Query psy300
Match_columns 451
No_of_seqs 462 out of 3133
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 22:56:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy300.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/300hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1626|consensus 100.0 1.1E-70 2.4E-75 512.8 14.8 223 146-369 9-235 (279)
2 PLN02707 Soluble inorganic pyr 100.0 5.4E-67 1.2E-71 502.6 16.9 217 146-370 38-260 (267)
3 PRK00642 inorganic pyrophospha 100.0 4.8E-56 1E-60 414.4 16.4 185 164-364 9-203 (205)
4 PLN02373 soluble inorganic pyr 100.0 3E-54 6.5E-59 396.3 15.3 176 164-367 9-184 (188)
5 PRK01250 inorganic pyrophospha 100.0 1.6E-52 3.5E-57 382.0 15.0 170 166-363 2-175 (176)
6 PRK02230 inorganic pyrophospha 100.0 1.9E-50 4.2E-55 369.1 14.6 159 179-364 3-162 (184)
7 cd00412 pyrophosphatase Inorga 100.0 1.3E-48 2.9E-53 349.8 13.2 153 180-359 2-155 (155)
8 PF00719 Pyrophosphatase: Inor 100.0 1.6E-48 3.5E-53 351.2 9.3 155 182-363 1-156 (156)
9 COG0221 Ppa Inorganic pyrophos 100.0 1.6E-46 3.4E-51 340.4 12.8 170 165-363 1-171 (171)
10 TIGR01659 sex-lethal sex-letha 99.9 7.3E-23 1.6E-27 207.8 16.7 130 27-156 102-260 (346)
11 TIGR01645 half-pint poly-U bin 99.9 4.5E-22 9.7E-27 212.7 15.5 131 26-156 101-271 (612)
12 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 8.7E-22 1.9E-26 200.2 16.1 126 31-156 2-156 (352)
13 KOG0144|consensus 99.9 4.3E-22 9.3E-27 198.5 12.1 127 29-155 31-189 (510)
14 KOG0148|consensus 99.9 4.6E-21 9.9E-26 181.5 12.3 125 26-155 56-224 (321)
15 TIGR01628 PABP-1234 polyadenyl 99.8 1.5E-20 3.2E-25 203.2 15.2 124 33-156 1-154 (562)
16 KOG0145|consensus 99.8 2.6E-20 5.5E-25 175.4 12.9 127 29-155 38-193 (360)
17 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 9E-20 2E-24 185.4 15.9 127 30-156 87-336 (352)
18 TIGR01622 SF-CC1 splicing fact 99.8 1.1E-19 2.3E-24 191.5 16.1 126 30-156 87-253 (457)
19 TIGR01628 PABP-1234 polyadenyl 99.8 1.4E-19 3.1E-24 195.6 16.2 128 29-156 175-351 (562)
20 KOG0117|consensus 99.8 2E-19 4.4E-24 180.3 13.3 126 24-156 75-318 (506)
21 TIGR01642 U2AF_lg U2 snRNP aux 99.8 5.5E-18 1.2E-22 180.8 15.2 126 31-156 294-489 (509)
22 TIGR01648 hnRNP-R-Q heterogene 99.8 9.4E-18 2E-22 179.3 15.7 122 31-152 57-203 (578)
23 KOG0145|consensus 99.8 3.6E-18 7.9E-23 161.0 10.7 131 25-155 120-344 (360)
24 KOG0124|consensus 99.7 5.6E-18 1.2E-22 166.0 9.0 128 26-153 107-274 (544)
25 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 7.1E-17 1.5E-21 171.6 14.7 119 31-157 1-160 (481)
26 KOG0131|consensus 99.7 3.7E-17 8E-22 147.3 9.3 128 28-155 5-163 (203)
27 TIGR01642 U2AF_lg U2 snRNP aux 99.7 1.2E-16 2.6E-21 170.4 14.1 122 29-156 172-362 (509)
28 KOG0123|consensus 99.7 1.1E-16 2.5E-21 163.6 13.2 117 33-156 2-140 (369)
29 KOG0123|consensus 99.7 1.5E-16 3.3E-21 162.7 13.0 120 35-156 79-233 (369)
30 KOG0127|consensus 99.7 1.2E-16 2.6E-21 163.6 12.0 125 33-157 6-184 (678)
31 TIGR01622 SF-CC1 splicing fact 99.7 2.8E-16 6E-21 165.6 14.1 123 31-156 185-435 (457)
32 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.7 8E-16 1.7E-20 163.5 15.3 122 30-156 273-461 (481)
33 KOG0127|consensus 99.6 1.6E-15 3.6E-20 155.4 13.3 122 31-152 116-355 (678)
34 KOG0109|consensus 99.6 2.3E-15 4.9E-20 144.3 11.0 113 33-159 3-140 (346)
35 TIGR01648 hnRNP-R-Q heterogene 99.6 3.5E-14 7.6E-19 152.0 14.0 120 30-156 136-294 (578)
36 KOG0146|consensus 99.5 2.8E-14 6E-19 135.4 10.5 68 29-96 16-83 (371)
37 KOG1626|consensus 99.5 4.1E-15 8.8E-20 140.2 2.8 46 381-427 24-69 (279)
38 TIGR01645 half-pint poly-U bin 99.5 2.5E-13 5.4E-18 145.9 14.5 67 31-97 203-270 (612)
39 KOG0144|consensus 99.5 4.1E-14 8.9E-19 141.9 7.5 67 30-96 122-188 (510)
40 KOG0110|consensus 99.5 8.2E-14 1.8E-18 147.1 9.7 125 32-156 515-680 (725)
41 KOG0148|consensus 99.5 1.7E-13 3.7E-18 130.4 9.8 122 29-156 3-129 (321)
42 KOG4205|consensus 99.5 7.8E-14 1.7E-18 138.7 7.2 120 31-150 5-158 (311)
43 KOG0147|consensus 99.4 7.6E-14 1.7E-18 143.9 6.0 125 29-154 176-343 (549)
44 PLN03134 glycine-rich RNA-bind 99.4 4.5E-13 9.9E-18 120.0 9.6 72 29-100 31-103 (144)
45 PF00076 RRM_1: RNA recognitio 99.4 4.4E-13 9.4E-18 103.5 7.9 66 35-100 1-66 (70)
46 PLN02707 Soluble inorganic pyr 99.4 1.5E-13 3.2E-18 133.1 5.6 48 380-429 52-99 (267)
47 KOG0105|consensus 99.4 1.1E-12 2.3E-17 118.8 10.5 119 30-156 4-175 (241)
48 KOG0147|consensus 99.3 3.2E-12 7E-17 132.0 8.9 122 31-156 277-515 (549)
49 KOG1548|consensus 99.3 1.4E-11 3.1E-16 120.9 12.3 126 28-156 130-339 (382)
50 PF14259 RRM_6: RNA recognitio 99.3 1.5E-11 3.3E-16 95.7 8.2 67 35-101 1-67 (70)
51 KOG0149|consensus 99.3 6.4E-12 1.4E-16 117.9 7.1 75 29-104 9-84 (247)
52 KOG4212|consensus 99.2 7.8E-11 1.7E-15 118.6 12.9 123 32-154 44-279 (608)
53 KOG0126|consensus 99.2 3.2E-12 7E-17 115.4 0.7 101 1-101 1-105 (219)
54 TIGR01659 sex-lethal sex-letha 99.2 6.7E-11 1.5E-15 120.5 9.3 71 30-100 191-262 (346)
55 KOG0122|consensus 99.2 7.4E-11 1.6E-15 111.2 8.6 70 29-98 186-256 (270)
56 KOG4206|consensus 99.1 6.2E-10 1.4E-14 104.2 12.2 118 30-153 7-205 (221)
57 smart00362 RRM_2 RNA recogniti 99.1 2.9E-10 6.2E-15 86.6 8.1 66 34-100 1-66 (72)
58 KOG0125|consensus 99.1 1.3E-10 2.8E-15 113.5 7.0 75 26-101 90-164 (376)
59 PRK00642 inorganic pyrophospha 99.1 1.3E-10 2.7E-15 109.3 6.2 44 382-426 6-49 (205)
60 PLN03120 nucleic acid binding 99.1 3.2E-10 7E-15 109.6 9.0 68 31-101 3-70 (260)
61 KOG0106|consensus 99.1 8.8E-11 1.9E-15 110.7 4.9 113 32-158 1-160 (216)
62 KOG0107|consensus 99.1 2.4E-10 5.2E-15 103.0 6.4 67 30-100 8-74 (195)
63 KOG0113|consensus 99.1 3.2E-10 7E-15 109.6 7.5 71 30-100 99-170 (335)
64 KOG0124|consensus 99.1 1.2E-09 2.6E-14 108.0 11.4 66 29-94 207-273 (544)
65 KOG4207|consensus 99.0 2.6E-10 5.5E-15 105.2 5.2 87 27-117 8-95 (256)
66 PLN03213 repressor of silencin 99.0 6.9E-10 1.5E-14 113.3 8.5 69 30-101 8-78 (759)
67 PLN02373 soluble inorganic pyr 99.0 3.5E-10 7.6E-15 104.8 5.8 54 383-439 7-60 (188)
68 KOG4211|consensus 99.0 2.5E-09 5.4E-14 109.7 12.3 122 31-154 9-168 (510)
69 KOG0114|consensus 99.0 1.5E-09 3.2E-14 90.0 8.5 71 28-100 14-84 (124)
70 smart00360 RRM RNA recognition 99.0 1.2E-09 2.6E-14 82.7 7.6 64 37-100 1-65 (71)
71 PLN03121 nucleic acid binding 99.0 1.2E-09 2.5E-14 104.3 8.9 68 31-101 4-71 (243)
72 COG0724 RNA-binding proteins ( 99.0 1.2E-09 2.6E-14 104.2 9.0 70 32-101 115-185 (306)
73 KOG0121|consensus 99.0 5.2E-10 1.1E-14 96.0 5.0 95 25-119 29-127 (153)
74 cd00590 RRM RRM (RNA recogniti 99.0 3.5E-09 7.6E-14 81.0 8.6 67 34-100 1-67 (74)
75 KOG1457|consensus 98.9 1.2E-08 2.5E-13 95.4 12.0 125 30-157 32-274 (284)
76 KOG0120|consensus 98.9 2.2E-09 4.8E-14 112.3 7.9 126 31-156 288-479 (500)
77 KOG0108|consensus 98.9 4.9E-09 1.1E-13 108.9 8.1 69 33-101 19-88 (435)
78 KOG0111|consensus 98.8 2.5E-09 5.5E-14 99.4 3.3 73 28-100 6-79 (298)
79 KOG1456|consensus 98.8 8.8E-08 1.9E-12 95.3 14.2 118 28-154 27-182 (494)
80 KOG4454|consensus 98.8 2.6E-09 5.7E-14 99.4 2.2 120 30-150 7-144 (267)
81 KOG0110|consensus 98.8 3E-08 6.5E-13 105.6 10.4 124 28-156 381-585 (725)
82 KOG0130|consensus 98.7 1.7E-08 3.7E-13 87.5 5.9 71 30-100 70-141 (170)
83 smart00361 RRM_1 RNA recogniti 98.7 3E-08 6.4E-13 77.7 6.7 56 46-101 2-65 (70)
84 PLN03134 glycine-rich RNA-bind 98.7 2.4E-08 5.2E-13 89.5 6.2 63 94-156 34-101 (144)
85 PF00076 RRM_1: RNA recognitio 98.7 3.7E-08 8.1E-13 75.7 6.0 57 100-156 8-64 (70)
86 KOG4208|consensus 98.7 5.1E-08 1.1E-12 90.2 7.1 76 25-100 42-119 (214)
87 KOG0149|consensus 98.7 2.5E-08 5.4E-13 94.0 5.1 60 96-155 14-78 (247)
88 KOG0122|consensus 98.6 9.5E-08 2.1E-12 90.5 6.3 56 101-156 200-256 (270)
89 smart00361 RRM_1 RNA recogniti 98.5 1.2E-07 2.6E-12 74.2 5.4 53 104-156 2-62 (70)
90 KOG0117|consensus 98.5 1E-07 2.2E-12 96.9 5.8 63 31-100 258-320 (506)
91 KOG0146|consensus 98.5 2E-07 4.3E-12 89.2 6.3 73 26-98 279-352 (371)
92 KOG0128|consensus 98.4 2.1E-08 4.5E-13 108.6 -2.1 126 31-156 666-802 (881)
93 KOG0129|consensus 98.4 1.3E-06 2.9E-11 90.5 11.0 121 30-151 257-433 (520)
94 PF13893 RRM_5: RNA recognitio 98.4 4.7E-07 1E-11 67.4 5.5 49 49-101 1-49 (56)
95 KOG0415|consensus 98.4 3.1E-07 6.7E-12 90.9 5.6 72 29-100 236-308 (479)
96 KOG0131|consensus 98.4 2.9E-07 6.4E-12 83.7 4.7 72 29-100 93-166 (203)
97 PF14259 RRM_6: RNA recognitio 98.4 6.9E-07 1.5E-11 69.2 6.0 56 101-156 9-64 (70)
98 KOG1190|consensus 98.4 3.5E-06 7.7E-11 85.0 11.9 161 31-213 149-403 (492)
99 KOG0132|consensus 98.3 6.5E-07 1.4E-11 96.3 6.0 65 31-100 420-484 (894)
100 smart00360 RRM RNA recognition 98.3 1.6E-06 3.4E-11 65.3 6.6 57 100-156 6-63 (71)
101 KOG4205|consensus 98.3 1E-06 2.2E-11 88.1 6.3 153 94-279 6-174 (311)
102 PF13893 RRM_5: RNA recognitio 98.3 1.3E-06 2.7E-11 65.1 5.2 46 107-156 1-46 (56)
103 KOG0109|consensus 98.2 1.1E-06 2.3E-11 85.3 5.0 77 17-100 63-139 (346)
104 KOG4207|consensus 98.2 1.1E-06 2.4E-11 81.4 4.4 61 101-161 24-85 (256)
105 KOG0125|consensus 98.2 1.1E-06 2.3E-11 86.5 4.5 55 101-156 107-161 (376)
106 PRK01250 inorganic pyrophospha 98.2 1.5E-06 3.3E-11 80.1 5.0 50 387-439 2-52 (176)
107 KOG1365|consensus 98.2 3.8E-06 8.2E-11 84.1 7.4 123 32-154 161-347 (508)
108 smart00362 RRM_2 RNA recogniti 98.2 4.7E-06 1E-10 63.0 6.3 55 101-156 10-64 (72)
109 KOG0226|consensus 98.1 3.3E-06 7.2E-11 80.5 5.7 71 30-100 188-259 (290)
110 PLN03120 nucleic acid binding 98.1 4.2E-06 9.2E-11 81.2 6.3 53 101-156 15-67 (260)
111 KOG4661|consensus 98.1 4.4E-06 9.5E-11 87.1 6.5 71 30-100 403-474 (940)
112 KOG0533|consensus 98.1 6.8E-06 1.5E-10 79.4 7.3 73 29-101 80-152 (243)
113 KOG4211|consensus 98.1 1.7E-05 3.8E-10 81.9 9.9 120 31-151 102-341 (510)
114 KOG0153|consensus 98.1 6.7E-06 1.5E-10 81.6 6.3 65 26-95 222-286 (377)
115 KOG0107|consensus 98.0 6.2E-06 1.3E-10 74.8 4.9 62 93-158 9-74 (195)
116 KOG0113|consensus 98.0 8.3E-06 1.8E-10 79.5 5.7 55 101-155 112-167 (335)
117 cd00590 RRM RRM (RNA recogniti 98.0 1.8E-05 4E-10 60.0 6.4 56 101-156 10-65 (74)
118 PLN03121 nucleic acid binding 98.0 1.3E-05 2.8E-10 76.8 6.2 53 101-156 16-68 (243)
119 PLN03213 repressor of silencin 98.0 9.4E-06 2E-10 83.6 5.6 62 96-160 12-79 (759)
120 KOG1190|consensus 98.0 4.5E-05 9.8E-10 77.2 10.3 115 32-153 297-474 (492)
121 KOG4208|consensus 98.0 8.5E-06 1.8E-10 75.7 4.7 62 102-163 61-124 (214)
122 KOG0120|consensus 97.9 1.5E-05 3.2E-10 83.9 6.8 121 29-155 172-355 (500)
123 KOG0151|consensus 97.9 1.4E-05 3E-10 85.5 6.1 72 29-100 171-246 (877)
124 KOG0226|consensus 97.9 6E-06 1.3E-10 78.8 2.5 142 31-172 95-274 (290)
125 KOG0126|consensus 97.8 1.6E-06 3.6E-11 78.9 -2.1 56 101-156 46-102 (219)
126 KOG0116|consensus 97.8 2.3E-05 4.9E-10 81.4 6.0 63 31-93 287-350 (419)
127 PF04059 RRM_2: RNA recognitio 97.8 8.2E-05 1.8E-09 62.1 8.1 69 32-100 1-72 (97)
128 KOG4210|consensus 97.8 1.5E-05 3.2E-10 79.4 4.1 121 30-150 86-246 (285)
129 KOG4212|consensus 97.8 2.5E-05 5.5E-10 79.5 5.8 69 29-101 533-601 (608)
130 COG0724 RNA-binding proteins ( 97.8 3.6E-05 7.7E-10 73.2 6.3 62 95-156 116-182 (306)
131 KOG0121|consensus 97.8 4.3E-05 9.3E-10 66.1 6.0 73 82-155 25-102 (153)
132 COG0221 Ppa Inorganic pyrophos 97.8 2.5E-05 5.4E-10 71.6 4.2 51 386-440 1-51 (171)
133 KOG4660|consensus 97.7 3.1E-05 6.7E-10 81.2 4.5 71 26-100 69-139 (549)
134 KOG0111|consensus 97.7 1.9E-05 4.1E-10 73.9 2.3 64 95-158 11-79 (298)
135 KOG0130|consensus 97.7 5.1E-05 1.1E-09 66.1 4.3 57 101-157 83-140 (170)
136 KOG0112|consensus 97.6 3.8E-05 8.3E-10 84.2 3.9 124 28-156 368-516 (975)
137 KOG4209|consensus 97.6 8.2E-05 1.8E-09 71.8 5.3 75 28-103 97-172 (231)
138 KOG0108|consensus 97.6 0.0001 2.2E-09 77.1 5.8 62 95-156 19-85 (435)
139 KOG1456|consensus 97.5 0.001 2.3E-08 66.8 12.4 123 28-155 283-471 (494)
140 KOG0415|consensus 97.3 0.00017 3.7E-09 71.9 3.6 54 102-155 251-305 (479)
141 KOG0114|consensus 97.2 0.00058 1.3E-08 57.1 5.3 53 101-155 29-81 (124)
142 KOG0132|consensus 97.1 0.00051 1.1E-08 74.6 4.2 53 95-152 422-478 (894)
143 cd00412 pyrophosphatase Inorga 97.0 0.00049 1.1E-08 62.3 3.1 24 400-423 1-24 (155)
144 COG5175 MOT2 Transcriptional r 97.0 0.0014 3.1E-08 65.0 6.2 103 28-137 110-223 (480)
145 KOG2193|consensus 97.0 0.0003 6.5E-09 71.6 1.5 118 32-156 1-144 (584)
146 KOG4206|consensus 97.0 0.0015 3.2E-08 61.8 5.9 57 102-160 21-81 (221)
147 KOG0105|consensus 96.9 0.00094 2E-08 61.3 4.2 55 100-156 16-70 (241)
148 KOG1457|consensus 96.9 0.0008 1.7E-08 63.4 3.8 69 28-99 206-274 (284)
149 KOG0153|consensus 96.8 0.0011 2.4E-08 66.2 4.2 51 101-156 239-289 (377)
150 PF08777 RRM_3: RNA binding mo 96.7 0.0034 7.4E-08 53.2 5.4 57 33-94 2-58 (105)
151 KOG4661|consensus 96.6 0.0018 3.9E-08 68.1 4.3 54 102-155 417-471 (940)
152 KOG1365|consensus 96.4 0.02 4.3E-07 58.0 9.8 120 32-151 60-226 (508)
153 KOG3152|consensus 96.2 0.0069 1.5E-07 58.3 5.0 70 31-100 73-155 (278)
154 PF11608 Limkain-b1: Limkain b 96.2 0.013 2.8E-07 47.4 5.7 59 33-100 3-66 (90)
155 KOG1995|consensus 96.1 0.0092 2E-07 60.0 5.7 82 28-109 62-152 (351)
156 KOG4676|consensus 96.1 0.0044 9.4E-08 62.8 3.3 115 33-151 8-209 (479)
157 KOG2314|consensus 96.1 0.0072 1.6E-07 63.9 4.8 71 30-100 56-132 (698)
158 PF14605 Nup35_RRM_2: Nup53/35 95.9 0.016 3.4E-07 42.9 4.6 52 33-90 2-53 (53)
159 KOG1548|consensus 95.8 0.03 6.5E-07 56.2 7.8 71 28-101 261-342 (382)
160 KOG4210|consensus 95.8 0.0072 1.6E-07 60.3 3.3 64 29-92 181-246 (285)
161 KOG0106|consensus 95.4 0.011 2.3E-07 56.4 2.9 66 29-101 96-161 (216)
162 KOG0533|consensus 95.3 0.023 4.9E-07 55.2 4.8 53 101-153 94-146 (243)
163 KOG4849|consensus 95.2 0.013 2.9E-07 58.6 3.0 69 32-100 80-151 (498)
164 KOG0129|consensus 95.2 0.05 1.1E-06 57.2 7.0 67 26-92 364-432 (520)
165 KOG0115|consensus 95.2 0.025 5.3E-07 54.7 4.4 71 30-100 29-99 (275)
166 KOG2314|consensus 95.1 0.026 5.7E-07 59.8 4.6 54 105-158 79-132 (698)
167 KOG1855|consensus 95.1 0.024 5.3E-07 58.2 4.3 70 25-94 224-307 (484)
168 KOG0116|consensus 94.9 0.032 6.9E-07 58.3 4.6 51 101-151 299-350 (419)
169 PF08777 RRM_3: RNA binding mo 94.8 0.037 8.1E-07 46.9 4.2 47 101-152 12-58 (105)
170 KOG4454|consensus 94.7 0.059 1.3E-06 51.0 5.5 59 101-160 20-78 (267)
171 KOG4307|consensus 94.6 0.083 1.8E-06 57.4 6.9 72 28-99 863-935 (944)
172 PF08675 RNA_bind: RNA binding 94.3 0.19 4E-06 40.7 6.6 54 33-94 10-63 (87)
173 KOG4307|consensus 94.2 0.036 7.8E-07 60.0 3.4 120 31-151 310-496 (944)
174 PF14605 Nup35_RRM_2: Nup53/35 94.1 0.07 1.5E-06 39.4 3.6 40 104-148 14-53 (53)
175 KOG4209|consensus 93.9 0.061 1.3E-06 52.0 3.9 54 102-156 113-167 (231)
176 KOG0128|consensus 93.8 0.022 4.8E-07 62.9 0.8 74 25-98 729-802 (881)
177 PF04059 RRM_2: RNA recognitio 93.7 0.27 5.8E-06 41.1 6.9 56 101-156 12-70 (97)
178 KOG2068|consensus 93.6 0.043 9.2E-07 55.0 2.4 73 30-102 75-154 (327)
179 PF05172 Nup35_RRM: Nup53/35/4 93.6 0.14 3E-06 43.1 5.1 69 31-101 5-81 (100)
180 KOG4660|consensus 93.4 0.048 1E-06 57.8 2.4 59 100-162 85-143 (549)
181 KOG0151|consensus 93.4 0.13 2.7E-06 56.2 5.5 74 101-174 185-266 (877)
182 PF07576 BRAP2: BRCA1-associat 93.1 0.85 1.8E-05 39.0 9.2 68 31-99 12-80 (110)
183 PF15023 DUF4523: Protein of u 92.5 0.38 8.3E-06 42.8 6.4 65 25-95 79-147 (166)
184 KOG2202|consensus 92.3 0.072 1.6E-06 51.5 1.8 56 105-160 83-139 (260)
185 KOG0115|consensus 91.8 0.39 8.3E-06 46.6 6.1 63 101-163 42-104 (275)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 90.2 0.4 8.7E-06 44.4 4.4 71 30-100 5-82 (176)
187 PF10309 DUF2414: Protein of u 89.9 1.4 3E-05 33.8 6.4 55 32-93 5-62 (62)
188 KOG1996|consensus 88.3 0.88 1.9E-05 45.0 5.4 55 103-157 299-355 (378)
189 KOG1996|consensus 87.6 1.2 2.6E-05 44.1 5.8 56 47-102 301-358 (378)
190 KOG2202|consensus 86.8 0.27 5.7E-06 47.7 0.9 55 47-101 83-138 (260)
191 KOG0112|consensus 86.7 0.76 1.7E-05 51.6 4.4 68 28-100 451-518 (975)
192 PF05172 Nup35_RRM: Nup53/35/4 84.5 1.8 3.8E-05 36.4 4.6 53 103-156 18-78 (100)
193 KOG0804|consensus 81.0 5.2 0.00011 41.9 7.3 69 31-100 73-142 (493)
194 COG5175 MOT2 Transcriptional r 80.3 2.3 5E-05 42.8 4.4 49 108-156 138-190 (480)
195 KOG2416|consensus 77.2 1.6 3.4E-05 47.1 2.3 68 27-99 439-507 (718)
196 KOG1855|consensus 74.5 2.2 4.9E-05 44.3 2.5 51 103-153 244-308 (484)
197 PF11608 Limkain-b1: Limkain b 69.0 9.3 0.0002 31.2 4.4 45 105-158 21-66 (90)
198 PF08952 DUF1866: Domain of un 68.1 13 0.00027 33.5 5.5 65 28-100 23-96 (146)
199 PF11767 SET_assoc: Histone ly 62.8 27 0.0006 27.0 5.8 50 42-99 10-59 (66)
200 PF07576 BRAP2: BRCA1-associat 61.3 27 0.00058 29.8 6.1 54 102-156 25-79 (110)
201 KOG1995|consensus 60.7 9.7 0.00021 38.8 3.8 56 101-156 77-141 (351)
202 PF15023 DUF4523: Protein of u 58.9 17 0.00036 32.7 4.5 42 106-153 106-147 (166)
203 PF04847 Calcipressin: Calcipr 58.1 16 0.00035 34.1 4.6 51 45-100 8-60 (184)
204 KOG4285|consensus 57.7 13 0.00028 37.2 3.9 61 33-100 198-258 (350)
205 KOG4574|consensus 56.4 5.2 0.00011 45.0 1.2 61 33-98 299-359 (1007)
206 KOG2591|consensus 56.4 33 0.00072 37.1 6.9 59 29-93 172-232 (684)
207 PF11767 SET_assoc: Histone ly 54.9 34 0.00074 26.5 5.1 49 101-157 11-59 (66)
208 KOG3152|consensus 53.0 9.1 0.0002 37.4 2.0 65 101-169 85-163 (278)
209 PF10309 DUF2414: Protein of u 52.7 39 0.00084 25.9 5.1 44 101-151 15-62 (62)
210 PF08675 RNA_bind: RNA binding 50.5 42 0.00091 27.4 5.1 46 101-153 19-64 (87)
211 KOG4285|consensus 50.1 16 0.00035 36.6 3.3 48 103-156 209-256 (350)
212 PF04847 Calcipressin: Calcipr 48.1 32 0.0007 32.1 4.9 45 103-152 8-52 (184)
213 PF08437 Glyco_transf_8C: Glyc 45.0 10 0.00022 28.5 0.8 13 384-396 12-24 (57)
214 KOG2253|consensus 45.0 16 0.00035 40.1 2.7 66 27-100 35-100 (668)
215 KOG4676|consensus 44.0 5.4 0.00012 41.1 -1.0 58 32-92 151-208 (479)
216 PF08952 DUF1866: Domain of un 43.6 43 0.00093 30.1 4.7 39 105-150 51-89 (146)
217 KOG4483|consensus 43.5 60 0.0013 33.9 6.2 55 32-92 391-446 (528)
218 KOG4849|consensus 43.4 41 0.00089 34.4 5.0 54 102-155 92-148 (498)
219 PF10567 Nab6_mRNP_bdg: RNA-re 40.2 39 0.00084 33.8 4.2 58 31-88 14-79 (309)
220 PF15513 DUF4651: Domain of un 38.9 63 0.0014 24.8 4.2 18 47-64 9-26 (62)
221 KOG2068|consensus 34.3 25 0.00053 35.7 1.9 50 109-158 99-152 (327)
222 KOG2416|consensus 30.4 25 0.00054 38.3 1.3 51 101-156 455-506 (718)
223 cd08686 C2_ABR C2 domain in th 30.3 44 0.00095 28.9 2.5 35 409-444 44-92 (118)
224 KOG4574|consensus 26.1 38 0.00082 38.5 1.7 52 101-157 309-360 (1007)
225 KOG2891|consensus 25.2 56 0.0012 32.4 2.5 35 32-66 149-195 (445)
226 KOG4410|consensus 23.4 1.3E+02 0.0027 30.2 4.6 48 32-84 330-378 (396)
227 PF07177 Neuralized: Neuralize 23.2 81 0.0018 24.5 2.7 21 258-278 30-50 (69)
228 smart00588 NEUZ domain in neur 22.0 1.8E+02 0.004 25.1 5.0 52 256-314 29-80 (123)
229 KOG0804|consensus 21.2 1.7E+02 0.0036 31.2 5.2 57 101-158 85-142 (493)
No 1
>KOG1626|consensus
Probab=100.00 E-value=1.1e-70 Score=512.76 Aligned_cols=223 Identities=55% Similarity=0.908 Sum_probs=215.4
Q ss_pred HHHHhcCCCcccCCCCCc-ccccccCCccccccccccceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCC
Q psy300 146 KAILKSNKKPYKGSENGL-ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPH 224 (451)
Q Consensus 146 ~Ai~~ln~riy~~~~~G~-iSp~hdiPl~v~~~p~~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~ 224 (451)
.+.+++++++|+...+|+ +|+|||+|+... ....++|++|||||+++|||+++++.+|||+||.++|++||++++||+
T Consensus 9 g~~~s~~~rvy~~~~~~~~iS~fhdipl~a~-~~~~~nmvvEiPrwtnak~EIs~k~~~~pikqD~KkGklR~v~n~fp~ 87 (279)
T KOG1626|consen 9 GKKYSLDYRVYFPKLNGRIISPFHDIPLAAH-PWHDLNMVVEIPRWTNAKMEISKKEPFNPIKQDKKKGKLRFVRNLFPY 87 (279)
T ss_pred cccCCccceeeecCCCCccccccccCccccC-ccccEeecccccceeeeEEEEeccCCCCcceeeccCCceEEEEecccc
Confidence 456789999999999997 999999999986 468899999999999999999999999999999999999999999999
Q ss_pred CCCccccCCCCccCCCCCCCCcCCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecCCcccc
Q psy300 225 HGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAA 304 (451)
Q Consensus 225 ~~yp~nYG~iP~T~~~p~~~~~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~d~~~~ 304 (451)
.+||||||||||||+||++.++.|++.|||||||||+||+.+..+|++++||+||+|+|||+||+|||||||.++||+++
T Consensus 88 ~gYiwNYGalPqTwedP~~~~~~t~~~gDnDPiDV~eIg~~~~~~G~vl~vKvLG~malIDeGE~DwKiIAIdvnDP~A~ 167 (279)
T KOG1626|consen 88 KGYIWNYGALPQTWEDPNHVDPETKAKGDNDPIDVLEIGQEPVLPGCVLQVKVLGLMALIDEGETDWKIIAIDVNDPLAS 167 (279)
T ss_pred cccccccccCcccccCCCcccccccccCCCCcceeeEecccccccccEEEEEeeeeeecccCCCccceEEEEECCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccCcchHHHHHHHhhhccCCCCCcccccCCCcchhh---hhhhHHHHHHHHHHhhcccc
Q psy300 305 KLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVLNTRVEGES---SQGFIPGCRGRTEQVVSSRL 369 (451)
Q Consensus 305 ~i~~~~d~~~~~p~~~~~i~~~F~~yk~~~gk~~~~~~~~~~~~~---~~~~i~~~~~~~~~~i~~~~ 369 (451)
.+|+|+||++++||+|++|++|||.||.||||+.|.|+|+|++.. |.++|++||+.|+.+|.+.+
T Consensus 168 ~~ndi~DV~~~~Pg~L~~tr~wFr~YKiPdGKpeN~faf~~~f~n~~~A~~iIk~t~d~w~~li~~~~ 235 (279)
T KOG1626|consen 168 EYNDIEDVEKLFPGLLEATRRWFRDYKIPDGKPENKFAFVGDFLNKKFALDIIKETHDLWAALIKGKL 235 (279)
T ss_pred hhccHHHHHHhCcchHHHHHHHHHHcCCCCCCCccchhhcccccChHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999998875 58999999999999999876
No 2
>PLN02707 Soluble inorganic pyrophosphatase
Probab=100.00 E-value=5.4e-67 Score=502.59 Aligned_cols=217 Identities=47% Similarity=0.836 Sum_probs=204.1
Q ss_pred HHHHhcCCCcccCCCCCc-ccccccCCccccccccccceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCC
Q psy300 146 KAILKSNKKPYKGSENGL-ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPH 224 (451)
Q Consensus 146 ~Ai~~ln~riy~~~~~G~-iSp~hdiPl~v~~~p~~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~ 224 (451)
.+..++++|+||...+|. +|+|||+|++ ..+..+|++||||+||++|||+++++++|||+||.++|++|+ ||+
T Consensus 38 G~~~t~~~r~~~~~~~g~~~spwHdIpl~--~~~~~vn~VVEIPrgs~~KyEidk~~~~npi~qD~~~g~lr~----yP~ 111 (267)
T PLN02707 38 GEAETLDYRVFFSDGSGKKVSPWHDIPLH--AGDGTFNFVVEIPKETSAKMEVATDEPFTPIKQDTKKGKLRD----YPY 111 (267)
T ss_pred cCCCCcceEEEEECCCCCccCchhcCCCC--CCCCEEEEEEEECCCCceeEEECccCCCCCEEEeeecCceEE----CCC
Confidence 456788999999998898 9999999998 357899999999999999999999999999999999999996 677
Q ss_pred CCCccccCCCCccCCCCCCCCcCCC-CCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecCCccc
Q psy300 225 HGYIWNYGALPQTWENPDETDAHTG-QKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNA 303 (451)
Q Consensus 225 ~~yp~nYG~iP~T~~~p~~~~~~~~-~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~d~~~ 303 (451)
+||||||||||||+||++.++.++ ++|||||||||||++.++.||+|++|||||+|+|+|+||+|||||||+++||+|
T Consensus 112 -~~~~NYGfIPqTwedp~~~~~~~~~l~gDgDPLDVlvi~~~~~~pG~Vv~vR~IGvL~miDeGE~D~KIIaV~~~Dp~~ 190 (267)
T PLN02707 112 -NINWNYGLLPQTWEDPTHANPEVEGAFGDNDPVDVVEIGERAAKIGEVLKVKPLGVLAMIDEGELDWKVVAISADDPKA 190 (267)
T ss_pred -cCccccccccccccCcccccccccccCCCCCccEEEEecCCCcCCccEEEEEEeEEEEEEeCCCCCCEEEEEECCCCcc
Confidence 999999999999999999998876 999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccccccCcchHHHHHHHhhhccCCCCCcccccC----CCcchhhhhhhHHHHHHHHHHhhccccC
Q psy300 304 AKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVLN----TRVEGESSQGFIPGCRGRTEQVVSSRLE 370 (451)
Q Consensus 304 ~~i~~~~d~~~~~p~~~~~i~~~F~~yk~~~gk~~~~~~----~~~~~~~~~~~i~~~~~~~~~~i~~~~~ 370 (451)
++|+|++||++++||++++|+|||++||.++||++|+|+ |.|+ +.|+++|++||++|+++++++..
T Consensus 191 ~~i~di~Dv~~~~pg~l~~I~~fF~~YK~~eGK~~n~~~~~~~~~~~-~~A~~vI~e~~~~y~~l~~~~~~ 260 (267)
T PLN02707 191 SLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGKPANKFGLDNKPMDK-DYALKVIEETNEAWAKLVKRSIP 260 (267)
T ss_pred cccCChhHhhhhhhhHHHHHHHHHHHhcCCCCCceeeccccCCcCCH-HHHHHHHHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999986 5654 56799999999999999998763
No 3
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=4.8e-56 Score=414.39 Aligned_cols=185 Identities=23% Similarity=0.346 Sum_probs=169.7
Q ss_pred ccccccCCccccccccccceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCC
Q psy300 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDE 243 (451)
Q Consensus 164 iSp~hdiPl~v~~~p~~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~ 243 (451)
+|+||++|++.+ .+..+++++|||+||++|||+++ ++|.+++++.++.++.||||||||||||+||++
T Consensus 9 ~spwhdi~~~~~-~~~~vn~VIEIP~gs~~KyE~dk-----------~~g~~~ldr~l~~~~~yP~nYGfIPqT~~dp~~ 76 (205)
T PRK00642 9 AHPWHGLSLGPD-APESVCCYIEITPFDTVKYELDK-----------ATGYLKVDRPQKFSNFCPALYGFIPRTYCGDLS 76 (205)
T ss_pred cCccccCCCCCC-CCCEEEEEEEECCCCCeeEEEec-----------CCCceEEeeecccCCcCCcccCcCcccccCccc
Confidence 799999999753 47889999999999999999986 568888999999999999999999999999987
Q ss_pred CCcC------CCCCCCCCcceEEEeccccCCCccE-EEEEEeeeeeeecCCCccceEEEEecCCccccCCCCcccccccC
Q psy300 244 TDAH------TGQKGDGDPIDVLEIGERIAKRGEI-IQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHF 316 (451)
Q Consensus 244 ~~~~------~~~~~D~DPlD~~~~~~~~~~~G~v-~~vr~lG~l~~~d~~e~D~Kii~v~~~d~~~~~i~~~~d~~~~~ 316 (451)
.+.. ++++|||||||||||++.++.||++ ++|||||+|+|+|+||+|||||||+++||+|++|++++||++
T Consensus 77 ~~~~~~~~~~~~~~gDgDPLDvlvl~~~~~~~G~v~i~~R~iG~l~miD~ge~D~KIiaV~~~Dp~~~~i~dl~Dl~~-- 154 (205)
T PRK00642 77 GKLSGEQSGREDIKGDGDPLDICVLTEKNITHGNILLQARPIGGLRMIDGGEADDKIIAVLEDDLVYGEIKDISECPG-- 154 (205)
T ss_pred ccccccccccccCCCCCCceEEEEecCCCcCCCceEEEEEEeEEEEEecCCCccceEEEEECCCCccccCCChHHCCH--
Confidence 7643 5788999999999999999999996 799999999999999999999999999999999999999986
Q ss_pred cchHHHHHHHhhhccCCCCCc---ccccCCCcchhhhhhhHHHHHHHHHHh
Q psy300 317 PGYLKATNEWFKIYKIPDGKP---ENVLNTRVEGESSQGFIPGCRGRTEQV 364 (451)
Q Consensus 317 p~~~~~i~~~F~~yk~~~gk~---~~~~~~~~~~~~~~~~i~~~~~~~~~~ 364 (451)
+++++|+|||++||.++||+ +.+.+|.|. ++|+++|++||++|+++
T Consensus 155 -~~l~~I~~fF~~YK~legk~~k~~~~~g~~~~-~~A~~vI~~~~~~y~~~ 203 (205)
T PRK00642 155 -TLLDRLQHYFLTYKATPGELIKGVEIVGIYGK-EEAQKVIQLAHEDYANK 203 (205)
T ss_pred -HHHHHHHHHHHHHcCcccCCCCeEEECCCcCH-HHHHHHHHHHHHHHHHh
Confidence 59999999999999999755 678899974 77899999999999984
No 4
>PLN02373 soluble inorganic pyrophosphatase
Probab=100.00 E-value=3e-54 Score=396.34 Aligned_cols=176 Identities=27% Similarity=0.427 Sum_probs=162.7
Q ss_pred ccccccCCccccccccccceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCC
Q psy300 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDE 243 (451)
Q Consensus 164 iSp~hdiPl~v~~~p~~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~ 243 (451)
+|+||++|++.. .+..+++++|||+||++|||++++ +|.++.++.++.++.||||||||||||
T Consensus 9 ~~~whdi~~~~~-~~~~v~vVIEIP~gs~~KyE~dk~-----------~g~i~~Dr~l~~~~~yP~nYGfIP~T~----- 71 (188)
T PLN02373 9 AHPWHDLEIGPG-APAIFNCVVEITKGSKVKYELDKK-----------TGLIKVDRVLYSSVVYPHNYGFIPRTL----- 71 (188)
T ss_pred CCccccCCCCCC-CCCEEEEEEEECCCCCeeEEEccC-----------CCCEEEeeecccCCcCCcccccccccc-----
Confidence 789999999754 578899999999999999999874 455556667778899999999999999
Q ss_pred CCcCCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecCCccccCCCCcccccccCcchHHHH
Q psy300 244 TDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKAT 323 (451)
Q Consensus 244 ~~~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~d~~~~~i~~~~d~~~~~p~~~~~i 323 (451)
+|||||||+|||++.++.||++++|||||+|+|+|+||+|||||||+++||+|++|++++||++ +++++|
T Consensus 72 -------~~DgDPLDvlvl~~~~~~~G~vi~~R~iG~l~m~D~ge~D~KiIaV~~~dp~~~~i~dl~Dl~~---~~l~~I 141 (188)
T PLN02373 72 -------CEDNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKELPP---HRLAEI 141 (188)
T ss_pred -------cCCCCccEEEEecCCCCCCceEEEEEEEEEEEEeeCCCCCCeEEEEECCCcccccCCChHHCCH---HHHHHH
Confidence 7999999999999999999999999999999999999999999999999999999999999975 599999
Q ss_pred HHHhhhccCCCCCcccccCCCcchhhhhhhHHHHHHHHHHhhcc
Q psy300 324 NEWFKIYKIPDGKPENVLNTRVEGESSQGFIPGCRGRTEQVVSS 367 (451)
Q Consensus 324 ~~~F~~yk~~~gk~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~~ 367 (451)
+|||++||.++||++++.+|.|. ++|+++|++||++|++++..
T Consensus 142 ~~fF~~YK~legK~v~v~g~~~~-~~A~~~I~~~~~~y~~~~~~ 184 (188)
T PLN02373 142 RRFFEDYKKNENKEVAVNDFLPA-EAAIEAIQYSMDLYAEYIVE 184 (188)
T ss_pred HHHHHHhcccCCCeEEeCCccCH-HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999995 78899999999999987654
No 5
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=1.6e-52 Score=382.02 Aligned_cols=170 Identities=28% Similarity=0.389 Sum_probs=158.9
Q ss_pred ccccCCccccccccccceeeccCCCCc-cccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCCC
Q psy300 166 PFHDIPLYSNVKDKIFNMVVEIPRWTN-AKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDET 244 (451)
Q Consensus 166 p~hdiPl~v~~~p~~vn~vvEIPrgS~-~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~~ 244 (451)
.||++|.+. ..+..+++++|||+||+ +|||+++ ++|.++++|.++.++.||||||||||||
T Consensus 2 ~~~~l~~~~-~~~~~v~vvvEIPkgs~~~KyE~d~-----------~~g~~~~dR~l~~~~~yP~nYGfIP~T~------ 63 (176)
T PRK01250 2 SLNKIPAGK-DLPEDINVIIEIPANSDPIKYEVDK-----------ESGALFVDRFLYTAMFYPCNYGFIPHTL------ 63 (176)
T ss_pred ChhhCCCCC-CCCCEEEEEEEeCCCCCceeEEEec-----------CCCCEEEeeccCCCCcCCcCcccCCCcc------
Confidence 478888854 56899999999999999 8999986 5788899999999999999999999999
Q ss_pred CcCCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecC--CccccCCCCcccccccCcchHHH
Q psy300 245 DAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKA 322 (451)
Q Consensus 245 ~~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~--d~~~~~i~~~~d~~~~~p~~~~~ 322 (451)
+|||||||+|||++.++.||++++|||||+|+|+|+||+|||||||+++ ||++++|++++||++ +++++
T Consensus 64 ------~~DgDPLDvlvl~~~~~~~G~vv~~r~iG~l~m~D~ge~D~KiiaV~~~~~dp~~~~i~dl~dl~~---~~l~e 134 (176)
T PRK01250 64 ------SLDGDPVDVLVVTPYPLVPGSVIRCRPVGVLKMEDESGEDAKIIAVPHDKLSPEYDHIKDVNDLPE---LLKAQ 134 (176)
T ss_pred ------cCCCCceEEEEecCCCCCCceEEEEEEEEEEEeecCCCCCCeEEEEECCCCCccccccCChHHCCH---HHHHH
Confidence 6999999999999999999999999999999999999999999999998 799999999999986 49999
Q ss_pred HHHHhhhccCCC-CCcccccCCCcchhhhhhhHHHHHHHHHH
Q psy300 323 TNEWFKIYKIPD-GKPENVLNTRVEGESSQGFIPGCRGRTEQ 363 (451)
Q Consensus 323 i~~~F~~yk~~~-gk~~~~~~~~~~~~~~~~~i~~~~~~~~~ 363 (451)
|+|||++||.++ ||++++.+|.|+ ++|+++|++||++|++
T Consensus 135 I~~fF~~YK~le~gk~~~v~g~~~~-~~A~~~I~~~~~~y~~ 175 (176)
T PRK01250 135 IKHFFEHYKDLEKGKWVKVEGWGGA-EEAKAEIVEAIERAKK 175 (176)
T ss_pred HHHHHHHhcCCCCCCCEEecCccCH-HHHHHHHHHHHHHHhc
Confidence 999999999997 999999999985 7889999999999975
No 6
>PRK02230 inorganic pyrophosphatase; Provisional
Probab=100.00 E-value=1.9e-50 Score=369.07 Aligned_cols=159 Identities=26% Similarity=0.375 Sum_probs=151.3
Q ss_pred cccceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCCCCcCCCCCCCCCcce
Q psy300 179 KIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPID 258 (451)
Q Consensus 179 ~~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~~~~~~~~~~D~DPlD 258 (451)
..++++||||+||++|||+++ ++|.+++++.+++++.||+||||||||| +|||||||
T Consensus 3 ~~vnvvIEIP~gs~~KyE~d~-----------~~g~i~~DR~l~~~~~YP~NYGfIP~Tl------------~~DGDPLD 59 (184)
T PRK02230 3 KIIEVTIEIPKGSNIKYEYDR-----------KTNKIVVDRILRGDFVYPANYGFIKEAL------------DWDGDELD 59 (184)
T ss_pred cEEEEEEEECCCCCeeEEEec-----------CCCCEEEEeecCCCCCCCcCcccCCCcc------------CCCCCceE
Confidence 458999999999999999975 6899999999999999999999999999 69999999
Q ss_pred EEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecCCccccCCCCcccccccCcchHHHHHHHhhhccCCCCCcc
Q psy300 259 VLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPE 338 (451)
Q Consensus 259 ~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~d~~~~~i~~~~d~~~~~p~~~~~i~~~F~~yk~~~gk~~ 338 (451)
||||++.++.||++++|||||+|+|+|+||.|||||||+.+||.+++|++++||+++ ++++|+|||++||.++||++
T Consensus 60 vlvl~~~~~~pG~vi~~r~IGvl~m~D~ge~D~KIIaV~~~dp~~~~i~di~Dlp~~---~l~~I~~fF~~YK~legk~~ 136 (184)
T PRK02230 60 VLVYSDQKFLPGTVLNARIIGAMKMIDDGETDTKLIAVHDDDYRLDHINSLKDLPQH---WLDEIEYFFSNYKNWKRKGI 136 (184)
T ss_pred EEEECCCCCCCccEEEEEEEEEEEeccCCCcCcEEEEEECCCCChhhcCChHHCCHH---HHHHHHHHHHHhcCCCCCCe
Confidence 999999999999999999999999999999999999999999999999999999976 89999999999999999987
Q ss_pred c-ccCCCcchhhhhhhHHHHHHHHHHh
Q psy300 339 N-VLNTRVEGESSQGFIPGCRGRTEQV 364 (451)
Q Consensus 339 ~-~~~~~~~~~~~~~~i~~~~~~~~~~ 364 (451)
+ +.||.|+ .+|.++|++|+++|+++
T Consensus 137 ~~v~g~~~~-~~A~~~I~~~~~~y~~~ 162 (184)
T PRK02230 137 TKVKGFEDE-KWALKEYKECVELMKKY 162 (184)
T ss_pred EEeCCccCH-HHHHHHHHHHHHHHHHc
Confidence 5 8999985 78899999999999986
No 7
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=100.00 E-value=1.3e-48 Score=349.76 Aligned_cols=153 Identities=40% Similarity=0.716 Sum_probs=141.4
Q ss_pred ccceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCCCCcCCCCCCCCCcceE
Q psy300 180 IFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDV 259 (451)
Q Consensus 180 ~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~~~~~~~~~~D~DPlD~ 259 (451)
.+++++|||+||++|||++++ +|.++.+|.++.++.||+||||||||| ++||||||+
T Consensus 2 ~v~vvIEIP~gs~~KyE~d~~-----------~g~i~~DR~l~~~~~yP~nYGfiP~T~------------~~DgDPlDv 58 (155)
T cd00412 2 VVNVVIEIPKGSNAKYEIDKE-----------TGPIKVDRFLYSSMGYPWNYGFIPQTL------------EDDGDPLDV 58 (155)
T ss_pred EEEEEEEECCCCceeEEEccC-----------CCceeeccccccCCcCcccccccCCcc------------cCCCCceEE
Confidence 478999999999999999874 455566677777899999999999999 589999999
Q ss_pred EEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecCCccccCCCCcccccccCcchHHHHHHHhhhccCCCC-Ccc
Q psy300 260 LEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDG-KPE 338 (451)
Q Consensus 260 ~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~d~~~~~i~~~~d~~~~~p~~~~~i~~~F~~yk~~~g-k~~ 338 (451)
|||++.++.||++++||+||+|+|+|+||+|||||||+.+||+|++|++++||++ +++++|+|||++||.++| |++
T Consensus 59 lvl~~~~~~~G~~~~~r~iG~l~m~D~ge~D~KiiaV~~~dp~~~~i~~l~Dl~~---~~l~~I~~fF~~YK~le~~k~~ 135 (155)
T cd00412 59 LVIGEEPLFPGSVIRVRPLGVLKMIDEGETDWKVIAVPVDDPRYSHINDISDVPP---HLLDEIKHFFEHYKDLEGKKEV 135 (155)
T ss_pred EEEcCCCCCCeeEEEEEEEEEEEeccCCCccceEEEeeCCCcccccCCChHHCCH---HHHHHHHHHHHHhcccCCCCce
Confidence 9999999999999999999999999999999999999999999999999999985 599999999999999997 789
Q ss_pred cccCCCcchhhhhhhHHHHHH
Q psy300 339 NVLNTRVEGESSQGFIPGCRG 359 (451)
Q Consensus 339 ~~~~~~~~~~~~~~~i~~~~~ 359 (451)
.+.+|.|+ ++|+++|++||+
T Consensus 136 ~~~g~~~~-~~A~~~I~~~~~ 155 (155)
T cd00412 136 KVAGWKDK-EEALKIIKESIE 155 (155)
T ss_pred EECcCcCH-HHHHHHHHHHhC
Confidence 99999985 788999999984
No 8
>PF00719 Pyrophosphatase: Inorganic pyrophosphatase; InterPro: IPR008162 Inorganic pyrophosphatase (3.6.1.1 from EC) (PPase) [, ] is the enzyme responsible for the hydrolysis of pyrophosphate (PPi) which is formed principally as the product of the many biosynthetic reactions that utilise ATP. All known PPases require the presence of divalent metal cations, with magnesium conferring the highest activity. Among other residues, a lysine has been postulated to be part of or close to the active site. PPases have been sequenced from bacteria such as Escherichia coli (homohexamer), Bacillus PS3 (Thermophilic bacterium PS-3) and Thermus thermophilus, from the archaebacteria Thermoplasma acidophilum, from fungi (homodimer), from a plant, and from bovine retina. In yeast, a mitochondrial isoform of PPase has been characterised which seems to be involved in energy production and whose activity is stimulated by uncouplers of ATP synthesis. The sequences of PPases share some regions of similarities, among which is a region that contains three conserved aspartates that are involved in the binding of cations.; GO: 0000287 magnesium ion binding, 0004427 inorganic diphosphatase activity, 0006796 phosphate-containing compound metabolic process, 0005737 cytoplasm; PDB: 2UXS_A 1WCF_A 1SXV_A 3I4Q_A 2PRD_A 2IHP_B 1PYP_A 2IK7_A 2IK4_A 1E9G_A ....
Probab=100.00 E-value=1.6e-48 Score=351.19 Aligned_cols=155 Identities=34% Similarity=0.559 Sum_probs=137.2
Q ss_pred ceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCCCCcCCCCCCCCCcceEEE
Q psy300 182 NMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLE 261 (451)
Q Consensus 182 n~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~~~~~~~~~~D~DPlD~~~ 261 (451)
|+++|||+||++|||++++ +|.++.++.++.++.||+||||||||| +||||||||||
T Consensus 1 n~viEIP~gs~~KyE~d~~-----------~~~~~idr~~~~~~~yP~NYGfIP~T~------------~~DGDPLDvlv 57 (156)
T PF00719_consen 1 NVVIEIPKGSRAKYEYDKE-----------TGLNPIDRPLYSSMPYPFNYGFIPQTL------------GGDGDPLDVLV 57 (156)
T ss_dssp EEEEEE-TTSSEEEEEETT-----------TTEEEEEEE-SSSBS-SSEEEEETTEE------------BTTSSCEEEEE
T ss_pred CEEEEECCCCCeeEEECCC-----------CCCccceeccccCcCCcccccccccee------------cCCCCeeeEEE
Confidence 6899999999999999874 555566666777899999999999999 59999999999
Q ss_pred eccccCCCccEEEEEEeeeeeeecCCCccceEEEEecCCccccCCCCcccccccCcchHHHHHHHhhhccCC-CCCcccc
Q psy300 262 IGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIP-DGKPENV 340 (451)
Q Consensus 262 ~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~d~~~~~i~~~~d~~~~~p~~~~~i~~~F~~yk~~-~gk~~~~ 340 (451)
|++.++.||++++||+||+|+|+|+||+|||||||+.+||++++|++++|++ |+++++|++||++||.+ +||.+..
T Consensus 58 l~~~~~~~G~v~~~r~iG~l~m~D~ge~D~KiiaV~~~dp~~~~i~dl~dl~---~~~~~~i~~fF~~YK~l~~~k~~~~ 134 (156)
T PF00719_consen 58 LGSEPLPPGSVVRVRVIGVLKMIDDGERDDKIIAVPVDDPRYDDIKDLEDLP---PHLLDEIEHFFRNYKDLEENKWVEV 134 (156)
T ss_dssp ESSS---TTEEEEEEEEEEEEEEETTEEEEEEEEEETTCGGGTTHHSGGGSS---HHHHHHHHHHHHHTTTTSTTEEEEE
T ss_pred EecccccceeEEEEeceEEEEEeeCCCCceEEEEeccCCcccCCcCcHHHhC---hhHHHHHHHHHHHhcCcCCCCeEEe
Confidence 9999999999999999999999999999999999999999999888888886 55999999999999999 8999999
Q ss_pred cCCCcchhhhhhhHHHHHHHHHH
Q psy300 341 LNTRVEGESSQGFIPGCRGRTEQ 363 (451)
Q Consensus 341 ~~~~~~~~~~~~~i~~~~~~~~~ 363 (451)
.+|.++ +.|+++|++||++|++
T Consensus 135 ~~~~~~-~~A~~~i~~~~~~y~~ 156 (156)
T PF00719_consen 135 GGWEDA-EEALKVIKEAHERYKK 156 (156)
T ss_dssp EEEEEH-HHHHHHHHHHHHHHHH
T ss_pred CCCcCH-HHHHHHHHHHHHHhhC
Confidence 999985 7889999999999986
No 9
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=100.00 E-value=1.6e-46 Score=340.41 Aligned_cols=170 Identities=34% Similarity=0.508 Sum_probs=159.5
Q ss_pred cccccCCccccccccccceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCCC
Q psy300 165 SPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDET 244 (451)
Q Consensus 165 Sp~hdiPl~v~~~p~~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~~ 244 (451)
+.||++|...+. ..+++++|||++|+.|||+++ ++|.+..++.++.+++||+||||||+||
T Consensus 1 ~~~~~~~~~~~~--~~i~vviEIP~~s~~KyE~dk-----------~~~~~~vdR~l~~~~~YP~NYGfiP~Tl------ 61 (171)
T COG0221 1 MDLHKIPAGPDD--EDINVVIEIPKGSNIKYEVDK-----------ETGRLLVDRPLKTPMGYPVNYGFIPNTL------ 61 (171)
T ss_pred CCccccCCCCCc--ceEEEEEeccCCCccceEEee-----------ecCceeeeecCCCCCcCCccccccCCcc------
Confidence 368999998755 599999999999999999976 6788888899998999999999999999
Q ss_pred CcCCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecCCccccCCCCcccccccCcchHHHHH
Q psy300 245 DAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATN 324 (451)
Q Consensus 245 ~~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~d~~~~~i~~~~d~~~~~p~~~~~i~ 324 (451)
.+|||||||||++..++.||++++||+||+|+|+|+||.|||||||+..||++++|++++|++++ ++++|+
T Consensus 62 ------~~DGDPlDvlVi~~~p~~pG~vi~~r~iG~l~m~D~~e~D~Kviav~~~dp~~~~i~di~d~~~~---~~~~i~ 132 (171)
T COG0221 62 ------SDDGDPLDVLVIGEEPLAPGCVIQARPIGVLKMIDEGEKDDKVIAVPKLDPRYEHIKDISDLPEH---LLDEIQ 132 (171)
T ss_pred ------cCCCCceEEEEEcCcCCCceeEEEEEEEEEEEEeeCCCcceEEEEecCCCcchhhccchhHHHHH---HHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999998 899999
Q ss_pred HHhhhccCCCC-CcccccCCCcchhhhhhhHHHHHHHHHH
Q psy300 325 EWFKIYKIPDG-KPENVLNTRVEGESSQGFIPGCRGRTEQ 363 (451)
Q Consensus 325 ~~F~~yk~~~g-k~~~~~~~~~~~~~~~~~i~~~~~~~~~ 363 (451)
|||.+||.++. |++.+.||.|. ++|+++|++|+++|++
T Consensus 133 ~ffe~yK~le~~k~~~~~gw~~~-~~A~~~i~~~~~~~k~ 171 (171)
T COG0221 133 HFFETYKDLEKGKWVKVEGWEDA-EEAKKEIKEAIERYKE 171 (171)
T ss_pred HHHHHHHhcCCCcEEEeccccCH-HHHHHHHHHHHHHhhC
Confidence 99999999995 99999999995 7889999999999974
No 10
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.90 E-value=7.3e-23 Score=207.77 Aligned_cols=130 Identities=22% Similarity=0.453 Sum_probs=120.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC-----
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG----- 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G----- 100 (451)
......++|||+|||.++++++|+++|+.||+|.+|+|++|. +++++|||||+|.++++|.+|+..|++..+.+
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 345578999999999999999999999999999999999997 99999999999999999999999999876654
Q ss_pred ----------------------CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ----------------------KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ----------------------~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.|..+.++++ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 182 ~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~ 260 (346)
T TIGR01659 182 SYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIP 260 (346)
T ss_pred ecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCcc
Confidence 3799999999999999999999988 4889999999999999999999999998754
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.88 E-value=4.5e-22 Score=212.70 Aligned_cols=131 Identities=26% Similarity=0.452 Sum_probs=119.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC----
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG---- 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G---- 100 (451)
.......++|||+|||+++++++|+++|++||+|.+|++++|+ +|+++|||||+|.+.++|.+|+..+||..+.|
T Consensus 101 ~~a~~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik 180 (612)
T TIGR01645 101 QQALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 180 (612)
T ss_pred hhhhcCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence 3345577899999999999999999999999999999999997 99999999999999999999999998876544
Q ss_pred ----------------------------------CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHH
Q psy300 101 ----------------------------------KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAV 145 (451)
Q Consensus 101 ----------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~ 145 (451)
.+++++|+++|+.||.|.++++++++ +++++|||||+|.+.++|.
T Consensus 181 V~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 181 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 25899999999999999999999984 6789999999999999999
Q ss_pred HHHHhcCCCcc
Q psy300 146 KAILKSNKKPY 156 (451)
Q Consensus 146 ~Ai~~ln~riy 156 (451)
+|+..+|+..+
T Consensus 261 kAI~amNg~el 271 (612)
T TIGR01645 261 EAIASMNLFDL 271 (612)
T ss_pred HHHHHhCCCee
Confidence 99999998754
No 12
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.87 E-value=8.7e-22 Score=200.19 Aligned_cols=126 Identities=29% Similarity=0.519 Sum_probs=117.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC---------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG--------- 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G--------- 100 (451)
+.++|||+|||.++++++|+++|++||+|.+|++++++ +|+++|||||+|.+.++|.+|+..+||..+.|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 47899999999999999999999999999999999997 89999999999999999999999999887765
Q ss_pred ------------------CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ------------------KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ------------------~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|..|+..+|+..+
T Consensus 82 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~ 156 (352)
T TIGR01661 82 PSSDSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTP 156 (352)
T ss_pred ccccccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCcc
Confidence 3699999999999999999999887 4678999999999999999999999998765
No 13
>KOG0144|consensus
Probab=99.87 E-value=4.3e-22 Score=198.53 Aligned_cols=127 Identities=31% Similarity=0.627 Sum_probs=117.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCc-----------
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKK----------- 96 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~----------- 96 (451)
+...-++|||-+|..++|.||+++|++||.|.+|.|++|+ |+.++|||||.|.+.++|.+|+.++++.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 3566799999999999999999999999999999999999 9999999999999999999999887542
Q ss_pred ----------------cCCC----CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 97 ----------------PYKG----KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 97 ----------------~f~G----~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
.|.| ++||.+++++|++||.|++|.+++|+.+.|||||||.|++.+.|..||.++|+..
T Consensus 111 vk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~ 189 (510)
T KOG0144|consen 111 VKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQ 189 (510)
T ss_pred ecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccce
Confidence 2333 4799999999999999999999999999999999999999999999999999864
No 14
>KOG0148|consensus
Probab=99.85 E-value=4.6e-21 Score=181.51 Aligned_cols=125 Identities=29% Similarity=0.582 Sum_probs=114.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC----
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG---- 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G---- 100 (451)
+...+..-.+||+.|+..++.++|++.|.+||+|.+++++||. |++|||||||.|.+.++|++||..|||.=+.+
T Consensus 56 k~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IR 135 (321)
T KOG0148|consen 56 KPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIR 135 (321)
T ss_pred CCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceee
Confidence 3444457799999999999999999999999999999999998 99999999999999999999999999854332
Q ss_pred ---------------------------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecch
Q psy300 101 ---------------------------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANK 141 (451)
Q Consensus 101 ---------------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~ 141 (451)
-+|+++|++.|++||.|.++++.++ +||+||.|++.
T Consensus 136 TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~-----qGYaFVrF~tk 210 (321)
T KOG0148|consen 136 TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD-----QGYAFVRFETK 210 (321)
T ss_pred ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc-----cceEEEEecch
Confidence 1799999999999999999999998 89999999999
Q ss_pred HHHHHHHHhcCCCc
Q psy300 142 ISAVKAILKSNKKP 155 (451)
Q Consensus 142 e~A~~Ai~~ln~ri 155 (451)
|+|.+||..+|+.-
T Consensus 211 EaAahAIv~mNnte 224 (321)
T KOG0148|consen 211 EAAAHAIVQMNNTE 224 (321)
T ss_pred hhHHHHHHHhcCce
Confidence 99999999999764
No 15
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.84 E-value=1.5e-20 Score=203.22 Aligned_cols=124 Identities=23% Similarity=0.509 Sum_probs=116.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC-----------
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG----------- 100 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G----------- 100 (451)
.+|||+|||.++|+++|+++|++||+|.+|++.+|. |++++|||||+|.+.++|.+|+..+|+..+.|
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 379999999999999999999999999999999998 89999999999999999999999998875544
Q ss_pred ------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++++++|+++|++||.|.+|.++.+.+|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 81 ~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~ 154 (562)
T TIGR01628 81 PSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLL 154 (562)
T ss_pred ccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEe
Confidence 37999999999999999999999998999999999999999999999999998765
No 16
>KOG0145|consensus
Probab=99.83 E-value=2.6e-20 Score=175.43 Aligned_cols=127 Identities=30% Similarity=0.564 Sum_probs=116.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC-------
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG------- 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------- 100 (451)
...+++|.|..||.++|+++++.+|+..|+|++|+++||+ +|.|.|||||.|.++++|++|+..+||-.+.-
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 3467899999999999999999999999999999999999 99999999999999999999999999854322
Q ss_pred --------------------CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 101 --------------------KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 101 --------------------~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
.+|..+|+++|++||.|..-+++.| -+|.+||.|||.|..+++|..||..+||..
T Consensus 118 ARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 118 ARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred ccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 4799999999999999888888776 579999999999999999999999999865
No 17
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.83 E-value=9e-20 Score=185.39 Aligned_cols=127 Identities=28% Similarity=0.513 Sum_probs=116.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC--------
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG-------- 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G-------- 100 (451)
...++|||+|||.++++++|+++|++||.|..++++.+. ++.++|||||+|.+.++|.+|+..|||..+.|
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~ 166 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVK 166 (352)
T ss_pred cccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEE
Confidence 356799999999999999999999999999999999887 88999999999999999999999888654322
Q ss_pred --------------------------------------------------------------------------------
Q psy300 101 -------------------------------------------------------------------------------- 100 (451)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (451)
T Consensus 167 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (352)
T TIGR01661 167 FANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASP 246 (352)
T ss_pred ECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCC
Confidence
Q ss_pred ---------------------------------CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHH
Q psy300 101 ---------------------------------KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVK 146 (451)
Q Consensus 101 ---------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~ 146 (451)
.+++++|+++|++||.|.++++++|+ +|.++|||||+|.+.++|.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 247 PATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred ccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 25899999999999999999999985 89999999999999999999
Q ss_pred HHHhcCCCcc
Q psy300 147 AILKSNKKPY 156 (451)
Q Consensus 147 Ai~~ln~riy 156 (451)
|+.+|||+.+
T Consensus 327 Ai~~lnG~~~ 336 (352)
T TIGR01661 327 AILSLNGYTL 336 (352)
T ss_pred HHHHhCCCEE
Confidence 9999999775
No 18
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.82 E-value=1.1e-19 Score=191.45 Aligned_cols=126 Identities=29% Similarity=0.498 Sum_probs=114.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC--------
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG-------- 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G-------- 100 (451)
...++|||+|||.++++++|+++|++||.|.+|+++.+. +|+++|||||+|.+.++|.+|+. ++|..+.|
T Consensus 87 ~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~ 165 (457)
T TIGR01622 87 RDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSS 165 (457)
T ss_pred cCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeec
Confidence 457799999999999999999999999999999999997 89999999999999999999996 66554433
Q ss_pred -------------------------------CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHH
Q psy300 101 -------------------------------KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAI 148 (451)
Q Consensus 101 -------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai 148 (451)
.+++++|+++|++||.|..+.++.+. +|+++|||||+|.+.++|.+|+
T Consensus 166 ~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~ 245 (457)
T TIGR01622 166 QAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEAL 245 (457)
T ss_pred chhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHH
Confidence 37899999999999999999999884 5689999999999999999999
Q ss_pred HhcCCCcc
Q psy300 149 LKSNKKPY 156 (451)
Q Consensus 149 ~~ln~riy 156 (451)
..+|+..+
T Consensus 246 ~~l~g~~i 253 (457)
T TIGR01622 246 EVMNGFEL 253 (457)
T ss_pred HhcCCcEE
Confidence 99998554
No 19
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.82 E-value=1.4e-19 Score=195.57 Aligned_cols=128 Identities=28% Similarity=0.567 Sum_probs=119.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC----C----
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK----G---- 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~----G---- 100 (451)
....++|||+|||.++++++|+++|++||.|.++.++++.+|+++|||||.|.+.++|.+|++.++|+.+. |
T Consensus 175 ~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~ 254 (562)
T TIGR01628 175 LKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLY 254 (562)
T ss_pred ccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeE
Confidence 34567899999999999999999999999999999999999999999999999999999999999888776 3
Q ss_pred -----------------------------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEec
Q psy300 101 -----------------------------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYA 139 (451)
Q Consensus 101 -----------------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~ 139 (451)
.+|+++|+++|++||.|.+++++.+.+|.++|||||+|.
T Consensus 255 v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~ 334 (562)
T TIGR01628 255 VGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFS 334 (562)
T ss_pred eecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeC
Confidence 279999999999999999999999988999999999999
Q ss_pred chHHHHHHHHhcCCCcc
Q psy300 140 NKISAVKAILKSNKKPY 156 (451)
Q Consensus 140 s~e~A~~Ai~~ln~riy 156 (451)
+.++|.+|+..+|++.+
T Consensus 335 ~~~~A~~A~~~~~g~~~ 351 (562)
T TIGR01628 335 NPEEANRAVTEMHGRML 351 (562)
T ss_pred CHHHHHHHHHHhcCCee
Confidence 99999999999998765
No 20
>KOG0117|consensus
Probab=99.81 E-value=2e-19 Score=180.28 Aligned_cols=126 Identities=25% Similarity=0.480 Sum_probs=114.0
Q ss_pred cCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccC----
Q psy300 24 RKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY---- 98 (451)
Q Consensus 24 ~~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f---- 98 (451)
.........+.||||.||.++.|++|..+|++.|+|.+++||+|+ +|.+||||||.|.+.+.|++|++.+|+..+
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK 154 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGK 154 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCC
Confidence 344445678999999999999999999999999999999999997 999999999999999999999999887532
Q ss_pred --------------CC----------------------------------------------------------------
Q psy300 99 --------------KG---------------------------------------------------------------- 100 (451)
Q Consensus 99 --------------~G---------------------------------------------------------------- 100 (451)
.|
T Consensus 155 ~igvc~Svan~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~k 234 (506)
T KOG0117|consen 155 LLGVCVSVANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIK 234 (506)
T ss_pred EeEEEEeeecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCcee
Confidence 22
Q ss_pred -----------------------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHH
Q psy300 101 -----------------------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAV 145 (451)
Q Consensus 101 -----------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~ 145 (451)
++|++.|+++|++||.|+.|+.++| ||||+|.++++|.
T Consensus 235 lwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~dav 307 (506)
T KOG0117|consen 235 LWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAV 307 (506)
T ss_pred ecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHH
Confidence 2799999999999999999999876 9999999999999
Q ss_pred HHHHhcCCCcc
Q psy300 146 KAILKSNKKPY 156 (451)
Q Consensus 146 ~Ai~~ln~riy 156 (451)
+|+..+|++..
T Consensus 308 kAm~~~ngkel 318 (506)
T KOG0117|consen 308 KAMKETNGKEL 318 (506)
T ss_pred HHHHHhcCcee
Confidence 99999999875
No 21
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.76 E-value=5.5e-18 Score=180.76 Aligned_cols=126 Identities=29% Similarity=0.458 Sum_probs=112.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC--------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK-------- 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~-------- 101 (451)
..++|||+|||..+++++|+++|++||.|..+.++.+. +|.++|||||+|.+.++|..|+..|||..+.|+
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999987 899999999999999999999999998766541
Q ss_pred --------------------------------------------C-------------cHHHHHHHhcccCcceeeEEee
Q psy300 102 --------------------------------------------I-------------TEEEFKEHFGQYGDIIDAQLLK 124 (451)
Q Consensus 102 --------------------------------------------~-------------tee~L~~~F~~fG~V~~v~v~~ 124 (451)
+ ..++|+++|++||.|..|.|++
T Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~ 453 (509)
T TIGR01642 374 VGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPR 453 (509)
T ss_pred cCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeec
Confidence 0 1257899999999999999987
Q ss_pred C----CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 125 N----ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 125 d----~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
+ .++.+.|++||+|.+.++|.+|+..|||+.|
T Consensus 454 ~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~ 489 (509)
T TIGR01642 454 PNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKF 489 (509)
T ss_pred cCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEE
Confidence 5 2345679999999999999999999999987
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.76 E-value=9.4e-18 Score=179.30 Aligned_cols=122 Identities=23% Similarity=0.414 Sum_probs=107.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC-C---------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK-G--------- 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~-G--------- 100 (451)
..++|||+|||.++++++|+++|++||.|.+++|++|.+|+|+|||||+|.+.++|++|+..||+..+. |
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 468999999999999999999999999999999999999999999999999999999999999876543 1
Q ss_pred ------------CCcHHHHHHHhcccCc-ceeeEEeeC--CCCCccceEEEEecchHHHHHHHHhcC
Q psy300 101 ------------KITEEEFKEHFGQYGD-IIDAQLLKN--ADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 101 ------------~~tee~L~~~F~~fG~-V~~v~v~~d--~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
.+++++|.+.|++++. +.++.+... ..++++|||||+|.++++|..|+..++
T Consensus 137 ~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~ 203 (578)
T TIGR01648 137 DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLM 203 (578)
T ss_pred cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhh
Confidence 3689999999999875 555555432 456789999999999999999998874
No 23
>KOG0145|consensus
Probab=99.75 E-value=3.6e-18 Score=160.96 Aligned_cols=131 Identities=28% Similarity=0.516 Sum_probs=118.2
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC---
Q psy300 25 KKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG--- 100 (451)
Q Consensus 25 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G--- 100 (451)
.+.+.-...+|||.+||+.+|.++|..+|++||.|...+++.|. +|.|||.|||.|....+|+.|+..+||..-.|
T Consensus 120 PSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~te 199 (360)
T KOG0145|consen 120 PSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTE 199 (360)
T ss_pred CChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCCCCCCCC
Confidence 34456678899999999999999999999999999999999988 99999999999999999999999999854322
Q ss_pred --------------------------------------------------------------------------------
Q psy300 101 -------------------------------------------------------------------------------- 100 (451)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (451)
T Consensus 200 pItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~~~~~g~ 279 (360)
T KOG0145|consen 200 PITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPGGPGGGW 279 (360)
T ss_pred CeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCCCCCCee
Confidence
Q ss_pred ---------CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 101 ---------KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 101 ---------~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
..+|.-|-++|.+||.|..+++++| .+++++|||||++++.++|..||..+||.-
T Consensus 280 ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~ 344 (360)
T KOG0145|consen 280 CIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYR 344 (360)
T ss_pred EEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCcc
Confidence 2588899999999999999999999 458999999999999999999999999753
No 24
>KOG0124|consensus
Probab=99.73 E-value=5.6e-18 Score=166.00 Aligned_cols=128 Identities=27% Similarity=0.492 Sum_probs=118.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC----
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG---- 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G---- 100 (451)
...-.-+|+||||.+++.+.|+.|+..|..||+|.+|.+..|+ |++++|||||+|+-++.|+.|++.|||..+.|
T Consensus 107 qqALaiMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiK 186 (544)
T KOG0124|consen 107 QQALAIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 186 (544)
T ss_pred HHHHHHhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccc
Confidence 3345568999999999999999999999999999999999999 99999999999999999999999999988877
Q ss_pred ----------------------------------CCcHHHHHHHhcccCcceeeEEeeCCCC-CccceEEEEecchHHHH
Q psy300 101 ----------------------------------KITEEEFKEHFGQYGDIIDAQLLKNADG-KLKGCGFINYANKISAV 145 (451)
Q Consensus 101 ----------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g-~srG~gFV~F~s~e~A~ 145 (451)
.++++||+..|+.||.|.+|.+.+++++ ..+||||++|.+..+..
T Consensus 187 VgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~ 266 (544)
T KOG0124|consen 187 VGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 266 (544)
T ss_pred ccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchH
Confidence 2699999999999999999999998654 57999999999999999
Q ss_pred HHHHhcCC
Q psy300 146 KAILKSNK 153 (451)
Q Consensus 146 ~Ai~~ln~ 153 (451)
.|+..||-
T Consensus 267 eAiasMNl 274 (544)
T KOG0124|consen 267 EAIASMNL 274 (544)
T ss_pred HHhhhcch
Confidence 99999983
No 25
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.71 E-value=7.1e-17 Score=171.55 Aligned_cols=119 Identities=17% Similarity=0.240 Sum_probs=103.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhc--CCccCCC--------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS--NKKPYKG-------- 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~l--ng~~f~G-------- 100 (451)
+++.|||+|||.++++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|+..+ ++..+.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~-----k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s 75 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG-----KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYS 75 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC-----CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEec
Confidence 3679999999999999999999999999999999853 789999999999999999853 3221111
Q ss_pred -------------------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHH
Q psy300 101 -------------------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 149 (451)
Q Consensus 101 -------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~ 149 (451)
.+|+++|+++|+.||.|.++.++++.. +|+|||+|.+.++|.+|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~~---~~~afVef~~~~~A~~A~~ 152 (481)
T TIGR01649 76 TSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKNN---VFQALVEFESVNSAQHAKA 152 (481)
T ss_pred CCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecCC---ceEEEEEECCHHHHHHHHH
Confidence 379999999999999999999987632 4799999999999999999
Q ss_pred hcCCCccc
Q psy300 150 KSNKKPYK 157 (451)
Q Consensus 150 ~ln~riy~ 157 (451)
.||++.+.
T Consensus 153 ~Lng~~i~ 160 (481)
T TIGR01649 153 ALNGADIY 160 (481)
T ss_pred HhcCCccc
Confidence 99998764
No 26
>KOG0131|consensus
Probab=99.70 E-value=3.7e-17 Score=147.26 Aligned_cols=128 Identities=28% Similarity=0.443 Sum_probs=113.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC------
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG------ 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------ 100 (451)
+.....+|||+||+..++++.|.++|-+.|+|.++++.+|+ +...+||||++|.++++|.-|++-||...+.|
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34577899999999999999999999999999999999998 88899999999999999999998877543333
Q ss_pred ----------------------CCcHHHHHHHhcccCcce-eeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 101 ----------------------KITEEEFKEHFGQYGDII-DAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 101 ----------------------~~tee~L~~~F~~fG~V~-~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
.+++..|.+.|+.||.+. ...++++ .+|.++|||||.|.+.+++.+|+..+|+..
T Consensus 85 kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~ 163 (203)
T KOG0131|consen 85 KASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQY 163 (203)
T ss_pred ecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccch
Confidence 379999999999999954 4677887 468899999999999999999999999875
No 27
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.70 E-value=1.2e-16 Score=170.44 Aligned_cols=122 Identities=25% Similarity=0.401 Sum_probs=102.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccC------------CCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCc
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQY------------GDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 96 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~------------G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~ 96 (451)
....++|||||||.++++++|.++|+++ +.|..+.+ +.++|||||+|.+.++|..||. |+|.
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~-----~~~kg~afVeF~~~e~A~~Al~-l~g~ 245 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNI-----NKEKNFAFLEFRTVEEATFAMA-LDSI 245 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEE-----CCCCCEEEEEeCCHHHHhhhhc-CCCe
Confidence 4456899999999999999999999975 23444444 3568999999999999999994 6554
Q ss_pred cCC----------------------------------------------------C----CCcHHHHHHHhcccCcceee
Q psy300 97 PYK----------------------------------------------------G----KITEEEFKEHFGQYGDIIDA 120 (451)
Q Consensus 97 ~f~----------------------------------------------------G----~~tee~L~~~F~~fG~V~~v 120 (451)
.|. | .+++++|+++|+.||.|..+
T Consensus 246 ~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~ 325 (509)
T TIGR01642 246 IYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAF 325 (509)
T ss_pred EeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEE
Confidence 322 2 36999999999999999999
Q ss_pred EEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 121 QLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 121 ~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++++ .+|.++|||||+|.+.++|..|+..+|+..+
T Consensus 326 ~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~ 362 (509)
T TIGR01642 326 NLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDT 362 (509)
T ss_pred EEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 99988 5789999999999999999999999988654
No 28
>KOG0123|consensus
Probab=99.70 E-value=1.1e-16 Score=163.61 Aligned_cols=117 Identities=24% Similarity=0.451 Sum_probs=110.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC------------
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG------------ 100 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------------ 100 (451)
..|||| +++|+..|.++|+++|+|.++++.+|. + |.|||||.|.++++|.+|+.++|...+.|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~ 76 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDP 76 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCC
Confidence 478999 999999999999999999999999998 6 99999999999999999999999988887
Q ss_pred ----------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ----------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ----------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++...|.++|+.||.|.+|++..+..| ++|| ||+|++.++|.+|+..+|+.+.
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll 140 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLL 140 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCccc
Confidence 3799999999999999999999999888 8999 9999999999999999998775
No 29
>KOG0123|consensus
Probab=99.69 E-value=1.5e-16 Score=162.71 Aligned_cols=120 Identities=35% Similarity=0.605 Sum_probs=113.8
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC--------------
Q psy300 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG-------------- 100 (451)
Q Consensus 35 lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G-------------- 100 (451)
+||.||+++++..+|.++|+.||+|++|++.++..| ++|| ||+|.+++.|.+|+..+||..+.|
T Consensus 79 ~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~er 156 (369)
T KOG0123|consen 79 VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKEER 156 (369)
T ss_pred eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchhhh
Confidence 999999999999999999999999999999999988 9999 999999999999999999987765
Q ss_pred ---------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ---------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ---------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++++.|.++|+.+|.|.++.++.+..|+++|||||.|.++++|..|+..+++..+
T Consensus 157 ~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~ 233 (369)
T KOG0123|consen 157 EAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIF 233 (369)
T ss_pred cccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcC
Confidence 25778999999999999999999999999999999999999999999999998775
No 30
>KOG0127|consensus
Probab=99.69 E-value=1.2e-16 Score=163.61 Aligned_cols=125 Identities=27% Similarity=0.539 Sum_probs=116.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC-----------
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG----------- 100 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G----------- 100 (451)
.||||++||++++.++|.++|+.+|+|.++.++.+. ++.+||||||.|.-.+++++|+...+++.|.|
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R 85 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKR 85 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccc
Confidence 799999999999999999999999999999999998 78999999999999999999999988877766
Q ss_pred ------------------------------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEe
Q psy300 101 ------------------------------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINY 138 (451)
Q Consensus 101 ------------------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F 138 (451)
.+...+|+.+|+.||.|.++.|++...|+-+|||||+|
T Consensus 86 ~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 86 ARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred ccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 15678999999999999999999988888889999999
Q ss_pred cchHHHHHHHHhcCCCccc
Q psy300 139 ANKISAVKAILKSNKKPYK 157 (451)
Q Consensus 139 ~s~e~A~~Ai~~ln~riy~ 157 (451)
....+|..|+..+|+..+.
T Consensus 166 k~~~dA~~Al~~~N~~~i~ 184 (678)
T KOG0127|consen 166 KEKKDAEKALEFFNGNKID 184 (678)
T ss_pred eeHHHHHHHHHhccCceec
Confidence 9999999999999987763
No 31
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.68 E-value=2.8e-16 Score=165.57 Aligned_cols=123 Identities=27% Similarity=0.481 Sum_probs=109.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC--------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK-------- 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~-------- 101 (451)
..++|||+|||.++++++|+++|++||.|.+|.++++. +|.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999988 789999999999999999999999887544320
Q ss_pred --------------------------------------------------------------------------------
Q psy300 102 -------------------------------------------------------------------------------- 101 (451)
Q Consensus 102 -------------------------------------------------------------------------------- 101 (451)
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (457)
T TIGR01622 265 DSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSRYATGAL 344 (457)
T ss_pred CCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccccccccc
Confidence
Q ss_pred --------C-------------------------------cHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchH
Q psy300 102 --------I-------------------------------TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKI 142 (451)
Q Consensus 102 --------~-------------------------------tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e 142 (451)
+ -.++|++.|++||.|..+.+... .+.|++||+|.+.+
T Consensus 345 ~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~---~~~G~~fV~F~~~e 421 (457)
T TIGR01622 345 AIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTK---NSAGKIYLKFSSVD 421 (457)
T ss_pred ccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCC---CCceeEEEEECCHH
Confidence 0 03689999999999999999743 35799999999999
Q ss_pred HHHHHHHhcCCCcc
Q psy300 143 SAVKAILKSNKKPY 156 (451)
Q Consensus 143 ~A~~Ai~~ln~riy 156 (451)
+|.+|+.+|||+.|
T Consensus 422 ~A~~A~~~lnGr~f 435 (457)
T TIGR01622 422 AALAAFQALNGRYF 435 (457)
T ss_pred HHHHHHHHhcCccc
Confidence 99999999999988
No 32
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.66 E-value=8e-16 Score=163.52 Aligned_cols=122 Identities=21% Similarity=0.341 Sum_probs=106.4
Q ss_pred CCCceEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC--------
Q psy300 30 TKRGRLFIKNLPF-KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG-------- 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~-~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G-------- 100 (451)
.+.++|||+|||. .+++++|+++|+.||.|.+|+++++ .+|||||+|.+.++|.+|+..|||..+.|
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s 348 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPS 348 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 3668999999997 6999999999999999999999886 36999999999999999999887753322
Q ss_pred --------------------------------------------------------CCcHHHHHHHhcccCc--ceeeEE
Q psy300 101 --------------------------------------------------------KITEEEFKEHFGQYGD--IIDAQL 122 (451)
Q Consensus 101 --------------------------------------------------------~~tee~L~~~F~~fG~--V~~v~v 122 (451)
++++++|+++|+.||. +..+++
T Consensus 349 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~L~~lF~~~G~~~i~~ik~ 428 (481)
T TIGR01649 349 KQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEEDLKELFAENGVHKVKKFKF 428 (481)
T ss_pred ccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHHHHHHHHhcCCccceEEEE
Confidence 2589999999999998 888888
Q ss_pred eeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 123 LKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 123 ~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
....++ ++|+|||+|++.++|..|+..+|++.+
T Consensus 429 ~~~~~~-~~~~gfVeF~~~e~A~~Al~~ln~~~l 461 (481)
T TIGR01649 429 FPKDNE-RSKMGLLEWESVEDAVEALIALNHHQL 461 (481)
T ss_pred ecCCCC-cceeEEEEcCCHHHHHHHHHHhcCCcc
Confidence 765444 589999999999999999999998765
No 33
>KOG0127|consensus
Probab=99.64 E-value=1.6e-15 Score=155.42 Aligned_cols=122 Identities=34% Similarity=0.625 Sum_probs=112.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC----------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG---------- 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G---------- 100 (451)
+..+|.|+|||+.+.+.+|..+|+.||.|.+|.|++...|+-.|||||+|.+..+|..|+..+|+..+.|
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~ 195 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVD 195 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeecc
Confidence 3789999999999999999999999999999999988877777999999999999999999999876655
Q ss_pred --------------------------------------------------------------------------------
Q psy300 101 -------------------------------------------------------------------------------- 100 (451)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (451)
T Consensus 196 Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~ 275 (678)
T KOG0127|consen 196 KDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKKE 275 (678)
T ss_pred cccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccCc
Confidence
Q ss_pred ---------------------------CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcC
Q psy300 101 ---------------------------KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 101 ---------------------------~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
.+|+++|.++|++||.|.++.++.+ .+++|+|.|||.|.+..+|+.||..-.
T Consensus 276 ~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~As 355 (678)
T KOG0127|consen 276 SDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAAS 355 (678)
T ss_pred ccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhcC
Confidence 1699999999999999999999998 689999999999999999999998863
No 34
>KOG0109|consensus
Probab=99.62 E-value=2.3e-15 Score=144.33 Aligned_cols=113 Identities=31% Similarity=0.622 Sum_probs=103.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC------------
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG------------ 100 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------------ 100 (451)
.+|||||||..+++.+|+.+|++||+|.+|.|+++ ||||..++...|..|+..|+|-.+.|
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksKs 75 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSKS 75 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-------cceEEeecccccHHHHhhcccceecceEEEEEeccccC
Confidence 47999999999999999999999999999999965 99999999999999999888766655
Q ss_pred -------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccCC
Q psy300 101 -------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGS 159 (451)
Q Consensus 101 -------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~~ 159 (451)
+++.++|+..|++||.|.+|.+++| |+||+|...++|..|+..||++.|-+.
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~~~~gk 140 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNTEFQGK 140 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhcccccccccc
Confidence 3688999999999999999999965 999999999999999999999988443
No 35
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=3.5e-14 Score=152.04 Aligned_cols=120 Identities=25% Similarity=0.439 Sum_probs=99.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEeECC--CCCceeEEEEEEccHHHHHHHHHhcCC-c---------
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGD-IIDAQLLKNA--DGKLKGCGFINYANKISAVKAILKSNK-K--------- 96 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~-I~~i~l~~d~--tg~skG~aFV~F~~~~~A~~Al~~lng-~--------- 96 (451)
...++|||+|||.++++++|.+.|++++. +.++.+.... .++++|||||+|.+.++|..|+..++. .
T Consensus 136 ~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I~ 215 (578)
T TIGR01648 136 VDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVIA 215 (578)
T ss_pred ccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceEE
Confidence 35789999999999999999999999975 5555444332 578899999999999999999987642 1
Q ss_pred --------------------cCCC----CCcHHHHHHHhccc--CcceeeEEeeCCCCCccceEEEEecchHHHHHHHHh
Q psy300 97 --------------------PYKG----KITEEEFKEHFGQY--GDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 150 (451)
Q Consensus 97 --------------------~f~G----~~tee~L~~~F~~f--G~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ 150 (451)
+|.+ .+++++|+++|++| |.|+++.++ ++||||+|++.++|.+|+..
T Consensus 216 VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-------rgfAFVeF~s~e~A~kAi~~ 288 (578)
T TIGR01648 216 VDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-------RDYAFVHFEDREDAVKAMDE 288 (578)
T ss_pred EEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-------cCeEEEEeCCHHHHHHHHHH
Confidence 1112 37999999999999 999998876 46999999999999999999
Q ss_pred cCCCcc
Q psy300 151 SNKKPY 156 (451)
Q Consensus 151 ln~riy 156 (451)
+|++.+
T Consensus 289 lnG~~i 294 (578)
T TIGR01648 289 LNGKEL 294 (578)
T ss_pred hCCCEE
Confidence 998876
No 36
>KOG0146|consensus
Probab=99.54 E-value=2.8e-14 Score=135.36 Aligned_cols=68 Identities=25% Similarity=0.523 Sum_probs=63.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCc
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 96 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~ 96 (451)
....++||||-|.+.-+|+|++.+|..||.|.+|.+++.++|.||||+||.|.+..+|+.||..++|.
T Consensus 16 g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgS 83 (371)
T KOG0146|consen 16 GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGS 83 (371)
T ss_pred CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhccc
Confidence 34678999999999999999999999999999999999999999999999999999999999988764
No 37
>KOG1626|consensus
Probab=99.52 E-value=4.1e-15 Score=140.25 Aligned_cols=46 Identities=52% Similarity=0.814 Sum_probs=42.3
Q ss_pred CCCccCCccCCCccccCCCCEEEEEEeecCCCccceeeeccccceEE
Q psy300 381 ENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGNAMEMRLY 427 (451)
Q Consensus 381 ~~~~~s~~hd~~l~~~~~~~~~~~~~e~p~~~~~k~e~~~~~~~~~~ 427 (451)
.|++|||||||||+++ ...+|||||||||||||||||+|++++|=|
T Consensus 24 ~~~~iS~fhdipl~a~-~~~~~nmvvEiPrwtnak~EIs~k~~~~pi 69 (279)
T KOG1626|consen 24 NGRIISPFHDIPLAAH-PWHDLNMVVEIPRWTNAKMEISKKEPFNPI 69 (279)
T ss_pred CCccccccccCccccC-ccccEeecccccceeeeEEEEeccCCCCcc
Confidence 3469999999999998 469999999999999999999999999966
No 38
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.49 E-value=2.5e-13 Score=145.90 Aligned_cols=67 Identities=30% Similarity=0.491 Sum_probs=62.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCcc
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKP 97 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~ 97 (451)
..++|||+|||.++++++|+++|+.||.|.++++.+++ +|+++|||||+|.+.++|.+|+..||+..
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~e 270 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFD 270 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCe
Confidence 45799999999999999999999999999999999998 78999999999999999999999887653
No 39
>KOG0144|consensus
Probab=99.49 E-value=4.1e-14 Score=141.87 Aligned_cols=67 Identities=34% Similarity=0.614 Sum_probs=63.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCc
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 96 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~ 96 (451)
...++||||-|++.++|.+++++|++||.|++|.|+||..|.|||||||.|.+.+.|..|++.|||+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~ 188 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGT 188 (510)
T ss_pred ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccc
Confidence 4578999999999999999999999999999999999999999999999999999999999998874
No 40
>KOG0110|consensus
Probab=99.48 E-value=8.2e-14 Score=147.12 Aligned_cols=125 Identities=26% Similarity=0.462 Sum_probs=110.2
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCC----ceeEEEEEEccHHHHHHHHHhcCCccCCCC------
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGK----LKGCGFINYANKISAVKAILKSNKKPYKGK------ 101 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~----skG~aFV~F~~~~~A~~Al~~lng~~f~G~------ 101 (451)
.++|||.||+++++.++|..+|...|.|.++.|..-+++. |.|||||+|.++++|++|++.|+|+.+.|.
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 4459999999999999999999999999999887655442 569999999999999999999999888771
Q ss_pred ------------------------------CcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHh
Q psy300 102 ------------------------------ITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 150 (451)
Q Consensus 102 ------------------------------~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ 150 (451)
.+-.+++++|..||.+.++++++. ..+.++|||||.|-++.+|.+|+..
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 477999999999999999999986 4566799999999999999999999
Q ss_pred cCCCcc
Q psy300 151 SNKKPY 156 (451)
Q Consensus 151 ln~riy 156 (451)
+...-+
T Consensus 675 l~STHl 680 (725)
T KOG0110|consen 675 LGSTHL 680 (725)
T ss_pred hcccce
Confidence 865444
No 41
>KOG0148|consensus
Probab=99.47 E-value=1.7e-13 Score=130.39 Aligned_cols=122 Identities=25% Similarity=0.414 Sum_probs=92.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC----CCcH
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG----KITE 104 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G----~~te 104 (451)
....++|||+||+.++||+-|..+|++.|+|.+++++.+.-+... ++.. .+ . .+-...-+-..|.| .++.
T Consensus 3 ~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~w--a~~p-~n--Q-sk~t~~~hfhvfvgdls~eI~~ 76 (321)
T KOG0148|consen 3 SDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNW--ATAP-GN--Q-SKPTSNQHFHVFVGDLSPEIDN 76 (321)
T ss_pred CCCCceEEeeccChhhHHHHHHHHHHhccccccceeehhhhcccc--ccCc-cc--C-CCCccccceeEEehhcchhcch
Confidence 346789999999999999999999999999999999987311100 0000 00 0 00000001123333 4788
Q ss_pred HHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 105 EEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 105 e~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++|++.|.+||+|.+++|++| .+++|+|||||.|-..++|..||..|||...
T Consensus 77 e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 77 EKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred HHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 999999999999999999999 6899999999999999999999999999763
No 42
>KOG4205|consensus
Probab=99.46 E-value=7.8e-14 Score=138.72 Aligned_cols=120 Identities=29% Similarity=0.630 Sum_probs=105.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHh----cCC----------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILK----SNK---------- 95 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~----lng---------- 95 (451)
+.+++||++|+.+++++.|++.|++||+|.+|.+++|+ +++++||+||+|.+++.+.+++.. +.|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~dgr~ve~k~av~ 84 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKLDGRSVEPKRAVS 84 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecccccccCCccccceeccC
Confidence 77899999999999999999999999999999999999 999999999999998888887754 222
Q ss_pred --------------ccCCC----CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHh
Q psy300 96 --------------KPYKG----KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 150 (451)
Q Consensus 96 --------------~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ 150 (451)
++|.| .+++++++++|++||.|..+.++.| .+.+++|||||.|.+++++.++...
T Consensus 85 r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~ 158 (311)
T KOG4205|consen 85 REDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ 158 (311)
T ss_pred cccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc
Confidence 23344 4799999999999999999999887 5678999999999999998887654
No 43
>KOG0147|consensus
Probab=99.45 E-value=7.6e-14 Score=143.89 Aligned_cols=125 Identities=26% Similarity=0.456 Sum_probs=112.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC-------
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG------- 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------- 100 (451)
....+++|+-.|+...+.-+|.+||+.+|.|..|+++.|+ +++++|.|||+|.+.+.+..|+. |.|..+.|
T Consensus 176 ERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~pv~vq~ 254 (549)
T KOG0147|consen 176 ERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGVPVIVQL 254 (549)
T ss_pred HHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCceeEecc
Confidence 3356899999999999999999999999999999999998 99999999999999999888873 45443333
Q ss_pred ----------------------------------CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHH
Q psy300 101 ----------------------------------KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAV 145 (451)
Q Consensus 101 ----------------------------------~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~ 145 (451)
++++++|+.+|+.||.|+.+.+++| ++|+++||||++|.+.++|.
T Consensus 255 sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 255 SEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHH
Confidence 4899999999999999999999998 49999999999999999999
Q ss_pred HHHHhcCCC
Q psy300 146 KAILKSNKK 154 (451)
Q Consensus 146 ~Ai~~ln~r 154 (451)
+|+..+|+.
T Consensus 335 ~a~e~lngf 343 (549)
T KOG0147|consen 335 KALEQLNGF 343 (549)
T ss_pred HHHHHhccc
Confidence 999999983
No 44
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.44 E-value=4.5e-13 Score=120.03 Aligned_cols=72 Identities=26% Similarity=0.622 Sum_probs=67.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....++|||+|||.++++++|+++|++||.|.+++++.+. +++++|||||+|.+.++|++|++.+|+..+.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G 103 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG 103 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3457799999999999999999999999999999999998 99999999999999999999999999987665
No 45
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.43 E-value=4.4e-13 Score=103.54 Aligned_cols=66 Identities=36% Similarity=0.683 Sum_probs=63.3
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 35 lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
|||+|||.++++++|+++|++||.|..+.+..+.++.++|+|||+|.+.++|.+|++.++|..+.|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~ 66 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING 66 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc
Confidence 799999999999999999999999999999998889999999999999999999999999988776
No 46
>PLN02707 Soluble inorganic pyrophosphatase
Probab=99.42 E-value=1.5e-13 Score=133.14 Aligned_cols=48 Identities=44% Similarity=0.608 Sum_probs=42.2
Q ss_pred CCCCccCCccCCCccccCCCCEEEEEEeecCCCccceeeeccccceEEEE
Q psy300 380 SENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGNAMEMRLYLV 429 (451)
Q Consensus 380 ~~~~~~s~~hd~~l~~~~~~~~~~~~~e~p~~~~~k~e~~~~~~~~~~~~ 429 (451)
.+|+++||||||||+. ..+++||||||||||++||||+|++++|..-+
T Consensus 52 ~~g~~~spwHdIpl~~--~~~~vn~VVEIPrgs~~KyEidk~~~~npi~q 99 (267)
T PLN02707 52 GSGKKVSPWHDIPLHA--GDGTFNFVVEIPKETSAKMEVATDEPFTPIKQ 99 (267)
T ss_pred CCCCccCchhcCCCCC--CCCEEEEEEEECCCCceeEEECccCCCCCEEE
Confidence 4588899999999983 35999999999999999999999999886544
No 47
>KOG0105|consensus
Probab=99.42 E-value=1.1e-12 Score=118.78 Aligned_cols=119 Identities=24% Similarity=0.439 Sum_probs=103.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC---------
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG--------- 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G--------- 100 (451)
...++|||+|||.++.+.+|.++|.+||.|.+|.|... -...+||||+|+++.+|+.|+..-+|-.|.|
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r--~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR--PGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC--CCCCCeeEEEecCccchhhhhhcccccccCcceEEEEecc
Confidence 46789999999999999999999999999999988432 2236799999999999999998877655543
Q ss_pred --------------------------------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEE
Q psy300 101 --------------------------------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFI 136 (451)
Q Consensus 101 --------------------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV 136 (451)
+.++++|++++.+-|.|....+.+| |++.|
T Consensus 82 ggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g~GvV 155 (241)
T KOG0105|consen 82 GGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------GVGVV 155 (241)
T ss_pred CCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------cceee
Confidence 2589999999999999999999997 57899
Q ss_pred EecchHHHHHHHHhcCCCcc
Q psy300 137 NYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 137 ~F~s~e~A~~Ai~~ln~riy 156 (451)
+|...++.+-|+.+++...+
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeehhhHHHHHHhhccccc
Confidence 99999999999999987655
No 48
>KOG0147|consensus
Probab=99.33 E-value=3.2e-12 Score=132.03 Aligned_cols=122 Identities=30% Similarity=0.478 Sum_probs=108.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC--------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK-------- 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~-------- 101 (451)
++.+||||||-.++++++|+.+|+.||.|..|.+.+|. ||.++||||++|.+.++|.+|+..|||..+-|+
T Consensus 277 p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~ 356 (549)
T KOG0147|consen 277 PMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVT 356 (549)
T ss_pred chhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEee
Confidence 45559999999999999999999999999999999998 999999999999999999999999998554330
Q ss_pred --------------------------------------------------------------------------------
Q psy300 102 -------------------------------------------------------------------------------- 101 (451)
Q Consensus 102 -------------------------------------------------------------------------------- 101 (451)
T Consensus 357 ~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~ 436 (549)
T KOG0147|consen 357 ERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKLASAAQFNGVVRVRSVDPADAS 436 (549)
T ss_pred eecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhccccchHHhhcCCcCccccCccccc
Confidence
Q ss_pred ----------------------------CcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCC
Q psy300 102 ----------------------------ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 102 ----------------------------~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
--.+++.+.+.+||.|..+-|.++ |-|+.||.|.+.+.|..|+.++||
T Consensus 437 p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~n----s~g~VYvrc~s~~~A~~a~~alhg 512 (549)
T KOG0147|consen 437 PAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKN----SAGCVYVRCPSAEAAGTAVKALHG 512 (549)
T ss_pred cccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccC----CCceEEEecCcHHHHHHHHHHHhh
Confidence 023778888899999999888765 249999999999999999999999
Q ss_pred Ccc
Q psy300 154 KPY 156 (451)
Q Consensus 154 riy 156 (451)
++|
T Consensus 513 rWF 515 (549)
T KOG0147|consen 513 RWF 515 (549)
T ss_pred hhh
Confidence 998
No 49
>KOG1548|consensus
Probab=99.31 E-value=1.4e-11 Score=120.90 Aligned_cols=126 Identities=22% Similarity=0.395 Sum_probs=110.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIID--------AQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 99 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~--------i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~ 99 (451)
....++.|||.|||.++|.+++.++|+++|-|.. |+|-++..|.-+|=|.+.|...+++..|+..|++..|.
T Consensus 130 ~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~r 209 (382)
T KOG1548|consen 130 EPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELR 209 (382)
T ss_pred ccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccccc
Confidence 3455778999999999999999999999998854 78888889999999999999999999999999887776
Q ss_pred CC----------------------------------------------------------------------------Cc
Q psy300 100 GK----------------------------------------------------------------------------IT 103 (451)
Q Consensus 100 G~----------------------------------------------------------------------------~t 103 (451)
|. --
T Consensus 210 g~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dl 289 (382)
T KOG1548|consen 210 GKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDL 289 (382)
T ss_pred CcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHH
Confidence 60 13
Q ss_pred HHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 104 ee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++|++-+++||.|.++.|... .+.|.+-|.|.+.++|..|+..|+||.|
T Consensus 290 kedl~eec~K~G~v~~vvv~d~---hPdGvvtV~f~n~eeA~~ciq~m~GR~f 339 (382)
T KOG1548|consen 290 KEDLTEECEKFGQVRKVVVYDR---HPDGVVTVSFRNNEEADQCIQTMDGRWF 339 (382)
T ss_pred HHHHHHHHHHhCCcceEEEecc---CCCceeEEEeCChHHHHHHHHHhcCeee
Confidence 5788888999999999999753 4578899999999999999999999998
No 50
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.28 E-value=1.5e-11 Score=95.69 Aligned_cols=67 Identities=31% Similarity=0.641 Sum_probs=61.2
Q ss_pred EEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 35 lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
|||+|||.++++++|+++|+.||.|..+++..++.|.++|+|||+|.++++|.+|+..+++..+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~ 67 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGR 67 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCE
Confidence 7999999999999999999999999999999987889999999999999999999999988887763
No 51
>KOG0149|consensus
Probab=99.28 E-value=6.4e-12 Score=117.90 Aligned_cols=75 Identities=24% Similarity=0.546 Sum_probs=65.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCCCcH
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGKITE 104 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~~te 104 (451)
+..-++||||||+..+..+.|+++|++||+|++..++.|+ +|+|||||||+|.+.++|.+|++..| -++.||.+.
T Consensus 9 DT~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aN 84 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKAN 84 (247)
T ss_pred CceEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCC-Ccccccccc
Confidence 3356799999999999999999999999999999999999 99999999999999999999987654 345554443
No 52
>KOG4212|consensus
Probab=99.24 E-value=7.8e-11 Score=118.57 Aligned_cols=123 Identities=25% Similarity=0.509 Sum_probs=111.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhc-cCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC----------
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFG-QYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG---------- 100 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~-~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G---------- 100 (451)
.+.+||.|+|+++...+|+++|. +.|+|..|.|+.|.+|++||+|.|+|.+++.+++|++.||...+.|
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 45699999999999999999997 7899999999999999999999999999999999999887644332
Q ss_pred --------------------------------------------------------------------------------
Q psy300 101 -------------------------------------------------------------------------------- 100 (451)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (451)
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence
Q ss_pred ----------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCC
Q psy300 101 ----------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 154 (451)
Q Consensus 101 ----------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~r 154 (451)
.+..+.|++.|.--|.|+.+.+-.|+.|.++||+.++|+.+-+|..||..++..
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~~ 279 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDRQ 279 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhccC
Confidence 157799999999999999999999989999999999999999999999999853
No 53
>KOG0126|consensus
Probab=99.19 E-value=3.2e-12 Score=115.45 Aligned_cols=101 Identities=28% Similarity=0.493 Sum_probs=80.9
Q ss_pred ChhhhhhhhhhhhhhhcCccccccC---CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEE
Q psy300 1 MEKLAKKKKVKKEFKKKGKKKIERK---KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCG 76 (451)
Q Consensus 1 ~e~~~~kk~~~~~~~~~~~~~~~~~---~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~a 76 (451)
|+-+.+-|+..+-+.++-+...... -..-..+.-|||||||++.||.||.-+|++||+|..|.|+||. ||+|+|||
T Consensus 1 mnplt~vk~i~~lne~Elq~g~~~~~SWH~~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFa 80 (219)
T KOG0126|consen 1 MNPLTNVKNIQKLNERELQLGIADKKSWHQEYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFA 80 (219)
T ss_pred CchhHHHHHHHHhhHHhhccccccccchhhhcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceE
Confidence 3444444555454444444333321 1234578899999999999999999999999999999999998 99999999
Q ss_pred EEEEccHHHHHHHHHhcCCccCCCC
Q psy300 77 FINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 77 FV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
|+.|++..+...|+..+||..+.|+
T Consensus 81 FLcYEDQRSTILAVDN~NGiki~gR 105 (219)
T KOG0126|consen 81 FLCYEDQRSTILAVDNLNGIKILGR 105 (219)
T ss_pred EEEecCccceEEEEeccCCceecce
Confidence 9999999999999999999988885
No 54
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.18 E-value=6.7e-11 Score=120.52 Aligned_cols=71 Identities=30% Similarity=0.607 Sum_probs=66.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...++|||+|||.++++++|+++|++||.|.+++++++. +++++|||||+|.+.++|++|++.||+..+.|
T Consensus 191 ~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g 262 (346)
T TIGR01659 191 IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEG 262 (346)
T ss_pred cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 356789999999999999999999999999999999998 99999999999999999999999999987765
No 55
>KOG0122|consensus
Probab=99.17 E-value=7.4e-11 Score=111.22 Aligned_cols=70 Identities=24% Similarity=0.457 Sum_probs=65.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 98 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f 98 (451)
...+++|-|.|||.++++.+|.++|.+||.|..+.|.+|+ ||.+||||||.|.+.++|.+|+..|||.-|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy 256 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY 256 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc
Confidence 3378899999999999999999999999999999999998 999999999999999999999999998643
No 56
>KOG4206|consensus
Probab=99.12 E-value=6.2e-10 Score=104.24 Aligned_cols=118 Identities=25% Similarity=0.439 Sum_probs=102.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHH----HhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC-----
Q psy300 30 TKRGRLFIKNLPFKITEEEFKE----HFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG----- 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~----~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G----- 100 (451)
.++.||||.||+..+..++|++ +|++||.|..|... ++.+.||-|||.|.+.+.|..|+.+|+|..|.|
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~--kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAF--KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEec--CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 3555999999999999999988 99999999988875 378899999999999999999999999987766
Q ss_pred ------------------------------------------------------------------------CCcHHHHH
Q psy300 101 ------------------------------------------------------------------------KITEEEFK 108 (451)
Q Consensus 101 ------------------------------------------------------------------------~~tee~L~ 108 (451)
.++.+.|.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 13568889
Q ss_pred HHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCC
Q psy300 109 EHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 109 ~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
.+|++|.....++++... .+.|||+|.+...|..|...+.+
T Consensus 165 ~lf~qf~g~keir~i~~~----~~iAfve~~~d~~a~~a~~~lq~ 205 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPPR----SGIAFVEFLSDRQASAAQQALQG 205 (221)
T ss_pred HHHhhCcccceeEeccCC----CceeEEecchhhhhHHHhhhhcc
Confidence 999999999999998753 67899999999888888888754
No 57
>smart00362 RRM_2 RNA recognition motif.
Probab=99.11 E-value=2.9e-10 Score=86.62 Aligned_cols=66 Identities=38% Similarity=0.621 Sum_probs=61.4
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 34 ~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
+|||+|||..++.++|+++|++||++.++.+.++. +.++|+|||+|.+.++|.+|+..+++..+.|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~ 66 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKLGG 66 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEECC
Confidence 58999999999999999999999999999998876 7789999999999999999999999877765
No 58
>KOG0125|consensus
Probab=99.10 E-value=1.3e-10 Score=113.53 Aligned_cols=75 Identities=25% Similarity=0.563 Sum_probs=67.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
++.....++|+|+|||+...+-||+.+|.+||+|++|.|+.+..| |||||||+|++.++|++|.++|+|..+.||
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~VEGR 164 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVVEGR 164 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhcceeece
Confidence 334456689999999999999999999999999999999987544 799999999999999999999999999885
No 59
>PRK00642 inorganic pyrophosphatase; Provisional
Probab=99.09 E-value=1.3e-10 Score=109.32 Aligned_cols=44 Identities=18% Similarity=0.246 Sum_probs=38.8
Q ss_pred CCccCCccCCCccccCCCCEEEEEEeecCCCccceeeeccccceE
Q psy300 382 NGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGNAMEMRL 426 (451)
Q Consensus 382 ~~~~s~~hd~~l~~~~~~~~~~~~~e~p~~~~~k~e~~~~~~~~~ 426 (451)
+-.+|||||||+..+. .+++||||||||||++|||+.+++....
T Consensus 6 ~~~~spwhdi~~~~~~-~~~vn~VIEIP~gs~~KyE~dk~~g~~~ 49 (205)
T PRK00642 6 LSRAHPWHGLSLGPDA-PESVCCYIEITPFDTVKYELDKATGYLK 49 (205)
T ss_pred ccccCccccCCCCCCC-CCEEEEEEEECCCCCeeEEEecCCCceE
Confidence 4568999999998765 5899999999999999999999987664
No 60
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.09 E-value=3.2e-10 Score=109.55 Aligned_cols=68 Identities=19% Similarity=0.301 Sum_probs=62.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
..++|||+|||+++++++|+++|+.||.|.+|.|+++. .++|||||+|.++++|..|+. |+|..+.|+
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--~~~GfAFVtF~d~eaAe~All-LnG~~l~gr 70 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--ERSQIAYVTFKDPQGAETALL-LSGATIVDQ 70 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCc
Confidence 35799999999999999999999999999999998875 357999999999999999995 999988884
No 61
>KOG0106|consensus
Probab=99.09 E-value=8.8e-11 Score=110.67 Aligned_cols=113 Identities=25% Similarity=0.521 Sum_probs=98.9
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC-----------
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG----------- 100 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G----------- 100 (451)
+.++|||+||+.+.+.+|..+|..||.+.++.+. .||+||.|.+..+|..|+..+|++.|.|
T Consensus 1 m~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 1 MPRVYIGRLPYRARERDVERFFKGYGKIPDADMK-------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CCceeecccCCccchhHHHHHHhhccccccceee-------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 3579999999999999999999999999999885 4799999999999999999998887653
Q ss_pred ------------------------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHH
Q psy300 101 ------------------------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISA 144 (451)
Q Consensus 101 ------------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A 144 (451)
++.+++|.++|.++|.+.+... .++++||+|++.++|
T Consensus 74 ~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 74 RRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhh
Confidence 1477999999999999965555 267999999999999
Q ss_pred HHHHHhcCCCcccC
Q psy300 145 VKAILKSNKKPYKG 158 (451)
Q Consensus 145 ~~Ai~~ln~riy~~ 158 (451)
.+|+..+++...+.
T Consensus 147 ~ra~~~l~~~~~~~ 160 (216)
T KOG0106|consen 147 KRALEKLDGKKLNG 160 (216)
T ss_pred hhcchhccchhhcC
Confidence 99999999876643
No 62
>KOG0107|consensus
Probab=99.06 E-value=2.4e-10 Score=102.96 Aligned_cols=67 Identities=21% Similarity=0.399 Sum_probs=62.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.-.++||||||+.++++.+|...|..||++.++.+-+. ..|||||+|+++.+|..|+..|+|+.+.|
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG 74 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICG 74 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccC
Confidence 45889999999999999999999999999999998764 57899999999999999999999998876
No 63
>KOG0113|consensus
Probab=99.06 E-value=3.2e-10 Score=109.61 Aligned_cols=71 Identities=25% Similarity=0.495 Sum_probs=67.1
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.+-+||||+-|+++++|..|+..|+.||+|..|+|++|. ||+|+|||||+|+.+.+...|....+|..+.|
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg 170 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG 170 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC
Confidence 467899999999999999999999999999999999998 99999999999999999999999988887766
No 64
>KOG0124|consensus
Probab=99.05 E-value=1.2e-09 Score=107.98 Aligned_cols=66 Identities=30% Similarity=0.528 Sum_probs=60.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSN 94 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~ln 94 (451)
...-.+|||..+-++.+++||+.+|+.||+|.+|++-+++ ++.++||||++|.+..+...|+..||
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMN 273 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMN 273 (544)
T ss_pred HHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcc
Confidence 3456899999999999999999999999999999999998 56689999999999999999988776
No 65
>KOG4207|consensus
Probab=99.02 E-value=2.6e-10 Score=105.16 Aligned_cols=87 Identities=21% Similarity=0.456 Sum_probs=79.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCCCcHH
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGKITEE 105 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~~tee 105 (451)
++-..+.+|-|-||.+.++.++|+.+|++||.|-+|.|.+|. |+.++|||||.|....+|+.|+++|+|.++.| -
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg----R 83 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG----R 83 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc----c
Confidence 455688999999999999999999999999999999999999 99999999999999999999999999999998 3
Q ss_pred HHHHHhcccCcc
Q psy300 106 EFKEHFGQYGDI 117 (451)
Q Consensus 106 ~L~~~F~~fG~V 117 (451)
+|+-.|.+||.-
T Consensus 84 elrVq~arygr~ 95 (256)
T KOG4207|consen 84 ELRVQMARYGRP 95 (256)
T ss_pred eeeehhhhcCCC
Confidence 555557888875
No 66
>PLN03213 repressor of silencing 3; Provisional
Probab=99.02 E-value=6.9e-10 Score=113.27 Aligned_cols=69 Identities=17% Similarity=0.320 Sum_probs=63.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccH--HHHHHHHHhcCCccCCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANK--ISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~--~~A~~Al~~lng~~f~G~ 101 (451)
....+||||||++++++++|+.+|+.||.|.++.|++. +| ||||||+|.+. .++.+|+..|||..+.|+
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR 78 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG 78 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCc
Confidence 35579999999999999999999999999999999954 67 99999999987 689999999999999983
No 67
>PLN02373 soluble inorganic pyrophosphatase
Probab=99.02 E-value=3.5e-10 Score=104.79 Aligned_cols=54 Identities=30% Similarity=0.365 Sum_probs=43.6
Q ss_pred CccCCccCCCccccCCCCEEEEEEeecCCCccceeeeccccceEEEEEeeCCCCchh
Q psy300 383 GLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGNAMEMRLYLVCFNLPSPLGY 439 (451)
Q Consensus 383 ~~~s~~hd~~l~~~~~~~~~~~~~e~p~~~~~k~e~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
-.+|||||||+.++. .+++||||||||||++|+|+.+++.+ ..+-.-|++++.|
T Consensus 7 ~~~~~whdi~~~~~~-~~~v~vVIEIP~gs~~KyE~dk~~g~--i~~Dr~l~~~~~y 60 (188)
T PLN02373 7 VAAHPWHDLEIGPGA-PAIFNCVVEITKGSKVKYELDKKTGL--IKVDRVLYSSVVY 60 (188)
T ss_pred ccCCccccCCCCCCC-CCEEEEEEEECCCCCeeEEEccCCCC--EEEeeecccCCcC
Confidence 458999999998764 68999999999999999999999753 4445556666555
No 68
>KOG4211|consensus
Probab=99.01 E-value=2.5e-09 Score=109.67 Aligned_cols=122 Identities=22% Similarity=0.401 Sum_probs=97.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcC---Ccc----------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN---KKP---------- 97 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~ln---g~~---------- 97 (451)
...-|-+++||.++|+++|.+||+..+ |.++.+.+. +|+..|-|||+|.+++++++|+++-. +.-
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-~Gr~sGeA~Ve~~seedv~~AlkkdR~~mg~RYIEVf~~~~~ 86 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-NGRPSGEAYVEFTSEEDVEKALKKDRESMGHRYIEVFTAGGA 86 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-CCCcCcceEEEeechHHHHHHHHhhHHHhCCceEEEEccCCc
Confidence 334566789999999999999999984 777666553 79999999999999999999997511 100
Q ss_pred ---------------------CCC---CCcHHHHHHHhcccCccee-eEEeeCCCCCccceEEEEecchHHHHHHHHhcC
Q psy300 98 ---------------------YKG---KITEEEFKEHFGQYGDIID-AQLLKNADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 98 ---------------------f~G---~~tee~L~~~F~~fG~V~~-v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
+.| .+|+++|.++|+---.|.. +.++.+..+++.|-|||+|++.+.|+.|+....
T Consensus 87 e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhr 166 (510)
T KOG4211|consen 87 EADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHR 166 (510)
T ss_pred cccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHH
Confidence 011 4899999999998766666 445667889999999999999999999998765
Q ss_pred CC
Q psy300 153 KK 154 (451)
Q Consensus 153 ~r 154 (451)
.+
T Consensus 167 e~ 168 (510)
T KOG4211|consen 167 EN 168 (510)
T ss_pred Hh
Confidence 43
No 69
>KOG0114|consensus
Probab=99.01 E-value=1.5e-09 Score=89.99 Aligned_cols=71 Identities=31% Similarity=0.484 Sum_probs=63.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
+..-++-|||+|||+++|.+++.++|.+||.|..|++=. +...+|-|||.|++..+|.+|+..|+|..+.+
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~--~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ 84 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN--TKETRGTAFVVYEDIFDAKKACDHLSGYNVDN 84 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecC--ccCcCceEEEEehHhhhHHHHHHHhcccccCC
Confidence 344678999999999999999999999999999999833 44568999999999999999999999988776
No 70
>smart00360 RRM RNA recognition motif.
Probab=99.01 E-value=1.2e-09 Score=82.71 Aligned_cols=64 Identities=36% Similarity=0.631 Sum_probs=59.6
Q ss_pred EcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 37 IKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 37 VgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
|+|||..+++++|+++|++||.|.++.+..++ ++.++|+|||+|.+.++|.+|+..+++..+.|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~ 65 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG 65 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC
Confidence 58999999999999999999999999999887 78999999999999999999999999877765
No 71
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.00 E-value=1.2e-09 Score=104.27 Aligned_cols=68 Identities=15% Similarity=0.268 Sum_probs=61.9
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
...+|||+||++.+|+++|+++|+.||+|.+|+|+++ ++++|+|||+|.++++|..|+ .|+|..+.+.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~ 71 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATIVDQ 71 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCeeCCc
Confidence 4579999999999999999999999999999999987 556789999999999999998 6999888773
No 72
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.00 E-value=1.2e-09 Score=104.16 Aligned_cols=70 Identities=34% Similarity=0.685 Sum_probs=67.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.++|||+|||.++++++|.++|.+||.|..+.+..++ +|+++|||||.|.+.++|..|+..+++..|.|+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~ 185 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGR 185 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCc
Confidence 5999999999999999999999999999999999997 999999999999999999999999999888874
No 73
>KOG0121|consensus
Probab=98.98 E-value=5.2e-10 Score=95.95 Aligned_cols=95 Identities=22% Similarity=0.277 Sum_probs=77.6
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCCCc
Q psy300 25 KKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGKIT 103 (451)
Q Consensus 25 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~~t 103 (451)
.......+++||||||+.-++|++|.++|++.|+|..|.+=.|+ +..+-|||||+|.+.++|..|+.-++|..+..++-
T Consensus 29 ~~~a~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 29 QLEALRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred HHHHHhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 33455688999999999999999999999999999999887787 77889999999999999999999999988877544
Q ss_pred HHHHHHHhc---ccCccee
Q psy300 104 EEEFKEHFG---QYGDIID 119 (451)
Q Consensus 104 ee~L~~~F~---~fG~V~~ 119 (451)
.-++-.=|. +||.-.+
T Consensus 109 r~D~D~GF~eGRQyGRG~s 127 (153)
T KOG0121|consen 109 RIDWDAGFVEGRQYGRGKS 127 (153)
T ss_pred eeeccccchhhhhhcCCCC
Confidence 444444342 4555433
No 74
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.96 E-value=3.5e-09 Score=80.96 Aligned_cols=67 Identities=33% Similarity=0.625 Sum_probs=62.1
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 34 ~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
+|+|+|||..+++++|+++|+.+|.|..+.+..++.+.++|+|||+|.+.++|..|+..+++..+.|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~ 67 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG 67 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 5899999999999999999999999999999988766889999999999999999999999887665
No 75
>KOG1457|consensus
Probab=98.92 E-value=1.2e-08 Score=95.36 Aligned_cols=125 Identities=18% Similarity=0.236 Sum_probs=101.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeEC-C-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC-------
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-A-DGKLKGCGFINYANKISAVKAILKSNKKPYKG------- 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d-~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------- 100 (451)
..-++|||.+||.++...+|..+|..|-.-+.+.+... + ....+-+||+.|.+...|..|+..|||..|.-
T Consensus 32 ~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLh 111 (284)
T KOG1457|consen 32 GAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLH 111 (284)
T ss_pred cccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeE
Confidence 35799999999999999999999999977666655432 2 23456899999999999999999999876531
Q ss_pred --------------------------------------------------------------------------------
Q psy300 101 -------------------------------------------------------------------------------- 100 (451)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (451)
T Consensus 112 iElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~P 191 (284)
T KOG1457|consen 112 IELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKAP 191 (284)
T ss_pred eeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcCC
Confidence
Q ss_pred -----------------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhc
Q psy300 101 -----------------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 151 (451)
Q Consensus 101 -----------------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~l 151 (451)
+++|++|+.+|+.|......++.. +.| ...||+.|+..+.|..|+..+
T Consensus 192 ~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~-~~g--~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 192 SANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA-RGG--MPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred cccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec-CCC--cceEeecHHHHHHHHHHHHHh
Confidence 279999999999998877777643 344 347999999999999999999
Q ss_pred CCCccc
Q psy300 152 NKKPYK 157 (451)
Q Consensus 152 n~riy~ 157 (451)
.|.+.-
T Consensus 269 qg~~~s 274 (284)
T KOG1457|consen 269 QGNLLS 274 (284)
T ss_pred hcceec
Confidence 886643
No 76
>KOG0120|consensus
Probab=98.92 E-value=2.2e-09 Score=112.27 Aligned_cols=126 Identities=21% Similarity=0.428 Sum_probs=109.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC--------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK-------- 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~-------- 101 (451)
...++||++||...++.++.++...||++....++.+. +|.++||||.+|.++.....|++.+||+.+.++
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~ 367 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAI 367 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhh
Confidence 45789999999999999999999999999999999988 899999999999999999999999888654430
Q ss_pred ----------------------------------------Cc-------------HHHHHHHhcccCcceeeEEeeC-CC
Q psy300 102 ----------------------------------------IT-------------EEEFKEHFGQYGDIIDAQLLKN-AD 127 (451)
Q Consensus 102 ----------------------------------------~t-------------ee~L~~~F~~fG~V~~v~v~~d-~~ 127 (451)
+| -++++.-+.+||.|.+|.++++ ..
T Consensus 368 ~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~ 447 (500)
T KOG0120|consen 368 VGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPD 447 (500)
T ss_pred ccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCC
Confidence 11 2566677889999999999886 32
Q ss_pred C---CccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 128 G---KLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 128 g---~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
+ ...|..||+|.+.++|++|..+|+|+.|
T Consensus 448 ~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF 479 (500)
T KOG0120|consen 448 ENPVPGTGKVFVEFADTEDSQRAMEELTGRKF 479 (500)
T ss_pred CCcCCCcccEEEEecChHHHHHHHHHccCcee
Confidence 2 2468899999999999999999999998
No 77
>KOG0108|consensus
Probab=98.86 E-value=4.9e-09 Score=108.93 Aligned_cols=69 Identities=28% Similarity=0.572 Sum_probs=67.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
+.+||||+|+++++++|.++|+..|.|.+++++.|+ ||+++||||++|.+.++|..|++.|||..+.|+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr 88 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGR 88 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCc
Confidence 899999999999999999999999999999999998 999999999999999999999999999999884
No 78
>KOG0111|consensus
Probab=98.80 E-value=2.5e-09 Score=99.43 Aligned_cols=73 Identities=26% Similarity=0.415 Sum_probs=67.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....++||||+|..++++.-|...|-+||.|..|.++.|. ++++||||||+|...++|..|+..||+..+.|
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G 79 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG 79 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc
Confidence 34567899999999999999999999999999999999997 99999999999999999999999999986665
No 79
>KOG1456|consensus
Probab=98.80 E-value=8.8e-08 Score=95.28 Aligned_cols=118 Identities=13% Similarity=0.208 Sum_probs=97.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhc-CCccCCC------
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS-NKKPYKG------ 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~l-ng~~f~G------ 100 (451)
..+.+--|.|++|-..++|.+|.+..+.||+|..+..+.. +..+.|+|++.+.|+.|+..- ...++.+
T Consensus 27 k~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-----~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 27 KPNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-----KRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc-----cceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 4456678999999999999999999999999998887643 557999999999999887421 1111111
Q ss_pred -------------------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHH
Q psy300 101 -------------------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 149 (451)
Q Consensus 101 -------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~ 149 (451)
.+|-+-|..++...|.|..+.|++. + .-.|.|+|++.+.|++|..
T Consensus 102 NyStsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-n---gVQAmVEFdsv~~AqrAk~ 177 (494)
T KOG1456|consen 102 NYSTSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-N---GVQAMVEFDSVEVAQRAKA 177 (494)
T ss_pred ccchhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-c---ceeeEEeechhHHHHHHHh
Confidence 2799999999999999999999885 3 3479999999999999999
Q ss_pred hcCCC
Q psy300 150 KSNKK 154 (451)
Q Consensus 150 ~ln~r 154 (451)
+|||-
T Consensus 178 alNGA 182 (494)
T KOG1456|consen 178 ALNGA 182 (494)
T ss_pred hcccc
Confidence 99874
No 80
>KOG4454|consensus
Probab=98.77 E-value=2.6e-09 Score=99.36 Aligned_cols=120 Identities=23% Similarity=0.309 Sum_probs=105.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC---------
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG--------- 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G--------- 100 (451)
...++|||+|+...++++-|.++|-+.|+|..+.|..+++++.+ ||||.|.++-.+.-|++.+||..+.+
T Consensus 7 e~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~ 85 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRC 85 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccchhhccccc
Confidence 35689999999999999999999999999999999988888888 99999999999999999999865543
Q ss_pred ---------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHh
Q psy300 101 ---------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 150 (451)
Q Consensus 101 ---------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ 150 (451)
+++++.+...|+.-|.+..+++.++..|+++.++|+.+...-+.-.+...
T Consensus 86 G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~ 144 (267)
T KOG4454|consen 86 GNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDL 144 (267)
T ss_pred CCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhh
Confidence 47999999999999999999999988899999999998766555555443
No 81
>KOG0110|consensus
Probab=98.77 E-value=3e-08 Score=105.60 Aligned_cols=124 Identities=25% Similarity=0.386 Sum_probs=102.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC-------
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG------- 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------- 100 (451)
.....+-++|+|||..+..++|..+|..||+|..+-+. +.|. -++|.|.++.+|.+|...+..+.|..
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~~G~---~aiv~fl~p~eAr~Afrklaysr~k~~plyle~ 455 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--PGGT---GAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEW 455 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--cccc---eeeeeecCccchHHHHHHhchhhhccCcccccc
Confidence 45567899999999999999999999999999988443 3333 28999999999999998765432211
Q ss_pred ----------------------------------------------------------------------CCcHHHHHHH
Q psy300 101 ----------------------------------------------------------------------KITEEEFKEH 110 (451)
Q Consensus 101 ----------------------------------------------------------------------~~tee~L~~~ 110 (451)
.+|.++|..+
T Consensus 456 aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~ 535 (725)
T KOG0110|consen 456 APEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDL 535 (725)
T ss_pred ChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHH
Confidence 1588999999
Q ss_pred hcccCcceeeEEeeCCCC----CccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 111 FGQYGDIIDAQLLKNADG----KLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 111 F~~fG~V~~v~v~~d~~g----~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
|...|.|.++.|.+.+.+ .|.|||||+|.+.++|++|+..|+|...
T Consensus 536 F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvl 585 (725)
T KOG0110|consen 536 FSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVL 585 (725)
T ss_pred HHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCcee
Confidence 999999999999765433 3669999999999999999999997764
No 82
>KOG0130|consensus
Probab=98.73 E-value=1.7e-08 Score=87.46 Aligned_cols=71 Identities=25% Similarity=0.402 Sum_probs=65.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...--|||.++-..+++++|.+.|..||+|..+.|-.|+ ||..+|||+|+|++.++|++|+..+||..+.|
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~ 141 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG 141 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC
Confidence 345679999999999999999999999999999998887 99999999999999999999999999976655
No 83
>smart00361 RRM_1 RNA recognition motif.
Probab=98.73 E-value=3e-08 Score=77.69 Aligned_cols=56 Identities=20% Similarity=0.506 Sum_probs=50.0
Q ss_pred HHHHHHHhc----cCCCeEEEE-EeECC-C--CCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 46 EEEFKEHFG----QYGDIIDAQ-LLKNA-D--GKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 46 e~~L~~~F~----~~G~I~~i~-l~~d~-t--g~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
+++|+++|+ +||.|.++. ++.++ + ++++|||||.|.+.++|.+|+..|||+.+.|+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr 65 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGR 65 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 578889998 999999995 66665 5 89999999999999999999999999988874
No 84
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.70 E-value=2.4e-08 Score=89.51 Aligned_cols=63 Identities=25% Similarity=0.610 Sum_probs=55.1
Q ss_pred CCccCCC----CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 94 NKKPYKG----KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 94 ng~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
..++|.+ .+++++|+++|++||.|.++.++.+ .+++++|||||+|.+.++|..|+..+|+..+
T Consensus 34 ~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i 101 (144)
T PLN03134 34 STKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKEL 101 (144)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 3445555 4799999999999999999999988 5789999999999999999999999987653
No 85
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.68 E-value=3.7e-08 Score=75.68 Aligned_cols=57 Identities=33% Similarity=0.605 Sum_probs=53.0
Q ss_pred CCCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 100 GKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 100 G~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
..+|+++|+++|++||.|..+.+..+.++.++|+|||+|.+.++|.+|+..+++..+
T Consensus 8 ~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~ 64 (70)
T PF00076_consen 8 PDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKI 64 (70)
T ss_dssp TTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEE
Confidence 368999999999999999999999987889999999999999999999999998665
No 86
>KOG4208|consensus
Probab=98.66 E-value=5.1e-08 Score=90.24 Aligned_cols=76 Identities=24% Similarity=0.426 Sum_probs=68.1
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhccC-CCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 25 KKPDKTKRGRLFIKNLPFKITEEEFKEHFGQY-GDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 25 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~-G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..+......-+||+.+|..+.+.++..+|.+| |.+..+++.|++ ||.|+|||||+|++++.|.-|-+.||+.+|.|
T Consensus 42 ~~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e 119 (214)
T KOG4208|consen 42 EKPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME 119 (214)
T ss_pred cCCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh
Confidence 34455677899999999999999999999999 678888888887 99999999999999999999999999987766
No 87
>KOG0149|consensus
Probab=98.66 E-value=2.5e-08 Score=93.96 Aligned_cols=60 Identities=27% Similarity=0.563 Sum_probs=54.3
Q ss_pred ccCCC----CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 96 KPYKG----KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 96 ~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
|+|.| .+..+.|+++|++||+|+++.|+.| .+|+|+|||||+|.+.++|.+|....|-.+
T Consensus 14 KifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~piI 78 (247)
T KOG0149|consen 14 KIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNPII 78 (247)
T ss_pred EEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCCcc
Confidence 56777 4788999999999999999999998 589999999999999999999999887655
No 88
>KOG0122|consensus
Probab=98.57 E-value=9.5e-08 Score=90.47 Aligned_cols=56 Identities=27% Similarity=0.514 Sum_probs=52.2
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++++++|+++|.+||.|..+-+.+| .+|.++|||||+|.++++|++||..|||.=|
T Consensus 200 d~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gy 256 (270)
T KOG0122|consen 200 DMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGY 256 (270)
T ss_pred ccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCccc
Confidence 4799999999999999999999998 6899999999999999999999999998543
No 89
>smart00361 RRM_1 RNA recognition motif.
Probab=98.55 E-value=1.2e-07 Score=74.21 Aligned_cols=53 Identities=19% Similarity=0.475 Sum_probs=46.4
Q ss_pred HHHHHHHhc----ccCcceeeE-EeeC-CC--CCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 104 EEEFKEHFG----QYGDIIDAQ-LLKN-AD--GKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 104 ee~L~~~F~----~fG~V~~v~-v~~d-~~--g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
+++|+++|+ +||.|.++. ++.+ .+ +.++|||||+|.+.++|.+|+..+|++.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~ 62 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYF 62 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 578888888 999999995 5544 34 88999999999999999999999999876
No 90
>KOG0117|consensus
Probab=98.53 E-value=1e-07 Score=96.89 Aligned_cols=63 Identities=30% Similarity=0.523 Sum_probs=59.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...-|||+||+.++|++.|+++|++||.|..|+.++| ||||.|.+.++|.+||+.+||+.+.|
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-------YaFVHf~eR~davkAm~~~ngkeldG 320 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-------YAFVHFAEREDAVKAMKETNGKELDG 320 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-------eeEEeecchHHHHHHHHHhcCceecC
Confidence 4568999999999999999999999999999998876 99999999999999999999998877
No 91
>KOG0146|consensus
Probab=98.49 E-value=2e-07 Score=89.20 Aligned_cols=73 Identities=26% Similarity=0.414 Sum_probs=67.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 98 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f 98 (451)
....++.|+|||-.||.+..+.+|..+|-.||-|.+.++..|+ |..||.||||.|.++.+|+.||..|||..+
T Consensus 279 qreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQI 352 (371)
T KOG0146|consen 279 QREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQI 352 (371)
T ss_pred hhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhh
Confidence 3356688999999999999999999999999999999999998 999999999999999999999999999644
No 92
>KOG0128|consensus
Probab=98.43 E-value=2.1e-08 Score=108.60 Aligned_cols=126 Identities=21% Similarity=0.357 Sum_probs=108.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeEC-CCCCceeEEEEEEccHHHHHHHHHhcCCccCC-------C--
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPYK-------G-- 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d-~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~-------G-- 100 (451)
.-.++||+||+..+.+.+|...|+.+|.+..+++..- ..++-||+||+.|..++++.+|+....+..+. |
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~g~p 745 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAISGPP 745 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhhhhhheeCCC
Confidence 4478999999999999999999999999888877632 37888999999999999999998754433221 1
Q ss_pred -CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 -KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 -~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
+.|.+.|+.+++.+|.+.+.+++..+.|+++|-+||.|.+..++.++..+.+...+
T Consensus 746 f~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~ 802 (881)
T KOG0128|consen 746 FQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGK 802 (881)
T ss_pred CCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhh
Confidence 35999999999999999999999999999999999999999999999988876543
No 93
>KOG0129|consensus
Probab=98.43 E-value=1.3e-06 Score=90.48 Aligned_cols=121 Identities=23% Similarity=0.425 Sum_probs=96.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC--CC--Ccee---EEEEEEccHHHHHHHHHhcC--------
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA--DG--KLKG---CGFINYANKISAVKAILKSN-------- 94 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~--tg--~skG---~aFV~F~~~~~A~~Al~~ln-------- 94 (451)
.-.++||||+||.+++|+.|...|..||.+. +...+.. .+ -++| |+|+.|+++.++..-+.+..
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~~~yf 335 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEGNYYF 335 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhcccceEE
Confidence 3568999999999999999999999999964 4444221 11 2356 99999999988876554311
Q ss_pred -----------------------------------CccCCC----CCcHHHHHHHhc-ccCcceeeEEeeC-CCCCccce
Q psy300 95 -----------------------------------KKPYKG----KITEEEFKEHFG-QYGDIIDAQLLKN-ADGKLKGC 133 (451)
Q Consensus 95 -----------------------------------g~~f~G----~~tee~L~~~F~-~fG~V~~v~v~~d-~~g~srG~ 133 (451)
.++|.| -++-++|..+|+ -||.|.++.|-.| +-+-++|-
T Consensus 336 ~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGa 415 (520)
T KOG0129|consen 336 KVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGA 415 (520)
T ss_pred EEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCc
Confidence 123333 379999999999 6999999999998 56779999
Q ss_pred EEEEecchHHHHHHHHhc
Q psy300 134 GFINYANKISAVKAILKS 151 (451)
Q Consensus 134 gFV~F~s~e~A~~Ai~~l 151 (451)
|-|+|++..+-.+||.+.
T Consensus 416 GRVtFsnqqsYi~AIsar 433 (520)
T KOG0129|consen 416 GRVTFSNQQAYIKAISAR 433 (520)
T ss_pred ceeeecccHHHHHHHhhh
Confidence 999999999999999775
No 94
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.42 E-value=4.7e-07 Score=67.42 Aligned_cols=49 Identities=24% Similarity=0.579 Sum_probs=42.9
Q ss_pred HHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 49 FKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 49 L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
|.++|++||+|.++.+..+. +++|||+|.+.++|.+|++.+||..|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~ 49 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQFNGR 49 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEETTE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 67899999999999997652 58999999999999999999999988763
No 95
>KOG0415|consensus
Probab=98.41 E-value=3.1e-07 Score=90.92 Aligned_cols=72 Identities=24% Similarity=0.418 Sum_probs=66.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.++.+-|||..|.+-++.++|.-+|+.||.|.+|.+++|. ||.|..||||+|.+.+++++|.-+|++.++..
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD 308 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD 308 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc
Confidence 4567899999999999999999999999999999999998 99999999999999999999999998876654
No 96
>KOG0131|consensus
Probab=98.40 E-value=2.9e-07 Score=83.71 Aligned_cols=72 Identities=28% Similarity=0.444 Sum_probs=64.5
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEE-EEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDA-QLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i-~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..-..++||+||.+.+++..|.+.|+.||.+.+. ++++++ ||.++||||+.|.+.+.+.+|+..+||..+..
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~n 166 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCN 166 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcC
Confidence 3345899999999999999999999999997764 788888 89999999999999999999999999987664
No 97
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.39 E-value=6.9e-07 Score=69.21 Aligned_cols=56 Identities=29% Similarity=0.574 Sum_probs=49.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++++++|+++|+.||.|..+.+..++.+.++|+|||+|.+.++|.+|+...++..+
T Consensus 9 ~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~ 64 (70)
T PF14259_consen 9 STTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEI 64 (70)
T ss_dssp T--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEE
Confidence 58999999999999999999999986789999999999999999999999876554
No 98
>KOG1190|consensus
Probab=98.36 E-value=3.5e-06 Score=84.98 Aligned_cols=161 Identities=20% Similarity=0.300 Sum_probs=118.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeE-EEEEEccHHHHHHHHHhcCCccCC-C--------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKSNKKPYK-G-------- 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~-aFV~F~~~~~A~~Al~~lng~~f~-G-------- 100 (451)
.--+++|+|+-+.++-+-|..+|++||.|..|.-.. ++-|| |.|+|.+...|+.|...|+|..+. |
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~----Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~ 224 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT----KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDF 224 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEe----cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeeh
Confidence 334788999999999999999999999998874432 23455 899999999999998887775321 1
Q ss_pred --------------------------------------------------------------------------------
Q psy300 101 -------------------------------------------------------------------------------- 100 (451)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (451)
T Consensus 225 Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsn 304 (492)
T KOG1190|consen 225 SKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSN 304 (492)
T ss_pred hhcccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEec
Confidence
Q ss_pred ----CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccCCCCCcccccccCCccccc
Q psy300 101 ----KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSENGLISPFHDIPLYSNV 176 (451)
Q Consensus 101 ----~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~~~~G~iSp~hdiPl~v~~ 176 (451)
.+|.+.|-.+|..||.|..++++.++ +--|.|+|.+...|+-|+..++|.+ |++.++.+..
T Consensus 305 ln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~-----------l~gk~lrvt~ 369 (492)
T KOG1190|consen 305 LNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHK-----------LYGKKLRVTL 369 (492)
T ss_pred CchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcce-----------ecCceEEEee
Confidence 16899999999999999999999863 3469999999999999999998865 4555554422
Q ss_pred cccccceeeccCCCCccccccccCCCCCCCcccccCC
Q psy300 177 KDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKG 213 (451)
Q Consensus 177 ~p~~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g 213 (451)
..+--+.+|+.....-.+.++....|+.+=.+.|
T Consensus 370 ---SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpg 403 (492)
T KOG1190|consen 370 ---SKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPG 403 (492)
T ss_pred ---ccCccccCCCCCCccccccccCCCCchhhccCcc
Confidence 1233455666555444444554445555433334
No 99
>KOG0132|consensus
Probab=98.33 E-value=6.5e-07 Score=96.30 Aligned_cols=65 Identities=25% Similarity=0.488 Sum_probs=59.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
-++|||||+|+.++++.||.++|+.||+|.+|.++. ++|||||.+....+|.+|+++|++..+.+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----~R~cAfI~M~~RqdA~kalqkl~n~kv~~ 484 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----PRGCAFIKMVRRQDAEKALQKLSNVKVAD 484 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----CCceeEEEEeehhHHHHHHHHHhcccccc
Confidence 468999999999999999999999999999999975 49999999999999999999998655544
No 100
>smart00360 RRM RNA recognition motif.
Probab=98.33 E-value=1.6e-06 Score=65.35 Aligned_cols=57 Identities=33% Similarity=0.578 Sum_probs=50.6
Q ss_pred CCCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 100 GKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 100 G~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
..+++++|+++|++||.|..+.+..++ ++.++|+|||+|.+.++|..|+..+++..+
T Consensus 6 ~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 6 PDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred cccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 357999999999999999999998874 588999999999999999999999986543
No 101
>KOG4205|consensus
Probab=98.29 E-value=1e-06 Score=88.13 Aligned_cols=153 Identities=22% Similarity=0.325 Sum_probs=101.6
Q ss_pred CCccCCC----CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcccCCCCCc-cccc
Q psy300 94 NKKPYKG----KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPYKGSENGL-ISPF 167 (451)
Q Consensus 94 ng~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~~~~G~-iSp~ 167 (451)
.+++|.| .++++.|++.|.+||.|.+|.+++| .+++++||+||+|.+.+....++....+.+ +|+ +.+.
T Consensus 6 ~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~~~h~~-----dgr~ve~k 80 (311)
T KOG4205|consen 6 SGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNARTHKL-----DGRSVEPK 80 (311)
T ss_pred CcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeeccccccc-----CCccccce
Confidence 3567777 4799999999999999999999998 468999999999999999999998877765 555 5555
Q ss_pred ccCCcccccccc-----ccceeeccCCCCccc-----cccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCcc
Q psy300 168 HDIPLYSNVKDK-----IFNMVVEIPRWTNAK-----MEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQT 237 (451)
Q Consensus 168 hdiPl~v~~~p~-----~vn~vvEIPrgS~~K-----~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T 237 (451)
..+|-....... ...++--+|.+...+ +|.-.....+.++.|..+.+.| .+||+ |
T Consensus 81 ~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~r-------------gFgfv--~ 145 (311)
T KOG4205|consen 81 RAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPR-------------GFGFV--T 145 (311)
T ss_pred eccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccc-------------cceee--E
Confidence 555543221111 122333455443211 1211112222344444433332 33443 4
Q ss_pred CCCCCCCCcCCCCCCCCCcceEEEeccccCCCccEEEEEEee
Q psy300 238 WENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALG 279 (451)
Q Consensus 238 ~~~p~~~~~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG 279 (451)
+ .+.|-+|.+.....+...|..++||--.
T Consensus 146 ~-------------~~e~sVdkv~~~~f~~~~gk~vevkrA~ 174 (311)
T KOG4205|consen 146 F-------------DSEDSVDKVTLQKFHDFNGKKVEVKRAI 174 (311)
T ss_pred e-------------ccccccceecccceeeecCceeeEeecc
Confidence 4 5778899999999998999999998733
No 102
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.29 E-value=1.3e-06 Score=65.09 Aligned_cols=46 Identities=24% Similarity=0.544 Sum_probs=40.9
Q ss_pred HHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 107 FKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 107 L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
|.++|++||.|..+.+..+. +++|||+|.+.++|..|+..+|++.+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l~~~~~ 46 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQLNGRQF 46 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 68899999999999998763 68999999999999999999998875
No 103
>KOG0109|consensus
Probab=98.25 E-value=1.1e-06 Score=85.29 Aligned_cols=77 Identities=22% Similarity=0.472 Sum_probs=67.7
Q ss_pred cCccccccCCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCc
Q psy300 17 KGKKKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 96 (451)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~ 96 (451)
......+.++.....+++++|+||.+..+.++|+..|.+||+|.+|.++++ |+||.|.-.++|..|+..|++.
T Consensus 63 g~nInVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-------y~fvh~d~~eda~~air~l~~~ 135 (346)
T KOG0109|consen 63 GVNINVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-------YAFVHFDRAEDAVEAIRGLDNT 135 (346)
T ss_pred ceEEEEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc-------eeEEEEeeccchHHHHhccccc
Confidence 333444555555668899999999999999999999999999999999854 9999999999999999999999
Q ss_pred cCCC
Q psy300 97 PYKG 100 (451)
Q Consensus 97 ~f~G 100 (451)
.|.|
T Consensus 136 ~~~g 139 (346)
T KOG0109|consen 136 EFQG 139 (346)
T ss_pred cccc
Confidence 9988
No 104
>KOG4207|consensus
Probab=98.22 E-value=1.1e-06 Score=81.38 Aligned_cols=61 Identities=18% Similarity=0.388 Sum_probs=55.3
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcccCCCC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPYKGSEN 161 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~~~~ 161 (451)
+++.++|+.+|++||.|-+|-|++| -+..++|||||.|....+|+.|+..|+|++..+...
T Consensus 24 RTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRel 85 (256)
T KOG4207|consen 24 RTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGREL 85 (256)
T ss_pred cCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecccee
Confidence 5799999999999999999999999 478899999999999999999999999998754443
No 105
>KOG0125|consensus
Probab=98.22 E-value=1.1e-06 Score=86.53 Aligned_cols=55 Identities=22% Similarity=0.490 Sum_probs=50.3
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
+..+.||+..|++||.|.+|+|+.++.| |||||||+|++.++|.+|..+++|.+.
T Consensus 107 rFRdpDL~aMF~kfG~VldVEIIfNERG-SKGFGFVTmen~~dadRARa~LHgt~V 161 (376)
T KOG0125|consen 107 RFRDPDLRAMFEKFGKVLDVEIIFNERG-SKGFGFVTMENPADADRARAELHGTVV 161 (376)
T ss_pred cccCccHHHHHHhhCceeeEEEEeccCC-CCccceEEecChhhHHHHHHHhhccee
Confidence 4688999999999999999999987655 799999999999999999999998764
No 106
>PRK01250 inorganic pyrophosphatase; Provisional
Probab=98.21 E-value=1.5e-06 Score=80.07 Aligned_cols=50 Identities=24% Similarity=0.304 Sum_probs=37.6
Q ss_pred CccCCCccccCCCCEEEEEEeecCCCc-cceeeeccccceEEEEEeeCCCCchh
Q psy300 387 PFHDIPLYSNVKDKIFNMVVEIPRWTN-AKMEVGNAMEMRLYLVCFNLPSPLGY 439 (451)
Q Consensus 387 ~~hd~~l~~~~~~~~~~~~~e~p~~~~-~k~e~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
.||++|...+ ..+.+||||||||||+ +|+|+.++.. +..+---|+++++|
T Consensus 2 ~~~~l~~~~~-~~~~v~vvvEIPkgs~~~KyE~d~~~g--~~~~dR~l~~~~~y 52 (176)
T PRK01250 2 SLNKIPAGKD-LPEDINVIIEIPANSDPIKYEVDKESG--ALFVDRFLYTAMFY 52 (176)
T ss_pred ChhhCCCCCC-CCCEEEEEEEeCCCCCceeEEEecCCC--CEEEeeccCCCCcC
Confidence 5899999643 4699999999999999 9999999965 23333345555544
No 107
>KOG1365|consensus
Probab=98.18 E-value=3.8e-06 Score=84.13 Aligned_cols=123 Identities=26% Similarity=0.370 Sum_probs=96.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccC----CCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhc--------------
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQY----GDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS-------------- 93 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~----G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~l-------------- 93 (451)
.--|-.++||++.++.++.++|.+- |....+-+++.++|+..|-|||.|..+++|+.|+.+-
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~khrq~iGqRYIElFRS 240 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRKHRQNIGQRYIELFRS 240 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3455667999999999999999732 3455677777779999999999999999999998641
Q ss_pred ---------CCcc---CCC-------------------------------CCcHHHHHHHhcccCc-cee--eEEeeCCC
Q psy300 94 ---------NKKP---YKG-------------------------------KITEEEFKEHFGQYGD-IID--AQLLKNAD 127 (451)
Q Consensus 94 ---------ng~~---f~G-------------------------------~~tee~L~~~F~~fG~-V~~--v~v~~d~~ 127 (451)
|+.. +.+ ..+.++|.++|..|-. |.. +.++.+.+
T Consensus 241 TaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q 320 (508)
T KOG1365|consen 241 TAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ 320 (508)
T ss_pred hHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC
Confidence 1110 100 2588999999988866 443 67777889
Q ss_pred CCccceEEEEecchHHHHHHHHhcCCC
Q psy300 128 GKLKGCGFINYANKISAVKAILKSNKK 154 (451)
Q Consensus 128 g~srG~gFV~F~s~e~A~~Ai~~ln~r 154 (451)
|++.|-|||+|.+.++|..|..+-+.+
T Consensus 321 GrPSGeAFIqm~nae~a~aaaqk~hk~ 347 (508)
T KOG1365|consen 321 GRPSGEAFIQMRNAERARAAAQKCHKK 347 (508)
T ss_pred CCcChhhhhhhhhhHHHHHHHHHHHHh
Confidence 999999999999999999998876544
No 108
>smart00362 RRM_2 RNA recognition motif.
Probab=98.17 E-value=4.7e-06 Score=62.96 Aligned_cols=55 Identities=35% Similarity=0.564 Sum_probs=49.5
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.+..+.+..+. +.++|+|||+|.+.++|..|+..+++..+
T Consensus 10 ~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~~~~~v~f~~~~~a~~a~~~~~~~~~ 64 (72)
T smart00362 10 DVTEEDLKELFSKFGPIESVKIPKDT-GKSKGFAFVEFESEEDAEKAIEALNGTKL 64 (72)
T ss_pred cCCHHHHHHHHHhcCCEEEEEEecCC-CCCCceEEEEeCCHHHHHHHHHHhCCcEE
Confidence 57899999999999999999998876 77899999999999999999999886543
No 109
>KOG0226|consensus
Probab=98.14 E-value=3.3e-06 Score=80.54 Aligned_cols=71 Identities=21% Similarity=0.424 Sum_probs=65.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....+||.|.|..+++.+.|.+.|.+|-.-...++++|. ||+++||+||.|.+++++.+|+.+|+|+...-
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs 259 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS 259 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccccc
Confidence 356899999999999999999999999888888999998 99999999999999999999999999986654
No 110
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.13 E-value=4.2e-06 Score=81.23 Aligned_cols=53 Identities=23% Similarity=0.345 Sum_probs=47.6
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++|+++|+++|+.||.|.++.+++++. ++|||||+|.++++|..|+. +++..+
T Consensus 15 ~tTE~dLrefFS~~G~I~~V~I~~d~~--~~GfAFVtF~d~eaAe~All-LnG~~l 67 (260)
T PLN03120 15 KATERDIKEFFSFSGDIEYVEMQSENE--RSQIAYVTFKDPQGAETALL-LSGATI 67 (260)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCC--CCCEEEEEeCcHHHHHHHHH-hcCCee
Confidence 589999999999999999999998753 57999999999999999995 888765
No 111
>KOG4661|consensus
Probab=98.11 E-value=4.4e-06 Score=87.15 Aligned_cols=71 Identities=23% Similarity=0.437 Sum_probs=64.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.-.++|||.+|+..+.-.+|+++|++||.|+-.+++++. +--.+.|+||++.+.++|.+||..|+.+.++|
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG 474 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG 474 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc
Confidence 346899999999999999999999999999999999986 55568999999999999999999988887777
No 112
>KOG0533|consensus
Probab=98.11 E-value=6.8e-06 Score=79.37 Aligned_cols=73 Identities=21% Similarity=0.465 Sum_probs=67.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
....++|+|.|||+.++++||.++|..||.+..+-+-.+++|+|.|.|-|.|...++|.+|++.+++..+.|+
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~ 152 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGR 152 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCc
Confidence 3345789999999999999999999999999989998899999999999999999999999999999877774
No 113
>KOG4211|consensus
Probab=98.07 E-value=1.7e-05 Score=81.89 Aligned_cols=120 Identities=25% Similarity=0.393 Sum_probs=95.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeECCCCCceeEEEEEEccHHHHHHHHHhcCC--------------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIID-AQLLKNADGKLKGCGFINYANKISAVKAILKSNK-------------- 95 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~-i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng-------------- 95 (451)
....|-+++||+.++++||.+||+..-.+.. +.++.+..+++.|-|||+|++.+.|++|+..-..
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~rhre~iGhRYIEvF~Ss~ 181 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALGRHRENIGHRYIEVFRSSR 181 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHHHHHHhhccceEEeehhHH
Confidence 5568889999999999999999998865555 5677777889999999999999999999864100
Q ss_pred -----cc------------------------CC-----------------C-----------------------------
Q psy300 96 -----KP------------------------YK-----------------G----------------------------- 100 (451)
Q Consensus 96 -----~~------------------------f~-----------------G----------------------------- 100 (451)
.. +. |
T Consensus 182 ~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~d~~~~gs~~~~~~~~~~~ 261 (510)
T KOG4211|consen 182 AEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQDYGNFGSYGGGRDPNYPV 261 (510)
T ss_pred HHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCccccccccccccccccccccCC
Confidence 00 00 0
Q ss_pred ------------------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHh
Q psy300 101 ------------------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 150 (451)
Q Consensus 101 ------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ 150 (451)
..++.++..+|+..-.+ .+.+-..++|+..|-|+|+|.+.++|..|+.+
T Consensus 262 ~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~-~v~i~ig~dGr~TGEAdveF~t~edav~Amsk 340 (510)
T KOG4211|consen 262 SSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPY-RVHIEIGPDGRATGEADVEFATGEDAVGAMGK 340 (510)
T ss_pred CCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCce-eEEEEeCCCCccCCcceeecccchhhHhhhcc
Confidence 15889999999876443 67776778999999999999999999999866
Q ss_pred c
Q psy300 151 S 151 (451)
Q Consensus 151 l 151 (451)
-
T Consensus 341 d 341 (510)
T KOG4211|consen 341 D 341 (510)
T ss_pred C
Confidence 3
No 114
>KOG0153|consensus
Probab=98.06 E-value=6.7e-06 Score=81.56 Aligned_cols=65 Identities=34% Similarity=0.620 Sum_probs=56.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 95 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng 95 (451)
.+.+..-.+|||++|-..+++.+|+++|.+||+|.+++++.. +|+|||+|.+..+|+.|..+.-.
T Consensus 222 pPeD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n 286 (377)
T KOG0153|consen 222 PPEDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFN 286 (377)
T ss_pred CCcccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcc
Confidence 444556789999999889999999999999999999999865 67999999999999999876443
No 115
>KOG0107|consensus
Probab=98.02 E-value=6.2e-06 Score=74.79 Aligned_cols=62 Identities=26% Similarity=0.457 Sum_probs=54.4
Q ss_pred cCCccCCC----CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccC
Q psy300 93 SNKKPYKG----KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158 (451)
Q Consensus 93 lng~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~ 158 (451)
++-++|+| ++++.+|...|..||.+.++.|.+. +.|||||+|+++.+|..|+..||++.+.+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn----PPGfAFVEFed~RDA~DAvr~LDG~~~cG 74 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN----PPGFAFVEFEDPRDAEDAVRYLDGKDICG 74 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec----CCCceEEeccCcccHHHHHhhcCCccccC
Confidence 45577777 4799999999999999999999885 48999999999999999999999987643
No 116
>KOG0113|consensus
Probab=98.00 E-value=8.3e-06 Score=79.45 Aligned_cols=55 Identities=25% Similarity=0.491 Sum_probs=51.2
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
.++|..|+..|+.||.|+.+.+++| .+|+|+|||||+|+..-+...|-...+|.+
T Consensus 112 dT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~ 167 (335)
T KOG0113|consen 112 DTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIK 167 (335)
T ss_pred cccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCce
Confidence 4799999999999999999999999 799999999999999999999998887654
No 117
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.99 E-value=1.8e-05 Score=60.00 Aligned_cols=56 Identities=29% Similarity=0.570 Sum_probs=50.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|+.||.|..+.+..++.+.++|+|||+|.+.++|..|+..+++..+
T Consensus 10 ~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~ 65 (74)
T cd00590 10 DVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKEL 65 (74)
T ss_pred ccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeE
Confidence 47899999999999999999999887667899999999999999999999987653
No 118
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.97 E-value=1.3e-05 Score=76.83 Aligned_cols=53 Identities=15% Similarity=0.367 Sum_probs=46.4
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++|+++|+++|+.||.|.++.++++ +.++|||||+|.++++|..|+ .|+|..+
T Consensus 16 ~tTE~dLrefFS~~G~I~~V~I~~D--~et~gfAfVtF~d~~aaetAl-lLnGa~l 68 (243)
T PLN03121 16 KATEKDVYDFFSHCGAIEHVEIIRS--GEYACTAYVTFKDAYALETAV-LLSGATI 68 (243)
T ss_pred CCCHHHHHHHHHhcCCeEEEEEecC--CCcceEEEEEECCHHHHHHHH-hcCCCee
Confidence 6899999999999999999999987 355789999999999999998 6766543
No 119
>PLN03213 repressor of silencing 3; Provisional
Probab=97.97 E-value=9.4e-06 Score=83.61 Aligned_cols=62 Identities=16% Similarity=0.367 Sum_probs=53.1
Q ss_pred ccCCC----CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecch--HHHHHHHHhcCCCcccCCC
Q psy300 96 KPYKG----KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANK--ISAVKAILKSNKKPYKGSE 160 (451)
Q Consensus 96 ~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~--e~A~~Ai~~ln~riy~~~~ 160 (451)
++|.| .+++++|+..|..||.|.++.|++. +| ||||||+|.+. .++.+||..||+..|.+..
T Consensus 12 RIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~ 79 (759)
T PLN03213 12 RLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGR 79 (759)
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCce
Confidence 45666 4899999999999999999999964 56 99999999987 6899999999998775443
No 120
>KOG1190|consensus
Probab=97.96 E-value=4.5e-05 Score=77.18 Aligned_cols=115 Identities=22% Similarity=0.307 Sum_probs=94.7
Q ss_pred CceEEEcCCC-CCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC----------
Q psy300 32 RGRLFIKNLP-FKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG---------- 100 (451)
Q Consensus 32 ~~~lfVgnLp-~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G---------- 100 (451)
+..|-|.||- ..+|.+-|..+|+-||.|..|+++.++ +--|.|+|.+..+|+.|+..|+|..+.|
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 6788999995 679999999999999999999999863 2459999999999999999988865544
Q ss_pred ----------------------------------------------------CCcHHHHHHHhcccCcceeeEEeeCCCC
Q psy300 101 ----------------------------------------------------KITEEEFKEHFGQYGDIIDAQLLKNADG 128 (451)
Q Consensus 101 ----------------------------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g 128 (451)
+++|++++..|..-|.....-..-.
T Consensus 373 ~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~--- 449 (492)
T KOG1190|consen 373 TNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQ--- 449 (492)
T ss_pred ccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecC---
Confidence 2699999999999887544433221
Q ss_pred CccceEEEEecchHHHHHHHHhcCC
Q psy300 129 KLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 129 ~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
+.+-++.+.+++.|+|..|+..++.
T Consensus 450 kd~kmal~q~~sveeA~~ali~~hn 474 (492)
T KOG1190|consen 450 KDRKMALPQLESVEEAIQALIDLHN 474 (492)
T ss_pred CCcceeecccCChhHhhhhcccccc
Confidence 2266899999999999999988754
No 121
>KOG4208|consensus
Probab=97.96 E-value=8.5e-06 Score=75.73 Aligned_cols=62 Identities=23% Similarity=0.262 Sum_probs=53.5
Q ss_pred CcHHHHHHHhccc-CcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcccCCCCCc
Q psy300 102 ITEEEFKEHFGQY-GDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPYKGSENGL 163 (451)
Q Consensus 102 ~tee~L~~~F~~f-G~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~~~~G~ 163 (451)
+.+.++..+|.+| |.|..+++.++ ++|.|+|||||+|++.+.|.-|.++||..++++.--.+
T Consensus 61 ~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c 124 (214)
T KOG4208|consen 61 FFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLEC 124 (214)
T ss_pred hhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeee
Confidence 4678888888887 77888888787 79999999999999999999999999998887655444
No 122
>KOG0120|consensus
Probab=97.95 E-value=1.5e-05 Score=83.92 Aligned_cols=121 Identities=27% Similarity=0.452 Sum_probs=99.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccC-----------CC-eEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCc
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQY-----------GD-IIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 96 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~-----------G~-I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~ 96 (451)
..+..++||+++|..++++.+-.+|..- |+ +..+.+-. .+.++|++|.+.+.|..|+.. ++.
T Consensus 172 t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~-----~~nfa~ie~~s~~~at~~~~~-~~~ 245 (500)
T KOG0120|consen 172 TRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNL-----EKNFAFIEFRSISEATEAMAL-DGI 245 (500)
T ss_pred hhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeecc-----cccceeEEecCCCchhhhhcc-cch
Confidence 3456899999999999999999999754 33 56666543 378999999999999988742 222
Q ss_pred cCCC--------------------------------------------------CCcHHHHHHHhcccCcceeeEEeeC-
Q psy300 97 PYKG--------------------------------------------------KITEEEFKEHFGQYGDIIDAQLLKN- 125 (451)
Q Consensus 97 ~f~G--------------------------------------------------~~tee~L~~~F~~fG~V~~v~v~~d- 125 (451)
.|.| .+++.++.++.+.||.+....++.+
T Consensus 246 ~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~ 325 (500)
T KOG0120|consen 246 IFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS 325 (500)
T ss_pred hhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc
Confidence 2221 4799999999999999999999998
Q ss_pred CCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 126 ADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 126 ~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
.+|.++||||.+|.+......|+..+||.+
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~ 355 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQ 355 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhh
Confidence 568999999999999999999999998865
No 123
>KOG0151|consensus
Probab=97.92 E-value=1.4e-05 Score=85.51 Aligned_cols=72 Identities=18% Similarity=0.408 Sum_probs=64.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC----CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA----DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~----tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.+..++|||+||++.++++.|...|..||+|.+++++..+ ..+.+-||||.|.+..+|++|+..|+|.++.+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 5567899999999999999999999999999999998765 34567899999999999999999999987764
No 124
>KOG0226|consensus
Probab=97.89 E-value=6e-06 Score=78.84 Aligned_cols=142 Identities=19% Similarity=0.347 Sum_probs=105.5
Q ss_pred CCceEEEcCCCCCCCHHH-H--HHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCC------------
Q psy300 31 KRGRLFIKNLPFKITEEE-F--KEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK------------ 95 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~-L--~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng------------ 95 (451)
..-..+++++-.++..+- | ...|+.+-.....+++++.-+.-++++|+.|.....-.++-..-++
T Consensus 95 ~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~ 174 (290)
T KOG0226|consen 95 AVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAA 174 (290)
T ss_pred ccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeecc
Confidence 345667777766666655 3 6678888778888888887777889999999876655544322221
Q ss_pred -----------------ccCCC----CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCC
Q psy300 96 -----------------KPYKG----KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 96 -----------------~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
++|+| .++++.|...|.+|-.....++++| ++|+++|||||.|.+..++.+|+.+||+
T Consensus 175 gtswedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~g 254 (290)
T KOG0226|consen 175 GTSWEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNG 254 (290)
T ss_pred ccccCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcc
Confidence 23444 3789999999999999999999998 7999999999999999999999999999
Q ss_pred CcccCCCCCc-ccccccCCc
Q psy300 154 KPYKGSENGL-ISPFHDIPL 172 (451)
Q Consensus 154 riy~~~~~G~-iSp~hdiPl 172 (451)
+..-..+..- .|.|....+
T Consensus 255 kyVgsrpiklRkS~wkeRn~ 274 (290)
T KOG0226|consen 255 KYVGSRPIKLRKSEWKERNL 274 (290)
T ss_pred cccccchhHhhhhhHHhhhh
Confidence 8543333222 555655333
No 125
>KOG0126|consensus
Probab=97.84 E-value=1.6e-06 Score=78.87 Aligned_cols=56 Identities=32% Similarity=0.558 Sum_probs=52.0
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+||.+|...|++||.|..+.+++| .+|+|+||||+.|++..+..-|+..+||...
T Consensus 46 ~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki 102 (219)
T KOG0126|consen 46 ELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKI 102 (219)
T ss_pred cccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCcee
Confidence 4799999999999999999999998 7899999999999999999999999988654
No 126
>KOG0116|consensus
Probab=97.84 E-value=2.3e-05 Score=81.44 Aligned_cols=63 Identities=32% Similarity=0.483 Sum_probs=54.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhc
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKS 93 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~l 93 (451)
...+|||+|||.+++.++|.++|++||+|....|.... .+++.+||||+|.+.+.++.|+.+-
T Consensus 287 ~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 287 DGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred cccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 34569999999999999999999999999999886543 5555599999999999999999864
No 127
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.84 E-value=8.2e-05 Score=62.07 Aligned_cols=69 Identities=22% Similarity=0.270 Sum_probs=59.6
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccC--CCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQY--GDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~--G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.+||-++|+|...|.++|.+++... |...-+.++.|. ++.+.|||||.|.+++.|.+-.+.++|+.+..
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~ 72 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPN 72 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcccc
Confidence 4799999999999999998888643 556667888887 88899999999999999999999999987753
No 128
>KOG4210|consensus
Probab=97.83 E-value=1.5e-05 Score=79.37 Aligned_cols=121 Identities=24% Similarity=0.326 Sum_probs=102.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCC---------
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYK--------- 99 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~--------- 99 (451)
...++.|++++..++.+.+...++..+|......+.... ...++|++++.|...+.+..|+.........
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 357899999999999999999999999988888776654 7889999999999999999998753221110
Q ss_pred -------------------------C----CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHH
Q psy300 100 -------------------------G----KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149 (451)
Q Consensus 100 -------------------------G----~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~ 149 (451)
+ .+++++|+.+|..+|.|..++++.+ +++.++|||||.|.....+..++.
T Consensus 166 ~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhh
Confidence 0 3799999999999999999999886 688999999999999999999987
Q ss_pred h
Q psy300 150 K 150 (451)
Q Consensus 150 ~ 150 (451)
.
T Consensus 246 ~ 246 (285)
T KOG4210|consen 246 D 246 (285)
T ss_pred c
Confidence 5
No 129
>KOG4212|consensus
Probab=97.82 E-value=2.5e-05 Score=79.48 Aligned_cols=69 Identities=26% Similarity=0.506 Sum_probs=62.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.++.++|||+|||.+.|++.|++-|..||.|..+.++- .|+++| .|.|.++++|++|+..|+|..+.|+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr 601 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKSKG--VVRFFSPEDAERACALMNGSRLDGR 601 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCccc--eEEecCHHHHHHHHHHhccCcccCc
Confidence 45678999999999999999999999999999998843 588887 8999999999999999999988874
No 130
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.80 E-value=3.6e-05 Score=73.18 Aligned_cols=62 Identities=31% Similarity=0.584 Sum_probs=56.0
Q ss_pred CccCCC----CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 95 KKPYKG----KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
..+|.| .+++++|+++|.+||.+..+.+..+ .++.++|||||+|.+.++|..|+..+++..+
T Consensus 116 ~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~ 182 (306)
T COG0724 116 NTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKEL 182 (306)
T ss_pred ceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeE
Confidence 556666 4899999999999999999999998 4899999999999999999999999997665
No 131
>KOG0121|consensus
Probab=97.80 E-value=4.3e-05 Score=66.08 Aligned_cols=73 Identities=25% Similarity=0.278 Sum_probs=59.1
Q ss_pred cHHHHHHHHHhcCCccCCCC----CcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 82 NKISAVKAILKSNKKPYKGK----ITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 82 ~~~~A~~Al~~lng~~f~G~----~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
+.++...|+... ..+|.|+ ++|++|.++|+++|.|..+.+--|+ +..+.||+||+|.+.++|..|+.-+++..
T Consensus 25 t~~e~~~a~r~S-~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~Alryisgtr 102 (153)
T KOG0121|consen 25 TDEEQLEALRKS-CTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTR 102 (153)
T ss_pred chHHHHHHHhhc-ceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCc
Confidence 555666676543 3567775 7999999999999999998886664 45689999999999999999999887653
No 132
>COG0221 Ppa Inorganic pyrophosphatase [Energy production and conversion]
Probab=97.76 E-value=2.5e-05 Score=71.64 Aligned_cols=51 Identities=33% Similarity=0.457 Sum_probs=41.4
Q ss_pred CCccCCCccccCCCCEEEEEEeecCCCccceeeeccccceEEEEEeeCCCCchhh
Q psy300 386 SPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGNAMEMRLYLVCFNLPSPLGYL 440 (451)
Q Consensus 386 s~~hd~~l~~~~~~~~~~~~~e~p~~~~~k~e~~~~~~~~~~~~~~~~~~~~~~~ 440 (451)
|+||+||+.++. ..+|||+|||+||+.|.|+.++...... ---|.++++|.
T Consensus 1 ~~~~~~~~~~~~--~~i~vviEIP~~s~~KyE~dk~~~~~~v--dR~l~~~~~YP 51 (171)
T COG0221 1 MDLHKIPAGPDD--EDINVVIEIPKGSNIKYEVDKETGRLLV--DRPLKTPMGYP 51 (171)
T ss_pred CCccccCCCCCc--ceEEEEEeccCCCccceEEeeecCceee--eecCCCCCcCC
Confidence 689999999887 4999999999999999999999877653 33455555553
No 133
>KOG4660|consensus
Probab=97.71 E-value=3.1e-05 Score=81.18 Aligned_cols=71 Identities=23% Similarity=0.447 Sum_probs=61.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.+.....++|+|-|||..+++++|+.+|+.||+|..++.. -..+|..||+|.+..+|++|++++++..+.|
T Consensus 69 ~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t----~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~ 139 (549)
T KOG4660|consen 69 SEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET----PNKRGIVFVEFYDVRDAERALKALNRREIAG 139 (549)
T ss_pred CcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc----cccCceEEEEEeehHhHHHHHHHHHHHHhhh
Confidence 3345678999999999999999999999999999997653 3457899999999999999999998866544
No 134
>KOG0111|consensus
Probab=97.69 E-value=1.9e-05 Score=73.93 Aligned_cols=64 Identities=30% Similarity=0.494 Sum_probs=55.5
Q ss_pred CccCCC----CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcccC
Q psy300 95 KKPYKG----KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~ 158 (451)
+.+|.| .+++.-|...|-+||.|..+.++.| .+++.||||||+|...|+|.+||..||..-.++
T Consensus 11 rtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G 79 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG 79 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc
Confidence 345666 4788889999999999999999998 788999999999999999999999999765543
No 135
>KOG0130|consensus
Probab=97.66 E-value=5.1e-05 Score=66.15 Aligned_cols=57 Identities=28% Similarity=0.438 Sum_probs=51.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCccc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPYK 157 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~ 157 (451)
..+++++.+.|..||.|..+.+-.| ++|-.+|||.|+|++.++|+.|+..+|+.-.+
T Consensus 83 EatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll 140 (170)
T KOG0130|consen 83 EATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELL 140 (170)
T ss_pred chhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhh
Confidence 4699999999999999999999766 78999999999999999999999999976543
No 136
>KOG0112|consensus
Probab=97.63 E-value=3.8e-05 Score=84.24 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=103.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC--------
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK-------- 99 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~-------- 99 (451)
+...+++||+|||+..+++.+|+..|..+|.|.+|.+-+-.-+.-.-|+||.|.+...+-.|...+.+..+.
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 456789999999999999999999999999999999866544444568999999999988888776654332
Q ss_pred C-----------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 100 G-----------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 100 G-----------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
| .+....|...|..||.|..+.+-.. .-|+||.|++...|+.|...+-+..+
T Consensus 448 G~~kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----q~yayi~yes~~~aq~a~~~~rgap~ 516 (975)
T KOG0112|consen 448 GQPKSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----QPYAYIQYESPPAAQAATHDMRGAPL 516 (975)
T ss_pred cccccccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----CcceeeecccCccchhhHHHHhcCcC
Confidence 1 2577899999999999998877543 45999999999999999999987764
No 137
>KOG4209|consensus
Probab=97.60 E-value=8.2e-05 Score=71.82 Aligned_cols=75 Identities=17% Similarity=0.307 Sum_probs=68.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCCCc
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGKIT 103 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~~t 103 (451)
.......+||+|+.+.++.+++...|+.+|.|..+.+..|. +|.++||+||+|.+.+.+..|+. |++..+.|..+
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i 172 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAI 172 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccc
Confidence 45567899999999999999999999999999999999998 77899999999999999999999 99998887443
No 138
>KOG0108|consensus
Probab=97.56 E-value=0.0001 Score=77.12 Aligned_cols=62 Identities=26% Similarity=0.468 Sum_probs=56.5
Q ss_pred CccCCC----CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 95 KKPYKG----KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
..+|.| .+++++|.++|+..|.|.+++++.| ++|+++||||++|.+.+.|..|+..+|+..+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~ 85 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEF 85 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCccc
Confidence 455666 4799999999999999999999998 6899999999999999999999999998776
No 139
>KOG1456|consensus
Probab=97.55 E-value=0.001 Score=66.82 Aligned_cols=123 Identities=18% Similarity=0.324 Sum_probs=100.0
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC------
Q psy300 28 DKTKRGRLFIKNLPFK-ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG------ 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~-vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------ 100 (451)
...+.+-+.|-+|... +.-+.|.++|=.||.|..|++++.+ .|-|.|++.+....++|+..||+..+.|
T Consensus 283 g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~ 358 (494)
T KOG1456|consen 283 GGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVC 358 (494)
T ss_pred CCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----cceeEEEcCcHHHHHHHHHHhccCccccceEEEe
Confidence 3456788899999865 5567899999999999999999864 4579999999999999999998765433
Q ss_pred ----------------------------------------------------------CCcHHHHHHHhcccCc-ceeeE
Q psy300 101 ----------------------------------------------------------KITEEEFKEHFGQYGD-IIDAQ 121 (451)
Q Consensus 101 ----------------------------------------------------------~~tee~L~~~F~~fG~-V~~v~ 121 (451)
.+||++|..+|...+. -.+++
T Consensus 359 ~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek~v~~~svk 438 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEKDVPPTSVK 438 (494)
T ss_pred eccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhcCCCcceEE
Confidence 2699999999987665 56777
Q ss_pred EeeCCCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 122 LLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 122 v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
+...++.+| --|.++|++.++|..|+..+|+..
T Consensus 439 vFp~kserS-ssGllEfe~~s~Aveal~~~NH~p 471 (494)
T KOG1456|consen 439 VFPLKSERS-SSGLLEFENKSDAVEALMKLNHYP 471 (494)
T ss_pred eeccccccc-ccceeeeehHHHHHHHHHHhcccc
Confidence 766555543 347999999999999999999854
No 140
>KOG0415|consensus
Probab=97.31 E-value=0.00017 Score=71.87 Aligned_cols=54 Identities=24% Similarity=0.490 Sum_probs=50.5
Q ss_pred CcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 102 ITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 102 ~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
+|+++|.-+|+.||.|.+|.|++| ++|.|-.||||+|++.+++.+|.-+|+..+
T Consensus 251 TtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvL 305 (479)
T KOG0415|consen 251 TTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVL 305 (479)
T ss_pred ccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhccee
Confidence 689999999999999999999998 789999999999999999999999987644
No 141
>KOG0114|consensus
Probab=97.23 E-value=0.00058 Score=57.11 Aligned_cols=53 Identities=30% Similarity=0.456 Sum_probs=46.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
++|.++..++|.+||.|..+++-..+ ..+|-|||.|++..+|.+|+..++|.-
T Consensus 29 ~ITseemydlFGkyg~IrQIRiG~~k--~TrGTAFVVYedi~dAk~A~dhlsg~n 81 (124)
T KOG0114|consen 29 KITSEEMYDLFGKYGTIRQIRIGNTK--ETRGTAFVVYEDIFDAKKACDHLSGYN 81 (124)
T ss_pred cccHHHHHHHhhcccceEEEEecCcc--CcCceEEEEehHhhhHHHHHHHhcccc
Confidence 58999999999999999999996543 348999999999999999999998753
No 142
>KOG0132|consensus
Probab=97.05 E-value=0.00051 Score=74.57 Aligned_cols=53 Identities=28% Similarity=0.604 Sum_probs=47.2
Q ss_pred CccCCC----CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcC
Q psy300 95 KKPYKG----KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
.++|.| ++++.+|.++|+.||.|.++.+... +|||||.+.++.+|.+|+.+|+
T Consensus 422 rTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~-----R~cAfI~M~~RqdA~kalqkl~ 478 (894)
T KOG0132|consen 422 RTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPP-----RGCAFIKMVRRQDAEKALQKLS 478 (894)
T ss_pred eeeeeccccchhhHHHHHHHHHhcccceeEeeccC-----CceeEEEEeehhHHHHHHHHHh
Confidence 345555 5799999999999999999999765 8999999999999999999987
No 143
>cd00412 pyrophosphatase Inorganic pyrophosphatase. These enzymes hydrolyze inorganic pyrophosphate (PPi) to two molecules of orthophosphates (Pi). The reaction requires bivalent cations. The enzymes in general exist as homooligomers.
Probab=97.01 E-value=0.00049 Score=62.32 Aligned_cols=24 Identities=38% Similarity=0.654 Sum_probs=21.8
Q ss_pred CEEEEEEeecCCCccceeeecccc
Q psy300 400 KIFNMVVEIPRWTNAKMEVGNAME 423 (451)
Q Consensus 400 ~~~~~~~e~p~~~~~k~e~~~~~~ 423 (451)
.++||||||||||++|+|+.+++.
T Consensus 1 ~~v~vvIEIP~gs~~KyE~d~~~g 24 (155)
T cd00412 1 EVVNVVIEIPKGSNAKYEIDKETG 24 (155)
T ss_pred CEEEEEEEECCCCceeEEEccCCC
Confidence 369999999999999999999874
No 144
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=96.98 E-value=0.0014 Score=65.03 Aligned_cols=103 Identities=23% Similarity=0.408 Sum_probs=71.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHH------HHHhccCCCeEEEEEeECC-CCCc-ee-E-EEEEEccHHHHHHHHHhcCCcc
Q psy300 28 DKTKRGRLFIKNLPFKITEEEF------KEHFGQYGDIIDAQLLKNA-DGKL-KG-C-GFINYANKISAVKAILKSNKKP 97 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L------~~~F~~~G~I~~i~l~~d~-tg~s-kG-~-aFV~F~~~~~A~~Al~~lng~~ 97 (451)
+-....-+||-+||+.+-.++. .++|.+||.|..|.+-+.. +-.+ .+ + .||.|.+.++|.+|+.+.+|..
T Consensus 110 RVvQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~ 189 (480)
T COG5175 110 RVVQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSL 189 (480)
T ss_pred eeeecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccc
Confidence 3445678899999998877763 6799999999988875542 1111 22 3 3999999999999999999999
Q ss_pred CCCCCcHHHHHHHhcccCcceeeEE-eeCCCCCccceEEEE
Q psy300 98 YKGKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFIN 137 (451)
Q Consensus 98 f~G~~tee~L~~~F~~fG~V~~v~v-~~d~~g~srG~gFV~ 137 (451)
+.|++- =..||...+|.. +++..-.+..|.|+.
T Consensus 190 ~DGr~l-------katYGTTKYCtsYLRn~~CpNp~CMyLH 223 (480)
T COG5175 190 LDGRVL-------KATYGTTKYCTSYLRNAVCPNPDCMYLH 223 (480)
T ss_pred ccCceE-------eeecCchHHHHHHHcCCCCCCCCeeeec
Confidence 998532 134777777665 333322334455554
No 145
>KOG2193|consensus
Probab=96.97 E-value=0.0003 Score=71.56 Aligned_cols=118 Identities=22% Similarity=0.303 Sum_probs=90.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCcc-CCC----------
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP-YKG---------- 100 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~-f~G---------- 100 (451)
++.+|++||.+.++.++|..+|...-.-.+-.++. ..||+||.+.+...|.+|++.++|+. +.|
T Consensus 1 mnklyignL~p~~~psdl~svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 1 MNKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CCcccccccCCCCChHHHHHHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 35799999999999999999998552211222221 26899999999999999999988864 333
Q ss_pred ---------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ---------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ---------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
...++-|..+..+||.++.|..+...+. ....-|+|.+.+.+..|+.+++|-++
T Consensus 76 kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~e--tavvnvty~~~~~~~~ai~kl~g~Q~ 144 (584)
T KOG2193|consen 76 KKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSE--TAVVNVTYSAQQQHRQAIHKLNGPQL 144 (584)
T ss_pred HHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchH--HHHHHHHHHHHHHHHHHHHhhcchHh
Confidence 1467888889999999999998653221 23345889999999999999998664
No 146
>KOG4206|consensus
Probab=96.96 E-value=0.0015 Score=61.82 Aligned_cols=57 Identities=28% Similarity=0.532 Sum_probs=47.5
Q ss_pred CcHHHHHH----HhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccCCC
Q psy300 102 ITEEEFKE----HFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160 (451)
Q Consensus 102 ~tee~L~~----~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~~~ 160 (451)
+..++|+. +|++||.|..+...+ +.+.||.|||.|.+.+.|..|+..++|..|++.+
T Consensus 21 I~~~elkrsL~~LFsqfG~ildI~a~k--t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~ 81 (221)
T KOG4206|consen 21 IKKDELKRSLYLLFSQFGKILDISAFK--TPKMRGQAFVVFKETEAASAALRALQGFPFYGKP 81 (221)
T ss_pred ccHHHHHHHHHHHHHhhCCeEEEEecC--CCCccCceEEEecChhHHHHHHHHhcCCcccCch
Confidence 45555555 999999999888875 4577999999999999999999999998776543
No 147
>KOG0105|consensus
Probab=96.94 E-value=0.00094 Score=61.32 Aligned_cols=55 Identities=25% Similarity=0.434 Sum_probs=47.1
Q ss_pred CCCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 100 GKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 100 G~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
+.+.+.+++++|.+||.|..+.+-..+ .+.+||||+|+++.+|..||...++.-|
T Consensus 16 ~diRekeieDlFyKyg~i~~ieLK~r~--g~ppfafVeFEd~RDAeDAiygRdGYdy 70 (241)
T KOG0105|consen 16 GDIREKEIEDLFYKYGRIREIELKNRP--GPPPFAFVEFEDPRDAEDAIYGRDGYDY 70 (241)
T ss_pred cchhhccHHHHHhhhcceEEEEeccCC--CCCCeeEEEecCccchhhhhhccccccc
Confidence 357899999999999999999885432 2367999999999999999999988665
No 148
>KOG1457|consensus
Probab=96.92 E-value=0.0008 Score=63.45 Aligned_cols=69 Identities=20% Similarity=0.276 Sum_probs=56.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 99 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~ 99 (451)
..+..++|||.||..+++|++|+.+|+.|-....+++ +.+.| ...||++|++.+.|..|+..++|..+.
T Consensus 206 ~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~-~~~~g--~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 206 GARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKI-RARGG--MPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred cchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEE-ecCCC--cceEeecHHHHHHHHHHHHHhhcceec
Confidence 3446789999999999999999999999977655555 33344 357999999999999999999887653
No 149
>KOG0153|consensus
Probab=96.84 E-value=0.0011 Score=66.19 Aligned_cols=51 Identities=35% Similarity=0.658 Sum_probs=45.2
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++++.+|+++|.+||.|+++.++.. +++|||+|+++++|..|..++-.++.
T Consensus 239 ~v~e~dIrdhFyqyGeirsi~~~~~-----~~CAFv~ftTR~aAE~Aae~~~n~lv 289 (377)
T KOG0153|consen 239 EVLEQDIRDHFYQYGEIRSIRILPR-----KGCAFVTFTTREAAEKAAEKSFNKLV 289 (377)
T ss_pred chhHHHHHHHHhhcCCeeeEEeecc-----cccceeeehhhHHHHHHHHhhcceee
Confidence 5899999999999999999999876 67999999999999999988755443
No 150
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.66 E-value=0.0034 Score=53.23 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=37.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcC
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~ln 94 (451)
+-|.+.+++..++.++|++.|++||.|..|.+.+. -..|+|.|.+++.|++|+..+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHH
Confidence 45888999999999999999999999999888643 3368999999999999998654
No 151
>KOG4661|consensus
Probab=96.65 E-value=0.0018 Score=68.14 Aligned_cols=54 Identities=20% Similarity=0.440 Sum_probs=46.7
Q ss_pred CcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 102 ITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 102 ~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
+.-.+|+.+|++||.|.-++|+.+ ++--.+.||||++.+.++|.+||..|+..-
T Consensus 417 TRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTE 471 (940)
T KOG4661|consen 417 TRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTE 471 (940)
T ss_pred hhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhh
Confidence 456899999999999999999987 444468899999999999999999987543
No 152
>KOG1365|consensus
Probab=96.41 E-value=0.02 Score=58.03 Aligned_cols=120 Identities=19% Similarity=0.326 Sum_probs=86.1
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeE-CCCCCceeEEEEEEccHHHHHHHHHhcC----Cc----------
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLK-NADGKLKGCGFINYANKISAVKAILKSN----KK---------- 96 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~-d~tg~skG~aFV~F~~~~~A~~Al~~ln----g~---------- 96 (451)
+.-+-.++||...++.++-.+|...--..-.+.+. +..|+.-|.+.|.|.+++.-..|++.-. +.
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~qgrRnge~lvrf~d~e~RdlalkRhkhh~g~ryievYka~ge 139 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNAQGRRNGEALVRFVDPEGRDLALKRHKHHMGTRYIEVYKATGE 139 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehhhhccccceEEEecCchhhhhhhHhhhhhccCCceeeeccCch
Confidence 34455679999999999999997542111112222 2267777899999999988888876411 10
Q ss_pred cC---C----------------------C---CCcHHHHHHHhcc----cCcceeeEEeeCCCCCccceEEEEecchHHH
Q psy300 97 PY---K----------------------G---KITEEEFKEHFGQ----YGDIIDAQLLKNADGKLKGCGFINYANKISA 144 (451)
Q Consensus 97 ~f---~----------------------G---~~tee~L~~~F~~----fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A 144 (451)
.| . | .+++.++.++|.+ -|.++.+-+++..+|+..|-|||.|..+++|
T Consensus 140 ~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~a 219 (508)
T KOG1365|consen 140 EFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDA 219 (508)
T ss_pred hheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHH
Confidence 00 0 0 3799999999953 2346677777778999999999999999999
Q ss_pred HHHHHhc
Q psy300 145 VKAILKS 151 (451)
Q Consensus 145 ~~Ai~~l 151 (451)
+.|+.+.
T Consensus 220 q~aL~kh 226 (508)
T KOG1365|consen 220 QFALRKH 226 (508)
T ss_pred HHHHHHH
Confidence 9999774
No 153
>KOG3152|consensus
Probab=96.19 E-value=0.0069 Score=58.33 Aligned_cols=70 Identities=23% Similarity=0.390 Sum_probs=60.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-C--------CCceeE----EEEEEccHHHHHHHHHhcCCcc
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-D--------GKLKGC----GFINYANKISAVKAILKSNKKP 97 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-t--------g~skG~----aFV~F~~~~~A~~Al~~lng~~ 97 (451)
.+.-||+++||+.+...-|+++|++||.|-.|.|-... + |.++++ |.|+|.+...|.++...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 67899999999999999999999999999999886653 3 333332 6789999999999999999998
Q ss_pred CCC
Q psy300 98 YKG 100 (451)
Q Consensus 98 f~G 100 (451)
+.|
T Consensus 153 Igg 155 (278)
T KOG3152|consen 153 IGG 155 (278)
T ss_pred cCC
Confidence 887
No 154
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.18 E-value=0.013 Score=47.38 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=41.3
Q ss_pred ceEEEcCCCCCCCHHHH----HHHhccCC-CeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 33 GRLFIKNLPFKITEEEF----KEHFGQYG-DIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L----~~~F~~~G-~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
+.|||.|||.+.+...+ +.++..+| .|.++. .+.|+|.|.+++.|.+|...|+|....|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~---------~~tAilrF~~~~~A~RA~KRmegEdVfG 66 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS---------GGTAILRFPNQEFAERAQKRMEGEDVFG 66 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSS
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe---------CCEEEEEeCCHHHHHHHHHhhccccccc
Confidence 57999999999888765 56677776 466552 4679999999999999999999875555
No 155
>KOG1995|consensus
Probab=96.12 E-value=0.0092 Score=60.05 Aligned_cols=82 Identities=23% Similarity=0.318 Sum_probs=69.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIID--------AQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 98 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~--------i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f 98 (451)
......++||-+||..+++++|.++|.++|.|.. |.+-+++ |+.+||-|.|.|.+...|+.|+.-++++.|
T Consensus 62 ~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 62 DKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 3556789999999999999999999999998843 5556666 999999999999999999999999999999
Q ss_pred CCCCcHHHHHH
Q psy300 99 KGKITEEEFKE 109 (451)
Q Consensus 99 ~G~~tee~L~~ 109 (451)
.|++...-+.+
T Consensus 142 ~gn~ikvs~a~ 152 (351)
T KOG1995|consen 142 CGNTIKVSLAE 152 (351)
T ss_pred cCCCchhhhhh
Confidence 99654443333
No 156
>KOG4676|consensus
Probab=96.10 E-value=0.0044 Score=62.83 Aligned_cols=115 Identities=16% Similarity=0.230 Sum_probs=84.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC----CCCceeEEEEEEccHHHHHHHHHhcCCccCCC--------
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA----DGKLKGCGFINYANKISAVKAILKSNKKPYKG-------- 100 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~----tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G-------- 100 (451)
.-|-|.||.++++.++++.+|.-.|.|.+++|+... -......|||.|.+...+..|- .|.+.+|.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 478899999999999999999999999999997643 1244678999999988776653 333332221
Q ss_pred ---------------------------------------------------------------------------CCcHH
Q psy300 101 ---------------------------------------------------------------------------KITEE 105 (451)
Q Consensus 101 ---------------------------------------------------------------------------~~tee 105 (451)
.+...
T Consensus 87 ~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l~ 166 (479)
T KOG4676|consen 87 GDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAILP 166 (479)
T ss_pred CCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcch
Confidence 14567
Q ss_pred HHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhc
Q psy300 106 EFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 151 (451)
Q Consensus 106 ~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~l 151 (451)
++-+.|+.+|.|.+..+.... ..-++-+.|....+...|+...
T Consensus 167 e~~e~f~r~Gev~ya~~ask~---~s~~c~~sf~~qts~~halr~~ 209 (479)
T KOG4676|consen 167 ESGESFERKGEVSYAHTASKS---RSSSCSHSFRKQTSSKHALRSH 209 (479)
T ss_pred hhhhhhhhcchhhhhhhhccC---CCcchhhhHhhhhhHHHHHHhc
Confidence 888999999999988775432 2334558888877777776554
No 157
>KOG2314|consensus
Probab=96.07 E-value=0.0072 Score=63.86 Aligned_cols=71 Identities=21% Similarity=0.267 Sum_probs=58.9
Q ss_pred CCCceEEEcCCCCCCC--H----HHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKIT--E----EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vt--e----~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.-.+.|+|.|+|.-=. - .-|.++|+++|++....++.+..|.++||.|++|.+..+|+.|++.+||+.+.-
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 3467899999985321 1 236789999999999999888866699999999999999999999999987754
No 158
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=95.88 E-value=0.016 Score=42.92 Aligned_cols=52 Identities=25% Similarity=0.503 Sum_probs=41.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHH
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al 90 (451)
+.|-|.|.+.+.. +.+...|.+||+|.++.+. ...-..+|.|.+..+|++|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~-----~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP-----ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC-----CCCcEEEEEECCHHHHHhhC
Confidence 4577888887755 4556699999999998875 23458999999999999985
No 159
>KOG1548|consensus
Probab=95.85 E-value=0.03 Score=56.17 Aligned_cols=71 Identities=15% Similarity=0.333 Sum_probs=56.7
Q ss_pred CCCCCceEEEcCC--CC--CCC-------HHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCc
Q psy300 28 DKTKRGRLFIKNL--PF--KIT-------EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 96 (451)
Q Consensus 28 ~~~~~~~lfVgnL--p~--~vt-------e~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~ 96 (451)
..+..++|.++|+ |. ..+ .++|++-.++||+|.+|.+.- ..+.|.+-|.|.+.++|..|++.|+|+
T Consensus 261 k~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d---~hPdGvvtV~f~n~eeA~~ciq~m~GR 337 (382)
T KOG1548|consen 261 KARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD---RHPDGVVTVSFRNNEEADQCIQTMDGR 337 (382)
T ss_pred cccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec---cCCCceeEEEeCChHHHHHHHHHhcCe
Confidence 4456789999998 22 233 245667789999999998853 456789999999999999999999999
Q ss_pred cCCCC
Q psy300 97 PYKGK 101 (451)
Q Consensus 97 ~f~G~ 101 (451)
.|.|+
T Consensus 338 ~fdgR 342 (382)
T KOG1548|consen 338 WFDGR 342 (382)
T ss_pred eecce
Confidence 99884
No 160
>KOG4210|consensus
Probab=95.79 E-value=0.0072 Score=60.29 Aligned_cols=64 Identities=25% Similarity=0.501 Sum_probs=57.4
Q ss_pred CCCCceEE-EcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHh
Q psy300 29 KTKRGRLF-IKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILK 92 (451)
Q Consensus 29 ~~~~~~lf-VgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~ 92 (451)
.....++| |++|+.++++++|+..|..+|.|..+++..++ ++.++|||++.|.+...+..++..
T Consensus 181 ~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 181 SGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 33455666 99999999999999999999999999998887 999999999999999999888875
No 161
>KOG0106|consensus
Probab=95.44 E-value=0.011 Score=56.37 Aligned_cols=66 Identities=21% Similarity=0.473 Sum_probs=57.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
....+.+.|.+++..+.+.+|.+.|.++|.+.+... ..+++||+|...++|.+|+..++++.+.|.
T Consensus 96 ~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~ 161 (216)
T KOG0106|consen 96 SRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------RRNFAFVEFSEQEDAKRALEKLDGKKLNGR 161 (216)
T ss_pred ccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------hccccceeehhhhhhhhcchhccchhhcCc
Confidence 456789999999999999999999999999855444 367899999999999999999999877663
No 162
>KOG0533|consensus
Probab=95.33 E-value=0.023 Score=55.22 Aligned_cols=53 Identities=19% Similarity=0.397 Sum_probs=50.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
.+++++|+++|..||.+..+-+..++.|.|.|.|=|.|...++|.+|+..+++
T Consensus 94 ~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~g 146 (243)
T KOG0533|consen 94 GVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNG 146 (243)
T ss_pred CcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcC
Confidence 57999999999999999999999999999999999999999999999999988
No 163
>KOG4849|consensus
Probab=95.25 E-value=0.013 Score=58.55 Aligned_cols=69 Identities=16% Similarity=0.290 Sum_probs=61.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCC--eEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYGD--IIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G~--I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.-.+|||||-.-+|++||.+.....|- +.++++.-++ +|.|||||+|...+...+++-++.|-.+.++|
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHG 151 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHG 151 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecC
Confidence 457899999999999999999988874 7788888777 89999999999999999999999999888888
No 164
>KOG0129|consensus
Probab=95.18 E-value=0.05 Score=57.24 Aligned_cols=67 Identities=22% Similarity=0.353 Sum_probs=60.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhc-cCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHh
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFG-QYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILK 92 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~-~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~ 92 (451)
...-.+.+|||||+||.-++-++|-.+|+ -||.|..+-|=+|+ -+.++|-|=|.|.+..+-.+||.+
T Consensus 364 sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 364 NQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 33455789999999999999999999999 89999999998885 788999999999999999999875
No 165
>KOG0115|consensus
Probab=95.16 E-value=0.025 Score=54.67 Aligned_cols=71 Identities=23% Similarity=0.357 Sum_probs=62.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....|||.||+.-++.+.+..-|+.||+|....+..|..+++.|-++|.|...-.|.+|....+-.-|.+
T Consensus 29 a~~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~ 99 (275)
T KOG0115|consen 29 AMHAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGG 99 (275)
T ss_pred eccceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCcccc
Confidence 34489999999999999999999999999999888888888889999999999999999998876555554
No 166
>KOG2314|consensus
Probab=95.07 E-value=0.026 Score=59.75 Aligned_cols=54 Identities=26% Similarity=0.368 Sum_probs=48.7
Q ss_pred HHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccC
Q psy300 105 EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158 (451)
Q Consensus 105 e~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~ 158 (451)
.-|..+|+++|.+....++.++.|.++||.|++|.+..+|+.|+.++||+.+..
T Consensus 79 ~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldk 132 (698)
T KOG2314|consen 79 KVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDK 132 (698)
T ss_pred HHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecc
Confidence 567889999999999999988878899999999999999999999999987543
No 167
>KOG1855|consensus
Probab=95.05 E-value=0.024 Score=58.21 Aligned_cols=70 Identities=24% Similarity=0.359 Sum_probs=58.0
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeEC---C---CCC--------ceeEEEEEEccHHHHHHHH
Q psy300 25 KKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN---A---DGK--------LKGCGFINYANKISAVKAI 90 (451)
Q Consensus 25 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d---~---tg~--------skG~aFV~F~~~~~A~~Al 90 (451)
......+.++|.+-|||.+-.-+.|.++|+.+|.|.+|++..- + .+. .+-+|+|+|...+.|.+|.
T Consensus 224 ~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~ 303 (484)
T KOG1855|consen 224 FDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKAR 303 (484)
T ss_pred ccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHH
Confidence 3444457899999999999999999999999999999999765 2 222 2567899999999999998
Q ss_pred HhcC
Q psy300 91 LKSN 94 (451)
Q Consensus 91 ~~ln 94 (451)
+.++
T Consensus 304 e~~~ 307 (484)
T KOG1855|consen 304 ELLN 307 (484)
T ss_pred Hhhc
Confidence 8774
No 168
>KOG0116|consensus
Probab=94.85 E-value=0.032 Score=58.34 Aligned_cols=51 Identities=29% Similarity=0.453 Sum_probs=44.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEee-CCCCCccceEEEEecchHHHHHHHHhc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLK-NADGKLKGCGFINYANKISAVKAILKS 151 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~-d~~g~srG~gFV~F~s~e~A~~Ai~~l 151 (451)
+++..+|+++|+.||.|+...|.. ...+++..||||+|.+.++++.|+.+.
T Consensus 299 da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As 350 (419)
T KOG0116|consen 299 DATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS 350 (419)
T ss_pred CCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC
Confidence 579999999999999999999965 345555699999999999999999886
No 169
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=94.82 E-value=0.037 Score=46.89 Aligned_cols=47 Identities=23% Similarity=0.461 Sum_probs=31.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
.++.++|++.|++||.|.+|.+.+. -.-|||.|.+.++|+.|+..+.
T Consensus 12 ~~~re~iK~~f~~~g~V~yVD~~~G-----~~~g~VRf~~~~~A~~a~~~~~ 58 (105)
T PF08777_consen 12 PTSREDIKEAFSQFGEVAYVDFSRG-----DTEGYVRFKTPEAAQKALEKLK 58 (105)
T ss_dssp S--HHHHHHHT-SS--EEEEE--TT------SEEEEEESS---HHHHHHHHH
T ss_pred CcCHHHHHHHHHhcCCcceEEecCC-----CCEEEEEECCcchHHHHHHHHH
Confidence 5788999999999999999999875 2358999999999999998874
No 170
>KOG4454|consensus
Probab=94.70 E-value=0.059 Score=51.03 Aligned_cols=59 Identities=22% Similarity=0.241 Sum_probs=52.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccCCC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~~~ 160 (451)
.++++-|.++|-+-|.|..+.|+.++.+..+ ||||.|.++.+..-|++.+||--.+..+
T Consensus 20 ~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e 78 (267)
T KOG4454|consen 20 GVSEELLSELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDE 78 (267)
T ss_pred hhhHHHHHHHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhccch
Confidence 5899999999999999999999998888877 9999999999999999999986655444
No 171
>KOG4307|consensus
Probab=94.57 E-value=0.083 Score=57.36 Aligned_cols=72 Identities=21% Similarity=0.339 Sum_probs=61.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeE-EEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDII-DAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 99 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~-~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~ 99 (451)
.....+-|-+.|+|++++-+||.+||..|-.+- +|.+.++..|...|-|-|.|++.++|.+|...++++.+.
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~ 935 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMDLDGQKIR 935 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhccccCccc
Confidence 444556788999999999999999999997653 567777779999999999999999999999998886543
No 172
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=94.25 E-value=0.19 Score=40.73 Aligned_cols=54 Identities=13% Similarity=0.286 Sum_probs=40.5
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcC
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~ln 94 (451)
.-.||+ +|..+...||..+|+.||.|. |..+.| .-|||...+.+.|..|+..+.
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------TEEEEEECCCHHHHHHHHHHT
T ss_pred eEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------CcEEEEeecHHHHHHHHHHhc
Confidence 445565 999999999999999999974 655544 359999999999999887765
No 173
>KOG4307|consensus
Probab=94.25 E-value=0.036 Score=60.03 Aligned_cols=120 Identities=13% Similarity=0.149 Sum_probs=89.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCC----ccC-------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNK----KPY------- 98 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng----~~f------- 98 (451)
..+.+-+++.+.+.+..+++++|... .|.+..|..+. .+...|.++|.|....++++|+..-+- ..|
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~rn~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTRNPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hhheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhcCchhhhhcceeecCCCc
Confidence 34566677999999999999999744 35666666665 333478899999999999999864210 000
Q ss_pred ------------C---------C---------------------------------CCcHHHHHHHhcccCccee-eEEe
Q psy300 99 ------------K---------G---------------------------------KITEEEFKEHFGQYGDIID-AQLL 123 (451)
Q Consensus 99 ------------~---------G---------------------------------~~tee~L~~~F~~fG~V~~-v~v~ 123 (451)
. | .+++.++.+.|+.--.|++ +.+.
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 0 0 2688899999988767777 5666
Q ss_pred eCCCCCccceEEEEecchHHHHHHHHhc
Q psy300 124 KNADGKLKGCGFINYANKISAVKAILKS 151 (451)
Q Consensus 124 ~d~~g~srG~gFV~F~s~e~A~~Ai~~l 151 (451)
+.++++.++.|||.|..++++..|..-.
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~ 496 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVK 496 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcc
Confidence 6688899999999999988888776544
No 174
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.06 E-value=0.07 Score=39.44 Aligned_cols=40 Identities=30% Similarity=0.590 Sum_probs=33.5
Q ss_pred HHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHH
Q psy300 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 148 (451)
Q Consensus 104 ee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai 148 (451)
.+.+..+|..||.|....+... ..+.||.|.++.+|.+|+
T Consensus 14 ~~~vl~~F~~fGeI~~~~~~~~-----~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 14 AEEVLEHFASFGEIVDIYVPES-----TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred HHHHHHHHHhcCCEEEEEcCCC-----CcEEEEEECCHHHHHhhC
Confidence 3667789999999999888632 568999999999999985
No 175
>KOG4209|consensus
Probab=93.86 E-value=0.061 Score=52.03 Aligned_cols=54 Identities=19% Similarity=0.296 Sum_probs=47.0
Q ss_pred CcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 102 ITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 102 ~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
+|.+++..+|+.||.+..+.++.|. .+.++||+||+|.+.+.+..|+. +|+..+
T Consensus 113 ~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i 167 (231)
T KOG4209|consen 113 VTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEI 167 (231)
T ss_pred cccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccc
Confidence 4556699999999999999999885 45799999999999999999998 887654
No 176
>KOG0128|consensus
Probab=93.82 E-value=0.022 Score=62.93 Aligned_cols=74 Identities=20% Similarity=0.268 Sum_probs=64.4
Q ss_pred CCCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccC
Q psy300 25 KKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 98 (451)
Q Consensus 25 ~~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f 98 (451)
.+.-.-.+..|+|+|.|+.-|.+.++.+++.+|.+.+.+++..+.|+++|-++|.|.++.++.+++..+.+..+
T Consensus 729 ~d~~~~gK~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~ 802 (881)
T KOG0128|consen 729 RDSCFFGKISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGK 802 (881)
T ss_pred hhhhhhhhhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhh
Confidence 33344457899999999999999999999999999999999888999999999999999999999876655433
No 177
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=93.70 E-value=0.27 Score=41.12 Aligned_cols=56 Identities=20% Similarity=0.199 Sum_probs=44.9
Q ss_pred CCcHHHHHHHhcc--cCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQ--YGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~--fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
+.|.+.|.+++.. .|...-+-++.| .++.+.|||||.|.++++|.+-....+|+.+
T Consensus 12 ~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w 70 (97)
T PF04059_consen 12 KYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKW 70 (97)
T ss_pred CCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCcc
Confidence 4677888888764 455666666777 6777899999999999999999999988765
No 178
>KOG2068|consensus
Probab=93.61 E-value=0.043 Score=55.01 Aligned_cols=73 Identities=22% Similarity=0.377 Sum_probs=56.9
Q ss_pred CCCceEEEcCCCCCCCHHHH---HHHhccCCCeEEEEEeECCC--CCce--eEEEEEEccHHHHHHHHHhcCCccCCCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEF---KEHFGQYGDIIDAQLLKNAD--GKLK--GCGFINYANKISAVKAILKSNKKPYKGKI 102 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L---~~~F~~~G~I~~i~l~~d~t--g~sk--G~aFV~F~~~~~A~~Al~~lng~~f~G~~ 102 (451)
..+.-+||-+|+.++..+.+ .+.|.+||.|..+...++.+ ..+- .-++|.|...++|..||...+|.++.|+.
T Consensus 75 Vqknlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~ 154 (327)
T KOG2068|consen 75 VQKNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRA 154 (327)
T ss_pred hhhhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhh
Confidence 45578899999988766665 45899999999998877652 1111 12799999999999999999998888754
No 179
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=93.57 E-value=0.14 Score=43.05 Aligned_cols=69 Identities=20% Similarity=0.340 Sum_probs=45.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEE-EeEC-------CCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQ-LLKN-------ADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~-l~~d-------~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
..+-|-|=+.|+. ....+.+.|++||.|.+.. +.++ +.......-.|.|.++.+|.+||+ -||.++.|.
T Consensus 5 ~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~ 81 (100)
T PF05172_consen 5 SETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGS 81 (100)
T ss_dssp GCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTC
T ss_pred CCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCc
Confidence 3456778889888 5677889999999998774 1111 111224578999999999999997 577777663
No 180
>KOG4660|consensus
Probab=93.36 E-value=0.048 Score=57.78 Aligned_cols=59 Identities=20% Similarity=0.396 Sum_probs=49.6
Q ss_pred CCCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccCCCCC
Q psy300 100 GKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSENG 162 (451)
Q Consensus 100 G~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~~~~G 162 (451)
..+++++|..+|+.||+|..++.-.. .+|..||+|.+..+|++|+.+++++-+.+..-+
T Consensus 85 ~~Vsn~~L~~~f~~yGeir~ir~t~~----~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 85 RSVSNDTLLRIFGAYGEIREIRETPN----KRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred CcCCHHHHHHHHHhhcchhhhhcccc----cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 36899999999999999999665443 378999999999999999999998877655444
No 181
>KOG0151|consensus
Probab=93.36 E-value=0.13 Score=56.16 Aligned_cols=74 Identities=22% Similarity=0.473 Sum_probs=57.4
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC----CCCccceEEEEecchHHHHHHHHhcCCCcccCCCC----CcccccccCCc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA----DGKLKGCGFINYANKISAVKAILKSNKKPYKGSEN----GLISPFHDIPL 172 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~----~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~~~~----G~iSp~hdiPl 172 (451)
+++++.|...|..||+|.+++++.-+ ..+.+.||||.|-++.+|.+|+..+++.++....- |+..++..+|+
T Consensus 185 sv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk~V~ip~~p~ 264 (877)
T KOG0151|consen 185 SVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGKAVPIPNIPI 264 (877)
T ss_pred cccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeeeccccccccCCccc
Confidence 47999999999999999999998642 23457899999999999999999999988654332 22344555555
Q ss_pred cc
Q psy300 173 YS 174 (451)
Q Consensus 173 ~v 174 (451)
+.
T Consensus 265 ~i 266 (877)
T KOG0151|consen 265 YI 266 (877)
T ss_pred cC
Confidence 43
No 182
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.09 E-value=0.85 Score=39.01 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=49.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGD-IIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 99 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~-I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~ 99 (451)
....+.+...|..++-++|..+.+.+-. |.+++++++.+ .++=.+.+.|.+.++|..-...+||+.|.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3334444445555666677766666644 77889988743 25556899999999999999999999886
No 183
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=92.51 E-value=0.38 Score=42.80 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=51.2
Q ss_pred CCCCCCCCceEEEcCCCCCCCH----HHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCC
Q psy300 25 KKPDKTKRGRLFIKNLPFKITE----EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 95 (451)
Q Consensus 25 ~~~~~~~~~~lfVgnLp~~vte----~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng 95 (451)
+.....++++|.|+=|..++.. ..+....+.||+|.++.+. | +-.|.|.|.+..+|.+|+.++..
T Consensus 79 k~~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----G--rqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 79 KNTKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----G--RQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred ccCCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----C--CceEEEEehhhHHHHHHHHhhcC
Confidence 3455778999999987777654 3455667899999999884 3 44699999999999999998764
No 184
>KOG2202|consensus
Probab=92.33 E-value=0.072 Score=51.55 Aligned_cols=56 Identities=21% Similarity=0.393 Sum_probs=46.1
Q ss_pred HHHHHHhc-ccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccCCC
Q psy300 105 EEFKEHFG-QYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160 (451)
Q Consensus 105 e~L~~~F~-~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~~~ 160 (451)
+++...|+ +||.|+.+.|..+..-.-+|=+||.|...++|.+|+..+|++.|-+.+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~p 139 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRP 139 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCc
Confidence 55555555 899999998887755566888999999999999999999999984433
No 185
>KOG0115|consensus
Probab=91.83 E-value=0.39 Score=46.63 Aligned_cols=63 Identities=22% Similarity=0.361 Sum_probs=56.2
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccCCCCCc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSENGL 163 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~~~~G~ 163 (451)
.++.+.|.+.|+.||.|+...+..|..+++.+-++|.|...-.|.+|........++....+.
T Consensus 42 ~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~ 104 (275)
T KOG0115|consen 42 GASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGR 104 (275)
T ss_pred hhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCC
Confidence 478899999999999999999988888899999999999999999999999888877766665
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=90.18 E-value=0.4 Score=44.45 Aligned_cols=71 Identities=20% Similarity=0.179 Sum_probs=46.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhcc-CCCe---EEEEEeECC--CCC-ceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQ-YGDI---IDAQLLKNA--DGK-LKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~-~G~I---~~i~l~~d~--tg~-skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....+|-|++||+++|++++.+.++. ++.- ..+.-.... .+. .-.-|||.|.+.+++..-...++|..|..
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 35669999999999999999887776 6665 344322222 222 23459999999999888888899887764
No 187
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=89.92 E-value=1.4 Score=33.76 Aligned_cols=55 Identities=11% Similarity=0.292 Sum_probs=43.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccC---CCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhc
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQY---GDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~---G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~l 93 (451)
...|+|+|+ .+++.++|+.+|..| .....|..+-| .-|=|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~~~IEWIdD------tScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGPFRIEWIDD------TSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCCceEEEecC------CcEEEEECCHHHHHHHHHcC
Confidence 357999998 458899999999999 12457777766 23779999999999999764
No 188
>KOG1996|consensus
Probab=88.34 E-value=0.88 Score=45.00 Aligned_cols=55 Identities=22% Similarity=0.320 Sum_probs=44.1
Q ss_pred cHHHHHHHhcccCcceeeEEeeCCCC--CccceEEEEecchHHHHHHHHhcCCCccc
Q psy300 103 TEEEFKEHFGQYGDIIDAQLLKNADG--KLKGCGFINYANKISAVKAILKSNKKPYK 157 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~v~~d~~g--~srG~gFV~F~s~e~A~~Ai~~ln~riy~ 157 (451)
-++++++.+++||.|..|.|.-.++. .-----||+|+..++|.+|+-.+|||.|.
T Consensus 299 lede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFG 355 (378)
T KOG1996|consen 299 LEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFG 355 (378)
T ss_pred HHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceec
Confidence 45788889999999999998765321 11235799999999999999999999873
No 189
>KOG1996|consensus
Probab=87.60 E-value=1.2 Score=44.09 Aligned_cols=56 Identities=21% Similarity=0.404 Sum_probs=45.0
Q ss_pred HHHHHHhccCCCeEEEEEeECCCC-Ccee-EEEEEEccHHHHHHHHHhcCCccCCCCC
Q psy300 47 EEFKEHFGQYGDIIDAQLLKNADG-KLKG-CGFINYANKISAVKAILKSNKKPYKGKI 102 (451)
Q Consensus 47 ~~L~~~F~~~G~I~~i~l~~d~tg-~skG-~aFV~F~~~~~A~~Al~~lng~~f~G~~ 102 (451)
+++.+-+++||.|..|.+.-.++- ...- --||+|...++|.+|+-.|||..|.|++
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~ 358 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRV 358 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceeccee
Confidence 467888999999999988766521 1122 3699999999999999999999999964
No 190
>KOG2202|consensus
Probab=86.80 E-value=0.27 Score=47.72 Aligned_cols=55 Identities=22% Similarity=0.421 Sum_probs=44.4
Q ss_pred HHHHHHhc-cCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 47 EEFKEHFG-QYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 47 ~~L~~~F~-~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
+++...|+ +||+|.++.+-.+-.-.-+|=++|.|...++|++|++.||+.-|.|+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~ 138 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGR 138 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCC
Confidence 34444555 99999999776554445578899999999999999999999999884
No 191
>KOG0112|consensus
Probab=86.67 E-value=0.76 Score=51.57 Aligned_cols=68 Identities=19% Similarity=0.197 Sum_probs=59.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....+.+|+++|..-.....|...|..||.|..|.+-. ...|++|+|.+...|+.|+..|.|..|.|
T Consensus 451 kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h-----gq~yayi~yes~~~aq~a~~~~rgap~G~ 518 (975)
T KOG0112|consen 451 KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH-----GQPYAYIQYESPPAAQAATHDMRGAPLGG 518 (975)
T ss_pred ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc-----CCcceeeecccCccchhhHHHHhcCcCCC
Confidence 345678999999999999999999999999999887742 25699999999999999999999988876
No 192
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=84.49 E-value=1.8 Score=36.43 Aligned_cols=53 Identities=25% Similarity=0.396 Sum_probs=36.0
Q ss_pred cHHHHHHHhcccCcceeeE-EeeC-------CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 103 TEEEFKEHFGQYGDIIDAQ-LLKN-------ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~-v~~d-------~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.-..+.++|++||.|.+.. +.++ +......+..|+|.++.+|.+|+.. ||+++
T Consensus 18 ~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~ 78 (100)
T PF05172_consen 18 ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIF 78 (100)
T ss_dssp GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEE
T ss_pred HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEE
Confidence 4467889999999987764 1111 1112256899999999999999954 56654
No 193
>KOG0804|consensus
Probab=81.04 E-value=5.2 Score=41.94 Aligned_cols=69 Identities=14% Similarity=0.196 Sum_probs=58.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYG-DIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G-~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
+.+.|+|=.+|.-++-.||..|...+- .|.+++++||... ++=...+.|.+.++|..-...+||+.|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p-nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP-NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC-ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 378999999999999999999998775 4899999996422 23347999999999999999999998873
No 194
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=80.34 E-value=2.3 Score=42.85 Aligned_cols=49 Identities=27% Similarity=0.367 Sum_probs=37.0
Q ss_pred HHHhcccCcceeeEEeeCC-CCCc-cc--eEEEEecchHHHHHHHHhcCCCcc
Q psy300 108 KEHFGQYGDIIDAQLLKNA-DGKL-KG--CGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 108 ~~~F~~fG~V~~v~v~~d~-~g~s-rG--~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++|.+||.|..+.+-+.. +..+ .+ -.||+|.+.++|.+||...+|.+.
T Consensus 138 ~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~ 190 (480)
T COG5175 138 HEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLL 190 (480)
T ss_pred hhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccc
Confidence 5789999999998886542 1111 12 249999999999999999888764
No 195
>KOG2416|consensus
Probab=77.16 E-value=1.6 Score=47.12 Aligned_cols=68 Identities=21% Similarity=0.303 Sum_probs=54.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccC-CCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQY-GDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 99 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~-G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~ 99 (451)
......+.|||.||-.-.|.-+|+.++..- |.|.+. +| | +-+..|||.|.+.++|.+...+|+|..+.
T Consensus 439 sR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D---kIKShCyV~yss~eEA~atr~AlhnV~WP 507 (718)
T KOG2416|consen 439 SRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D---KIKSHCYVSYSSVEEAAATREALHNVQWP 507 (718)
T ss_pred CCCCccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H---HhhcceeEecccHHHHHHHHHHHhccccC
Confidence 356678899999999999999999999955 456555 32 2 34667999999999999999999886543
No 196
>KOG1855|consensus
Probab=74.47 E-value=2.2 Score=44.26 Aligned_cols=51 Identities=27% Similarity=0.377 Sum_probs=41.7
Q ss_pred cHHHHHHHhcccCcceeeEEeeC---C---CCC-c-------cceEEEEecchHHHHHHHHhcCC
Q psy300 103 TEEEFKEHFGQYGDIIDAQLLKN---A---DGK-L-------KGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~v~~d---~---~g~-s-------rG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
.-+.|.++|..+|.|..+++++- + .+. + +-+|+|+|...+.|.+|...++-
T Consensus 244 ~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 244 SYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred HHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 45899999999999999999764 1 121 2 46899999999999999999853
No 197
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=69.02 E-value=9.3 Score=31.20 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=32.4
Q ss_pred HHHHHHhcccCc-ceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccC
Q psy300 105 EEFKEHFGQYGD-IIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158 (451)
Q Consensus 105 e~L~~~F~~fG~-V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~ 158 (451)
.-|++++.-+|. |.++ +.+.|+|.|.+.+.|.+|...|++...|+
T Consensus 21 ~RL~qLsdNCGGkVl~v---------~~~tAilrF~~~~~A~RA~KRmegEdVfG 66 (90)
T PF11608_consen 21 NRLRQLSDNCGGKVLSV---------SGGTAILRFPNQEFAERAQKRMEGEDVFG 66 (90)
T ss_dssp HHHHHHHHTTT--EEE-----------TT-EEEEESSHHHHHHHHHHHTT--SSS
T ss_pred HHHHHHhhccCCEEEEE---------eCCEEEEEeCCHHHHHHHHHhhccccccc
Confidence 567888888877 4433 14679999999999999999999876655
No 198
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=68.14 E-value=13 Score=33.47 Aligned_cols=65 Identities=14% Similarity=0.280 Sum_probs=43.9
Q ss_pred CCCCCceEEEcCCC-----CCCCH----HHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccC
Q psy300 28 DKTKRGRLFIKNLP-----FKITE----EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 98 (451)
Q Consensus 28 ~~~~~~~lfVgnLp-----~~vte----~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f 98 (451)
-.++..||.|.=+. ...-. .+|...|..||.+.=+|+.. +.-.|.|.+-..|.+|++ ++|..+
T Consensus 23 ~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-------~~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 23 QGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-------DTMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp ---TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-------TCEEEEESSCHHHHHHHH-GCCSEE
T ss_pred cCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-------CeEEEEECccHHHHHHHc-cCCcEE
Confidence 35577888887555 11222 36788999999988777763 357899999999999986 677766
Q ss_pred CC
Q psy300 99 KG 100 (451)
Q Consensus 99 ~G 100 (451)
.|
T Consensus 95 ~g 96 (146)
T PF08952_consen 95 NG 96 (146)
T ss_dssp TT
T ss_pred CC
Confidence 65
No 199
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=62.78 E-value=27 Score=27.00 Aligned_cols=50 Identities=16% Similarity=0.304 Sum_probs=39.3
Q ss_pred CCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC
Q psy300 42 FKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 99 (451)
Q Consensus 42 ~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~ 99 (451)
..++-++++..+..|+- .++..++|| -||.|.+..+|++|....+|+.+.
T Consensus 10 ~~~~v~d~K~~Lr~y~~---~~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 10 HGVTVEDFKKRLRKYRW---DRIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CCccHHHHHHHHhcCCc---ceEEecCCE-----EEEEECChHHHHHHHHhcCCCEEE
Confidence 35777899999999975 344455455 489999999999999998887654
No 200
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=61.28 E-value=27 Score=29.84 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=42.2
Q ss_pred CcHHHHHHHhcccCc-ceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 102 ITEEEFKEHFGQYGD-IIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 102 ~tee~L~~~F~~fG~-V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++.++|..+.+.+-. |..+++.+|.. .++..+.+.|.+.++|..-....||+.|
T Consensus 25 ~~~d~l~~f~~~~~~~i~~~riird~~-pnrymVLikF~~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 25 TPSDFLLFFGAPFREDIEHIRIIRDGT-PNRYMVLIKFRDQESADEFYEEFNGKPF 79 (110)
T ss_pred ccHHHHHHhhhcccccEEEEEEeeCCC-CceEEEEEEECCHHHHHHHHHHhCCCcc
Confidence 355667666666544 78888888743 3678899999999999999999999877
No 201
>KOG1995|consensus
Probab=60.66 E-value=9.7 Score=38.80 Aligned_cols=56 Identities=23% Similarity=0.297 Sum_probs=47.2
Q ss_pred CCcHHHHHHHhcccCccee--------eEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIID--------AQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~--------v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++++++.++|.++|.|.. +.+.++ ++++++|-|-|.|++...|+.|+.-.+++-|
T Consensus 77 ~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 77 SVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred cchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 6899999999999988743 334445 5788999999999999999999999988766
No 202
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=58.91 E-value=17 Score=32.67 Aligned_cols=42 Identities=17% Similarity=0.262 Sum_probs=34.0
Q ss_pred HHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCC
Q psy300 106 EFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 106 ~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
.+....+.||+|.++.+.- +.-|.|.|.+..+|-+|+.+..-
T Consensus 106 sV~~~Ls~fGpI~SVT~cG------rqsavVvF~d~~SAC~Av~Af~s 147 (166)
T PF15023_consen 106 SVIQRLSVFGPIQSVTLCG------RQSAVVVFKDITSACKAVSAFQS 147 (166)
T ss_pred HHHHHHHhcCCcceeeecC------CceEEEEehhhHHHHHHHHhhcC
Confidence 3444557899999999864 44689999999999999999764
No 203
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=58.05 E-value=16 Score=34.10 Aligned_cols=51 Identities=20% Similarity=0.187 Sum_probs=39.0
Q ss_pred CHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcC--CccCCC
Q psy300 45 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN--KKPYKG 100 (451)
Q Consensus 45 te~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~ln--g~~f~G 100 (451)
..+.|+++|..++.+.+...++. -+-..|.|.+.+.|.+|...++ +..+.|
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~~~~~~~~g 60 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLHWDGTSFNG 60 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST--TSEETT
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhcccccccCC
Confidence 45789999999999988877743 3457899999999999999988 776666
No 204
>KOG4285|consensus
Probab=57.71 E-value=13 Score=37.23 Aligned_cols=61 Identities=16% Similarity=0.191 Sum_probs=43.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.=|=|=++|+.-. .-|..+|+++|.|+..... .+--+-+|.|.+..+|++||. .||+++.|
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~-----~ngNwMhirYssr~~A~KALs-kng~ii~g 258 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP-----SNGNWMHIRYSSRTHAQKALS-KNGTIIDG 258 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecC-----CCCceEEEEecchhHHHHhhh-hcCeeecc
Confidence 3344446766533 4578899999998765543 233478999999999999997 46666665
No 205
>KOG4574|consensus
Probab=56.41 E-value=5.2 Score=44.96 Aligned_cols=61 Identities=16% Similarity=0.252 Sum_probs=51.8
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccC
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 98 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f 98 (451)
.+.++-|.+-+.+...|..+|++||.|.+.+.+|+ --.|.|+|.+.+.|..|+.+++|+..
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkev 359 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEV 359 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCcc
Confidence 34556677778888899999999999999988876 44689999999999999999999754
No 206
>KOG2591|consensus
Probab=56.35 E-value=33 Score=37.13 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=48.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcc--CCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhc
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQ--YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~--~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~l 93 (451)
..++|-|.++-||..+-.++++-+|+. +-++.+|.+-.+. -=||.|++..+|+.|...|
T Consensus 172 ~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~------nWyITfesd~DAQqAykyl 232 (684)
T KOG2591|consen 172 NHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND------NWYITFESDTDAQQAYKYL 232 (684)
T ss_pred CcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC------ceEEEeecchhHHHHHHHH
Confidence 446788899999999999999999984 6678888886542 1489999999999997654
No 207
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=54.89 E-value=34 Score=26.46 Aligned_cols=49 Identities=16% Similarity=0.340 Sum_probs=38.4
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCccc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 157 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~ 157 (451)
.++-++++..+..|+- .++..|++ || ||.|.+..+|.++....+++.++
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t----Gf-YIvF~~~~Ea~rC~~~~~~~~~f 59 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT----GF-YIVFNDSKEAERCFRAEDGTLFF 59 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC----EE-EEEECChHHHHHHHHhcCCCEEE
Confidence 4678899999999854 34555654 44 89999999999999999887654
No 208
>KOG3152|consensus
Probab=52.95 E-value=9.1 Score=37.40 Aligned_cols=65 Identities=25% Similarity=0.376 Sum_probs=49.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CC--------CCccc----eEEEEecchHHHHHHHHhcCCCcccCCCCCc-ccc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-AD--------GKLKG----CGFINYANKISAVKAILKSNKKPYKGSENGL-ISP 166 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~--------g~srG----~gFV~F~s~e~A~~Ai~~ln~riy~~~~~G~-iSp 166 (451)
......|+++|+.||.|-.+-+... .+ |.+++ -|.|+|.+...|.++...||+... .|+ .|+
T Consensus 85 ~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I----ggkk~S~ 160 (278)
T KOG3152|consen 85 YMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI----GGKKKSP 160 (278)
T ss_pred ccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc----CCCCCCc
Confidence 3577899999999999999888654 22 23332 356999999999999999998875 333 666
Q ss_pred ccc
Q psy300 167 FHD 169 (451)
Q Consensus 167 ~hd 169 (451)
+|+
T Consensus 161 ~~~ 163 (278)
T KOG3152|consen 161 FRD 163 (278)
T ss_pred hHH
Confidence 665
No 209
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=52.69 E-value=39 Score=25.86 Aligned_cols=44 Identities=14% Similarity=0.404 Sum_probs=33.9
Q ss_pred CCcHHHHHHHhccc----CcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhc
Q psy300 101 KITEEEFKEHFGQY----GDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 151 (451)
Q Consensus 101 ~~tee~L~~~F~~f----G~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~l 151 (451)
.++.++++.+|..| + ...+.-..|. -+=|.|.+.+.|.+|+.+|
T Consensus 15 ~lsT~dI~~y~~~y~~~~~-~~~IEWIdDt------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 15 ELSTDDIKAYFSEYFDEEG-PFRIEWIDDT------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred CCCHHHHHHHHHHhcccCC-CceEEEecCC------cEEEEECCHHHHHHHHHcC
Confidence 67899999999998 3 3455555552 2569999999999998764
No 210
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=50.54 E-value=42 Score=27.39 Aligned_cols=46 Identities=15% Similarity=0.273 Sum_probs=34.6
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
.....||.++|+.||.|.--- +.| .-|||....++.|..|+..+..
T Consensus 19 eWK~~DI~qlFspfG~I~VsW-i~d------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 19 EWKTSDIYQLFSPFGQIYVSW-IND------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp T--HHHHHHHCCCCCCEEEEE-ECT------TEEEEEECCCHHHHHHHHHHTT
T ss_pred HhhhhhHHHHhccCCcEEEEE-EcC------CcEEEEeecHHHHHHHHHHhcc
Confidence 356789999999999975333 333 2499999999999999988753
No 211
>KOG4285|consensus
Probab=50.07 E-value=16 Score=36.56 Aligned_cols=48 Identities=19% Similarity=0.202 Sum_probs=37.3
Q ss_pred cHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.-.-+..+|++||.|....... .-.+-+|.|.++.+|.+|+.+ |++++
T Consensus 209 ~~s~vL~~F~~cG~Vvkhv~~~-----ngNwMhirYssr~~A~KALsk-ng~ii 256 (350)
T KOG4285|consen 209 QVSIVLNLFSRCGEVVKHVTPS-----NGNWMHIRYSSRTHAQKALSK-NGTII 256 (350)
T ss_pred chhHHHHHHHhhCeeeeeecCC-----CCceEEEEecchhHHHHhhhh-cCeee
Confidence 3466788999999988755542 246899999999999999965 56664
No 212
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=48.14 E-value=32 Score=32.13 Aligned_cols=45 Identities=20% Similarity=0.124 Sum_probs=35.7
Q ss_pred cHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcC
Q psy300 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
..+.|+++|..|+.+.....++. -+-..|.|.+.++|.+|...++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~s-----FrRi~v~f~~~~~A~~~r~~l~ 52 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKS-----FRRIRVVFESPESAQRARQLLH 52 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETT-----TTEEEEE-SSTTHHHHHHHTST
T ss_pred hHHHHHHHHHhcCCceEEEEcCC-----CCEEEEEeCCHHHHHHHHHHhc
Confidence 44789999999999988888865 4457899999999999999987
No 213
>PF08437 Glyco_transf_8C: Glycosyl transferase family 8 C-terminal; InterPro: IPR013645 This domain is found at the C terminus of bacterial glucosyltransferase and galactosyltransferase proteins. ; GO: 0008918 lipopolysaccharide 3-alpha-galactosyltransferase activity, 0009103 lipopolysaccharide biosynthetic process
Probab=44.99 E-value=10 Score=28.46 Aligned_cols=13 Identities=46% Similarity=0.749 Sum_probs=10.5
Q ss_pred ccCCccCCCcccc
Q psy300 384 LISPFHDIPLYSN 396 (451)
Q Consensus 384 ~~s~~hd~~l~~~ 396 (451)
..|||.|+||...
T Consensus 12 ~~SPWk~~pl~~a 24 (57)
T PF08437_consen 12 KNSPWKDIPLLKA 24 (57)
T ss_pred HcCCCCCCCCcCC
Confidence 3799999999644
No 214
>KOG2253|consensus
Probab=44.97 E-value=16 Score=40.08 Aligned_cols=66 Identities=17% Similarity=0.265 Sum_probs=54.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
+...+..++||+|+...+..+-+..+....|-|.++.... |||..|.......+|+..++.....|
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~--------fgf~~f~~~~~~~ra~r~~t~~~~~~ 100 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK--------FGFCEFLKHIGDLRASRLLTELNIDD 100 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh--------hcccchhhHHHHHHHHHHhcccCCCc
Confidence 3455678999999999999999999999999998886642 99999999999999988766554433
No 215
>KOG4676|consensus
Probab=44.03 E-value=5.4 Score=41.11 Aligned_cols=58 Identities=16% Similarity=0.102 Sum_probs=48.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHh
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~ 92 (451)
+++++|++|+..+...++-++|..+|+|...++. .|-...+|-+.|....+...|+..
T Consensus 151 rRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a---sk~~s~~c~~sf~~qts~~halr~ 208 (479)
T KOG4676|consen 151 RRTREVQSLISAAILPESGESFERKGEVSYAHTA---SKSRSSSCSHSFRKQTSSKHALRS 208 (479)
T ss_pred Hhhhhhhcchhhhcchhhhhhhhhcchhhhhhhh---ccCCCcchhhhHhhhhhHHHHHHh
Confidence 4789999999999999999999999998877653 444556788999999888888764
No 216
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=43.62 E-value=43 Score=30.11 Aligned_cols=39 Identities=21% Similarity=0.500 Sum_probs=31.5
Q ss_pred HHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHh
Q psy300 105 EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 150 (451)
Q Consensus 105 e~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ 150 (451)
.+|.+.|..||.+.-+++..+ .-.|+|.+.++|.+|+..
T Consensus 51 ~~ll~~~~~~GevvLvRfv~~-------~mwVTF~dg~sALaals~ 89 (146)
T PF08952_consen 51 DELLQKFAQYGEVVLVRFVGD-------TMWVTFRDGQSALAALSL 89 (146)
T ss_dssp HHHHHHHHCCS-ECEEEEETT-------CEEEEESSCHHHHHHHHG
T ss_pred HHHHHHHHhCCceEEEEEeCC-------eEEEEECccHHHHHHHcc
Confidence 577888899999888877753 468999999999998854
No 217
>KOG4483|consensus
Probab=43.46 E-value=60 Score=33.86 Aligned_cols=55 Identities=16% Similarity=0.242 Sum_probs=44.7
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEeECCCCCceeEEEEEEccHHHHHHHHHh
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYGD-IIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G~-I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~ 92 (451)
..-|=|-++|.....+||...|+.||. --.|+++.| -.+|-.|.+...|..|+-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------ceeEEeecchHHHHHHhhc
Confidence 456778899999999999999999975 456777654 3689999999999988753
No 218
>KOG4849|consensus
Probab=43.43 E-value=41 Score=34.37 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=38.2
Q ss_pred CcHHHHHHHhcccCc--ceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 102 ITEEEFKEHFGQYGD--IIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 102 ~tee~L~~~F~~fG~--V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
+|+++|.+.....|- +.+.++.-+ .+|+|+|||.|...+..+.++.++-+..|-
T Consensus 92 TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~ 148 (498)
T KOG4849|consen 92 TTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKT 148 (498)
T ss_pred eccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccce
Confidence 456666666655554 445555555 468999999999999888888887776554
No 219
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=40.16 E-value=39 Score=33.80 Aligned_cols=58 Identities=19% Similarity=0.326 Sum_probs=46.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC--------CCCceeEEEEEEccHHHHHH
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA--------DGKLKGCGFINYANKISAVK 88 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~--------tg~skG~aFV~F~~~~~A~~ 88 (451)
..|.|...|+..+++-..+...|.+||+|++|.++.+. ..+......+.|-+.+.|..
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLd 79 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLD 79 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHH
Confidence 35678889999999999999999999999999998764 12234567888988877643
No 220
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=38.85 E-value=63 Score=24.75 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=15.2
Q ss_pred HHHHHHhccCCCeEEEEE
Q psy300 47 EEFKEHFGQYGDIIDAQL 64 (451)
Q Consensus 47 ~~L~~~F~~~G~I~~i~l 64 (451)
++|+++|+.+|.|.-+-+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999876655
No 221
>KOG2068|consensus
Probab=34.31 E-value=25 Score=35.70 Aligned_cols=50 Identities=26% Similarity=0.294 Sum_probs=38.0
Q ss_pred HHhcccCcceeeEEeeCCC--CC--ccceEEEEecchHHHHHHHHhcCCCcccC
Q psy300 109 EHFGQYGDIIDAQLLKNAD--GK--LKGCGFINYANKISAVKAILKSNKKPYKG 158 (451)
Q Consensus 109 ~~F~~fG~V~~v~v~~d~~--g~--srG~gFV~F~s~e~A~~Ai~~ln~riy~~ 158 (451)
+.|.+||.|..+.+.++.+ .. ..--++|+|+..++|.+||..-++.++-+
T Consensus 99 eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg 152 (327)
T KOG2068|consen 99 EYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDG 152 (327)
T ss_pred ccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhh
Confidence 4778999999999887642 11 11238999999999999999988877633
No 222
>KOG2416|consensus
Probab=30.45 E-value=25 Score=38.30 Aligned_cols=51 Identities=18% Similarity=0.226 Sum_probs=40.8
Q ss_pred CCcHHHHHHHhcc-cCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~-fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
-.|.-+|+.++.+ .|.|++..|-+- +.-|||.|.+.++|...+.+|++-.|
T Consensus 455 PFTlgQLkelL~rtgg~Vee~WmDkI-----KShCyV~yss~eEA~atr~AlhnV~W 506 (718)
T KOG2416|consen 455 PFTLGQLKELLGRTGGNVEEFWMDKI-----KSHCYVSYSSVEEAAATREALHNVQW 506 (718)
T ss_pred cchHHHHHHHHhhccCchHHHHHHHh-----hcceeEecccHHHHHHHHHHHhcccc
Confidence 3699999999985 556887744322 45699999999999999999988765
No 223
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=30.28 E-value=44 Score=28.94 Aligned_cols=35 Identities=26% Similarity=0.589 Sum_probs=26.3
Q ss_pred cCCCccceeeeccccceEEEEEeeCC------------CCc--hhhhhhh
Q psy300 409 PRWTNAKMEVGNAMEMRLYLVCFNLP------------SPL--GYLQLNL 444 (451)
Q Consensus 409 p~~~~~k~e~~~~~~~~~~~~~~~~~------------~~~--~~~~~~~ 444 (451)
|+| |..|+|.-+...++.+.|++-. ..+ |++||++
T Consensus 44 PvW-nE~F~i~l~~s~~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 44 PNW-NEEFEIELEGSQTLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred Ccc-ceEEEEEeCCCCEEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 777 7778887778889999999864 224 7777764
No 224
>KOG4574|consensus
Probab=26.12 E-value=38 Score=38.49 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=45.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCccc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 157 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~ 157 (451)
+.+-.-|..+|+.||.|.++..+++ -..|.|.|.+.+.|..|..++.|+-..
T Consensus 309 ~~tSssL~~l~s~yg~v~s~wtlr~-----~N~alvs~~s~~sai~a~dAl~gkevs 360 (1007)
T KOG4574|consen 309 NLTSSSLATLCSDYGSVASAWTLRD-----LNMALVSFSSVESAILALDALQGKEVS 360 (1007)
T ss_pred cchHHHHHHHHHhhcchhhheeccc-----ccchhhhhHHHHHHHHhhhhhcCCccc
Confidence 3678899999999999999999987 346899999999999999999998644
No 225
>KOG2891|consensus
Probab=25.22 E-value=56 Score=32.41 Aligned_cols=35 Identities=17% Similarity=0.492 Sum_probs=27.2
Q ss_pred CceEEEcCCCCC------------CCHHHHHHHhccCCCeEEEEEeE
Q psy300 32 RGRLFIKNLPFK------------ITEEEFKEHFGQYGDIIDAQLLK 66 (451)
Q Consensus 32 ~~~lfVgnLp~~------------vte~~L~~~F~~~G~I~~i~l~~ 66 (451)
..+||+.+||-. -+++-|+..|+.||.|..+.++.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 347888888853 35677999999999999887743
No 226
>KOG4410|consensus
Probab=23.45 E-value=1.3e+02 Score=30.15 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=36.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCe-EEEEEeECCCCCceeEEEEEEccHH
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYGDI-IDAQLLKNADGKLKGCGFINYANKI 84 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G~I-~~i~l~~d~tg~skG~aFV~F~~~~ 84 (451)
.+-||++|||.++.-.||+..+.+-|.+ .++.+ .| +.|-||+.|.+..
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw----kg-~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW----KG-HFGKCFLHFGNRK 378 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee----ec-CCcceeEecCCcc
Confidence 4679999999999999999999888753 33433 22 3677999998753
No 227
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i.e. proteins involved in the specification of the neuroblast during cellular differentiation. ; PDB: 2YUE_A 2E63_A.
Probab=23.22 E-value=81 Score=24.46 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=15.6
Q ss_pred eEEEeccccCCCccEEEEEEe
Q psy300 258 DVLEIGERIAKRGEIIQVKAL 278 (451)
Q Consensus 258 D~~~~~~~~~~~G~v~~vr~l 278 (451)
..+|++++|+.+|+.+.+|+.
T Consensus 30 ~giVFS~rPl~~~E~~~v~I~ 50 (69)
T PF07177_consen 30 NGIVFSSRPLRIGEKFEVRID 50 (69)
T ss_dssp S-EEEESS-B-TT-EEEEEEE
T ss_pred ceEEEecCCccCCCEEEEEEE
Confidence 579999999999999999984
No 228
>smart00588 NEUZ domain in neuralized proteins.
Probab=22.01 E-value=1.8e+02 Score=25.12 Aligned_cols=52 Identities=19% Similarity=0.194 Sum_probs=33.7
Q ss_pred cceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecCCccccCCCCcccccc
Q psy300 256 PIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIET 314 (451)
Q Consensus 256 PlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~d~~~~~i~~~~d~~~ 314 (451)
.=+.+|++++|+.+|+.+.+|+.-.-..--+ .==+++...||..-+ ..+++.
T Consensus 29 f~~givFS~rPl~~~E~~~v~i~~~~~~w~G----~l~~G~Ts~dP~~l~---~~~lp~ 80 (123)
T smart00588 29 FCNALVFSARPLRINELFEVKIEKVVRKWSG----ALRFGVTTCDPATLR---PASLPT 80 (123)
T ss_pred cCceEEecCCCCcCCCEEEEEEEEecCCccC----ceEEEEecCCccccc---CccCcc
Confidence 4488999999999999999999532111000 113678888995322 345553
No 229
>KOG0804|consensus
Probab=21.23 E-value=1.7e+02 Score=31.18 Aligned_cols=57 Identities=12% Similarity=0.188 Sum_probs=46.4
Q ss_pred CCcHHHHHHHhcccCc-ceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccC
Q psy300 101 KITEEEFKEHFGQYGD-IIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~-V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~ 158 (451)
.++--||..++..+-. |..+++++|.. .++-...+.|.+.++|..-...+||+.|-.
T Consensus 85 ~mt~~Dll~F~~~~~~~I~~irivRd~~-pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 85 YMTSHDLLRFCASFIKQISDIRIVRDGM-PNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred cccHHHHHHHHHHHhhhhheeEEeecCC-CceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 3677888888876544 89999999633 357788999999999999999999998744
Done!