BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy300
(451 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HUJ|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUJ|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 261 bits (668), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 120/176 (68%), Positives = 144/176 (81%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KKG LR+V N FP
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITREETLNPIIQDTKKGKLRFVRNCFP 85
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI NYGA PQTWE+P+ + T GD DPIDVLEIGE IA G++ QVKALG++ L
Sbjct: 86 HHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMAL 145
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN
Sbjct: 146 LDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPEN 201
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 59
>pdb|1WGI|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGI|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1WGJ|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1E6A|A Chain A, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|1E6A|B Chain B, Fluoride-Inhibited Substrate Complex Of Saccharomyces
Cerevisiae Inorganic Pyrophosphatase
pdb|2IHP|A Chain A, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|2IHP|B Chain B, Yeast Inorganic Pyrophosphatase With Magnesium And
Phosphate
pdb|1E9G|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1E9G|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 286
Score = 261 bits (668), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 120/176 (68%), Positives = 144/176 (81%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KKG LR+V N FP
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFP 85
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI NYGA PQTWE+P+ + T GD DPIDVLEIGE IA G++ QVKALG++ L
Sbjct: 86 HHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMAL 145
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN
Sbjct: 146 LDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPEN 201
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 59
>pdb|1M38|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1M38|B Chain B, Structure Of Inorganic Pyrophosphatase
Length = 287
Score = 261 bits (667), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 120/176 (68%), Positives = 144/176 (81%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KKG LR+V N FP
Sbjct: 27 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFP 86
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI NYGA PQTWE+P+ + T GD DPIDVLEIGE IA G++ QVKALG++ L
Sbjct: 87 HHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMAL 146
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN
Sbjct: 147 LDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPEN 202
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 27 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 60
>pdb|1HUK|A Chain A, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
pdb|1HUK|B Chain B, Refined Structure Of Yeast Inorganic Pyrophosphatase And
Its K61r Mutant
Length = 281
Score = 261 bits (667), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 120/176 (68%), Positives = 144/176 (81%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KKG LR+V N FP
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFP 85
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI NYGA PQTWE+P+ + T GD DPIDVLEIGE IA G++ QVKALG++ L
Sbjct: 86 HHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMAL 145
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN
Sbjct: 146 LDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPEN 201
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 59
>pdb|8PRK|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|8PRK|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
Length = 287
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 119/176 (67%), Positives = 144/176 (81%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KKG L++V N FP
Sbjct: 27 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLKFVRNCFP 86
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI NYGA PQTWE+P+ + T GD DPIDVLEIGE IA G++ QVKALG++ L
Sbjct: 87 HHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMAL 146
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN
Sbjct: 147 LDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPEN 202
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 27 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 60
>pdb|2IK1|A Chain A, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
pdb|2IK1|B Chain B, Yeast Inorganic Pyrophosphatase Variant Y93f With
Magnesium And Phosphate
Length = 286
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 119/176 (67%), Positives = 144/176 (81%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KKG LR+V N FP
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFP 85
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI N+GA PQTWE+P+ + T GD DPIDVLEIGE IA G++ QVKALG++ L
Sbjct: 86 HHGYIHNFGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMAL 145
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN
Sbjct: 146 LDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPEN 201
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 59
>pdb|2IK0|A Chain A, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
pdb|2IK0|B Chain B, Yeast Inorganic Pyrophosphatase Variant E48d With
Magnesium And Phosphate
Length = 286
Score = 260 bits (664), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 119/176 (67%), Positives = 144/176 (81%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ ++ IFNMVV+IPRWTNAK+EI E LNPI QD KKG LR+V N FP
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVDIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFP 85
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI NYGA PQTWE+P+ + T GD DPIDVLEIGE IA G++ QVKALG++ L
Sbjct: 86 HHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMAL 145
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN
Sbjct: 146 LDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPEN 201
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/34 (67%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ ++ IFNMVV+IPRWTNAK+E+
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVDIPRWTNAKLEI 59
>pdb|117E|A Chain A, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|117E|B Chain B, The R78k And D117e Active Site Variants Of Saccharomyces
Cerevisiae Soluble Inorganic Pyrophosphatase: Structural
Studies And Mechanistic Implications
pdb|2IK4|A Chain A, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
pdb|2IK4|B Chain B, Yeast Inorganic Pyrophosphatase Variant D117e With
Magnesium And Phosphate
Length = 286
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 119/176 (67%), Positives = 144/176 (81%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KKG LR+V N FP
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFP 85
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI NYGA PQTWE+P+ + T GD +PIDVLEIGE IA G++ QVKALG++ L
Sbjct: 86 HHGYIHNYGAFPQTWEDPNVSHPETKAVGDNEPIDVLEIGETIAYTGQVKQVKALGIMAL 145
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN
Sbjct: 146 LDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPEN 201
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 59
>pdb|2IK6|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
pdb|2IK6|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120e With
Magnesium And Phosphate
Length = 286
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 119/176 (67%), Positives = 144/176 (81%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KKG LR+V N FP
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFP 85
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI NYGA PQTWE+P+ + T GD DPI+VLEIGE IA G++ QVKALG++ L
Sbjct: 86 HHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIEVLEIGETIAYTGQVKQVKALGIMAL 145
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN
Sbjct: 146 LDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPEN 201
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 59
>pdb|2IK9|A Chain A, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
pdb|2IK9|B Chain B, Yeast Inorganic Pyrophosphatase Variant D152e With
Magnesium And Phosphate
Length = 286
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 119/176 (67%), Positives = 144/176 (81%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KKG LR+V N FP
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFP 85
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI NYGA PQTWE+P+ + T GD DPIDVLEIGE IA G++ QVKALG++ L
Sbjct: 86 HHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMAL 145
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+T+WK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN
Sbjct: 146 LDEGETEWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPEN 201
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 59
>pdb|2IK2|A Chain A, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
pdb|2IK2|B Chain B, Yeast Inorganic Pyrophosphatase Variant D115e With
Magnesium And Phosphate
Length = 286
Score = 259 bits (663), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 119/176 (67%), Positives = 144/176 (81%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KKG LR+V N FP
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFP 85
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI NYGA PQTWE+P+ + T G+ DPIDVLEIGE IA G++ QVKALG++ L
Sbjct: 86 HHGYIHNYGAFPQTWEDPNVSHPETKAVGENDPIDVLEIGETIAYTGQVKQVKALGIMAL 145
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN
Sbjct: 146 LDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPEN 201
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 59
>pdb|2IK7|A Chain A, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
pdb|2IK7|B Chain B, Yeast Inorganic Pyrophosphatase Variant D120n With
Magnesium And Phosphate
Length = 286
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 119/176 (67%), Positives = 144/176 (81%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KKG LR+V N FP
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFP 85
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI NYGA PQTWE+P+ + T GD DPI+VLEIGE IA G++ QVKALG++ L
Sbjct: 86 HHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPINVLEIGETIAYTGQVKQVKALGIMAL 145
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN
Sbjct: 146 LDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPEN 201
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 59
>pdb|1YPP|A Chain A, Acid Anhydride Hydrolase
pdb|1YPP|B Chain B, Acid Anhydride Hydrolase
Length = 286
Score = 259 bits (662), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 119/176 (67%), Positives = 143/176 (81%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KG LR+V N FP
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTAKGKLRFVRNCFP 85
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI NYGA PQTWE+P+ + T GD DPIDVLEIGE IA G++ QVKALG++ L
Sbjct: 86 HHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMAL 145
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPEN
Sbjct: 146 LDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPEN 201
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 24/34 (70%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 26 VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 59
>pdb|1PYP|A Chain A, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
pdb|1PYP|B Chain B, X-Ray Diffraction Study Of Inorganic Pyrophosphatase From
Baker,S Yeast At The 3 Angstroms Resolution (Russian)
Length = 285
Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 115/176 (65%), Positives = 143/176 (81%), Gaps = 1/176 (0%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S FHDIPLY++ +D IFNMVVEIPRWTNAK+EI E LNPI Q+ K G LR+V N FP
Sbjct: 26 VSAFHDIPLYADKEDNIFNMVVEIPRWTNAKLEITKEETLNPIIQNTK-GKLRFVRNCFP 84
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
HHGYI NYGA PQTWE+P+ + T GD +PIDVL+IGE IA G++ +VKALG++ L
Sbjct: 85 HHGYIHNYGAFPQTWEDPNVSHPETKAVGDNNPIDVLQIGETIAYTGQVKEVKALGIMAL 144
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+AT+EWF+IYKIPDGKPEN
Sbjct: 145 LDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATDEWFRIYKIPDGKPEN 200
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 31/34 (91%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+S FHDIPLY++ +D IFNMVVEIPRWTNAK+E+
Sbjct: 26 VSAFHDIPLYADKEDNIFNMVVEIPRWTNAKLEI 59
>pdb|1UDE|A Chain A, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|B Chain B, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
pdb|1UDE|C Chain C, Crystal Structure Of The Inorganic Pyrophosphatase From
The Hyperthermophilic Archaeon Pyrococcus Horikoshii Ot3
Length = 195
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 83/174 (47%), Gaps = 27/174 (15%)
Query: 163 LISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVF 222
+++PFHD+ NV + ++ ++ EIP+ + K E+ D + G L+ ++
Sbjct: 17 MMNPFHDLEPGPNVPEVVYALI-EIPKGSRNKYEL-----------DKETGLLKLDRVLY 64
Query: 223 PHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIG 282
Y +YG +P+TW DGDP D++ I II+ + +G+
Sbjct: 65 TPFHYPVDYGIIPRTWYE------------DGDPFDIMVIMREPTYPLTIIEARPIGLFK 112
Query: 283 LIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGK 336
+ID G D+K++A+ V DP D++D+ F L +FK YK +GK
Sbjct: 113 MIDSGDKDYKVLAVPVEDPYFKDWKDISDVPKAF---LDEIAHFFKRYKELEGK 163
>pdb|3I98|A Chain A, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|B Chain B, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|C Chain C, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|D Chain D, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|E Chain E, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3I98|F Chain F, X-Ray Crystallographic Structure Of Inorganic
Pyrophosphatase At 298k From Archaeon Thermococcus
Thioreducens
pdb|3Q4W|A Chain A, The Structure Of Archaeal Inorganic Pyrophosphatase In
Complex With Substrate
pdb|3Q5V|A Chain A, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q5V|B Chain B, The Structure Of Inorganic Pyrophosphatase From
Thermococcus Thioreducens In Complex With Magnesium And
Sulfate
pdb|3Q9M|A Chain A, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|B Chain B, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q9M|C Chain C, The Structure Archaeal Inorganic Pyrophosphatase In
Complex With Pyrophosphate
pdb|3Q3L|A Chain A, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|B Chain B, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|C Chain C, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|D Chain D, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|E Chain E, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3Q3L|F Chain F, The Neutron Crystallographic Structure Of Inorganic
Pyrophosphatase From Thermococcus Thioreducens
pdb|3R5U|A Chain A, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5U|B Chain B, The Structure Of Manganese Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase
pdb|3R5V|A Chain A, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|B Chain B, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|C Chain C, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|D Chain D, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|E Chain E, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
pdb|3R5V|F Chain F, The Structure Of Calcium Bound Thermococcus Thioreducens
Inorganic Pyrophosphatase At 298k
Length = 178
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 50/184 (27%), Positives = 86/184 (46%), Gaps = 32/184 (17%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
++PFH++ V + ++ ++ EIP+ + K E+ D K G L+ ++
Sbjct: 1 MNPFHELEPGPEVPEVVYALI-EIPKGSRNKYEL-----------DKKTGLLKLDRVLYS 48
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
Y +YG +PQTW + DGDP D++ I II+ + +G++ +
Sbjct: 49 PFFYPVDYGIIPQTWYD------------DGDPFDIMVIMREPVYPLTIIEARPIGIMKM 96
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVLNT 343
D G DWK++A+ V DP D++D+ F L +F+ YK GK T
Sbjct: 97 EDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAF---LDEIAHFFQRYKELQGK-----TT 148
Query: 344 RVEG 347
++EG
Sbjct: 149 KIEG 152
>pdb|3Q46|A Chain A, Magnesium Activated Inorganic Pyrophosphatase From
Thermococcus Thioreducens Bound To Hydrolyzed Product At
0.99 Angstrom Resolution
Length = 178
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 32/184 (17%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
++PFH++ V + ++ ++ EIP+ + K E+ D G L+ ++
Sbjct: 1 MNPFHELEPGPEVPEVVYALI-EIPKGSRNKYEL-----------DKATGLLKLDRVLYS 48
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
Y +YG +PQTW + DGDP D++ I II+ + +G++ +
Sbjct: 49 PFFYPVDYGIIPQTWYD------------DGDPFDIMVIMREPVYPLTIIEARPIGIMKM 96
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVLNT 343
D G DWK++A+ V DP D++D+ F L +F+ YK GK T
Sbjct: 97 EDSGDKDWKVLAVPVEDPYFNDWKDISDVPKAF---LDEIAHFFQRYKELQGK-----TT 148
Query: 344 RVEG 347
++EG
Sbjct: 149 KIEG 152
>pdb|3R6E|A Chain A, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|B Chain B, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|C Chain C, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|D Chain D, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|E Chain E, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
pdb|3R6E|F Chain F, The Structure Of Thermococcus Thioreducens' Inorganic
Pyrophosphatase Bound To Sulfate
Length = 178
Score = 65.1 bits (157), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 32/183 (17%)
Query: 165 SPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPH 224
+PFH++ V + ++ ++ EIP+ + K E+ D K G L+ ++
Sbjct: 2 NPFHELEPGPEVPEVVYALI-EIPKGSRNKYEL-----------DKKTGLLKLDRVLYSP 49
Query: 225 HGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLI 284
Y +YG +PQTW + DGDP D+ I II+ + +G+
Sbjct: 50 FFYPVDYGIIPQTWYD------------DGDPFDIXVIXREPVYPLTIIEARPIGIXKXE 97
Query: 285 DEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVLNTR 344
D G DWK++A+ V DP D++D+ F L +F+ YK GK T+
Sbjct: 98 DSGDKDWKVLAVPVEDPYFNDWKDISDVPKAF---LDEIAHFFQRYKELQGK-----TTK 149
Query: 345 VEG 347
+EG
Sbjct: 150 IEG 152
>pdb|2CJK|A Chain A, Structure Of The Rna Binding Domain Of Hrp1 In Complex
With Rna
pdb|2KM8|C Chain C, Interdomain Rrm Packing Contributes To Rna Recognition In
The Rna15, Hrp1, Anchor Rna 3' Processing Ternary
Complex
Length = 167
Score = 65.1 bits (157), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 74/133 (55%), Gaps = 29/133 (21%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 92
++FI L + TE+ +E+FG+YG + D +++K+ A G+ +G GF+++ K S+V ++K
Sbjct: 5 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF-EKPSSVDEVVK 63
Query: 93 S-----------------NKKPYKGKI---------TEEEFKEHFGQYGDIIDAQLLKNA 126
+ +++ GKI +EF+E F Q+G IIDAQL+ +
Sbjct: 64 TQHILDGKVIDPKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK 123
Query: 127 D-GKLKGCGFINY 138
D G+ +G GF+ Y
Sbjct: 124 DTGQSRGFGFVTY 136
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAIL 91
G++F+ + + +EF+E F Q+G IIDAQL+ + D G+ +G GF+ Y + AV +
Sbjct: 88 GKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY-DSADAVDRVC 146
Query: 92 KSNKKPYKGKITE 104
++ +K + E
Sbjct: 147 QNKFIDFKDRKIE 159
>pdb|1TWL|A Chain A, Inorganic Pyrophosphatase From Pyrococcus Furiosus
Pfu-264096-001
Length = 186
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/172 (27%), Positives = 78/172 (45%), Gaps = 27/172 (15%)
Query: 165 SPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPH 224
+PFHD+ +V + ++ ++EIP+ + K E+ D K G L+ ++
Sbjct: 10 NPFHDLEPGPDVPEVVYA-IIEIPKGSRNKYEL-----------DKKTGLLKLDRVLYSP 57
Query: 225 HGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLI 284
Y +YG +P+TW D DP D++ I II+ + +G+ +I
Sbjct: 58 FFYPVDYGIIPRTWYE------------DDDPFDIMVIMREPVYPLTIIEARPIGLFKMI 105
Query: 285 DEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGK 336
D G D+K++A+ V DP D+ D+ F L +FK YK GK
Sbjct: 106 DSGDKDYKVLAVPVEDPYFKDWKDIDDVPKAF---LDEIAHFFKRYKELQGK 154
>pdb|1FNX|H Chain H, Solution Structure Of The Huc Rbd1-Rbd2 Complexed With The
Au-Rich Element
Length = 174
Score = 62.0 bits (149), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/156 (32%), Positives = 77/156 (49%), Gaps = 30/156 (19%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAI--- 90
L + LP +T++EFK FG GDI +L+++ G+ G GF+NY++ A KAI
Sbjct: 7 LIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTL 66
Query: 91 --LK--------SNKKPYKGKI--------------TEEEFKEHFGQYGDIIDAQ-LLKN 125
LK S +P I +++E ++ F QYG II ++ LL
Sbjct: 67 NGLKLQTKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQ 126
Query: 126 ADGKLKGCGFINYANKISAVKAILKSN-KKPYKGSE 160
A G +G GFI + +I A +AI N +KP +E
Sbjct: 127 ATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAAE 162
>pdb|1FXL|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The C-Fos
Rna
pdb|1G2E|A Chain A, Crystal Structure Of Hud And Au-Rich Element Of The Tumor
Necrosis Factor Alpha Rna
Length = 167
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 30/156 (19%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKS 93
L + LP +T+EEF+ FG G+I +L+++ G+ G GF+NY + A KAI
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 94 N-------------KKPYKGKI--------------TEEEFKEHFGQYGDIIDAQLL-KN 125
N +P I T++E ++ F QYG II +++L
Sbjct: 65 NGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ 124
Query: 126 ADGKLKGCGFINYANKISAVKAILKSN-KKPYKGSE 160
G +G GFI + +I A +AI N +KP +E
Sbjct: 125 VTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATE 160
>pdb|3D63|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3D63|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3D63|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei
pdb|3EIY|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound Pyrophosphate
pdb|3EIZ|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei, H32 Crystal Form
pdb|3EJ0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound
N-(Pyridin-3-Ylmethyl) Aniline, H32 Crystal Form
pdb|3EJ2|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Burkholderia Pseudomallei With Bound 5-Amino-1-(4-
Chlorophenyl)-1h-Pyrazole-4-Carbonitrile, H32 Crystal
Form
pdb|3GVF|A Chain A, 1.7 Angstrom Crystal Structure Of Inorganic
Pyrophosphatase From Burkholderia Pseudomallei Bound
With Phosphate
Length = 196
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 71/156 (45%), Gaps = 33/156 (21%)
Query: 181 FNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHG--YIWNYGALPQTW 238
FN+++EIP + P+K + K V + F G Y NYG +PQT
Sbjct: 37 FNVIIEIPAQSE------------PVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQTL 84
Query: 239 ENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINV 298
GDGDP+DVL I G +++ +ALG++ + DE D K++A+
Sbjct: 85 S------------GDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPH 132
Query: 299 ND--PNAAKLNDVADIETHFPGYLK-ATNEWFKIYK 331
+ P A L + D+ P YLK +F+ YK
Sbjct: 133 DKVCPMTANLKSIDDV----PAYLKDQIKHFFEQYK 164
>pdb|1QEZ|A Chain A, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|B Chain B, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|C Chain C, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|D Chain D, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|E Chain E, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase.
pdb|1QEZ|F Chain F, Sulfolobus Acidocaldarius Inorganic Pyrophosphatase: An
Archael Pyrophosphatase
Length = 173
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 25/135 (18%)
Query: 180 IFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWE 239
+ N++VEIP+ +N K E + E + IK + Y + +P +NYG +P T E
Sbjct: 12 VVNVLVEIPQGSNIKYEYDDEEGV------IKVDRVLYTSMNYP-----FNYGFIPGTLE 60
Query: 240 NPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAI--N 297
DGDP+DVL I G +I+V+ +G++ + DE D KI+A+ +
Sbjct: 61 E------------DGDPLDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKD 108
Query: 298 VNDPNAAKLNDVADI 312
DP+ + + D+ D+
Sbjct: 109 KTDPSFSNIKDINDL 123
>pdb|3LO0|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Ehrlichia Chaffeensis
Length = 193
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 67/147 (45%), Gaps = 17/147 (11%)
Query: 187 IPRWTNAKMEINLNEPLNPIKQDI-KKGNLRYVANVFPHHGYI-WNYGALPQTWENPDET 244
+P+ N +EI+ N P+K + K+ NL V P Y NYG +P T
Sbjct: 33 VPKEINVIIEISQNS--CPVKYEFDKEKNLFCVDRFLPTSMYYPCNYGFIPHTC------ 84
Query: 245 DAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAA 304
GDGDP+DVL G +I+ + +GV+ + DE D KI+A+ + +
Sbjct: 85 ------AGDGDPVDVLVASRFPVMSGAVIRARPVGVLVMHDESGEDVKILAVPTHKVDQY 138
Query: 305 KLNDVADIETHFPGYLKATNEWFKIYK 331
N++ D +L + + +F YK
Sbjct: 139 -YNNIKDYSDFPVSFLNSISHFFTFYK 164
>pdb|2BQX|A Chain A, Inorganic Pyrophosphatase From The Pathogenic Bacterium
Helicobacter Pylori-Kinetic And Structural Properties
pdb|2BQY|A Chain A, Inorganic Pyrophosphatase From The Pathogenic Bacterium
Helicobacter Pylori-Kinetic And Structural Properties
Length = 173
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 69/151 (45%), Gaps = 28/151 (18%)
Query: 183 MVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPD 242
+V+EI + +N K E+ D + G L ++ Y NYG +P T
Sbjct: 17 VVIEISKHSNIKYEL-----------DKESGALMVDRVLYGAQNYPANYGFVPNTL---- 61
Query: 243 ETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--D 300
DGDP+D L + + + G +++ + +GV+ + DE D K+IA+ ++ D
Sbjct: 62 --------GSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKID 113
Query: 301 PNAAKLNDVADIETHFPGYLKATNEWFKIYK 331
P + + D+ D+ H L +F+ YK
Sbjct: 114 PTHSYVKDIDDLSKH---TLDKIKHFFETYK 141
>pdb|2DHS|A Chain A, Solution Structure Of Nucleic Acid Binding Protein
Cugbp1ab And Its Binding Study With Dna And Rna
Length = 187
Score = 55.1 bits (131), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 35/171 (20%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADG---KLKGCGFINYANKISAVKA- 89
++F+ +P +E++ +E F QYG + + +L++ + KGC F+ + + +A++A
Sbjct: 17 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 76
Query: 90 -------ILKSNKKPYK-----------------------GKITEEEFKEHFGQYGDIID 119
+L P + K TE + + F +G I +
Sbjct: 77 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEE 136
Query: 120 AQLLKNADGKLKGCGFINYANKISAVKAILKSNK-KPYKGSENGLISPFHD 169
++L+ DG +GC F+ + + A AI ++ + +G + ++ F D
Sbjct: 137 CRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 187
>pdb|3NNC|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 75/171 (43%), Gaps = 35/171 (20%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADG---KLKGCGFINYANKISAVKA- 89
++F+ +P +E++ +E F QYG + + +L++ + KGC F+ + + +A++A
Sbjct: 5 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64
Query: 90 -------ILKSNKKPYK-----------------------GKITEEEFKEHFGQYGDIID 119
+L P + K TE + + F +G I +
Sbjct: 65 NALHNMKVLPGMHHPIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEE 124
Query: 120 AQLLKNADGKLKGCGFINYANKISAVKAILKSNK-KPYKGSENGLISPFHD 169
++L+ DG +GC F+ + + A AI ++ + +G + ++ F D
Sbjct: 125 CRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175
>pdb|3SDE|A Chain A, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 30/140 (21%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA-- 89
R RLF+ NLP ITEE+FK F +YG+ +++ N D +G GFI ++ A A
Sbjct: 22 RCRLFVGNLPTDITEEDFKRLFERYGE--PSEVFINRD---RGFGFIRLESRTLAEIAKA 76
Query: 90 -----ILKSNKKPYKGK----------------ITEEEFKEHFGQYGDIIDAQLLKNADG 128
ILKS +P + + ++ E ++ F Q+G + A ++ + G
Sbjct: 77 ELDGTILKS--RPLRIRFATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRG 134
Query: 129 KLKGCGFINYANKISAVKAI 148
+ G GF+ +A K A KA+
Sbjct: 135 RATGKGFVEFAAKPPARKAL 154
>pdb|1YGZ|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|D Chain D, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|E Chain E, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
pdb|1YGZ|F Chain F, Crystal Structure Of Inorganic Pyrophosphatase From
Helicobacter Pylori
Length = 173
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 28/151 (18%)
Query: 183 MVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPD 242
+V+EI + +N K E+ D + G L ++ Y NYG +P T
Sbjct: 17 VVIEISKHSNIKYEL-----------DKESGALXVDRVLYGAQNYPANYGFVPNTL---- 61
Query: 243 ETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--D 300
DGDP+D L + + + G +++ + +GV+ DE D K+IA+ ++ D
Sbjct: 62 --------GSDGDPVDALVLSDVAFQAGSVVKARLVGVLNXEDESGXDEKLIALPIDKID 113
Query: 301 PNAAKLNDVADIETHFPGYLKATNEWFKIYK 331
P + + D+ D+ H L +F+ YK
Sbjct: 114 PTHSYVKDIDDLSKH---TLDKIKHFFETYK 141
>pdb|3NMR|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
pdb|3NNA|A Chain A, Crystal Structure Of Cugbp1 Rrm12-Rna Complex
Length = 175
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/171 (20%), Positives = 73/171 (42%), Gaps = 35/171 (20%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADG---KLKGCGFINYANKISAVKA- 89
+ F+ +P +E++ +E F QYG + + +L++ + KGC F+ + + +A++A
Sbjct: 5 KXFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQ 64
Query: 90 -------ILKSNKKPYKGK-----------------------ITEEEFKEHFGQYGDIID 119
+L P + K TE + + F +G I +
Sbjct: 65 NALHNXKVLPGXHHPIQXKPADSEKNNAVEDRKLFIGXISKKCTENDIRVXFSSFGQIEE 124
Query: 120 AQLLKNADGKLKGCGFINYANKISAVKAILKSNK-KPYKGSENGLISPFHD 169
++L+ DG +GC F+ + + A AI ++ + +G + + F D
Sbjct: 125 CRILRGPDGLSRGCAFVTFTTRAXAQTAIKAXHQAQTXEGCSSPXVVKFAD 175
>pdb|3SDE|B Chain B, Crystal Structure Of A Paraspeckle-Protein Heterodimer,
Pspc1NONO
Length = 261
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 26/138 (18%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 91
R RLF+ NLP ITEEE ++ F +YG + + K+ KG GFI + A A +
Sbjct: 22 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKV 76
Query: 92 KSNKKPYKGK---------------------ITEEEFKEHFGQYGDIIDAQLLKNADGKL 130
+ + P +GK ++ E +E F +G + A ++ + G+
Sbjct: 77 ELDNMPLRGKQLRVRFACHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRP 136
Query: 131 KGCGFINYANKISAVKAI 148
G G + ++ K +A KA+
Sbjct: 137 SGKGIVEFSGKPAARKAL 154
>pdb|1PGZ|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(6-Mi)
G); A Human Telomeric Repeat Containing 6-Methyl-8-(2-
Deoxy-Beta-Ribofuranosyl)isoxanthopteridine (6-Mi)
Length = 195
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 40/154 (25%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 14 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 71
Query: 93 SNKKPYK--GKITE----------------------------EEFKEH-----FGQYGDI 117
N +P+K G++ E E+ +EH F QYG I
Sbjct: 72 -NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 130
Query: 118 IDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 150
+++ + GK +G F+ + + S K +++
Sbjct: 131 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 164
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSNKKPYK 157
+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A + N +P+K
Sbjct: 23 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM--NARPHK 77
>pdb|1L3K|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
pdb|1U1K|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt 7da
Ggg); A Human Telomeric Repeat Containing
7-Deaza-Adenine
pdb|1U1L|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtt Prn
Ggg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1M|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 7gu
Gg); A Human Telomeric Repeat Containing 7-Deaza-Guanine
pdb|1U1N|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta (Prn)
Gg); A Human Telomeric Repeat Containing Nebularine
pdb|1U1O|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggttag(Di)g); A Human Telomeric Repeat Containing
Inosine
pdb|1U1P|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggtta 2pr
Gg); A Human Telomeric Repeat Containing 2-Aminopurine
pdb|1U1Q|A Chain A, Crystal Structure Of Up1 Complexed With
D(Ttagggtta(Di)gg); A Human Telomeric Repeat Containing
Inosine
pdb|1U1R|A Chain A, Crystal Structure Of Up1 Complexed With D(Ttagggttag(2pr)
G); A Human Telomeric Repeat Containing 2-Aminopurine
Length = 196
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 40/154 (25%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE----------------------------EEFKEH-----FGQYGDI 117
N +P+K G++ E E+ +EH F QYG I
Sbjct: 73 -NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 118 IDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 150
+++ + GK +G F+ + + S K +++
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 35.8 bits (81), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSNKKPYK 157
+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A + N +P+K
Sbjct: 24 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM--NARPHK 78
>pdb|2DO4|A Chain A, Solution Structure Of The Rna Binding Domain Of Squamous
Cell Carcinoma Antigen Recognized By T Cells 3
Length = 100
Score = 50.1 bits (118), Expect = 3e-06, Method: Composition-based stats.
Identities = 25/73 (34%), Positives = 41/73 (56%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 91
+ +LFI LPF T+EE +E +G + D +L+ N GK KG ++ Y N+ A +A++
Sbjct: 17 KHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVM 76
Query: 92 KSNKKPYKGKITE 104
K + K I +
Sbjct: 77 KMDGMTIKENIIK 89
Score = 37.0 bits (84), Expect = 0.024, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 150
T+EE +E +G + D +L+ N GK KG ++ Y N+ A +A++K
Sbjct: 30 TKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMK 77
>pdb|2LYV|A Chain A, Solution Structure Of The Two Rrm Domains Of Hnrnp A1
(up1) Using Segmental Isotope Labeling
Length = 197
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 40/154 (25%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 16 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 73
Query: 93 SNKKPYK--GKITE----------------------------EEFKEH-----FGQYGDI 117
N +P+K G++ E E+ +EH F QYG I
Sbjct: 74 -NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 132
Query: 118 IDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 150
+++ + GK +G F+ + + S K +++
Sbjct: 133 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 166
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSNKKPYK 157
+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A + N +P+K
Sbjct: 25 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM--NARPHK 79
>pdb|1HA1|A Chain A, Hnrnp A1 (Rbd1,2) From Homo Sapiens
Length = 184
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 40/154 (25%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE----------------------------EEFKEH-----FGQYGDI 117
N +P+K G++ E E+ +EH F QYG I
Sbjct: 73 -NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 131
Query: 118 IDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 150
+++ + GK +G F+ + + S K +++
Sbjct: 132 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 165
Score = 35.8 bits (81), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSNKKPYK 157
+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A + N +P+K
Sbjct: 24 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM--NARPHK 78
>pdb|2UP1|A Chain A, Structure Of Up1-Telomeric Dna Complex
pdb|1PO6|A Chain A, Crystal Structure Of Up1 Complexed With
D(Tagg(6mi)ttaggg): A Human Telomeric Repeat Containing
6-Methyl-8-(2-Deoxy-
Beta-Ribofuranosyl)isoxanthopteridine (6mi)
Length = 183
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 40/154 (25%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 65
Query: 93 SNKKPYK--GKITE----------------------------EEFKEH-----FGQYGDI 117
N +P+K G++ E E+ +EH F QYG I
Sbjct: 66 -NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 124
Query: 118 IDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 150
+++ + GK +G F+ + + S K +++
Sbjct: 125 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 158
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSNKKPYK 157
+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A + N +P+K
Sbjct: 17 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM--NARPHK 71
>pdb|1UP1|A Chain A, Up1, The Two Rna-Recognition Motif Domain Of Hnrnp A1
Length = 182
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 71/154 (46%), Gaps = 40/154 (25%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 13 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 70
Query: 93 SNKKPYK--GKITE----------------------------EEFKEH-----FGQYGDI 117
N +P+K G++ E E+ +EH F QYG I
Sbjct: 71 -NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKI 129
Query: 118 IDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 150
+++ + GK +G F+ + + S K +++
Sbjct: 130 EVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 163
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 34/58 (58%), Gaps = 4/58 (6%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSNKKPYK 157
+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A + N +P+K
Sbjct: 22 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM--NARPHK 76
>pdb|3D53|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3D53|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii
pdb|3EMJ|A Chain A, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|B Chain B, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|C Chain C, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|D Chain D, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|E Chain E, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|F Chain F, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|G Chain G, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|H Chain H, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|I Chain I, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|J Chain J, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|K Chain K, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
pdb|3EMJ|L Chain L, 2.2 A Crystal Structure Of Inorganic Pyrophosphatase From
Rickettsia Prowazekii (P21 Form)
Length = 173
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 192 NAKMEINLNEPLNPIKQDIKKGNLRYVANVFPH--HGYIWNYGALPQTWENPDETDAHTG 249
N +EI +N PIK + K + + F Y NYG +P T N
Sbjct: 17 NVIIEIPMNS--GPIKYEFDKESGALFVDRFMQTTMSYPCNYGFIPDTLSN--------- 65
Query: 250 QKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAI 296
DGDP+DVL + G +I+ +A+GV+ + DE D KIIA+
Sbjct: 66 ---DGDPVDVLVVAHHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAV 109
>pdb|2CQ3|A Chain A, Solution Structure Of Rna Binding Domain In Rna Binding
Motif Protein 9
Length = 103
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
RL + N+PF+ + + ++ FGQ+G I+D +++ N G KG GF+ + N A +A K
Sbjct: 17 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-KGFGFVTFENSADADRAREKL 75
Query: 94 NKKPYKGKITE 104
+ +G+ E
Sbjct: 76 HGTVVEGRKIE 86
Score = 35.0 bits (79), Expect = 0.086, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 147
+ + + ++ FGQ+G I+D +++ N G KG GF+ + N A +A
Sbjct: 26 RFRDPDLRQMFGQFGKILDVEIIFNERGS-KGFGFVTFENSADADRA 71
>pdb|2ERR|A Chain A, Nmr Structure Of The Rna Binding Domain Of Human Fox-1 In
Complex With Ugcaugu
Length = 109
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
RL + N+PF+ + + ++ FGQ+G I+D +++ N G KG GF+ + N A +A K
Sbjct: 31 RLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-KGFGFVTFENSADADRAREKL 89
Query: 94 NKKPYKGKITE 104
+ +G+ E
Sbjct: 90 HGTVVEGRKIE 100
Score = 35.0 bits (79), Expect = 0.092, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 147
+ + + ++ FGQ+G I+D +++ N G KG GF+ + N A +A
Sbjct: 40 RFRDPDLRQMFGQFGKILDVEIIFNERGS-KGFGFVTFENSADADRA 85
>pdb|3LD3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Anaplasma
Phagocytophilum At 1.75a Resolution
pdb|3LD3|B Chain B, Crystal Structure Of Inorganic Phosphatase From Anaplasma
Phagocytophilum At 1.75a Resolution
Length = 199
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 23/154 (14%)
Query: 186 EIPRWTNAKMEINL----NEPLNPIKQDI-KKGNLRYVANVFPHHGYI-WNYGALPQTWE 239
+I +NA E+N+ ++ +P+K + +K +V P Y NYG +P T
Sbjct: 26 DIGSGSNAPEEVNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYYPCNYGFIPNTI- 84
Query: 240 NPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN 299
GDGDP+DVL + G +I V+ +GV+ + DE D K++A+
Sbjct: 85 -----------AGDGDPVDVLVLARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPAT 133
Query: 300 --DPNAAKLNDVADIETHFPGYLKATNEWFKIYK 331
D + + +D+ + F L + + +F YK
Sbjct: 134 KVDQYYGNIVNYSDLPSSF---LDSISHFFSFYK 164
>pdb|4EGL|A Chain A, Crystal Structure Of Two Tandem Rna Recognition Motifs Of
Human Antigen R
Length = 177
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 30/159 (18%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAI 90
R L + LP +T++E + F G++ A+L+++ G G GF+NY A +AI
Sbjct: 2 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 61
Query: 91 -----LKSNKKPYK----------------------GKITEEEFKEHFGQYGDIIDAQ-L 122
L+ K K +T+++ ++ F ++G II+++ L
Sbjct: 62 NTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 121
Query: 123 LKNADGKLKGCGFINYANKISAVKAILKSN-KKPYKGSE 160
+ G +G FI + + A +AI N KP SE
Sbjct: 122 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSE 160
>pdb|4ED5|A Chain A, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
pdb|4ED5|B Chain B, Crystal Structure Of The Two N-Terminal Rrm Domains Of Hur
Complexed With Rna
Length = 177
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 30/159 (18%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAI 90
R L + LP +T++E + F G++ A+L+++ G G GF+NY A +AI
Sbjct: 2 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 61
Query: 91 -----LKSNKKPYK----------------------GKITEEEFKEHFGQYGDIIDAQ-L 122
L+ K K +T+++ ++ F ++G II+++ L
Sbjct: 62 NTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVL 121
Query: 123 LKNADGKLKGCGFINYANKISAVKAILKSN-KKPYKGSE 160
+ G +G FI + + A +AI N KP SE
Sbjct: 122 VDQTTGLSRGVAFIRFDKRSEAEEAITSFNGHKPPGSSE 160
>pdb|1P1T|A Chain A, Nmr Structure Of The N-Terminal Rrm Domain Of Cleavage
Stimulation Factor 64 Kda Subunit
Length = 104
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKS 93
+F+ N+P++ TEE+ K+ F + G ++ +L+ + + GK KG GF Y ++ +A+ A+
Sbjct: 11 VFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNL 70
Query: 94 NKKPYKGK 101
N + + G+
Sbjct: 71 NGREFSGR 78
>pdb|2DH7|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Nucleolysin Tiar
Length = 105
Score = 45.4 bits (106), Expect = 6e-05, Method: Composition-based stats.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 91
+F+ +L +IT E+ K F +G I DA+++K+ A GK KG GF+++ NK+ A AI+
Sbjct: 18 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 75
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/50 (44%), Positives = 34/50 (68%), Gaps = 1/50 (2%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
+IT E+ K F +G I DA+++K+ A GK KG GF+++ NK+ A AI+
Sbjct: 26 EITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 75
>pdb|2UXS|A Chain A, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
pdb|2UXS|B Chain B, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
pdb|2UXS|C Chain C, 2.7a Crystal Structure Of Inorganic Pyrophosphatase
(rv3628) From Mycobacterium Tuberculosis At Ph 7.5
Length = 169
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 28/152 (18%)
Query: 181 FNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWEN 240
F++ +EIP+ K E+ D + G +R ++ Y +YG + T +
Sbjct: 10 FDVTIEIPKGQRNKYEV-----------DHETGRVRLDRYLYTPMAYPTDYGFIEDTLGD 58
Query: 241 PDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVND 300
DGDP+D L + + G ++ + +G+ ++DE D K++ + D
Sbjct: 59 ------------DGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGD 106
Query: 301 PNAAKLNDVADIETHFPGY-LKATNEWFKIYK 331
P + D+ D+ P + L A +F YK
Sbjct: 107 PRWDHVQDIGDV----PAFELDAIKHFFVHYK 134
>pdb|1SXV|A Chain A, 1.3a Crystal Structure Of Rv3628, Mycobacterium
Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph5.0
Length = 172
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 28/152 (18%)
Query: 181 FNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWEN 240
F++ +EIP+ K E+ D + G +R ++ Y +YG + T +
Sbjct: 13 FDVTIEIPKGQRNKYEV-----------DHETGRVRLDRYLYTPMAYPTDYGFIEDTLGD 61
Query: 241 PDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVND 300
DGDP+D L + + G ++ + +G+ ++DE D K++ + D
Sbjct: 62 ------------DGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGD 109
Query: 301 PNAAKLNDVADIETHFPGY-LKATNEWFKIYK 331
P + D+ D+ P + L A +F YK
Sbjct: 110 PRWDHVQDIGDV----PAFELDAIKHFFVHYK 137
>pdb|1WCF|A Chain A, 1.54 A Crystal Structure Of Rv3628, Mycobacterium
Tuberculosis Inorganic Pyrophosphatase (Ppase) At Ph7.0
Length = 171
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/152 (23%), Positives = 65/152 (42%), Gaps = 28/152 (18%)
Query: 181 FNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWEN 240
F++ +EIP+ K E+ D + G +R ++ Y +YG + T +
Sbjct: 12 FDVTIEIPKGQRNKYEV-----------DHETGRVRLDRYLYTPMAYPTDYGFIEDTLGD 60
Query: 241 PDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVND 300
DGDP+D L + + G ++ + +G+ ++DE D K++ + D
Sbjct: 61 ------------DGDPLDALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGD 108
Query: 301 PNAAKLNDVADIETHFPGY-LKATNEWFKIYK 331
P + D+ D+ P + L A +F YK
Sbjct: 109 PRWDHVQDIGDV----PAFELDAIKHFFVHYK 136
>pdb|2DO0|A Chain A, Solution Structure Of The Rna Binding Domain Of
Heterogeneous Nuclear Ribonucleoprotein M
Length = 114
Score = 45.1 bits (105), Expect = 8e-05, Method: Composition-based stats.
Identities = 20/56 (35%), Positives = 35/56 (62%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+F+ NL +K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI
Sbjct: 18 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 73
Score = 37.0 bits (84), Expect = 0.022, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 148
K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI
Sbjct: 26 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAI 73
>pdb|2CPJ|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
pdb|2RS8|A Chain A, Solution Structure Of The N-Terminal Rna Recognition Motif
Of Nono
Length = 99
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 28/79 (35%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 91
R RLF+ NLP ITEEE ++ F +YG + + K+ KG GFI + A A +
Sbjct: 15 RSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKV 69
Query: 92 KSNKKPYKGKITEEEFKEH 110
+ + P +GK F H
Sbjct: 70 ELDNMPLRGKQLRVRFACH 88
Score = 28.5 bits (62), Expect = 8.9, Method: Composition-based stats.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 5/59 (8%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
ITEEE ++ F +YG + + K+ KG GFI + A A ++ + P +G +
Sbjct: 27 ITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRGKQ 80
>pdb|4ECP|A Chain A, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
pdb|4ECP|B Chain B, X-Ray Crystal Structure Of Inorganic Pyrophosphate Ppa
From Mycobacterium Leprae
Length = 167
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 26/151 (17%)
Query: 181 FNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWEN 240
F++ +EIP+ K E+ D K G +R ++ Y +YG + T
Sbjct: 8 FDVTIEIPKGQRNKYEV-----------DHKTGRVRLDRYLYTPMAYPTDYGFIEDTLGE 56
Query: 241 PDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVND 300
DGDP+D L + G +++ + +G+ ++DE D K++ + VND
Sbjct: 57 ------------DGDPLDALVLLPEPLFPGVLVEARPVGMFRMVDEHGGDDKVLCVPVND 104
Query: 301 PNAAKLNDVADIETHFPGYLKATNEWFKIYK 331
++ + D+ T L A +F YK
Sbjct: 105 HRWDHIHGIIDVPTF---ELDAIKHFFVHYK 132
>pdb|3SW5|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|B Chain B, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|C Chain C, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|D Chain D, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|E Chain E, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
pdb|3SW5|F Chain F, Crystal Structure Of Inorganic Pyrophosphatase From
Bartonella Henselae
Length = 180
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 63/146 (43%), Gaps = 17/146 (11%)
Query: 188 PRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIW--NYGALPQTWENPDETD 245
P N +E++L PIK ++ K + + F + ++ NYG +P T
Sbjct: 17 PEDVNVIVEVSLGG--QPIKYEMDKKSGALFVDRFLYTSMVYPGNYGFVPHTLSE----- 69
Query: 246 AHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAK 305
DGDPIDVL R G +I V +G + + D+G D KIIAI +
Sbjct: 70 -------DGDPIDVLICNTRPLLPGCVINVYPIGALIMEDDGGKDEKIIAIPTPK-LTQR 121
Query: 306 LNDVADIETHFPGYLKATNEWFKIYK 331
N++ D LK +F+ YK
Sbjct: 122 YNNIHDYTDLPEITLKQIEHFFEHYK 147
>pdb|1SXL|A Chain A, Resonance Assignments And Solution Structure Of The Second
Rna-Binding Domain Of Sex-Lethal Determined By
Multidimensional Heteronuclear Magnetic Resonance
Spectroscopy
Length = 97
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKS 93
L++ NLP IT+++ FG+YG I+ +L++ G+ +G F+ Y + A +AI
Sbjct: 16 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 75
Query: 94 N-------KKPYKGKITEEEFK 108
N +P ++ EE K
Sbjct: 76 NNVIPEGGSQPLSVRLAEEHGK 97
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAI 148
IT+++ FG+YG I+ +L++ G+ +G F+ Y + A +AI
Sbjct: 25 ITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 72
>pdb|1D9A|A Chain A, Solution Structure Of The Second Rna-Binding Domain
(Rbd2) Of Hu Antigen C (Huc)
Length = 85
Score = 43.5 bits (101), Expect = 2e-04, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQ-LLKNADGKLKGCGFINYANKISAVKAILKS 93
L++ LP ++++E ++ F QYG II ++ LL A G +G GFI + +I A +AI
Sbjct: 4 LYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGL 63
Query: 94 N-KKP 97
N +KP
Sbjct: 64 NGQKP 68
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 102 ITEEEFKEHFGQYGDIIDAQ-LLKNADGKLKGCGFINYANKISAVKAILKSN-KKPYKGS 159
++++E ++ F QYG II ++ LL A G +G GFI + +I A +AI N +KP +
Sbjct: 13 MSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQKPLGAA 72
Query: 160 E 160
E
Sbjct: 73 E 73
>pdb|3SXL|A Chain A, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|B Chain B, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
pdb|3SXL|C Chain C, Sex-Lethal Rna Recognition Domains 1 And 2 From Drosophila
Melanogaster
Length = 184
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKS 93
L++ NLP IT+++ FG+YG I+ +L++ G+ +G F+ Y + A +AI
Sbjct: 103 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 162
Query: 94 N-------KKPYKGKITEEEFK 108
N +P ++ EE K
Sbjct: 163 NNVIPEGGSQPLSVRLAEEHGK 184
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 57/143 (39%), Gaps = 29/143 (20%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKS 93
L + LP T+ E F G I ++ ++ G G F+++ ++ + +AI
Sbjct: 17 LIVNYLPQDXTDRELYALFRAIGPINTCRIXRDYKTGYSFGYAFVDFTSEXDSQRAIKVL 76
Query: 94 NKKPYKGK---------------------------ITEEEFKEHFGQYGDIIDAQLLKNA 126
N + K IT+++ FG+YG I+ +L++
Sbjct: 77 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK 136
Query: 127 -DGKLKGCGFINYANKISAVKAI 148
G+ +G F+ Y + A +AI
Sbjct: 137 LTGRPRGVAFVRYNKREEAQEAI 159
>pdb|1B7F|A Chain A, Sxl-Lethal ProteinRNA COMPLEX
pdb|1B7F|B Chain B, Sxl-Lethal ProteinRNA COMPLEX
Length = 168
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAI 90
L++ NLP IT+++ FG+YG I+ +L++ G+ +G F+ Y + A +AI
Sbjct: 92 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 148
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/143 (20%), Positives = 60/143 (41%), Gaps = 29/143 (20%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKS 93
L + LP +T+ E F G I +++++ G G F+++ +++ + +AI
Sbjct: 6 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 65
Query: 94 NKKPYKGK---------------------------ITEEEFKEHFGQYGDIIDAQLLKNA 126
N + K IT+++ FG+YG I+ +L++
Sbjct: 66 NGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK 125
Query: 127 -DGKLKGCGFINYANKISAVKAI 148
G+ +G F+ Y + A +AI
Sbjct: 126 LTGRPRGVAFVRYNKREEAQEAI 148
>pdb|1D8Z|A Chain A, Solution Structure Of The First Rna-Binding Domain
(Rbd1) Of Hu Antigen C (Huc)
Length = 89
Score = 42.4 bits (98), Expect = 5e-04, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAI 90
+ L + LP +T++EFK FG GDI +L+++ G+ G GF+NY++ A KAI
Sbjct: 4 KTNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 63
Score = 37.7 bits (86), Expect = 0.013, Method: Composition-based stats.
Identities = 20/48 (41%), Positives = 31/48 (64%), Gaps = 1/48 (2%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAI 148
+T++EFK FG GDI +L+++ G+ G GF+NY++ A KAI
Sbjct: 16 MTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAI 63
>pdb|2E5H|A Chain A, Solution Structure Of Rna Binding Domain In Zinc Finger
Cchc-Type And Rna Binding Motif 1
Length = 94
Score = 42.4 bits (98), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADG-KLKGCGFINYANKISAVKAI 90
+ +++ NLPF +T + F +YG ++ ++K+ D K KG FI + +K SA
Sbjct: 16 KSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCT 75
Query: 91 LKSNKKPYKGKITE 104
N K G++ +
Sbjct: 76 RAINNKQLFGRVIK 89
>pdb|2DGP|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
In Bruno-Like 4 Rna-Binding Protein
Length = 106
Score = 42.0 bits (97), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LFI +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 15 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 71
>pdb|2DNQ|A Chain A, Solution Structure Of Rna Binding Domain 1 In
Rna-Binding Protein 30
Length = 90
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 34/57 (59%), Gaps = 7/57 (12%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+LFI NLP + TE+E + F QYG +++ ++KN GF++ +K +A AI
Sbjct: 10 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIKNY-------GFVHIEDKTAAEDAI 59
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 148
TE+E + F QYG +++ ++KN GF++ +K +A AI
Sbjct: 21 TEQEIRSLFEQYGKVLECDIIKNY-------GFVHIEDKTAAEDAI 59
>pdb|3FQ3|A Chain A, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|B Chain B, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|C Chain C, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|D Chain D, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|E Chain E, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|F Chain F, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|G Chain G, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|H Chain H, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|I Chain I, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|J Chain J, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|K Chain K, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
pdb|3FQ3|L Chain L, Crystal Structure Of Inorganic Phosphatase From Brucella
Melitensis
Length = 197
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 55/131 (41%), Gaps = 17/131 (12%)
Query: 204 NPIK--QDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLE 261
PIK D K G L ++ Y NYG +P T DGDPIDVL
Sbjct: 48 QPIKYEMDKKAGALIVDRFLYTPMTYPGNYGFVPHTLSE------------DGDPIDVLV 95
Query: 262 IGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGY-L 320
R G +I V+ +GV+ + D D KIIA V P+ + + T P L
Sbjct: 96 CNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIA--VPSPHLTRRYEKIHDYTDMPEITL 153
Query: 321 KATNEWFKIYK 331
K +F+ YK
Sbjct: 154 KQIAHFFEHYK 164
>pdb|1X4B|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous Nuclear
Ribonucleaoproteins A2B1
Length = 116
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 92
+LFI L F+ TEE + ++ Q+G + D ++++ A + +G GF+ +++ ++ V A +
Sbjct: 29 KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSS-MAEVDAAMA 87
Query: 93 SNKKPYKGKITE 104
+ G++ E
Sbjct: 88 ARPHSIDGRVVE 99
>pdb|2DGV|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 92
Score = 41.2 bits (95), Expect = 0.001, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
++F++NLPF T + K+ F + G ++ A +K +GK KGCG + + + A +A
Sbjct: 10 QIFVRNLPFDFTWKMLKDKFNECGHVLYAD-IKMENGKSKGCGVVKFESPEVAERACRMM 68
Query: 94 NKKPYKGK 101
N G+
Sbjct: 69 NGMKLSGR 76
>pdb|2DNK|A Chain A, Solution Structure Of Rna Binding Domain In Bruno-Like 4
Rna Binding Protein
Length = 105
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+LF+ L + +E++ + F +G+I + +L+ DG KGC F+ Y++ A AI
Sbjct: 17 KLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAI 73
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 93 SNKKPYKGKI----TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINY---ANKISAV 145
S++K + G + +E++ + F +G+I + +L+ DG KGC F+ Y A +A+
Sbjct: 14 SHRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAI 73
Query: 146 KAILKSNKKPYKGSENGLISPFHD 169
A+ S P G+ + L+ F D
Sbjct: 74 NALHGSQTMP--GASSSLVVKFAD 95
>pdb|2CQG|A Chain A, Solution Structure Of The Rna Binding Domain Of Tar Dna-
Binding Protein-43
Length = 103
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAI 90
L + LP+K TE++ KE+F +G+++ Q+ K+ G KG GF+ + + VK +
Sbjct: 18 LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 74
Score = 34.7 bits (78), Expect = 0.12, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAI 148
K TE++ KE+F +G+++ Q+ K+ G KG GF+ + + VK +
Sbjct: 26 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVM 74
>pdb|2DH8|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain In
Daz-Associated Protein 1
Length = 105
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 91
G+LF+ L + T+E + +F QYG+++D ++K+ + +G GF+ + + + V +L
Sbjct: 17 GKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVL 75
Query: 92 KSNKKPYKGK 101
S G+
Sbjct: 76 ASRPHTLDGR 85
Score = 31.6 bits (70), Expect = 0.92, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
T+E + +F QYG+++D ++K+ + +G GF+ + + + V +L S G
Sbjct: 29 TQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDP-NCVGTVLASRPHTLDG 84
>pdb|2JRS|A Chain A, Solution Nmr Structure Of Caper Rrm2 Domain. Northeast
Structural Genomics Target Hr4730a
Length = 108
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 27/78 (34%), Positives = 45/78 (57%), Gaps = 7/78 (8%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILK 92
RL++ +L F ITE+ + F +G I QL+ +++ G+ KG GFI +++ A KA+ +
Sbjct: 28 RLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQ 87
Query: 93 SN-----KKPYK-GKITE 104
N +P K G +TE
Sbjct: 88 LNGFELAGRPMKVGHVTE 105
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSN 152
ITE+ + F +G I QL+ +++ G+ KG GFI +++ A KA+ + N
Sbjct: 38 ITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLN 89
>pdb|3TR4|A Chain A, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|B Chain B, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|C Chain C, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|D Chain D, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|E Chain E, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
pdb|3TR4|F Chain F, Structure Of An Inorganic Pyrophosphatase (Ppa) From
Coxiella Burnetii
Length = 178
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 49/107 (45%), Gaps = 17/107 (15%)
Query: 227 YIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDE 286
Y NYG +P T DGDP+DVL + + G + +V+ALG+ DE
Sbjct: 53 YPCNYGFVPSTLAQ------------DGDPLDVLVLTPVPVQPGVLXRVRALGIXKXEDE 100
Query: 287 GQTDWKIIAINVNDPNAA--KLNDVADIETHFPGYLKATNEWFKIYK 331
D K++A+ V A + + DI + L A + +F+ YK
Sbjct: 101 AGEDSKVLAVPVVKACRAYEAIQSLKDISSLL---LDAISHFFERYK 144
>pdb|2DH9|A Chain A, Solution Structure Of The C-Terminal Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein M
Length = 89
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F++NLPF T + K+ F + G ++ A +K +GK KGCG + + + A +A N
Sbjct: 8 IFVRNLPFDFTWKMLKDKFNECGHVLYAD-IKMENGKSKGCGVVKFESPEVAERACRMMN 66
Query: 95 KKPYKGK 101
G+
Sbjct: 67 GMKLSGR 73
>pdb|2DGQ|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
In Bruno-Like 6 Rna-Binding Protein
Length = 108
Score = 40.0 bits (92), Expect = 0.002, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 17 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKA 73
>pdb|1X5S|A Chain A, Solution Structure Of Rrm Domain In A18 Hnrnp
Length = 102
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADG-KLKGCGFINYANKISAVKAIL 91
G+LF+ L F E+ ++ F +YG I + ++K+ + + +G GF+ + N A A++
Sbjct: 13 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 72
Query: 92 KSNKKPYKGK 101
N K G+
Sbjct: 73 AMNGKSVDGR 82
>pdb|1MJW|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D42n
pdb|1MJW|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D42n
Length = 175
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 59/130 (45%), Gaps = 27/130 (20%)
Query: 169 DIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHG-- 226
++P ++ + I+ +V+EIP NA +PIK +I K + N F
Sbjct: 4 NVPAGKDLPEDIY-VVIEIP--ANA----------DPIKYEIDKESGALFVNRFMSTAMF 50
Query: 227 YIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDE 286
Y NYG + T DGDP+DVL + G +I+ + +GV+ + DE
Sbjct: 51 YPCNYGYINHTL------------SLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDE 98
Query: 287 GQTDWKIIAI 296
D K++A+
Sbjct: 99 AGEDAKLVAV 108
>pdb|2FY1|A Chain A, A Dual Mode Of Rna Recognition By The Rbmy Protein
Length = 116
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 36/74 (48%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G+LFI L + E+ K FG++G I + L+K+ K +G FI + N A A
Sbjct: 8 GKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKD 67
Query: 93 SNKKPYKGKITEEE 106
N K GK + E
Sbjct: 68 MNGKSLHGKAIKVE 81
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
E+ K FG++G I + L+K+ K +G FI + N A A N K G
Sbjct: 21 EKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG 75
>pdb|2CQD|A Chain A, Solution Structure Of The Rna Recognition Motif In Rna-
Binding Region Containing Protein 1
Length = 116
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILK 92
++F+ LP+ T+ +++F +GDI +A ++ + GK +G GF+ A++ +A +A
Sbjct: 19 KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKD 78
Query: 93 SN 94
N
Sbjct: 79 PN 80
>pdb|2PRD|A Chain A, Crystal Structure Of Inorganic Pyrophosphatase From
Thermus Thermophilus
Length = 174
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 69/159 (43%), Gaps = 28/159 (17%)
Query: 179 KIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP-HHGYIWNYGALPQT 237
++ +MV+E+PR + K E + + L IK D V P Y +YG +P T
Sbjct: 14 EVVHMVIEVPRGSGNKYEYDPD--LGAIKLD----------RVLPGAQFYPGDYGFIPST 61
Query: 238 WENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAIN 297
DGDP+D L + G +++V+ +G++ + DE D K+I +
Sbjct: 62 LAE------------DGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVV 109
Query: 298 VNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGK 336
D + D+ D+ G + +F+ YK + K
Sbjct: 110 AEDQRLDHIQDIGDVPE---GVKQEIQHFFETYKALEAK 145
>pdb|2DNO|A Chain A, Solution Structure Of Rna Binding Domain In
Trinucleotide Repeat Containing 4 Variant
Length = 102
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+LF+ L + T+E+ ++ F +G I + +L+ DG KGC F+ + A AI
Sbjct: 14 KLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAI 70
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI--LKSNKKPYKGSE 160
T+E+ ++ F +G I + +L+ DG KGC F+ + A AI L S++ G+
Sbjct: 25 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRT-LPGAS 83
Query: 161 NGLISPFHD 169
+ L+ F D
Sbjct: 84 SSLVVKFAD 92
>pdb|2DNZ|A Chain A, Solution Structure Of The Second Rna Binding Domain Of Rna
Binding Motif Protein 23
Length = 95
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKS 93
L++ +L F ITE+ + F +G I + L+K++D G+ KG GFI +++ A +A+ +
Sbjct: 8 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 67
Query: 94 NKKPYKGK 101
N G+
Sbjct: 68 NGFELAGR 75
>pdb|3LQV|A Chain A, Branch Recognition By Sf3b14
pdb|3LQV|B Chain B, Branch Recognition By Sf3b14
Length = 115
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
L+I+NLP+KIT EE + FG+YG I Q+ + +G ++ Y + A A+
Sbjct: 11 LYIRNLPYKITAEEMYDIFGKYGPI--RQIRVGNTPETRGTAYVVYEDIFDAKNAV 64
>pdb|2CPH|A Chain A, Solution Structure Of The C-Terminal Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 107
Score = 38.9 bits (89), Expect = 0.006, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLK--NADGKLKGCGFINYANKISAVKA 89
++ ++N+PF+ + E +E F +G++ +L K G +G GF+++ K A KA
Sbjct: 17 KILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKA 74
>pdb|1UAW|A Chain A, Solution Structure Of The N-Terminal Rna-Binding Domain
Of Mouse Musashi1
Length = 77
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
++FI L ++ T+E +E+FGQ+G++ + ++++ K +G GF+ + ++ K + +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 61
Query: 93 S 93
S
Sbjct: 62 S 62
Score = 32.0 bits (71), Expect = 0.81, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKS 151
+ T+E +E+FGQ+G++ + ++++ K +G GF+ + ++ K + +S
Sbjct: 11 QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 62
>pdb|2RS2|A Chain A, 1h, 13c, And 15n Chemical Shift Assignments For Musashi1
Rbd1:r(Guagu) Complex
Length = 109
Score = 38.5 bits (88), Expect = 0.007, Method: Composition-based stats.
Identities = 16/61 (26%), Positives = 38/61 (62%), Gaps = 1/61 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
++FI L ++ T+E +E+FGQ+G++ + ++++ K +G GF+ + ++ K + +
Sbjct: 27 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQ 86
Query: 93 S 93
S
Sbjct: 87 S 87
Score = 32.0 bits (71), Expect = 0.81, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKS 151
+ T+E +E+FGQ+G++ + ++++ K +G GF+ + ++ K + +S
Sbjct: 36 QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS 87
>pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 38.5 bits (88), Expect = 0.008, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
L++KNL I +E ++ F +G I A+++ G+ KG GF+ +++ A KA+ + N
Sbjct: 18 LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMN 76
Query: 95 KK 96
+
Sbjct: 77 GR 78
Score = 31.6 bits (70), Expect = 0.99, Method: Composition-based stats.
Identities = 15/53 (28%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 154
I +E ++ F +G I A+++ G+ KG GF+ +++ A KA+ + N +
Sbjct: 27 IDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMNGR 78
>pdb|4F02|A Chain A, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
pdb|4F02|D Chain D, Crystal Structure Of The Pabp-Binding Site Of Eif4g In
Complex With Rrm1-2 Of Pabp And Poly(A)
Length = 213
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 104 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 162
Query: 93 SN 94
N
Sbjct: 163 MN 164
>pdb|1NO8|A Chain A, Solution Structure Of The Nuclear Factor Aly Rbd Domain
Length = 106
Score = 38.1 bits (87), Expect = 0.009, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 37/68 (54%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
+L + NL F +++ + +E F ++G + A + + G+ G +++ K A+KA+ +
Sbjct: 30 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 89
Query: 94 NKKPYKGK 101
N P G+
Sbjct: 90 NGVPLDGR 97
>pdb|1X5O|A Chain A, Solution Structure Of Rrm Domain In Rna Binding Motif,
Single-Stranded Interacting Protein 1
Length = 114
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 14/43 (32%), Positives = 26/43 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGF 77
L+I NLP + E+E + +G +I ++L+++ G +G GF
Sbjct: 28 LYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGF 70
>pdb|2KRR|A Chain A, Solution Structure Of The Rbd1,2 Domains From Human
Nucleoli
Length = 180
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
L KNLP+K+T++E KE F +I L + DGK KG +I + + A K
Sbjct: 96 LLAKNLPYKVTQDELKEVFEDAAEI----RLVSKDGKSKGIAYIEFKTEADAEKTF 147
>pdb|1CVJ|A Chain A, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|B Chain B, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|C Chain C, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|D Chain D, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|E Chain E, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|F Chain F, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|G Chain G, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
pdb|1CVJ|H Chain H, X-Ray Crystal Structure Of The Poly(A)-Binding Protein In
Complex With Polyadenylate Rna
Length = 190
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>pdb|2K8G|A Chain A, Solution Structure Of Rrm2 Domain Of Pabp1
Length = 95
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 12 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 70
Query: 93 SN 94
N
Sbjct: 71 MN 72
>pdb|2CPZ|A Chain A, Solution Structure Of Rna Binding Domain 3 In Cug
Triplet Repeat Rna-Binding Protein 1
pdb|2RQ4|A Chain A, Refinement Of Rna Binding Domain 3 In Cug Triplet Repeat
Rna-Binding Protein 1
pdb|2RQC|A Chain A, Solution Structure Of Rna-Binding Domain 3 Of Cugbp1 In
Complex With Rna (Ug)3
Length = 115
Score = 38.1 bits (87), Expect = 0.010, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKS 93
LFI +LP + +++ + F +G+++ A++ + L C GF++Y N +SA AI
Sbjct: 28 LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSM 87
Query: 94 N 94
N
Sbjct: 88 N 88
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKSN 152
+++ + F +G+++ A++ + L C GF++Y N +SA AI N
Sbjct: 39 DQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMN 88
>pdb|2EIP|A Chain A, Inorganic Pyrophosphatase
pdb|2EIP|B Chain B, Inorganic Pyrophosphatase
pdb|1IPW|A Chain A, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1IPW|B Chain B, Inorganic Pyrophosphatase From Escherichia Coli With Three
Magnesium Ions
pdb|1JFD|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1JFD|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1FAJ|A Chain A, Inorganic Pyrophosphatase
pdb|1INO|A Chain A, Recombinant Inorganic Pyrophosphatase From Escherichia
Coli
Length = 175
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 27/130 (20%)
Query: 169 DIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHG-- 226
++P ++ + I+ +V+EIP NA +PIK +I K + + F
Sbjct: 4 NVPAGKDLPEDIY-VVIEIP--ANA----------DPIKYEIDKESGALFVDRFMSTAMF 50
Query: 227 YIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDE 286
Y NYG + T DGDP+DVL + G +I+ + +GV+ + DE
Sbjct: 51 YPCNYGYINHTL------------SLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDE 98
Query: 287 GQTDWKIIAI 296
D K++A+
Sbjct: 99 AGEDAKLVAV 108
>pdb|2FHO|B Chain B, Nmr Solution Structure Of The Human Spliceosomal Protein
Complex P14-Sf3b155
Length = 87
Score = 37.4 bits (85), Expect = 0.016, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
L+I+NLP+KIT EE + FG+YG I Q+ + +G ++ Y + A A
Sbjct: 15 LYIRNLPYKITAEEMYDIFGKYGPI--RQIRVGNTPETRGTAYVVYEDIFDAKNA 67
>pdb|2DNH|A Chain A, Solution Structure Of Rna Binding Domain In Bruno-Like 5
Rna Binding Protein
Length = 105
Score = 37.4 bits (85), Expect = 0.018, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+LF+ L + +EE+ F +G I + +L+ DG KGC F+ +++ A AI
Sbjct: 17 KLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAI 73
Score = 35.8 bits (81), Expect = 0.051, Method: Composition-based stats.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKI---SAVKAILKSNKKPYKGS 159
+EE+ F +G I + +L+ DG KGC F+ +++ +A+ A+ S P G+
Sbjct: 28 SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP--GA 85
Query: 160 ENGLISPFHD 169
+ L+ F D
Sbjct: 86 SSSLVVKFAD 95
>pdb|2F9D|A Chain A, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
pdb|2F9D|B Chain B, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
Length = 125
Score = 37.0 bits (84), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
L+I+NLP+KIT EE + FG+YG I Q+ + +G ++ Y + A A
Sbjct: 21 LYIRNLPYKITAEEMYDIFGKYGPI--RQIRVGNTPETRGTAYVVYEDIFDAKNA 73
>pdb|3ULH|A Chain A, Crystal Structure Of A Rna Binding Domain Of Tho Complex
Subunit 4 Protein (Thoc4) From Homo Sapiens At 2.54 A
Resolution
Length = 107
Score = 37.0 bits (84), Expect = 0.022, Method: Composition-based stats.
Identities = 17/68 (25%), Positives = 36/68 (52%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
+L + NL F +++ + +E F ++G + A + + G+ G +++ K A+KA +
Sbjct: 31 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAXKQY 90
Query: 94 NKKPYKGK 101
N P G+
Sbjct: 91 NGVPLDGR 98
>pdb|4F25|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human
Pabpc1 At Ph 6.0
pdb|4F26|A Chain A, Crystal Structure Of The Second Rrm Domain Of Human
Pabpc1 A Ph 9.0
Length = 115
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 1/62 (1%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 6 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 64
Query: 93 SN 94
N
Sbjct: 65 MN 66
>pdb|2DGU|A Chain A, Solution Structure Of The Rna Binding Domain In
Heterogeneous Nuclear Ribonucleoprotein Q
Length = 103
Score = 36.6 bits (83), Expect = 0.027, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 40/75 (53%), Gaps = 7/75 (9%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
LF++NL +TEE ++ F Q+G + + KLK FI++ + AVKA+ + N
Sbjct: 14 LFVRNLANTVTEEILEKAFSQFGKLERVK-------KLKDYAFIHFDERDGAVKAMEEMN 66
Query: 95 KKPYKGKITEEEFKE 109
K +G+ E F +
Sbjct: 67 GKDLEGENIEIVFAK 81
>pdb|2XS2|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Rna, Uuguucuu
Length = 102
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+F+ + ++ E E + F +YG + + +++ + G KG GF+++ N + K +
Sbjct: 12 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIV 67
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 148
++ E E + F +YG + + +++ + G KG GF+++ N + K +
Sbjct: 20 RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIV 67
>pdb|2XSF|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like
Length = 89
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+F+ + ++ E E + F +YG + + +++ + G KG GF+++ N + K +
Sbjct: 13 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIV 68
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 148
++ E E + F +YG + + +++ + G KG GF+++ N + K +
Sbjct: 21 RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIV 68
>pdb|2XS5|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS5|B Chain B, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Mvh Rna, Uguuc
pdb|2XS7|A Chain A, Crystal Structure Of The Rrm Domain Of Mouse Deleted In
Azoospermia-Like In Complex With Sycp3 Rna, Uuguuu
Length = 87
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 13/56 (23%), Positives = 31/56 (55%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+F+ + ++ E E + F +YG + + +++ + G KG GF+++ N + K +
Sbjct: 12 VFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIV 67
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 12/48 (25%), Positives = 27/48 (56%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 148
++ E E + F +YG + + +++ + G KG GF+++ N + K +
Sbjct: 20 RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIV 67
>pdb|1WHW|A Chain A, Solution Structure Of The N-Terminal Rna Binding Domain
From Hypothetical Protein Bab23448
Length = 99
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILK 92
RLF++NL + +EE+ ++ F YG + + + + K KG F+ + AVKA +
Sbjct: 10 RLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAE 69
Query: 93 SNKKPYKGKI 102
+ + ++G++
Sbjct: 70 VDGQVFQGRM 79
>pdb|2AU7|A Chain A, The R43q Active Site Variant Of E.Coli Inorganic
Pyrophosphatase
Length = 175
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 27/130 (20%)
Query: 169 DIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHG-- 226
++P ++ + I+ +V+EIP NA +PIK +I K + + F
Sbjct: 4 NVPAGKDLPEDIY-VVIEIP--ANA----------DPIKYEIDKESGALFVDQFMSTAMF 50
Query: 227 YIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDE 286
Y NYG + T DGDP+DVL + G + + + +GV+ + DE
Sbjct: 51 YPCNYGYINHTL------------SLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDE 98
Query: 287 GQTDWKIIAI 296
D K++A+
Sbjct: 99 AGEDAKLVAV 108
>pdb|1OBW|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|B Chain B, Structure Of Inorganic Pyrophosphatase
pdb|1OBW|C Chain C, Structure Of Inorganic Pyrophosphatase
pdb|1I6T|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|1I40|A Chain A, Structure Of Inorganic Pyrophosphatase
pdb|2AU6|A Chain A, Crystal Structure Of Catalytic Intermediate Of Inorganic
Pyrophosphatase
pdb|2AU8|A Chain A, Catalytic Intermediate Structure Of Inorganic
Pyrophosphatase
pdb|2AU9|A Chain A, Inorganic Pyrophosphatase Complexed With Substrate
pdb|2AUU|A Chain A, Inorganic Pyrophosphatase Complexed With Magnesium
Pyrophosphate And Fluoride
pdb|1IGP|A Chain A, X-Ray Crystallographic Studies Of Recombinant Inorganic
Pyrophosphatase From Escherichia Coli
Length = 175
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 27/130 (20%)
Query: 169 DIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHG-- 226
++P ++ + I+ +V+EIP NA +PIK +I K + + F
Sbjct: 4 NVPAGKDLPEDIY-VVIEIP--ANA----------DPIKYEIDKESGALFVDRFMSTAMF 50
Query: 227 YIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDE 286
Y NYG + T DGDP+DVL + G + + + +GV+ + DE
Sbjct: 51 YPCNYGYINHTL------------SLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDE 98
Query: 287 GQTDWKIIAI 296
D K++A+
Sbjct: 99 AGEDAKLVAV 108
>pdb|3HI9|A Chain A, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|B Chain B, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|C Chain C, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
pdb|3HI9|D Chain D, The X-Ray Crystal Structure Of The First Rna Recognition
Motif (Rrm1) Of The Au-Rich Element (Are) Binding
Protein Hur At 2.0 Angstrom Resolution
Length = 84
Score = 36.2 bits (82), Expect = 0.035, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAI 90
R L + LP +T++E + F G++ A+L+++ G G GF+NY A +AI
Sbjct: 4 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 63
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAI 148
+T++E + F G++ A+L+++ G G GF+NY A +AI
Sbjct: 16 MTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 63
>pdb|1MJZ|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D97n
Length = 175
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 27/130 (20%)
Query: 169 DIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHG-- 226
++P ++ + I+ +V+EIP NA +PIK +I K + + F
Sbjct: 4 NVPAGKDLPEDIY-VVIEIP--ANA----------DPIKYEIDKESGALFVDRFMSTAMF 50
Query: 227 YIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDE 286
Y NYG + T DGDP+DVL + G +I+ + +GV+ + +E
Sbjct: 51 YPCNYGYINHTL------------SLDGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTNE 98
Query: 287 GQTDWKIIAI 296
D K++A+
Sbjct: 99 AGEDAKLVAV 108
>pdb|1MJX|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D65n
pdb|1MJX|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D65n
Length = 175
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 59/130 (45%), Gaps = 27/130 (20%)
Query: 169 DIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHG-- 226
++P ++ + I+ +V+EIP NA +PIK +I K + + F
Sbjct: 4 NVPAGKDLPEDIY-VVIEIP--ANA----------DPIKYEIDKESGALFVDRFMSTAMF 50
Query: 227 YIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDE 286
Y NYG + T +GDP+DVL + G +I+ + +GV+ + DE
Sbjct: 51 YPCNYGYINHTL------------SLNGDPVDVLVPTPYPLQPGSVIRCRPVGVLKMTDE 98
Query: 287 GQTDWKIIAI 296
D K++A+
Sbjct: 99 AGEDAKLVAV 108
>pdb|1FJE|B Chain B, Solution Structure Of Nucleolin Rbd12 In Complex With Snre
Rna
pdb|1RKJ|A Chain A, Solution Structure Of The Complex Formed By The Two N-
Terminal Rna-Binding Domains Of Nucleolin And A Pre-Rrna
Target
Length = 175
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVK 88
L KNL F ITE+E KE F D ++ +L+ + DGK KG +I + ++ A K
Sbjct: 102 LLAKNLSFNITEDELKEVF---EDALEIRLV-SQDGKSKGIAYIEFKSEADAEK 151
>pdb|2F9J|A Chain A, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of
The Spliceosomal Protein P14 Bound To A Region Of
Sf3b155
pdb|2F9J|B Chain B, 3.0 Angstrom Resolution Structure Of A Y22m Mutant Of
The Spliceosomal Protein P14 Bound To A Region Of
Sf3b155
Length = 125
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
L I+NLP+KIT EE + FG+YG I Q+ + +G ++ Y + A A
Sbjct: 21 LMIRNLPYKITAEEMYDIFGKYGPI--RQIRVGNTPETRGTAYVVYEDIFDAKNA 73
>pdb|2JVO|A Chain A, Segmental Isotope Labeling Of Npl3
Length = 108
Score = 36.2 bits (82), Expect = 0.043, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
RLF++ P + E E E FG +G + + ++ L G F+ + SA KAI +
Sbjct: 33 RLFVRPFPLDVQESELNEIFGPFGPMKEVKI-------LNGFAFVEFEEAESAAKAIEEV 85
Query: 94 NKKPYKGKITE 104
+ K + + E
Sbjct: 86 HGKSFANQPLE 96
>pdb|1FJC|A Chain A, Solution Structure Of Nucleolin Rbd2
Length = 96
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 4/54 (7%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVK 88
L KNL F ITE+E KE F D ++ +L+ + DGK KG +I + ++ A K
Sbjct: 19 LLAKNLSFNITEDELKEVF---EDALEIRLV-SQDGKSKGIAYIEFKSEADAEK 68
>pdb|2OSQ|A Chain A, Nmr Structure Of Rrm-1 Of Yeast Npl3 Protein
Length = 74
Score = 35.4 bits (80), Expect = 0.059, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
RLF++ P + E E E FG +G + + ++ L G F+ + SA KAI +
Sbjct: 6 RLFVRPFPLDVQESELNEIFGPFGPMKEVKI-------LNGFAFVEFEEAESAAKAIEEV 58
Query: 94 NKKPYKGKITE 104
+ K + + E
Sbjct: 59 HGKSFANQPLE 69
>pdb|1HD0|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
pdb|1HD1|A Chain A, Heterogeneous Nuclear Ribonucleoprotein D0 (Hnrnp D0
Rbd1), Nmr
Length = 75
Score = 35.4 bits (80), Expect = 0.060, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKS 93
+FI L + T+++ K++F ++G+++D L L G+ +G GF+ + +V ++
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKES-ESVDKVMDQ 60
Query: 94 NKKPYKGKITE 104
+ GK+ +
Sbjct: 61 KEHKLNGKVID 71
Score = 29.3 bits (64), Expect = 4.8, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 103 TEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKSNKK 154
T+++ K++F ++G+++D L L G+ +G GF+ + S K + + K
Sbjct: 12 TKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK 64
>pdb|2KHC|A Chain A, Bruno Rrm3+
Length = 118
Score = 35.4 bits (80), Expect = 0.067, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKS 93
LFI +LP + T+ + F +G++I A++ + L C GF+++ N SA AI
Sbjct: 43 LFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAM 102
Query: 94 N 94
N
Sbjct: 103 N 103
>pdb|3NNH|A Chain A, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu
Rna
pdb|3NNH|C Chain C, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu
Rna
pdb|3NNH|B Chain B, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu
Rna
pdb|3NNH|D Chain D, Crystal Structure Of The Cugbp1 Rrm1 With Guuguuuuguuu
Rna
Length = 88
Score = 35.0 bits (79), Expect = 0.089, Method: Composition-based stats.
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADG---KLKGCGFINYANKISAVKA 89
++F+ +P +E++ +E F QYG + + +L++ + KGC F+ + + +A++A
Sbjct: 5 KMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEA 63
>pdb|2FC9|A Chain A, Solution Structure Of The Rrm_1 Domain Of Ncl Protein
Length = 101
Score = 35.0 bits (79), Expect = 0.092, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
L + NL + TEE +E F + I ++ +N +GK KG FI +A+ A +A+ N
Sbjct: 18 LVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCN 74
Query: 95 KKPYKGKITEEEFK 108
K+ +G+ E +
Sbjct: 75 KREIEGRAIRLELQ 88
>pdb|3S7R|A Chain A, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
pdb|3S7R|B Chain B, Crystal Structure Of A Heterogeneous Nuclear
Ribonucleoprotein AB (Hnrpab) From Homo Sapiens At 2.15
A Resolution
Length = 87
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/73 (21%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAIL 91
G+ F+ L + ++++ K++F ++G+++D + + + G+ +G GFI + + S V+ +L
Sbjct: 12 GKXFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKXDPNTGRSRGFGFILFKDAAS-VEKVL 70
Query: 92 KSNKKPYKGKITE 104
+ G++ +
Sbjct: 71 DQKEHRLDGRVID 83
>pdb|1MJY|A Chain A, Structure Of Inorganic Pyrophosphatase Mutant D70n
pdb|1MJY|B Chain B, Structure Of Inorganic Pyrophosphatase Mutant D70n
Length = 175
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 27/130 (20%)
Query: 169 DIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHG-- 226
++P ++ + I+ +V+EIP NA +PIK +I K + + F
Sbjct: 4 NVPAGKDLPEDIY-VVIEIP--ANA----------DPIKYEIDKESGALFVDRFMSTAMF 50
Query: 227 YIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDE 286
Y NYG + T DGDP++VL + G + + + +GV+ + DE
Sbjct: 51 YPCNYGYINHTL------------SLDGDPVNVLVPTPYPLQPGSVTRCRPVGVLKMTDE 98
Query: 287 GQTDWKIIAI 296
D K++A+
Sbjct: 99 AGEDAKLVAV 108
>pdb|2DK2|A Chain A, Solution Structure Of Rrm Domain In Heterogeneous
Nuclear Ribonucleoprotein R (Hnrnp R)
Length = 97
Score = 34.3 bits (77), Expect = 0.13, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
LF++NL +TEE ++ F ++G + + KLK F+++ ++ +AVKA+ + N
Sbjct: 18 LFVRNLATTVTEEILEKSFSEFGKLERVK-------KLKDYAFVHFEDRGAAVKAMDEMN 70
Query: 95 KK 96
K
Sbjct: 71 GK 72
>pdb|1X4H|A Chain A, Solution Structure Of Rrm Domain In Rna-Binding Protein
28
Length = 111
Score = 34.3 bits (77), Expect = 0.14, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGK-LKGCGFINYANKISAVKAI 90
+FI+NL F EE E Q+GD+ +++ + D + KGC F + + +A K +
Sbjct: 18 VFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 74
>pdb|3SMZ|A Chain A, Human Raver1 Rrm1-3 Domains (Residues 39-320)
Length = 284
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLL-KNADGKLKGCGFINYANKISAVKA 89
L + NLP +T+++F+E +G + L+ G+ KG GF Y K SA +A
Sbjct: 98 LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 153
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 28/138 (20%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI- 90
R ++ I+ LP +T +E + Y +L K KG F+ N A AI
Sbjct: 22 RRKILIRGLPGDVTNQEVHDLLSDY------ELKYCFVDKYKGTAFVTLLNGEQAEAAIN 75
Query: 91 -----------LKSNKKPYKG---------KITEEEFKEHFGQYGDIIDAQLL-KNADGK 129
L +P +T+++F+E +G + L+ G+
Sbjct: 76 AFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ 135
Query: 130 LKGCGFINYANKISAVKA 147
KG GF Y K SA +A
Sbjct: 136 SKGYGFAEYMKKDSAARA 153
>pdb|3H2U|B Chain B, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
pdb|3H2U|D Chain D, Human Raver1 Rrm1, Rrm2, And Rrm3 Domains In Complex With
Human Vinculin Tail Domain Vt
Length = 283
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLL-KNADGKLKGCGFINYANKISAVKA 89
L + NLP +T+++F+E +G + L+ G+ KG GF Y K SA +A
Sbjct: 96 LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 151
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 28/138 (20%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI- 90
R ++ I+ LP +T +E + Y +L K KG F+ N A AI
Sbjct: 20 RRKILIRGLPGDVTNQEVHDLLSDY------ELKYCFVDKYKGTAFVTLLNGEQAEAAIN 73
Query: 91 -----------LKSNKKPYKG---------KITEEEFKEHFGQYGDIIDAQLL-KNADGK 129
L +P +T+++F+E +G + L+ G+
Sbjct: 74 AFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ 133
Query: 130 LKGCGFINYANKISAVKA 147
KG GF Y K SA +A
Sbjct: 134 SKGYGFAEYMKKDSAARA 151
>pdb|3VF0|B Chain B, Raver1 In Complex With Metavinculin L954 Deletion Mutant
Length = 285
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLL-KNADGKLKGCGFINYANKISAVKA 89
L + NLP +T+++F+E +G + L+ G+ KG GF Y K SA +A
Sbjct: 98 LCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARA 153
Score = 29.6 bits (65), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 28/138 (20%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI- 90
R ++ I+ LP +T +E + Y +L K KG F+ N A AI
Sbjct: 22 RRKILIRGLPGDVTNQEVHDLLSDY------ELKYCFVDKYKGTAFVTLLNGEQAEAAIN 75
Query: 91 -----------LKSNKKPYKG---------KITEEEFKEHFGQYGDIIDAQLL-KNADGK 129
L +P +T+++F+E +G + L+ G+
Sbjct: 76 AFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQ 135
Query: 130 LKGCGFINYANKISAVKA 147
KG GF Y K SA +A
Sbjct: 136 SKGYGFAEYMKKDSAARA 153
>pdb|4FXV|A Chain A, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
pdb|4FXV|B Chain B, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
pdb|4FXV|C Chain C, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
pdb|4FXV|D Chain D, Crystal Structure Of An Elav-Like Protein 1 (Elavl1)
From Homo Sapiens At 1.90 A Resolution
Length = 99
Score = 33.9 bits (76), Expect = 0.21, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAI 90
L + LP T++E + F G++ A+L+++ G G GF+NY A +AI
Sbjct: 22 LIVNYLPQNXTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
Score = 29.3 bits (64), Expect = 4.2, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAI 148
T++E + F G++ A+L+++ G G GF+NY A +AI
Sbjct: 32 TQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAI 78
>pdb|2CPF|A Chain A, Solution Structure Of The Penultimate Rna Recognition
Motif Of Hypothetical Rna-Binding Protein Rbm19
Length = 98
Score = 33.5 bits (75), Expect = 0.22, Method: Composition-based stats.
Identities = 25/60 (41%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQL--LKNADGKL--KGCGFINYANKISAVKAI 90
LFIKNL F TEE K F + G I + KN G L G GF+ Y A KA+
Sbjct: 8 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 67
>pdb|1H6K|Z Chain Z, Nuclear Cap Binding Complex
pdb|1H6K|X Chain X, Nuclear Cap Binding Complex
pdb|1H6K|Y Chain Y, Nuclear Cap Binding Complex
Length = 98
Score = 33.5 bits (75), Expect = 0.25, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCG--FINYANKISAVKAILK 92
L++ NL F TEE+ E F + GDI +++ D CG F+ Y ++ A A+
Sbjct: 21 LYVGNLSFYTTEEQIYELFSKSGDI--KKIIMGLDKMKTACGFCFVEYYSRADAENAMRY 78
Query: 93 SNKKPYKGKITEEEFKEHF 111
N +I ++ F
Sbjct: 79 INGTRLDDRIIRTDWDAGF 97
>pdb|3EGN|A Chain A, C-Terminal Rna Recognition Motif Of The U11U12 65K PROTEIN
Length = 143
Score = 33.1 bits (74), Expect = 0.29, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 10/57 (17%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGD--------IIDAQLLKNADGKLKGCGFINYAN 82
R+++KNL + E++ K FG+Y D + D +L+K +G++KG FI N
Sbjct: 47 RIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMK--EGRMKGQAFIGLPN 101
>pdb|1WF0|A Chain A, Solution Structure Of Rrm Domain In Tar Dna-Binding
Protein- 43
Length = 88
Score = 33.1 bits (74), Expect = 0.34, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 100 GKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYAN 140
G +TE+E +E F QYGD++D + K + F+ +A+
Sbjct: 15 GDMTEDELREFFSQYGDVMDVFIPK----PFRAFAFVTFAD 51
Score = 31.6 bits (70), Expect = 0.95, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYAN 82
+F+ +TE+E +E F QYGD++D + K + F+ +A+
Sbjct: 8 VFVGRCTGDMTEDELREFFSQYGDVMDVFIPK----PFRAFAFVTFAD 51
>pdb|3I4Q|A Chain A, Structure Of A Putative Inorganic Pyrophosphatase From The
Oil- Degrading Bacterium Oleispira Antarctica
Length = 176
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 19/149 (12%)
Query: 186 EIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHG--YIWNYGALPQTWENPDE 243
++P +EI N +PIK +I K + + F Y NYG + T +
Sbjct: 12 DLPNDIYVAIEIPANA--SPIKYEIDKDXDALLVDRFXATPXFYPANYGYINNTLAD--- 66
Query: 244 TDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNA 303
DGD +DVL I G +I+ + +GV+ DE D K++A+ ++
Sbjct: 67 ---------DGDALDVLVITPYPVAPGSVIRARPVGVLKXSDEAGGDEKLLAVP-HEKLT 116
Query: 304 AKLNDVADIETHFPGYLK-ATNEWFKIYK 331
ND+ DI+ P LK +F+ YK
Sbjct: 117 QLYNDIHDIDD-VPQLLKDQIVHFFEHYK 144
>pdb|2YTC|A Chain A, Solution Structure Of Rna Binding Domain In Pre-Mrna-
Splicing Factor Rbm22
Length = 85
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 5/62 (8%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
L++ L ITE + + HF Q+G+I +++ + C FI +A + +A A KS
Sbjct: 15 LYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSF 69
Query: 95 KK 96
K
Sbjct: 70 NK 71
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 154
ITE + + HF Q+G+I +++ + C FI +A + +A A KS K
Sbjct: 24 ITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNK 71
>pdb|2DGS|A Chain A, Solution Structure Of The Second Rna Binding Domain In
Daz- Associated Protein 1
Length = 99
Score = 32.7 bits (73), Expect = 0.40, Method: Composition-based stats.
Identities = 14/58 (24%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADG-KLKGCGFINYANKISAVKAI 90
++F+ +P E E +E+F ++G + + ++ +A+ + +G GFI + ++ S +A+
Sbjct: 12 KIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAV 69
>pdb|2CPX|A Chain A, Solution Structure Of Rna Binding Domain In Hypothetical
Protein Flj11016
Length = 115
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 35 LFIKNLPFKITEEEFKEHFGQY----GDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
L++KNL ++TE + F ++ G I +++ G+++G FI + NK A +A+
Sbjct: 28 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQAL 84
Query: 91 LKSNKKPYKGKITEEEF 107
N GKI EF
Sbjct: 85 HLVNGYKLYGKILVIEF 101
>pdb|1SY7|A Chain A, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution.
pdb|1SY7|B Chain B, Crystal Structure Of The Catalase-1 From Neurospora
Crassa, Native Structure At 1.75a Resolution
Length = 715
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 17/68 (25%)
Query: 70 GKLKGCGFINYANKISAVKAILKSNKKPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGK 129
LK G++ YA K++ +KA +S K FKEHF Q AQL N+
Sbjct: 413 ASLKEGGYLEYAQKVAGIKARARSAK-----------FKEHFSQ------AQLFYNSMSP 455
Query: 130 LKGCGFIN 137
++ IN
Sbjct: 456 IEKQHMIN 463
>pdb|2YWK|A Chain A, Crystal Structure Of Rrm-Domain Derived From Human
Putative Rna-Binding Protein 11
Length = 95
Score = 32.3 bits (72), Expect = 0.51, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 29/56 (51%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+F+ NL ++ EE E F Q G + + K+ +GK K GF+ + + S AI
Sbjct: 19 VFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAI 74
>pdb|2KVI|A Chain A, Structure Of Nab3 Rrm
Length = 96
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 32 RGRLFIKNLPFK-ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+ RLFI NLP K +++E+ F YG I+ +KNA GFI + N S AI
Sbjct: 10 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQIN-IKNA------FGFIQFDNPQSVRDAI 62
>pdb|2XNQ|A Chain A, Structural Insights Into Cis Element Recognition Of Non-
Polyadenylated Rnas By The Nab3-Rrm
Length = 97
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 32 RGRLFIKNLPFK-ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+ RLFI NLP K +++E+ F YG I+ +KNA GFI + N S AI
Sbjct: 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQIN-IKNA------FGFIQFDNPQSVRDAI 74
>pdb|2XNR|A Chain A, Structural Insights Into Cis Element Recognition Of Non-
Polyadenylated Rnas By The Nab3-Rrm
Length = 97
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 32 RGRLFIKNLPFK-ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+ RLFI NLP K +++E+ F YG I+ +KNA GFI + N S AI
Sbjct: 22 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQIN-IKNA------FGFIQFDNPQSVRDAI 74
>pdb|2MSS|A Chain A, Musashi1 Rbd2, Nmr
pdb|2MST|A Chain A, Musashi1 Rbd2, Nmr
Length = 75
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLL-KNADGKLKGCGFINYANK 83
+F+ L T E+ K +F Q+G + DA L+ + +G GF+ + ++
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESE 51
>pdb|2L41|A Chain A, Nab3 Rrm - Ucuu Complex
Length = 77
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 32 RGRLFIKNLPFK-ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+ RLFI NLP K +++E+ F YG I+ +KNA GFI + N S AI
Sbjct: 2 KSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQIN-IKNA------FGFIQFDNPQSVRDAI 54
>pdb|3UR7|A Chain A, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR7|B Chain B, Higher-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|A Chain A, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
pdb|3UR8|B Chain B, Lower-density Crystal Structure Of Potato
Endo-1,3-beta-glucanase
Length = 323
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 203 LNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTW 238
+NPI + + NL +AN++P+ G+I N A+P ++
Sbjct: 159 INPIIGFLARHNLPLLANIYPYFGHIDNTNAVPLSY 194
>pdb|2J0Q|D Chain D, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|G Chain G, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
Length = 109
Score = 30.4 bits (67), Expect = 1.9, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKS 93
LF+ + + TEE+ + F +YG+I + L L G LKG + Y A A+
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 69
Query: 94 NKKPYKGK 101
N + G+
Sbjct: 70 NGQDLMGQ 77
>pdb|4GZI|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose
pdb|4GZJ|A Chain A, Active-site Mutant Of Potato Endo-1,3-beta-glucanase In
Complex With Laminaratriose And Laminaratetrose
Length = 323
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 203 LNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTW 238
+NPI + + NL +AN++P+ G+I N A+P ++
Sbjct: 159 INPIIGFLARHNLPLLANIYPYFGHIDNTNAVPLSY 194
>pdb|2J0S|D Chain D, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 89
Score = 30.4 bits (67), Expect = 2.1, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKS 93
LF+ + + TEE+ + F +YG+I + L L G LKG + Y A A+
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 69
Query: 94 NKKPYKGK 101
N + G+
Sbjct: 70 NGQDLMGQ 77
>pdb|2HYI|B Chain B, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|H Chain H, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
Length = 91
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKS 93
LF+ + + TEE+ + F +YG+I + L L G LKG + Y A A+
Sbjct: 12 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 71
Query: 94 NKKPYKGK 101
N + G+
Sbjct: 72 NGQDLMGQ 79
>pdb|2XB2|D Chain D, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|Z Chain Z, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 90
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKS 93
LF+ + + TEE+ + F +YG+I + L L G LKG + Y A A+
Sbjct: 10 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 69
Query: 94 NKKPYKGK 101
N + G+
Sbjct: 70 NGQDLMGQ 77
>pdb|3EX7|B Chain B, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|G Chain G, The Crystal Structure Of Ejc In Its Transition State
Length = 126
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKS 93
LF+ + + TEE+ + F +YG+I + L L G LKG + Y A A+
Sbjct: 25 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 84
Query: 94 NKKPYKGK 101
N + G+
Sbjct: 85 NGQDLMGQ 92
>pdb|3PV9|D Chain D, Structure Of Ph1245, A Cas1 From Pyrococcus Horikoshii
pdb|3PV9|E Chain E, Structure Of Ph1245, A Cas1 From Pyrococcus Horikoshii
Length = 322
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 78/187 (41%), Gaps = 20/187 (10%)
Query: 49 FKEHFGQY-GDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKSNKKPYKGKITEEE 106
F H+G Y G + L + D ++ ++N ++ K+ + K + +
Sbjct: 65 FFNHYGYYDGTFYPRETLLSGDLIIRQAEHYLNKEKRLFLAKSFVTGGTKNMERNLKNWG 124
Query: 107 FKEHFGQYGDII-DAQLLK---NADGKLKGCGFINYANKISAVKAILKSNKKPYKGSENG 162
K Y D + DA+ + N + +++ + + + I+K ++P K N
Sbjct: 125 IKAKLSDYLDELNDARKITEIMNVEARIRQEYYAKWDENLPEEFKIVKRTRRPPKNEMNA 184
Query: 163 LISPFHDIPLYSNVKDKIFNM-------VVEIPRWTNAKMEINLNEPLNPIKQD------ 209
LIS F + LY+ + +I+N + P + ++L+E PI D
Sbjct: 185 LIS-FLNSRLYATIITEIYNTQLAPTISYLHEPSERRFSLSLDLSEIFKPIIADRVANRL 243
Query: 210 IKKGNLR 216
+KKG+L+
Sbjct: 244 VKKGSLK 250
>pdb|1P27|B Chain B, Crystal Structure Of The Human Y14MAGOH COMPLEX
pdb|1P27|D Chain D, Crystal Structure Of The Human Y14MAGOH COMPLEX
Length = 106
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKS 93
LF+ + + TEE+ + F +YG+I + L L G LKG + Y A A+
Sbjct: 26 LFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 85
Query: 94 NKKPYKGK 101
N + G+
Sbjct: 86 NGQDLMGQ 93
>pdb|2LA4|A Chain A, Nmr Structure Of The C-Terminal Rrm Domain Of Poly(U)
Binding 1
Length = 101
Score = 30.0 bits (66), Expect = 2.8, Method: Composition-based stats.
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 36 FIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 95
+I N+P TE + F +G I+D + KGC FI Y A I+
Sbjct: 31 YIGNIPHFATEADLIPLFQNFGFILDFKHYPE-----KGCCFIKYDTHEQAAVCIVALAN 85
Query: 96 KPYKGK 101
P++G+
Sbjct: 86 FPFQGR 91
>pdb|1H2T|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|X Chain X, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2U|Y Chain Y, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
In Complex With A Cap Analogue M7gpppg
pdb|1H2V|Z Chain Z, Structure Of The Human Nuclear Cap-Binding-Complex (Cbc)
pdb|1N52|B Chain B, Cap Binding Complex
pdb|1N54|B Chain B, Cap Binding Complex M7gpppg Free
pdb|3FEX|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex.
pdb|3FEY|B Chain B, Crystal Structure Of The Cbc-Importin Alpha Complex
Length = 156
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLK--GCG--FINYANKISAVKAI 90
L++ NL F TEE+ E F + GDI +++ D K+K CG F+ Y ++ A A+
Sbjct: 42 LYVGNLSFYTTEEQIYELFSKSGDI--KKIIMGLD-KMKKTACGFCFVEYYSRADAENAM 98
>pdb|3CW1|K Chain K, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|6 Chain 6, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|7 Chain 7, Crystal Structure Of Human Spliceosomal U1 Snrnp
pdb|3CW1|8 Chain 8, Crystal Structure Of Human Spliceosomal U1 Snrnp
Length = 216
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLL-KNADGKLKGCGFINYANKISAVKAILKS 93
LF+ + + TE + + F YG I ++ GK +G FI Y ++ A +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 94 NKKPYKGK 101
+ K G+
Sbjct: 165 DGKKIDGR 172
>pdb|3I4I|A Chain A, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
pdb|3I4I|B Chain B, Crystal Structure Of A Prokaryotic Beta-1,3-1,4-Glucanase
(Lichenase) Derived From A Mouse Hindgut Metagenome
Length = 234
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 28/61 (45%), Gaps = 10/61 (16%)
Query: 110 HFGQYGDIIDAQLLKNADGKLKGCGF--INYANKISAVKAILK--------SNKKPYKGS 159
HFG+ D D+QL + ADG G F I A I IL S+ KPY G+
Sbjct: 23 HFGEGFDYYDSQLWEKADGWGNGGVFNCIWRAYNIELKDGILNLSITDDMPSSSKPYAGA 82
Query: 160 E 160
E
Sbjct: 83 E 83
>pdb|1IJ5|A Chain A, Metal-Free Structure Of Multidomain Ef-Hand Protein,
Cbp40, From True Slime Mold
pdb|1IJ6|A Chain A, Ca2+-Bound Structure Of Multidomain Ef-Hand Protein,
Cbp40, From True Slime Mold
Length = 323
Score = 29.3 bits (64), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 14/111 (12%)
Query: 43 KITEEEFKEHFGQYGDIIDAQLLK--------NADGKLKGCGFINYANKISAVKAILKSN 94
K + ++ K+ +Y D I LK + G++ + AN ++A+ A +
Sbjct: 138 KFSFQDLKQVLAKYADTIPEGPLKKLFVMVENDTKGRMSYITLVAVANDLAALVADFRKI 197
Query: 95 KKPYKGKITEEEFKEHFGQYG----DIIDAQLLKNAD-GKLKGCGFINYAN 140
G ++ +EF+EHF + G + DA L + AD + GF Y +
Sbjct: 198 DTNSNGTLSRKEFREHFVRLGFDKKSVQDA-LFRYADEDESDDVGFSEYVH 247
>pdb|2DIV|A Chain A, Solution Structure Of The Rrm Domain Of Trna
Selenocysteine Associated Protein
Length = 99
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGD-IIDAQLLKNA-DGKLKGCGFINYANKISAVKAILK 92
L++ +L + E F G+ ++ ++++N G G F+ +A+ +A K + K
Sbjct: 12 LWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHK 71
Query: 93 SNKKPYKGKITEEEFKEHFGQY 114
N KP G + FK ++ Y
Sbjct: 72 INGKPLPGATPAKRFKLNYATY 93
>pdb|3PGW|S Chain S, Crystal Structure Of Human U1 Snrnp
pdb|3PGW|L Chain L, Crystal Structure Of Human U1 Snrnp
Length = 437
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLL-KNADGKLKGCGFINYANKISAVKAILKS 93
LF+ + + TE + + F YG I ++ GK +G FI Y ++ A +
Sbjct: 105 LFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164
Query: 94 NKKPYKGK 101
+ K G+
Sbjct: 165 DGKKIDGR 172
>pdb|1X4E|A Chain A, Solution Structure Of Rrm Domain In Rna Binding Motif,
Single-Stranded Interacting Protein 2
Length = 85
Score = 28.9 bits (63), Expect = 5.8, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQ-LLKNADGKLKGCGFINYANKISAVKAI 90
L+I+ L T+++ + YG I+ + +L K KG GF+++ + +A KA+
Sbjct: 8 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAV 64
>pdb|2HGM|A Chain A, Nmr Structure Of The Second Qrrm Domain Of Human Hnrnp F
pdb|2KG0|A Chain A, Structure Of The Second Qrrm Domain Of Hnrnp F In Complex
With A Agggau G-Tract Rna
Length = 126
Score = 28.9 bits (63), Expect = 6.0, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 1/65 (1%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLK-NADGKLKGCGFINYANKISAVKAIL 91
G + ++ LPF T+EE + F + + L + +GK+ G F+ +A++ A KA+
Sbjct: 43 GFVRLRGLPFGCTKEEIVQFFSGLEIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG 102
Query: 92 KSNKK 96
K ++
Sbjct: 103 KHKER 107
>pdb|1WTB|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain
Of Hnrnp D (Auf1) With Telomere Dna
pdb|1X0F|A Chain A, Complex Structure Of The C-Terminal Rna-Binding Domain
Of Hnrnp D(Auf1) With Telomeric Dna
Length = 79
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILK 92
++F+ L EE+ +E+FG +G++ +L + N K +G FI + + VK I++
Sbjct: 3 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEE-EPVKKIME 61
>pdb|3FOJ|A Chain A, Crystal Structure Of Ssp1007 From Staphylococcus
Saprophyticus Subsp. Saprophyticus. Northeast Structural
Genomics Target Syr101a
Length = 100
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 331 KIPDGKPENVLNTRVEGESSQGFIPGCR 358
KI D P N+++ R + E++ G IPG
Sbjct: 12 KILDANPVNIVDVRTDQETAXGIIPGAE 39
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,816,868
Number of Sequences: 62578
Number of extensions: 643078
Number of successful extensions: 1862
Number of sequences better than 100.0: 176
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 286
length of query: 451
length of database: 14,973,337
effective HSP length: 102
effective length of query: 349
effective length of database: 8,590,381
effective search space: 2998042969
effective search space used: 2998042969
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)