ZJV5
Length = 171
Score = 186 (70.5 bits), Expect = 5.6e-14, P = 5.6e-14
Identities = 45/137 (32%), Positives = 69/137 (50%)
Query: 57 AYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRH 115
AY D P P + + K + L+EKEK W ALS +EK LYR F +++AE +
Sbjct: 39 AYVDRRDVPLPEVAFVKELSAQQKALKEKEKASWTALSVDEKVELYRIKFNESYAEMNK- 97
Query: 116 GAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGWENTVTK-MIQLQWN 174
G LG V + + VS P+P T + E W + TK M+ ++ N
Sbjct: 98 GTNEWKTVLGGV---LFFLGVSGLILIWQKMYMYGPIPHTFSDE-WLSMQTKRMLDMRIN 153
Query: 175 PITGMASKWDYENDRWR 191
P+ G++++WDYE + W+
Sbjct: 154 PVEGISAQWDYEKNEWK 170
Score = 119 (46.9 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 32/87 (36%), Positives = 42/87 (48%)
Query: 225 HGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKML 283
HG+ VV AY D P P + + K + L+EKEK W ALS +EK L
Sbjct: 24 HGHAGVVKADDFSHPAYVDRRDVPLPEVAFVKELSAQQKALKEKEKASWTALSVDEKVEL 83
Query: 284 YRASFRQTFAEFTRHGAYPDTEYLGGV 310
YR F +++AE + G LGGV
Sbjct: 84 YRIKFNESYAEMNK-GTNEWKTVLGGV 109
Score = 82 (33.9 bits), Expect = 2.7e-11, Sum P(2) = 2.7e-11
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 359 WENTVTK-MIQLQWNPITGMASKWDYENDRWR 389
W + TK M+ ++ NP+ G++++WDYE + W+
Sbjct: 139 WLSMQTKRMLDMRINPVEGISAQWDYEKNEWK 170
>UNIPROTKB|P00423 [details] [associations]
symbol:COX4I1 "Cytochrome c oxidase subunit 4 isoform 1,
mitochondrial" species:9913 "Bos taurus" [GO:0005751 "mitochondrial
respiratory chain complex IV" evidence=IDA] [GO:0004129
"cytochrome-c oxidase activity" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA]
InterPro:IPR004203 Pfam:PF02936 GO:GO:0016021 GO:GO:0005634
GO:GO:0004129 GO:GO:0005751 PDB:1OCC PDB:1OCO PDB:1OCR PDB:1OCZ
PDB:1V54 PDB:1V55 PDB:2DYR PDB:2DYS PDB:2EIJ PDB:2EIK PDB:2EIL
PDB:2EIM PDB:2EIN PDB:2OCC PDB:2Y69 PDB:2YBB PDB:2ZXW PDB:3ABK
PDB:3ABL PDB:3ABM PDB:3AG1 PDB:3AG2 PDB:3AG3 PDB:3AG4 PDB:3ASN
PDB:3ASO PDBsum:1OCC PDBsum:1OCO PDBsum:1OCR PDBsum:1OCZ
PDBsum:1V54 PDBsum:1V55 PDBsum:2DYR PDBsum:2DYS PDBsum:2EIJ
PDBsum:2EIK PDBsum:2EIL PDBsum:2EIM PDBsum:2EIN PDBsum:2OCC
PDBsum:2Y69 PDBsum:2YBB PDBsum:2ZXW PDBsum:3ABK PDBsum:3ABL
PDBsum:3ABM PDBsum:3AG1 PDBsum:3AG2 PDBsum:3AG3 PDBsum:3AG4
PDBsum:3ASN PDBsum:3ASO EMBL:L34015 EMBL:L34012 EMBL:L34013
EMBL:L34014 EMBL:U11070 EMBL:U11067 EMBL:U11068 EMBL:U11069
EMBL:BT021029 EMBL:BC102733 EMBL:K02064 IPI:IPI00714240 PIR:A30618
RefSeq:NP_001001439.1 UniGene:Bt.107085 UniGene:Bt.16025
ProteinModelPortal:P00423 SMR:P00423 IntAct:P00423 PRIDE:P00423
Ensembl:ENSBTAT00000021397 Ensembl:ENSBTAT00000053881 GeneID:281090
KEGG:bta:281090 CTD:1327 GeneTree:ENSGT00390000002407
HOVERGEN:HBG051087 KO:K02263 OMA:MQTKRML EvolutionaryTrace:P00423
NextBio:20805164 ArrayExpress:P00423 Gene3D:1.10.442.10
InterPro:IPR013288 PRINTS:PR01873 SUPFAM:SSF81406 Uniprot:P00423
Length = 169
Score = 178 (67.7 bits), Expect = 4.3e-13, P = 4.3e-13
Identities = 44/139 (31%), Positives = 68/139 (48%)
Query: 55 IAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFT 113
+ +Y D P P + + K + L+EKEK W++LS +EK LYR F+++FAE
Sbjct: 35 LPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMN 94
Query: 114 RHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGWENTVTK-MIQLQ 172
R E+ VG +M I + P+P T E W TK M+ ++
Sbjct: 95 RS----TNEWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEE-WVAKQTKRMLDMK 149
Query: 173 WNPITGMASKWDYENDRWR 191
PI G ++KWDY+ + W+
Sbjct: 150 VAPIQGFSAKWDYDKNEWK 168
Score = 114 (45.2 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 34/102 (33%), Positives = 50/102 (49%)
Query: 225 HGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKML 283
HG+ VV + +Y D P P + + K + L+EKEK W++LS +EK L
Sbjct: 24 HGS--VVKSEDYALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVEL 81
Query: 284 YRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLI 325
YR F+++FAE R E+ VG +M I + LI
Sbjct: 82 YRLKFKESFAEMNRS----TNEWKTVVGAAMFFIGFTALLLI 119
Score = 76 (31.8 bits), Expect = 9.3e-10, Sum P(2) = 9.3e-10
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 357 EGWENTVTK-MIQLQWNPITGMASKWDYENDRWR 389
E W TK M+ ++ PI G ++KWDY+ + W+
Sbjct: 135 EEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWK 168
>UNIPROTKB|E2QUA8 [details] [associations]
symbol:COX4I1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0004129
"cytochrome-c oxidase activity" evidence=IEA] InterPro:IPR004203
Pfam:PF02936 GO:GO:0005634 GO:GO:0005743 GO:GO:0004129 CTD:1327
GeneTree:ENSGT00390000002407 KO:K02263 OMA:MQTKRML
Gene3D:1.10.442.10 InterPro:IPR013288 PRINTS:PR01873
SUPFAM:SSF81406 EMBL:AAEX03004002 RefSeq:XP_536759.1
ProteinModelPortal:E2QUA8 Ensembl:ENSCAFT00000031692 GeneID:479623
KEGG:cfa:479623 NextBio:20854781 Uniprot:E2QUA8
Length = 169
Score = 176 (67.0 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 43/139 (30%), Positives = 68/139 (48%)
Query: 55 IAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFT 113
+ +Y D P P + + K + L+EKEK W++LS +EK LYR F ++FAE
Sbjct: 35 LPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRIKFNESFAEMN 94
Query: 114 RHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGWENTVTK-MIQLQ 172
R E+ VG ++ I + P+P T E W TK M+ ++
Sbjct: 95 RS----TNEWKTVVGTALFFIGFTALILIWEKHYVYGPIPHTFEEE-WVAKQTKRMLDMK 149
Query: 173 WNPITGMASKWDYENDRWR 191
+PI G ++KWDY+ + W+
Sbjct: 150 VSPIQGFSAKWDYDKNEWK 168
Score = 108 (43.1 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 33/102 (32%), Positives = 49/102 (48%)
Query: 225 HGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKML 283
HG+ VV + +Y D P P + + K + L+EKEK W++LS +EK L
Sbjct: 24 HGS--VVKSEDFALPSYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVEL 81
Query: 284 YRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLI 325
YR F ++FAE R E+ VG ++ I + LI
Sbjct: 82 YRIKFNESFAEMNRS----TNEWKTVVGTALFFIGFTALILI 119
Score = 79 (32.9 bits), Expect = 4.9e-09, Sum P(2) = 4.9e-09
Identities = 13/34 (38%), Positives = 22/34 (64%)
Query: 357 EGWENTVTK-MIQLQWNPITGMASKWDYENDRWR 389
E W TK M+ ++ +PI G ++KWDY+ + W+
Sbjct: 135 EEWVAKQTKRMLDMKVSPIQGFSAKWDYDKNEWK 168
>UNIPROTKB|I3LER5 [details] [associations]
symbol:COX4I1 "Cytochrome c oxidase subunit 4 isoform 1,
mitochondrial" species:9823 "Sus scrofa" [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0004129 "cytochrome-c oxidase activity" evidence=IEA]
InterPro:IPR004203 Pfam:PF02936 GO:GO:0005634 GO:GO:0005743
GO:GO:0004129 GeneTree:ENSGT00390000002407 KO:K02263 OMA:MQTKRML
Gene3D:1.10.442.10 InterPro:IPR013288 PRINTS:PR01873
SUPFAM:SSF81406 EMBL:FP565392 RefSeq:XP_003355778.2
Ensembl:ENSSSCT00000029520 GeneID:100624067 KEGG:ssc:100624067
Uniprot:I3LER5
Length = 169
Score = 174 (66.3 bits), Expect = 1.2e-12, P = 1.2e-12
Identities = 43/139 (30%), Positives = 66/139 (47%)
Query: 55 IAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFT 113
+ Y D P P + + K + L+EKEK W++LS +EK LYR F ++FAE
Sbjct: 35 LPVYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSMDEKVELYRLKFNESFAEMN 94
Query: 114 RHGAYPDTEYLGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGWENTVTK-MIQLQ 172
R E+ VG ++ I + P+P T E W TK M+ ++
Sbjct: 95 RS----TNEWKTIVGTALFFIGFTALILIWEKHYVYGPIPHTFEEE-WVAKQTKRMLDMK 149
Query: 173 WNPITGMASKWDYENDRWR 191
PI G ++KWDY+ + W+
Sbjct: 150 VAPIQGFSAKWDYDKNEWK 168
Score = 109 (43.4 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 33/102 (32%), Positives = 48/102 (47%)
Query: 225 HGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKML 283
HG+ VV + Y D P P + + K + L+EKEK W++LS +EK L
Sbjct: 24 HGS--VVKSEDYALPVYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSMDEKVEL 81
Query: 284 YRASFRQTFAEFTRHGAYPDTEYLGGVGLSMVVIAEITIFLI 325
YR F ++FAE R E+ VG ++ I + LI
Sbjct: 82 YRLKFNESFAEMNRS----TNEWKTIVGTALFFIGFTALILI 119
Score = 76 (31.8 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 357 EGWENTVTK-MIQLQWNPITGMASKWDYENDRWR 389
E W TK M+ ++ PI G ++KWDY+ + W+
Sbjct: 135 EEWVAKQTKRMLDMKVAPIQGFSAKWDYDKNEWK 168
>UNIPROTKB|E1B8K7 [details] [associations]
symbol:COX4I2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031966 "mitochondrial membrane" evidence=IEA]
[GO:0004129 "cytochrome-c oxidase activity" evidence=IEA]
InterPro:IPR004203 Pfam:PF02936 GO:GO:0031966 GO:GO:0004129
GeneTree:ENSGT00390000002407 KO:K02263 Gene3D:1.10.442.10
InterPro:IPR013288 PRINTS:PR01873 SUPFAM:SSF81406 CTD:84701
OMA:LVIWWQR EMBL:DAAA02036387 IPI:IPI00688533 RefSeq:NP_001180115.1
UniGene:Bt.30618 Ensembl:ENSBTAT00000021525 GeneID:618339
KEGG:bta:618339 NextBio:20901127 Uniprot:E1B8K7
Length = 171
Score = 168 (64.2 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 37/111 (33%), Positives = 52/111 (46%)
Query: 81 LREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXX 140
L+EKEKG W LS EK LYR F QTFAE R E+ +G +
Sbjct: 64 LKEKEKGSWTQLSHAEKVALYRLQFHQTFAEMNRRS----NEWKTVMGCVFFFCGFTGLL 119
Query: 141 XXXXXXXXXPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
P T+T E + +++ ++ NP+ G+AS+WDYE W+
Sbjct: 120 IWWQRVYVFRKKPITLTDEWKAQQLQRILDMKGNPVQGLASRWDYERKEWK 170
Score = 105 (42.0 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 21/34 (61%), Positives = 22/34 (64%)
Query: 264 LREKEKGHWNALSKEEKKMLYRASFRQTFAEFTR 297
L+EKEKG W LS EK LYR F QTFAE R
Sbjct: 64 LKEKEKGSWTQLSHAEKVALYRLQFHQTFAEMNR 97
Score = 82 (33.9 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 359 WE-NTVTKMIQLQWNPITGMASKWDYENDRWR 389
W+ + +++ ++ NP+ G+AS+WDYE W+
Sbjct: 139 WKAQQLQRILDMKGNPVQGLASRWDYERKEWK 170
>MGI|MGI:2135755 [details] [associations]
symbol:Cox4i2 "cytochrome c oxidase subunit IV isoform 2"
species:10090 "Mus musculus" [GO:0004129 "cytochrome-c oxidase
activity" evidence=ISO;ISA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005751 "mitochondrial respiratory chain complex
IV" evidence=ISA] [GO:0015992 "proton transport" evidence=ISA]
[GO:0016020 "membrane" evidence=IEA] [GO:0031966 "mitochondrial
membrane" evidence=IDA] [GO:0034220 "ion transmembrane transport"
evidence=ISA] [GO:0055114 "oxidation-reduction process"
evidence=ISO;ISA] InterPro:IPR004203 Pfam:PF02936 MGI:MGI:2135755
GO:GO:0004129 GO:GO:0005751 GeneTree:ENSGT00390000002407
HOVERGEN:HBG051087 KO:K02263 Gene3D:1.10.442.10 InterPro:IPR013288
PRINTS:PR01873 SUPFAM:SSF81406 HOGENOM:HOG000231486 CTD:84701
eggNOG:NOG328739 OMA:LVIWWQR OrthoDB:EOG4NZTVD EMBL:AF271382
EMBL:BC049623 IPI:IPI00127204 RefSeq:NP_444321.1 UniGene:Mm.196668
ProteinModelPortal:Q91W29 SMR:Q91W29 STRING:Q91W29 PaxDb:Q91W29
PRIDE:Q91W29 Ensembl:ENSMUST00000010020 Ensembl:ENSMUST00000109821
GeneID:84682 KEGG:mmu:84682 InParanoid:Q91W29 NextBio:350931
Bgee:Q91W29 CleanEx:MM_COX4I2 Genevestigator:Q91W29
GermOnline:ENSMUSG00000009876 Uniprot:Q91W29
Length = 172
Score = 164 (62.8 bits), Expect = 1.5e-11, P = 1.5e-11
Identities = 36/111 (32%), Positives = 52/111 (46%)
Query: 81 LREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXX 140
L+EKEKG W LS+ EK LYR F +TFAE E+ +G I +
Sbjct: 65 LKEKEKGSWTQLSQAEKVALYRLQFHETFAEMNHRS----NEWKTVMGCVFFFIGFTALV 120
Query: 141 XXXXXXXXXPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
P T+T E + +++ ++ NPI G+A+ WDYE W+
Sbjct: 121 IWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLAAHWDYEKKEWK 171
Score = 99 (39.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 264 LREKEKGHWNALSKEEKKMLYRASFRQTFAE 294
L+EKEKG W LS+ EK LYR F +TFAE
Sbjct: 65 LKEKEKGSWTQLSQAEKVALYRLQFHETFAE 95
Score = 75 (31.5 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 365 KMIQLQWNPITGMASKWDYENDRWR 389
+++ ++ NPI G+A+ WDYE W+
Sbjct: 147 RLLDMKSNPIQGLAAHWDYEKKEWK 171
>RGD|69422 [details] [associations]
symbol:Cox4i2 "cytochrome c oxidase subunit IV isoform 2 (lung)"
species:10116 "Rattus norvegicus" [GO:0004129 "cytochrome-c oxidase
activity" evidence=ISO;TAS] [GO:0005739 "mitochondrion"
evidence=ISO] [GO:0005751 "mitochondrial respiratory chain complex
IV" evidence=TAS] [GO:0008150 "biological_process" evidence=ND]
[GO:0031966 "mitochondrial membrane" evidence=ISO]
InterPro:IPR004203 Pfam:PF02936 RGD:69422 GO:GO:0004129
GO:GO:0005751 GeneTree:ENSGT00390000002407 HOVERGEN:HBG051087
KO:K02263 Gene3D:1.10.442.10 InterPro:IPR013288 PRINTS:PR01873
SUPFAM:SSF81406 HOGENOM:HOG000231486 CTD:84701 eggNOG:NOG328739
OrthoDB:EOG4NZTVD EMBL:AF255347 IPI:IPI00208330 RefSeq:NP_445924.1
UniGene:Rn.7214 ProteinModelPortal:Q91Y94 SMR:Q91Y94 STRING:Q91Y94
PRIDE:Q91Y94 Ensembl:ENSRNOT00000010418 GeneID:84683 KEGG:rno:84683
UCSC:RGD:69422 InParanoid:Q91Y94 NextBio:617266
Genevestigator:Q91Y94 GermOnline:ENSRNOG00000007827 Uniprot:Q91Y94
Length = 172
Score = 159 (61.0 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 35/111 (31%), Positives = 52/111 (46%)
Query: 81 LREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSXXX 140
L+EKEKG W LS+ EK LYR F +TFAE E+ +G I +
Sbjct: 65 LKEKEKGSWAQLSQAEKVALYRLQFHETFAEMNHRS----NEWKTVMGCVFFFIGFTALV 120
Query: 141 XXXXXXXXXPPLPATMTPEGWENTVTKMIQLQWNPITGMASKWDYENDRWR 191
P T+T E + +++ ++ NPI G+++ WDYE W+
Sbjct: 121 IWWQRVYVFPKKVVTLTEERKAQQLQRLLDMKSNPIQGLSAHWDYEKKEWK 171
Score = 97 (39.2 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 19/31 (61%), Positives = 22/31 (70%)
Query: 264 LREKEKGHWNALSKEEKKMLYRASFRQTFAE 294
L+EKEKG W LS+ EK LYR F +TFAE
Sbjct: 65 LKEKEKGSWAQLSQAEKVALYRLQFHETFAE 95
Score = 72 (30.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 365 KMIQLQWNPITGMASKWDYENDRWR 389
+++ ++ NPI G+++ WDYE W+
Sbjct: 147 RLLDMKSNPIQGLSAHWDYEKKEWK 171
>UNIPROTKB|H3BPG0 [details] [associations]
symbol:COX4I1 "Cytochrome c oxidase subunit 4 isoform 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0004129
"cytochrome-c oxidase activity" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0007584 "response
to nutrient" evidence=IEA] InterPro:IPR004203 Pfam:PF02936
GO:GO:0005743 GO:GO:0007584 GO:GO:0004129 Gene3D:1.10.442.10
InterPro:IPR013288 PRINTS:PR01873 SUPFAM:SSF81406 HGNC:HGNC:2265
ChiTaRS:COX4I1 EMBL:AC018695 Ensembl:ENST00000566405 Bgee:H3BPG0
Uniprot:H3BPG0
Length = 108
Score = 117 (46.2 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 34/104 (32%), Positives = 49/104 (47%)
Query: 65 PFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEY 123
P P + + K + L+EKEK W++LS +EK LYR F+++FAE R G+ E+
Sbjct: 7 PLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNR-GS---NEW 62
Query: 124 LGSVGLSMVVIAVSXXXXXXXXXXXXPPLPATMTPEGWENTVTK 167
VG +M I + PLP + E W TK
Sbjct: 63 KTVVGGAMFFIGFTALVIMWQKHYVYGPLPQSFDKE-WVAKQTK 105
Score = 109 (43.4 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 27/75 (36%), Positives = 42/75 (56%)
Query: 248 PFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEY 306
P P + + K + L+EKEK W++LS +EK LYR F+++FAE R G+
Sbjct: 7 PLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMNR-GSNEWKTV 65
Query: 307 LGG----VGLSMVVI 317
+GG +G + +VI
Sbjct: 66 VGGAMFFIGFTALVI 80
>UNIPROTKB|H3BN72 [details] [associations]
symbol:COX4I1 "Cytochrome c oxidase subunit 4 isoform 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0004129
"cytochrome-c oxidase activity" evidence=IEA] InterPro:IPR004203
Pfam:PF02936 GO:GO:0004129 Gene3D:1.10.442.10 InterPro:IPR013288
PRINTS:PR01873 SUPFAM:SSF81406 HGNC:HGNC:2265 ChiTaRS:COX4I1
EMBL:AC018695 ProteinModelPortal:H3BN72 SMR:H3BN72
Ensembl:ENST00000564903 Bgee:H3BN72 Uniprot:H3BN72
Length = 126
Score = 114 (45.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 238 IAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFT 296
+ AY D P P + + K + L+EKEK W++LS +EK LYR F+++FAE
Sbjct: 35 LPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMN 94
Query: 297 RHGAYPDTEYLGG----VGLSMVVI 317
R G+ +GG +G + +VI
Sbjct: 95 R-GSNEWKTVVGGAMFFIGFTALVI 118
Score = 112 (44.5 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 25 AIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLRE 83
++V ++++ST + + VV + AY D P P + + K + L+E
Sbjct: 8 SLVGKRAISTSVCV---RAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKE 64
Query: 84 KEKGHWNALSKEEKKMLYRASFRQTFAEFTR 114
KEK W++LS +EK LYR F+++FAE R
Sbjct: 65 KEKASWSSLSMDEKVELYRIKFKESFAEMNR 95
>UNIPROTKB|H3BNV9 [details] [associations]
symbol:COX4I1 "Cytochrome c oxidase subunit 4 isoform 1,
mitochondrial" species:9606 "Homo sapiens" [GO:0004129
"cytochrome-c oxidase activity" evidence=IEA] InterPro:IPR004203
Pfam:PF02936 GO:GO:0004129 Gene3D:1.10.442.10 InterPro:IPR013288
PRINTS:PR01873 SUPFAM:SSF81406 HGNC:HGNC:2265 ChiTaRS:COX4I1
EMBL:AC018695 ProteinModelPortal:H3BNV9 SMR:H3BNV9
Ensembl:ENST00000568794 Bgee:H3BNV9 Uniprot:H3BNV9
Length = 139
Score = 114 (45.2 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 30/85 (35%), Positives = 46/85 (54%)
Query: 238 IAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFT 296
+ AY D P P + + K + L+EKEK W++LS +EK LYR F+++FAE
Sbjct: 35 LPAYMDRRDHPLPEVAHVKHLSASQKALKEKEKASWSSLSMDEKVELYRIKFKESFAEMN 94
Query: 297 RHGAYPDTEYLGG----VGLSMVVI 317
R G+ +GG +G + +VI
Sbjct: 95 R-GSNEWKTVVGGAMFFIGFTALVI 118
Score = 112 (44.5 bits), Expect = 6.9e-06, P = 6.9e-06
Identities = 29/91 (31%), Positives = 48/91 (52%)
Query: 25 AIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRY-KVFDSDLLLLRE 83
++V ++++ST + + VV + AY D P P + + K + L+E
Sbjct: 8 SLVGKRAISTSVCV---RAHESVVKSEDFSLPAYMDRRDHPLPEVAHVKHLSASQKALKE 64
Query: 84 KEKGHWNALSKEEKKMLYRASFRQTFAEFTR 114
KEK W++LS +EK LYR F+++FAE R
Sbjct: 65 KEKASWSSLSMDEKVELYRIKFKESFAEMNR 95
>UNIPROTKB|Q95283 [details] [associations]
symbol:COX4I1 "Cytochrome c oxidase subunit 4 isoform 1,
mitochondrial" species:9823 "Sus scrofa" [GO:0005743 "mitochondrial
inner membrane" evidence=IEA] [GO:0004129 "cytochrome-c oxidase
activity" evidence=IEA] InterPro:IPR004203 Pfam:PF02936
GO:GO:0005743 GO:GO:0004129 Gene3D:1.10.442.10 InterPro:IPR013288
PRINTS:PR01873 SUPFAM:SSF81406 EMBL:Z81228 PRIDE:Q95283
Uniprot:Q95283
Length = 97
Score = 99 (39.9 bits), Expect = 0.00018, P = 0.00018
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 55 IAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFT 113
+ Y D P P + + K + +EKEK W++LS +EK LYR F ++FAE
Sbjct: 35 LPVYVDRRDYPLPDVAHVKNLSASQKAXKEKEKASWSSLSMDEKVELYRLKFNESFAEMN 94
Query: 114 R 114
R
Sbjct: 95 R 95
Score = 99 (39.9 bits), Expect = 0.00018, P = 0.00018
Identities = 22/61 (36%), Positives = 32/61 (52%)
Query: 238 IAAYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFT 296
+ Y D P P + + K + +EKEK W++LS +EK LYR F ++FAE
Sbjct: 35 LPVYVDRRDYPLPDVAHVKNLSASQKAXKEKEKASWSSLSMDEKVELYRLKFNESFAEMN 94
Query: 297 R 297
R
Sbjct: 95 R 95
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.441 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 415 382 0.00091 117 3 11 22 0.40 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 613 (65 KB)
Total size of DFA: 273 KB (2138 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 28.92u 0.14s 29.06t Elapsed: 00:00:02
Total cpu time: 28.92u 0.14s 29.06t Elapsed: 00:00:02
Start: Thu Aug 15 12:36:19 2013 End: Thu Aug 15 12:36:21 2013