RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2997
         (415 letters)



>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 144

 Score =  142 bits (361), Expect = 6e-42
 Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 57  AYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRH 115
           +Y D    P P + + K   +    L+EKEK  W++LS +EK  LYR  F+++FAE  R 
Sbjct: 12  SYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRS 71

Query: 116 GAYPDTEYLGSVGLSMVVIAVSLFYYAFLKAFFLPPLPATMTPEGWENTVTKMIQLQWNP 175
                 E+   VG +M  I  +     + K +   P+P T   E       +M+ ++  P
Sbjct: 72  TN----EWKTVVGAAMFFIGFTALLLIWEKHYVYGPIPHTFEEEWVAKQTKRMLDMKVAP 127

Query: 176 ITGMASKWDYENDRWR 191
           I G ++KWDY+ + W+
Sbjct: 128 IQGFSAKWDYDKNEWK 143



 Score =  132 bits (335), Expect = 3e-38
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 20/151 (13%)

Query: 240 AYGDNVLCPFPAIRY-KVFDSDLLLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRH 298
           +Y D    P P + + K   +    L+EKEK  W++LS +EK  LYR  F+++FAE  R 
Sbjct: 12  SYVDRRDYPLPDVAHVKNLSASQKALKEKEKASWSSLSIDEKVELYRLKFKESFAEMNRS 71

Query: 299 GAYPDTEYLGGVGLSMVVIAEITIFLITNFLSHSTVSLFYYAFLKAFFLPPLPTTMTPEG 358
                            V+     F+          +     + K +   P+P T   E 
Sbjct: 72  TNE-----------WKTVVGAAMFFI--------GFTALLLIWEKHYVYGPIPHTFEEEW 112

Query: 359 WENTVTKMIQLQWNPITGMASKWDYENDRWR 389
                 +M+ ++  PI G ++KWDY+ + W+
Sbjct: 113 VAKQTKRMLDMKVAPIQGFSAKWDYDKNEWK 143


>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A
           chain, domains 1 and 2 {Paracoccus denitrificans [TaxId:
           266]}
          Length = 85

 Score = 30.3 bits (68), Expect = 0.080
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 156 MTPEGWENTVTKMIQLQWNPITG 178
            TPEGW+ TVT+M++     +  
Sbjct: 31  KTPEGWDMTVTRMMRNHGVALEP 53



 Score = 30.3 bits (68), Expect = 0.080
 Identities = 9/23 (39%), Positives = 14/23 (60%)

Query: 354 MTPEGWENTVTKMIQLQWNPITG 376
            TPEGW+ TVT+M++     +  
Sbjct: 31  KTPEGWDMTVTRMMRNHGVALEP 53


>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A
           chain, domains 1 and 2 {Pseudomonas putida [TaxId: 303]}
          Length = 84

 Score = 30.3 bits (68), Expect = 0.089
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 156 MTPEGWENTVTKMIQLQWNPITG 178
            TPEGW  ++ +M  +    I+ 
Sbjct: 31  KTPEGWLMSIARMQVMHGLQISD 53



 Score = 30.3 bits (68), Expect = 0.089
 Identities = 7/23 (30%), Positives = 12/23 (52%)

Query: 354 MTPEGWENTVTKMIQLQWNPITG 376
            TPEGW  ++ +M  +    I+ 
Sbjct: 31  KTPEGWLMSIARMQVMHGLQISD 53


>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 239

 Score = 27.9 bits (61), Expect = 2.1
 Identities = 13/128 (10%), Positives = 29/128 (22%), Gaps = 2/128 (1%)

Query: 19  GWINRHAIVQQKSVSTLTRLFPFTGNREVVGHGRNGIAAYGDNVLCPFPAIRYKVFDSDL 78
           G        +   +  +      T +       +      G         I    F  + 
Sbjct: 97  GIPIEIHNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNG--YGAKLCNIFSTEFILET 154

Query: 79  LLLREKEKGHWNALSKEEKKMLYRASFRQTFAEFTRHGAYPDTEYLGSVGLSMVVIAVSL 138
             L   +K      +        + +  +    +T+    PD    G   L   ++ V  
Sbjct: 155 ADLNVGQKYVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMR 214

Query: 139 FYYAFLKA 146
                +  
Sbjct: 215 RRVYDING 222


>d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur
           (beta) subunit {Escherichia coli [TaxId: 562]}
          Length = 244

 Score = 27.1 bits (59), Expect = 3.2
 Identities = 8/28 (28%), Positives = 10/28 (35%), Gaps = 1/28 (3%)

Query: 172 QWNPITGMASKWDYENDRWRPGFKP-CV 198
           + N       K     DR   G +P CV
Sbjct: 148 RLNKEDNRVYKCTLCVDRVSVGQEPACV 175


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.448 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,723,024
Number of extensions: 83380
Number of successful extensions: 242
Number of sequences better than 10.0: 1
Number of HSP's gapped: 238
Number of HSP's successfully gapped: 12
Length of query: 415
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 327
Effective length of database: 1,199,356
Effective search space: 392189412
Effective search space used: 392189412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.7 bits)