Query psy300
Match_columns 451
No_of_seqs 462 out of 3133
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 22:56:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy300.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/300hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1e9g_A Ppase, inorganic pyroph 100.0 2E-67 6.8E-72 510.1 13.4 221 147-369 9-234 (286)
2 3q46_A TT-ippase; inorganic py 100.0 3.6E-58 1.2E-62 419.0 11.3 175 164-366 1-175 (178)
3 2prd_A Pyrophosphate phosphohy 100.0 1.4E-55 4.8E-60 401.0 13.7 171 165-363 1-174 (174)
4 3fq3_A Inorganic pyrophosphata 100.0 1.4E-54 4.7E-59 399.0 14.8 175 161-363 17-196 (197)
5 3gvf_A Inorganic pyrophosphata 100.0 1.2E-54 4.2E-59 399.1 13.5 175 161-363 17-196 (196)
6 2au7_A Inorganic pyrophosphata 100.0 1.9E-54 6.7E-59 393.0 14.7 170 166-363 1-174 (175)
7 3ld3_A Inorganic pyrophosphata 100.0 2.4E-54 8.2E-59 398.0 13.5 176 160-363 16-196 (199)
8 2bqx_A Inorganic pyrophosphata 100.0 2.5E-54 8.7E-59 392.4 12.6 169 166-363 2-173 (173)
9 3d53_A Inorganic pyrophosphata 100.0 7.6E-54 2.6E-58 388.4 13.1 166 166-360 3-172 (173)
10 1sxv_A Inorganic pyrophosphata 100.0 1.4E-53 4.7E-58 385.5 12.1 158 179-363 11-169 (172)
11 3tr4_A Inorganic pyrophosphata 100.0 2.2E-53 7.4E-58 387.1 13.0 167 168-363 6-176 (178)
12 1qez_A Ppase, S-ppase, protein 100.0 3E-53 1E-57 384.9 13.1 160 177-363 9-171 (173)
13 3nmr_A Cugbp ELAV-like family 99.9 9.8E-25 3.3E-29 196.7 17.2 127 31-157 2-162 (175)
14 4f02_A Polyadenylate-binding p 99.9 5E-25 1.7E-29 207.5 15.6 127 29-156 12-168 (213)
15 1fxl_A Paraneoplastic encephal 99.9 2.9E-24 9.9E-29 191.8 17.5 126 31-156 1-155 (167)
16 1b7f_A Protein (SXL-lethal pro 99.9 2.8E-24 9.6E-29 192.6 15.1 126 31-156 2-156 (168)
17 3md3_A Nuclear and cytoplasmic 99.9 4.1E-24 1.4E-28 190.7 14.5 124 33-156 1-154 (166)
18 1l3k_A Heterogeneous nuclear r 99.9 2.5E-23 8.6E-28 191.3 16.3 126 28-155 9-169 (196)
19 2cjk_A Nuclear polyadenylated 99.9 9.9E-24 3.4E-28 189.1 13.0 125 31-156 2-153 (167)
20 2qfj_A FBP-interacting repress 99.9 3E-23 1E-27 193.7 16.0 126 31-156 27-192 (216)
21 3smz_A Protein raver-1, ribonu 99.9 1.6E-21 5.5E-26 190.4 16.4 127 30-156 93-251 (284)
22 3sde_A Paraspeckle component 1 99.9 7.7E-22 2.6E-26 191.4 13.1 126 28-158 18-164 (261)
23 2g4b_A Splicing factor U2AF 65 99.9 1.8E-21 6.3E-26 175.1 12.9 120 31-156 3-161 (172)
24 2ghp_A U4/U6 snRNA-associated 99.9 1.7E-21 5.9E-26 191.0 12.8 128 27-156 36-184 (292)
25 3tyt_A Heterogeneous nuclear r 99.8 6.9E-21 2.4E-25 178.8 13.4 122 30-156 2-190 (205)
26 3smz_A Protein raver-1, ribonu 99.8 2.7E-21 9.3E-26 188.8 10.3 121 30-156 20-162 (284)
27 2ghp_A U4/U6 snRNA-associated 99.8 9.1E-21 3.1E-25 185.8 12.3 126 30-156 115-278 (292)
28 1fje_B Nucleolin RBD12, protei 99.8 1.2E-21 4.2E-26 177.1 5.5 124 28-156 9-161 (175)
29 2yh0_A Splicing factor U2AF 65 99.8 3.9E-20 1.3E-24 170.2 12.4 120 31-156 3-181 (198)
30 3pgw_A U1-A; protein-RNA compl 99.8 1.2E-19 4.2E-24 176.9 15.5 124 27-156 4-269 (282)
31 2adc_A Polypyrimidine tract-bi 99.8 4.3E-19 1.5E-23 168.7 14.2 120 29-156 31-214 (229)
32 1qm9_A Polypyrimidine tract-bi 99.8 2.6E-19 9E-24 165.4 11.4 118 31-156 2-183 (198)
33 4fxv_A ELAV-like protein 1; RN 99.7 3.5E-16 1.2E-20 129.9 9.8 72 30-101 17-89 (99)
34 3s8s_A Histone-lysine N-methyl 99.6 1.7E-15 5.9E-20 128.1 10.4 71 30-100 4-75 (110)
35 2dnh_A Bruno-like 5, RNA bindi 99.6 7.1E-15 2.4E-19 122.2 11.6 75 26-100 9-83 (105)
36 3lqv_A PRE-mRNA branch site pr 99.6 6.5E-15 2.2E-19 124.6 9.7 86 29-116 5-109 (115)
37 3p5t_L Cleavage and polyadenyl 99.6 2.9E-15 1E-19 121.5 7.2 69 33-101 2-73 (90)
38 1s79_A Lupus LA protein; RRM, 99.6 7.5E-15 2.6E-19 122.8 9.4 73 28-101 7-79 (103)
39 3bs9_A Nucleolysin TIA-1 isofo 99.6 1.1E-14 3.7E-19 116.7 9.5 71 30-100 4-75 (87)
40 2div_A TRNA selenocysteine ass 99.6 1.2E-14 4E-19 119.6 9.8 74 28-101 5-80 (99)
41 3md1_A Nuclear and cytoplasmic 99.6 1.5E-14 5E-19 114.9 9.7 69 32-100 1-70 (83)
42 2do4_A Squamous cell carcinoma 99.6 2.2E-14 7.5E-19 118.3 10.9 74 27-100 12-85 (100)
43 2lkz_A RNA-binding protein 5; 99.5 3E-15 1E-19 123.5 5.6 70 28-97 5-77 (95)
44 3ns6_A Eukaryotic translation 99.5 3.5E-15 1.2E-19 123.7 5.9 70 31-100 5-81 (100)
45 4f25_A Polyadenylate-binding p 99.5 9E-15 3.1E-19 124.3 8.6 69 31-100 4-72 (115)
46 1x4e_A RNA binding motif, sing 99.5 6.3E-15 2.2E-19 117.8 7.1 72 30-101 3-75 (85)
47 2dhg_A TRNA selenocysteine ass 99.5 2.4E-14 8.3E-19 118.8 10.9 74 27-100 4-79 (104)
48 2d9p_A Polyadenylate-binding p 99.5 2.2E-14 7.4E-19 119.0 10.6 74 26-100 9-82 (103)
49 2cqc_A Arginine/serine-rich sp 99.5 1.6E-14 5.6E-19 117.6 9.7 75 26-100 9-84 (95)
50 1p27_B RNA-binding protein 8A; 99.5 1.8E-14 6.3E-19 119.9 10.1 74 28-101 19-93 (106)
51 3mdf_A Peptidyl-prolyl CIS-tra 99.5 1E-14 3.5E-19 116.3 8.1 73 29-101 4-77 (85)
52 2la6_A RNA-binding protein FUS 99.5 2.6E-14 8.8E-19 117.8 10.7 75 27-101 8-91 (99)
53 2dnz_A Probable RNA-binding pr 99.5 2.5E-14 8.7E-19 116.6 10.4 71 30-100 3-74 (95)
54 2lxi_A RNA-binding protein 10; 99.5 2E-15 6.8E-20 123.2 3.6 69 32-100 1-72 (91)
55 2cq0_A Eukaryotic translation 99.5 2.2E-14 7.4E-19 119.0 10.0 73 28-100 11-84 (103)
56 2jrs_A RNA-binding protein 39; 99.5 3.1E-14 1E-18 119.8 10.7 76 26-101 20-96 (108)
57 1x5u_A Splicing factor 3B subu 99.5 2.4E-14 8.3E-19 119.0 10.0 74 27-100 10-84 (105)
58 2krb_A Eukaryotic translation 99.5 1.2E-14 4.2E-19 115.4 7.8 69 32-101 1-75 (81)
59 2x1f_A MRNA 3'-END-processing 99.5 1.6E-14 5.4E-19 118.4 8.6 70 31-100 1-71 (96)
60 2ywk_A Putative RNA-binding pr 99.5 2E-14 6.8E-19 117.2 9.1 73 28-100 12-84 (95)
61 1whw_A Hypothetical protein ri 99.5 2E-14 6.9E-19 118.2 9.2 72 29-100 5-77 (99)
62 2dgo_A Cytotoxic granule-assoc 99.5 3.9E-14 1.3E-18 119.8 11.0 75 26-100 9-84 (115)
63 2dgs_A DAZ-associated protein 99.5 3.4E-14 1.2E-18 116.9 10.3 72 28-100 6-78 (99)
64 2dnm_A SRP46 splicing factor; 99.5 1.7E-14 5.9E-19 119.6 8.5 74 27-100 8-82 (103)
65 1x5o_A RNA binding motif, sing 99.5 4.6E-14 1.6E-18 119.2 11.1 75 27-101 20-94 (114)
66 3s7r_A Heterogeneous nuclear r 99.5 3.5E-14 1.2E-18 114.0 9.8 72 28-100 7-79 (87)
67 3ulh_A THO complex subunit 4; 99.5 3.9E-14 1.3E-18 118.1 10.2 76 26-101 23-98 (107)
68 2wbr_A GW182, gawky, LD47780P; 99.5 1.7E-14 5.7E-19 116.8 7.5 78 31-113 6-89 (89)
69 2cph_A RNA binding motif prote 99.5 3.4E-14 1.2E-18 118.4 9.6 75 26-100 9-86 (107)
70 1oo0_B CG8781-PA, drosophila Y 99.5 2.3E-14 7.8E-19 120.3 8.4 74 27-100 21-95 (110)
71 2e5h_A Zinc finger CCHC-type a 99.5 3.1E-14 1.1E-18 115.8 8.9 74 27-100 11-85 (94)
72 2cpz_A CUG triplet repeat RNA- 99.5 3.8E-14 1.3E-18 120.0 9.3 75 26-100 19-94 (115)
73 1x5t_A Splicing factor 3B subu 99.5 2.1E-14 7.1E-19 117.3 7.2 71 30-100 3-75 (96)
74 1x4h_A RNA-binding protein 28; 99.5 4.7E-14 1.6E-18 118.3 9.6 73 28-100 11-90 (111)
75 2dgv_A HnRNP M, heterogeneous 99.5 8.5E-14 2.9E-18 112.8 10.8 72 29-101 5-76 (92)
76 2fy1_A RNA-binding motif prote 99.5 4E-14 1.4E-18 120.6 9.3 72 29-100 4-75 (116)
77 2hgl_A HNRPF protein, heteroge 99.5 4.6E-14 1.6E-18 124.0 9.7 88 27-115 39-135 (136)
78 2do0_A HnRNP M, heterogeneous 99.5 6.3E-14 2.2E-18 118.2 10.2 73 28-100 11-83 (114)
79 2khc_A Testis-specific RNP-typ 99.5 4.7E-14 1.6E-18 119.9 9.3 76 26-101 34-110 (118)
80 1x5s_A Cold-inducible RNA-bind 99.5 3.7E-14 1.3E-18 117.3 8.4 73 28-100 8-81 (102)
81 3ucg_A Polyadenylate-binding p 99.5 4.7E-14 1.6E-18 113.5 8.7 68 32-100 6-74 (89)
82 2dgp_A Bruno-like 4, RNA bindi 99.5 3E-14 1E-18 118.7 7.8 71 28-98 9-80 (106)
83 2dng_A Eukaryotic translation 99.5 7.7E-14 2.6E-18 115.7 10.3 73 26-100 9-82 (103)
84 2kxn_B Transformer-2 protein h 99.5 4.9E-14 1.7E-18 122.5 9.4 76 26-101 40-116 (129)
85 2mss_A Protein (musashi1); RNA 99.5 2.3E-14 8E-19 111.7 6.5 67 34-101 1-68 (75)
86 2cq3_A RNA-binding protein 9; 99.5 9.4E-14 3.2E-18 115.1 10.5 74 26-100 9-82 (103)
87 1wg5_A Heterogeneous nuclear r 99.5 6.7E-14 2.3E-18 116.7 9.7 74 27-101 10-84 (104)
88 3n9u_C Cleavage and polyadenyl 99.5 5.1E-14 1.7E-18 126.5 9.6 71 31-101 54-127 (156)
89 2cpe_A RNA-binding protein EWS 99.5 4.7E-14 1.6E-18 118.9 8.4 75 26-100 9-92 (113)
90 1uaw_A Mouse-musashi-1; RNP-ty 99.5 2.3E-14 7.9E-19 112.1 5.8 68 33-101 1-69 (77)
91 1p1t_A Cleavage stimulation fa 99.5 5.3E-14 1.8E-18 116.6 8.2 71 31-101 7-78 (104)
92 1wi8_A EIF-4B, eukaryotic tran 99.5 6.6E-14 2.3E-18 116.3 8.8 72 27-100 10-83 (104)
93 4a8x_A RNA-binding protein wit 99.5 4E-14 1.4E-18 113.5 7.1 70 31-100 3-74 (88)
94 2dh8_A DAZ-associated protein 99.5 8.8E-14 3E-18 115.7 9.3 73 27-100 11-84 (105)
95 2nlw_A Eukaryotic translation 99.5 4.9E-14 1.7E-18 117.7 7.7 72 29-101 12-89 (105)
96 2cqb_A Peptidyl-prolyl CIS-tra 99.5 3.3E-14 1.1E-18 117.6 6.5 72 29-100 9-81 (102)
97 2cqd_A RNA-binding region cont 99.5 9.1E-14 3.1E-18 117.8 9.4 74 26-100 11-85 (116)
98 2cqp_A RNA-binding protein 12; 99.5 4.5E-14 1.5E-18 115.9 7.3 73 28-100 11-84 (98)
99 2kn4_A Immunoglobulin G-bindin 99.5 5.6E-14 1.9E-18 125.4 8.4 95 61-156 2-137 (158)
100 1wez_A HnRNP H', FTP-3, hetero 99.5 8.7E-14 3E-18 115.9 9.0 72 28-101 11-82 (102)
101 2cpf_A RNA binding motif prote 99.5 8.4E-14 2.9E-18 114.2 8.7 71 30-100 3-77 (98)
102 1wel_A RNA-binding protein 12; 99.5 4.7E-14 1.6E-18 121.3 7.3 74 27-101 20-94 (124)
103 1u6f_A Tcubp1, RNA-binding pro 99.5 9.9E-14 3.4E-18 121.2 9.3 75 26-100 36-111 (139)
104 3ex7_B RNA-binding protein 8A; 99.5 9.3E-14 3.2E-18 119.3 8.9 74 27-100 17-91 (126)
105 2ki2_A SS-DNA binding protein 99.5 2.8E-14 9.7E-19 115.2 5.2 69 32-101 1-70 (90)
106 2ek1_A RNA-binding protein 12; 99.5 3.8E-14 1.3E-18 115.5 6.1 73 29-101 12-85 (95)
107 2cq4_A RNA binding motif prote 99.5 3.8E-14 1.3E-18 119.8 6.0 70 30-100 23-93 (114)
108 2cqi_A Nucleolysin TIAR; RNA r 99.5 1.4E-13 4.7E-18 114.1 9.2 73 27-100 10-82 (103)
109 2dgw_A Probable RNA-binding pr 99.5 1.7E-13 5.7E-18 111.0 9.5 71 28-100 6-76 (91)
110 1h2v_Z 20 kDa nuclear CAP bind 99.5 1.8E-13 6.1E-18 122.2 10.6 75 26-100 33-108 (156)
111 2kt5_A RNA and export factor-b 99.5 1.4E-13 4.7E-18 118.2 9.4 73 28-100 31-103 (124)
112 2m2b_A RNA-binding protein 10; 99.5 4.1E-14 1.4E-18 122.9 6.0 72 28-100 19-97 (131)
113 2db1_A Heterogeneous nuclear r 99.5 1.4E-13 4.8E-18 117.6 9.1 73 28-101 13-88 (118)
114 2lmi_A GRSF-1, G-rich sequence 99.5 1.1E-13 3.8E-18 115.9 8.1 84 28-112 7-99 (107)
115 2a3j_A U1 small nuclear ribonu 99.5 1.4E-13 4.7E-18 119.6 8.8 73 27-101 24-100 (127)
116 2j76_E EIF-4B, EIF4B, eukaryot 99.4 7.3E-14 2.5E-18 115.5 6.3 73 27-101 14-88 (100)
117 2err_A Ataxin-2-binding protei 99.4 9.8E-14 3.3E-18 116.7 7.2 74 26-100 23-96 (109)
118 2cqg_A TDP-43, TAR DNA-binding 99.4 3.4E-13 1.2E-17 111.7 10.4 66 27-92 10-76 (103)
119 2dgx_A KIAA0430 protein; RRM d 99.4 1.3E-13 4.5E-18 113.1 7.6 71 28-100 5-79 (96)
120 2dha_A FLJ20171 protein; RRM d 99.4 1.6E-13 5.5E-18 118.5 8.4 81 30-111 21-111 (123)
121 2rs2_A Musashi-1, RNA-binding 99.4 1.3E-13 4.4E-18 116.1 7.5 72 28-100 21-93 (109)
122 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 2.1E-13 7.2E-18 118.8 9.1 74 28-101 59-133 (140)
123 2kn4_A Immunoglobulin G-bindin 99.4 2.2E-13 7.4E-18 121.5 8.9 72 29-100 67-139 (158)
124 2cpy_A RNA-binding protein 12; 99.4 1.2E-13 4.2E-18 117.0 6.7 71 29-100 12-83 (114)
125 1iqt_A AUF1, heterogeneous nuc 99.4 6.6E-14 2.2E-18 109.0 4.6 67 34-101 1-68 (75)
126 2dis_A Unnamed protein product 99.4 2.1E-13 7.2E-18 114.0 8.0 72 29-100 5-81 (109)
127 2jwn_A Embryonic polyadenylate 99.4 2.1E-13 7.2E-18 116.8 8.2 69 31-100 35-104 (124)
128 1x4d_A Matrin 3; structural ge 99.4 1.3E-13 4.6E-18 115.1 6.4 67 25-96 8-75 (102)
129 1rk8_A CG8781-PA, CG8781-PA pr 99.4 4.5E-13 1.5E-17 120.9 10.1 72 29-100 69-141 (165)
130 3q2s_C Cleavage and polyadenyl 99.4 3.1E-13 1.1E-17 128.8 9.3 71 31-101 67-140 (229)
131 1sjq_A Polypyrimidine tract-bi 99.4 2.8E-13 9.5E-18 113.7 7.8 67 29-100 13-81 (105)
132 2xs2_A Deleted in azoospermia- 99.4 1.5E-13 5E-18 113.7 6.0 69 30-100 7-75 (102)
133 2cpi_A CCR4-NOT transcription 99.4 2.6E-13 8.9E-18 114.4 7.4 74 27-100 10-90 (111)
134 1x4a_A Splicing factor, argini 99.4 7.3E-13 2.5E-17 110.9 9.6 73 26-100 16-88 (109)
135 2fc9_A NCL protein; structure 99.4 4.5E-13 1.5E-17 110.5 8.1 70 28-100 11-80 (101)
136 2dnn_A RNA-binding protein 12; 99.4 2.7E-13 9.1E-18 114.6 6.8 69 31-101 15-83 (109)
137 1x4b_A Heterogeneous nuclear r 99.4 3.3E-13 1.1E-17 114.3 7.4 69 31-100 26-95 (116)
138 2dnl_A Cytoplasmic polyadenyla 99.4 2.5E-13 8.4E-18 115.1 5.9 69 29-98 5-80 (114)
139 2lea_A Serine/arginine-rich sp 99.4 1.9E-13 6.7E-18 119.6 5.3 74 27-100 42-116 (135)
140 2ad9_A Polypyrimidine tract-bi 99.4 5.9E-13 2E-17 114.2 8.1 70 26-100 25-96 (119)
141 2ytc_A PRE-mRNA-splicing facto 99.4 9.2E-13 3.2E-17 105.0 8.7 68 28-100 8-76 (85)
142 3r27_A HnRNP L, heterogeneous 99.4 6E-13 2E-17 110.6 7.7 65 28-97 17-81 (100)
143 2hgm_A HNRPF protein, heteroge 99.4 7.9E-13 2.7E-17 114.6 8.3 72 28-101 38-111 (126)
144 2hgn_A Heterogeneous nuclear r 99.4 2.9E-13 9.8E-18 119.3 5.5 72 28-101 42-113 (139)
145 2cpj_A Non-POU domain-containi 99.4 9.4E-13 3.2E-17 108.3 8.3 69 27-100 10-78 (99)
146 2dnq_A RNA-binding protein 4B; 99.4 1.6E-12 5.6E-17 105.0 9.3 66 28-100 4-69 (90)
147 1nu4_A U1A RNA binding domain; 99.4 2.9E-13 9.8E-18 110.7 4.8 71 28-100 4-78 (97)
148 1wex_A Hypothetical protein (r 99.4 1.5E-12 5.3E-17 108.9 9.1 64 28-96 11-74 (104)
149 1why_A Hypothetical protein ri 99.4 1.8E-12 6.2E-17 106.2 9.3 67 28-99 13-79 (97)
150 1x4c_A Splicing factor, argini 99.4 1.5E-12 5.2E-17 109.0 9.0 66 29-100 12-77 (108)
151 2lcw_A RNA-binding protein FUS 99.1 5.7E-14 1.9E-18 119.2 0.0 72 29-100 4-84 (116)
152 2la4_A Nuclear and cytoplasmic 99.4 1.2E-12 4.3E-17 107.9 8.1 67 29-100 24-90 (101)
153 1fj7_A Nucleolin RBD1, protein 99.4 1.5E-13 5.2E-18 113.4 2.4 70 29-100 14-84 (101)
154 2fc8_A NCL protein; structure 99.4 1.9E-12 6.5E-17 106.9 9.0 71 27-100 10-81 (102)
155 2cq1_A PTB-like protein L; RRM 99.4 2E-12 6.8E-17 107.7 9.0 69 27-100 10-80 (101)
156 3md3_A Nuclear and cytoplasmic 99.3 3.4E-12 1.2E-16 113.0 10.8 75 27-101 82-157 (166)
157 3nmr_A Cugbp ELAV-like family 99.3 2.8E-12 9.6E-17 114.7 10.1 73 28-100 91-163 (175)
158 2e5j_A Methenyltetrahydrofolat 99.3 2E-12 6.9E-17 106.0 8.3 70 28-101 15-84 (97)
159 2f3j_A RNA and export factor b 99.3 1.6E-12 5.6E-17 119.0 8.5 71 31-101 87-157 (177)
160 2cpx_A Hypothetical protein FL 99.3 1.5E-12 5.1E-17 109.9 7.7 70 28-100 21-94 (115)
161 2hvz_A Splicing factor, argini 99.3 7.7E-13 2.6E-17 109.2 5.7 64 33-100 1-64 (101)
162 2j8a_A Histone-lysine N-methyl 99.3 1.1E-12 3.8E-17 113.3 6.8 68 33-100 3-85 (136)
163 2xnq_A Nuclear polyadenylated 99.3 2.7E-12 9.3E-17 105.6 8.6 69 25-100 15-84 (97)
164 2jvr_A Nucleolar protein 3; RN 99.3 8.8E-13 3E-17 111.8 5.7 70 29-101 25-95 (111)
165 2kvi_A Nuclear polyadenylated 99.3 2.6E-12 9E-17 105.2 8.5 66 28-100 6-72 (96)
166 1x4f_A Matrin 3; structural ge 99.3 1.2E-12 4E-17 111.2 6.4 68 28-100 21-91 (112)
167 1whx_A Hypothetical protein ri 99.3 1.1E-12 3.9E-17 110.7 6.3 65 31-100 9-73 (111)
168 1x4g_A Nucleolysin TIAR; struc 99.3 2.1E-12 7E-17 108.3 7.5 68 28-100 21-88 (109)
169 1fjc_A Nucleolin RBD2, protein 99.3 9.2E-13 3.2E-17 107.5 5.1 68 29-100 13-80 (96)
170 2g4b_A Splicing factor U2AF 65 99.3 4.2E-12 1.4E-16 113.6 9.8 73 29-101 91-164 (172)
171 2jvo_A Nucleolar protein 3; nu 99.3 2.7E-12 9.2E-17 107.9 7.9 67 27-100 26-92 (108)
172 2i2y_A Fusion protein consists 99.3 2.8E-12 9.5E-17 113.6 8.3 71 27-101 68-138 (150)
173 2cpd_A Apobec-1 stimulating pr 99.3 5.3E-12 1.8E-16 103.8 9.3 68 26-100 9-78 (99)
174 1fxl_A Paraneoplastic encephal 99.3 5.6E-12 1.9E-16 111.7 10.1 73 29-101 85-158 (167)
175 1b7f_A Protein (SXL-lethal pro 99.3 8E-12 2.7E-16 111.1 11.2 73 28-100 85-158 (168)
176 3beg_B Splicing factor, argini 99.3 1.9E-12 6.5E-17 109.9 6.4 66 30-101 14-79 (115)
177 2cq2_A Hypothetical protein LO 99.3 1.6E-12 5.4E-17 110.7 5.6 66 28-98 21-88 (114)
178 2qfj_A FBP-interacting repress 99.3 7.9E-12 2.7E-16 115.9 10.6 71 30-100 123-194 (216)
179 2e5g_A U6 snRNA-specific termi 99.3 9.4E-12 3.2E-16 101.4 9.7 67 29-101 5-72 (94)
180 2dgt_A RNA-binding protein 30; 99.3 5.2E-12 1.8E-16 102.4 8.1 67 27-100 5-71 (92)
181 1wf1_A RNA-binding protein RAL 99.3 4.7E-12 1.6E-16 106.2 7.9 65 29-100 24-89 (110)
182 3pgw_S U1-70K; protein-RNA com 99.3 6.2E-12 2.1E-16 130.8 10.5 72 29-100 99-171 (437)
183 3egn_A RNA-binding protein 40; 99.3 2E-12 7E-17 113.6 5.4 73 28-100 41-119 (143)
184 2dnp_A RNA-binding protein 14; 99.3 5.2E-12 1.8E-16 102.0 7.4 66 28-100 5-70 (90)
185 1e9g_A Ppase, inorganic pyroph 99.3 1.4E-12 4.7E-17 126.6 4.1 45 381-425 22-66 (286)
186 2hzc_A Splicing factor U2AF 65 99.3 4.8E-12 1.6E-16 101.1 6.5 66 30-101 4-80 (87)
187 2dgu_A Heterogeneous nuclear r 99.3 6.1E-12 2.1E-16 104.2 7.4 66 28-100 7-72 (103)
188 2e44_A Insulin-like growth fac 99.3 6.4E-12 2.2E-16 102.5 7.3 71 28-101 11-82 (96)
189 2voo_A Lupus LA protein; RNA-b 99.3 1.1E-11 3.7E-16 115.0 9.5 68 32-100 109-176 (193)
190 1wg1_A KIAA1579 protein, homol 99.3 4.4E-12 1.5E-16 102.2 6.0 65 30-100 3-67 (88)
191 3d2w_A TAR DNA-binding protein 99.3 7E-12 2.4E-16 101.6 7.1 57 28-88 7-63 (89)
192 1x5p_A Negative elongation fac 99.3 1.7E-11 5.7E-16 100.5 9.0 66 28-100 11-76 (97)
193 2cqh_A IGF-II mRNA-binding pro 99.3 4E-12 1.4E-16 103.2 5.2 66 29-100 5-72 (93)
194 2yh0_A Splicing factor U2AF 65 99.3 1.4E-11 4.7E-16 112.7 9.4 71 30-100 112-183 (198)
195 1l3k_A Heterogeneous nuclear r 99.2 1.7E-11 5.8E-16 111.9 9.9 70 30-100 102-172 (196)
196 2cjk_A Nuclear polyadenylated 99.2 7E-12 2.4E-16 111.6 6.9 70 31-101 86-156 (167)
197 4f02_A Polyadenylate-binding p 99.2 1.3E-11 4.3E-16 115.6 8.7 69 31-100 102-170 (213)
198 1sjr_A Polypyrimidine tract-bi 99.2 2.2E-11 7.4E-16 110.0 9.2 69 29-100 43-111 (164)
199 2pe8_A Splicing factor 45; RRM 99.2 3.1E-11 1.1E-15 101.1 8.9 72 30-101 6-84 (105)
200 2e5i_A Heterogeneous nuclear r 99.2 5.4E-11 1.9E-15 102.7 10.1 63 33-100 26-89 (124)
201 3zzy_A Polypyrimidine tract-bi 99.2 2.8E-11 9.7E-16 105.2 8.1 67 30-100 26-93 (130)
202 1wf0_A TDP-43, TAR DNA-binding 99.2 1.7E-11 5.8E-16 98.5 4.9 56 30-89 3-58 (88)
203 2diu_A KIAA0430 protein; struc 99.2 7.7E-11 2.6E-15 96.3 8.4 63 30-101 6-74 (96)
204 2i2y_A Fusion protein consists 99.2 5.3E-11 1.8E-15 105.3 7.9 83 70-156 10-135 (150)
205 3tyt_A Heterogeneous nuclear r 99.2 2.5E-11 8.6E-16 113.5 6.1 71 30-101 121-193 (205)
206 2bz2_A Negative elongation fac 99.1 7.3E-11 2.5E-15 101.2 7.7 66 28-100 35-100 (121)
207 3sde_A Paraspeckle component 1 99.1 1.1E-10 3.9E-15 112.6 8.5 66 31-96 95-160 (261)
208 1fje_B Nucleolin RBD12, protei 99.1 8.8E-11 3E-15 105.5 7.0 68 29-100 96-163 (175)
209 3q46_A TT-ippase; inorganic py 99.1 4.5E-11 1.6E-15 108.7 4.0 52 385-439 1-52 (178)
210 3u1l_A PRE-mRNA-splicing facto 99.1 1.5E-10 5E-15 110.9 7.1 65 29-98 131-204 (240)
211 1jmt_A Splicing factor U2AF 35 99.1 4.6E-11 1.6E-15 99.9 2.6 65 37-101 20-96 (104)
212 2prd_A Pyrophosphate phosphohy 99.0 1.8E-10 6.3E-15 104.5 6.1 51 386-439 1-51 (174)
213 3tht_A Alkylated DNA repair pr 99.0 3.1E-10 1.1E-14 114.1 7.2 69 26-99 12-82 (345)
214 3fq3_A Inorganic pyrophosphata 99.0 2.8E-10 9.6E-15 104.7 6.0 58 379-439 15-73 (197)
215 3pgw_A U1-A; protein-RNA compl 99.0 8E-10 2.7E-14 107.2 9.4 69 28-100 203-272 (282)
216 4fxv_A ELAV-like protein 1; RN 99.0 4.9E-10 1.7E-14 92.5 6.6 56 101-156 30-86 (99)
217 2lea_A Serine/arginine-rich sp 99.0 3E-10 1E-14 99.1 5.3 82 75-156 6-114 (135)
218 2dit_A HIV TAT specific factor 99.0 1.4E-09 4.8E-14 91.6 8.8 70 28-100 11-91 (112)
219 3v4m_A Splicing factor U2AF 65 99.0 4.9E-10 1.7E-14 93.7 5.9 72 30-101 3-87 (105)
220 3s8s_A Histone-lysine N-methyl 99.0 7.4E-10 2.5E-14 93.3 6.9 56 101-156 17-73 (110)
221 1s79_A Lupus LA protein; RRM, 98.9 8.9E-10 3E-14 91.7 6.3 61 95-156 12-76 (103)
222 1qm9_A Polypyrimidine tract-bi 98.9 1.2E-09 4E-14 100.3 7.7 67 30-100 118-186 (198)
223 3p5t_L Cleavage and polyadenyl 98.9 1.2E-09 4.1E-14 88.1 6.1 56 101-156 12-70 (90)
224 3ue2_A Poly(U)-binding-splicin 98.9 2E-09 7E-14 91.9 7.5 71 31-101 19-99 (118)
225 2adc_A Polypyrimidine tract-bi 98.9 2.2E-09 7.4E-14 101.4 8.3 67 30-100 149-217 (229)
226 3pgw_S U1-70K; protein-RNA com 98.9 5.6E-10 1.9E-14 116.0 3.4 61 96-156 104-169 (437)
227 4f25_A Polyadenylate-binding p 98.9 1.3E-09 4.6E-14 92.1 5.2 55 101-156 16-70 (115)
228 3ld3_A Inorganic pyrophosphata 98.9 1.2E-09 4.2E-14 100.6 5.0 58 379-439 15-73 (199)
229 2lxi_A RNA-binding protein 10; 98.9 8.9E-10 3.1E-14 89.4 3.7 54 101-154 12-67 (91)
230 2dnh_A Bruno-like 5, RNA bindi 98.9 3.7E-09 1.3E-13 87.3 7.2 56 101-156 26-81 (105)
231 2krb_A Eukaryotic translation 98.9 2.1E-09 7.1E-14 84.8 5.3 53 103-156 20-72 (81)
232 3ns6_A Eukaryotic translation 98.9 1.5E-09 5.2E-14 89.4 4.7 56 101-156 23-79 (100)
233 3gvf_A Inorganic pyrophosphata 98.9 2.1E-09 7.1E-14 98.8 5.8 58 379-439 15-73 (196)
234 2lkz_A RNA-binding protein 5; 98.8 1.6E-09 5.5E-14 88.9 4.5 54 101-154 20-76 (95)
235 2ywk_A Putative RNA-binding pr 98.8 4.7E-09 1.6E-13 85.0 6.9 56 101-156 27-82 (95)
236 2pe8_A Splicing factor 45; RRM 98.8 3.9E-09 1.3E-13 88.2 6.4 54 103-156 26-81 (105)
237 2do4_A Squamous cell carcinoma 98.8 5E-09 1.7E-13 85.8 6.9 56 101-156 28-83 (100)
238 1jmt_A Splicing factor U2AF 35 98.8 2.6E-09 9E-14 89.1 5.2 54 103-156 39-93 (104)
239 2bqx_A Inorganic pyrophosphata 98.8 2.3E-09 7.8E-14 97.2 4.8 49 387-439 2-50 (173)
240 3bs9_A Nucleolysin TIA-1 isofo 98.8 6.5E-09 2.2E-13 82.6 6.9 56 101-156 17-73 (87)
241 3md1_A Nuclear and cytoplasmic 98.8 6.7E-09 2.3E-13 81.8 6.9 56 101-156 12-68 (83)
242 2fy1_A RNA-binding motif prote 98.8 6E-09 2E-13 88.3 6.9 56 101-156 18-73 (116)
243 2div_A TRNA selenocysteine ass 98.8 5.3E-09 1.8E-13 85.4 6.2 62 95-156 10-77 (99)
244 2dhg_A TRNA selenocysteine ass 98.8 8.3E-09 2.8E-13 85.0 7.4 55 101-155 20-75 (104)
245 2dnz_A Probable RNA-binding pr 98.8 9.7E-09 3.3E-13 83.1 7.5 56 101-156 16-72 (95)
246 1x5o_A RNA binding motif, sing 98.8 9E-09 3.1E-13 86.4 7.5 56 101-156 36-91 (114)
247 2la6_A RNA-binding protein FUS 98.8 9E-09 3.1E-13 84.2 7.1 56 101-156 24-88 (99)
248 1whw_A Hypothetical protein ri 98.8 6.5E-09 2.2E-13 84.9 6.2 56 101-156 19-75 (99)
249 2mss_A Protein (musashi1); RNA 98.8 5.8E-09 2E-13 80.7 5.6 55 101-156 10-65 (75)
250 3ulh_A THO complex subunit 4; 98.8 7.7E-09 2.6E-13 85.7 6.6 56 101-156 40-95 (107)
251 3d53_A Inorganic pyrophosphata 98.8 3.9E-09 1.3E-13 95.5 5.1 49 387-439 3-52 (173)
252 2hgn_A Heterogeneous nuclear r 98.8 4.2E-09 1.4E-13 92.6 5.2 60 95-156 47-110 (139)
253 2d9o_A DNAJ (HSP40) homolog, s 98.8 2.9E-08 9.8E-13 82.3 9.7 60 32-95 10-76 (100)
254 2d9p_A Polyadenylate-binding p 98.8 9.2E-09 3.2E-13 84.7 6.7 55 101-156 26-80 (103)
255 3mdf_A Peptidyl-prolyl CIS-tra 98.8 6.1E-09 2.1E-13 82.4 5.3 56 101-156 18-74 (85)
256 1p27_B RNA-binding protein 8A; 98.8 1.2E-08 4E-13 84.4 7.2 56 101-156 34-90 (106)
257 1x5u_A Splicing factor 3B subu 98.8 9.3E-09 3.2E-13 84.9 6.4 56 101-156 26-82 (105)
258 2do0_A HnRNP M, heterogeneous 98.8 1.1E-08 3.8E-13 85.7 6.8 56 101-156 26-81 (114)
259 2x1f_A MRNA 3'-END-processing 98.8 9E-09 3.1E-13 83.7 6.0 56 101-156 13-69 (96)
260 2au7_A Inorganic pyrophosphata 98.8 5.8E-09 2E-13 94.5 5.3 50 387-439 1-51 (175)
261 3ucg_A Polyadenylate-binding p 98.8 1.4E-08 4.7E-13 81.1 7.0 55 101-156 17-72 (89)
262 2m2b_A RNA-binding protein 10; 98.7 4.9E-09 1.7E-13 90.6 4.5 59 95-154 24-89 (131)
263 1p1t_A Cleavage stimulation fa 98.7 1.1E-08 3.8E-13 84.1 6.4 56 101-156 19-75 (104)
264 1x4e_A RNA binding motif, sing 98.7 5.9E-09 2E-13 82.7 4.5 56 101-156 16-72 (85)
265 2dgs_A DAZ-associated protein 98.7 1.5E-08 5.2E-13 82.7 7.0 55 101-156 21-76 (99)
266 1x5t_A Splicing factor 3B subu 98.7 1.1E-08 3.7E-13 82.9 6.1 56 101-156 16-73 (96)
267 2dnm_A SRP46 splicing factor; 98.7 1E-08 3.6E-13 84.4 5.9 56 101-156 24-80 (103)
268 1x5s_A Cold-inducible RNA-bind 98.7 1.2E-08 4E-13 83.8 6.2 56 101-156 23-79 (102)
269 2cqc_A Arginine/serine-rich sp 98.7 1.3E-08 4.3E-13 82.3 6.3 56 101-156 26-82 (95)
270 2cq0_A Eukaryotic translation 98.7 1.2E-08 4.2E-13 84.0 6.2 56 101-156 26-82 (103)
271 2e5h_A Zinc finger CCHC-type a 98.7 1.3E-08 4.5E-13 82.2 6.3 56 101-156 27-83 (94)
272 2jwn_A Embryonic polyadenylate 98.7 9.2E-09 3.2E-13 87.6 5.6 61 95-156 37-102 (124)
273 1uaw_A Mouse-musashi-1; RNP-ty 98.7 1.2E-08 4.2E-13 79.1 5.9 52 101-152 11-63 (77)
274 2jrs_A RNA-binding protein 39; 98.7 1.5E-08 5.2E-13 84.7 6.8 56 101-156 37-93 (108)
275 2ki2_A SS-DNA binding protein 98.7 9.9E-09 3.4E-13 82.3 5.4 55 101-156 12-67 (90)
276 2cpz_A CUG triplet repeat RNA- 98.7 1.4E-08 4.7E-13 85.4 6.4 56 101-156 36-92 (115)
277 2nlw_A Eukaryotic translation 98.7 7.9E-09 2.7E-13 85.8 4.9 53 103-156 34-86 (105)
278 2dgp_A Bruno-like 4, RNA bindi 98.7 1.1E-08 3.9E-13 84.5 5.8 56 101-156 24-80 (106)
279 2cph_A RNA binding motif prote 98.7 1.3E-08 4.6E-13 84.1 6.3 56 101-156 26-84 (107)
280 1wez_A HnRNP H', FTP-3, hetero 98.7 1.4E-08 4.9E-13 84.1 6.4 54 101-156 26-79 (102)
281 3v4m_A Splicing factor U2AF 65 98.7 7.3E-09 2.5E-13 86.5 4.6 54 103-156 28-84 (105)
282 2dgo_A Cytotoxic granule-assoc 98.7 1.8E-08 6.3E-13 84.6 7.1 56 101-156 26-82 (115)
283 2dgv_A HnRNP M, heterogeneous 98.7 2E-08 6.9E-13 80.7 6.9 55 101-156 19-73 (92)
284 2kt5_A RNA and export factor-b 98.7 1.6E-08 5.4E-13 86.3 6.5 56 101-156 46-101 (124)
285 2wbr_A GW182, gawky, LD47780P; 98.7 7.4E-09 2.5E-13 83.6 4.1 51 101-156 18-68 (89)
286 1wg5_A Heterogeneous nuclear r 98.7 1.6E-08 5.4E-13 83.8 6.2 55 101-156 26-81 (104)
287 2kxn_B Transformer-2 protein h 98.7 2.6E-08 9E-13 86.1 7.5 56 101-156 57-113 (129)
288 3n9u_C Cleavage and polyadenyl 98.7 1.8E-08 6.2E-13 90.1 6.7 62 95-156 56-124 (156)
289 2j76_E EIF-4B, EIF4B, eukaryot 98.7 1.1E-08 3.9E-13 84.0 4.9 60 95-156 20-85 (100)
290 2khc_A Testis-specific RNP-typ 98.7 1.9E-08 6.4E-13 84.9 6.3 56 101-156 51-107 (118)
291 2cqb_A Peptidyl-prolyl CIS-tra 98.7 1.2E-08 4.1E-13 83.8 4.7 56 101-156 23-79 (102)
292 3s7r_A Heterogeneous nuclear r 98.7 2.6E-08 9E-13 79.2 6.6 50 101-150 22-72 (87)
293 1oo0_B CG8781-PA, drosophila Y 98.7 2E-08 6.9E-13 83.7 6.1 56 101-156 37-93 (110)
294 2ek1_A RNA-binding protein 12; 98.7 1.6E-08 5.5E-13 81.8 5.4 56 101-156 26-82 (95)
295 1rk8_A CG8781-PA, CG8781-PA pr 98.7 2.4E-08 8.1E-13 89.7 6.8 56 101-156 83-139 (165)
296 2dh8_A DAZ-associated protein 98.7 2.6E-08 8.8E-13 82.3 6.5 60 96-156 18-82 (105)
297 2cqp_A RNA-binding protein 12; 98.7 1.8E-08 6.1E-13 82.1 5.4 56 101-156 26-82 (98)
298 2cq3_A RNA-binding protein 9; 98.7 3E-08 1E-12 81.6 6.8 55 101-156 26-80 (103)
299 1x4h_A RNA-binding protein 28; 98.7 2.3E-08 7.8E-13 83.3 6.1 52 101-152 26-78 (111)
300 2db1_A Heterogeneous nuclear r 98.7 2.1E-08 7.1E-13 85.2 5.9 55 101-156 28-85 (118)
301 2hgl_A HNRPF protein, heteroge 98.7 1.7E-08 5.8E-13 88.4 5.4 55 101-156 55-112 (136)
302 2cpf_A RNA binding motif prote 98.7 2.1E-08 7.1E-13 81.7 5.7 56 101-156 16-75 (98)
303 2cq4_A RNA binding motif prote 98.7 2.2E-08 7.6E-13 84.0 5.9 55 101-156 36-91 (114)
304 2xs2_A Deleted in azoospermia- 98.7 1.7E-08 5.7E-13 83.0 4.9 49 101-149 20-68 (102)
305 2dnn_A RNA-binding protein 12; 98.7 2.1E-08 7.2E-13 84.4 5.5 54 101-156 27-80 (109)
306 2err_A Ataxin-2-binding protei 98.7 2.3E-08 7.7E-13 83.6 5.6 55 101-156 40-94 (109)
307 2lmi_A GRSF-1, G-rich sequence 98.7 2.1E-08 7.1E-13 83.5 5.3 55 101-156 22-79 (107)
308 2cq2_A Hypothetical protein LO 98.6 1.6E-08 5.4E-13 85.8 4.6 51 101-156 38-88 (114)
309 2cpy_A RNA-binding protein 12; 98.6 2.1E-08 7E-13 84.5 5.2 55 101-156 26-81 (114)
310 3ex7_B RNA-binding protein 8A; 98.6 3E-08 1E-12 84.7 6.2 56 101-156 33-89 (126)
311 1iqt_A AUF1, heterogeneous nuc 98.6 1.9E-08 6.5E-13 77.7 4.5 53 101-154 10-63 (75)
312 2cpe_A RNA-binding protein EWS 98.6 2.9E-08 9.8E-13 83.1 5.9 56 101-156 26-90 (113)
313 1u6f_A Tcubp1, RNA-binding pro 98.6 2.5E-08 8.4E-13 86.7 5.6 56 101-156 53-109 (139)
314 2cqi_A Nucleolysin TIAR; RNA r 98.6 3E-08 1E-12 81.6 5.7 55 101-156 26-80 (103)
315 2dgw_A Probable RNA-binding pr 98.6 3.8E-08 1.3E-12 79.1 6.2 54 101-156 21-74 (91)
316 2dha_A FLJ20171 protein; RRM d 98.6 2.5E-08 8.7E-13 85.7 5.4 70 85-155 13-91 (123)
317 4a8x_A RNA-binding protein wit 98.6 2E-08 6.7E-13 79.9 4.1 56 101-156 15-72 (88)
318 1sjq_A Polypyrimidine tract-bi 98.6 2.5E-08 8.5E-13 83.4 4.9 48 101-153 27-74 (105)
319 2dng_A Eukaryotic translation 98.6 4.8E-08 1.7E-12 80.4 6.5 54 101-156 26-80 (103)
320 3s6e_A RNA-binding protein 39; 98.6 8.2E-08 2.8E-12 81.4 8.0 79 30-111 5-99 (114)
321 2rs2_A Musashi-1, RNA-binding 98.6 4.7E-08 1.6E-12 81.8 6.3 52 101-152 36-88 (109)
322 1wi8_A EIF-4B, eukaryotic tran 98.6 3.8E-08 1.3E-12 81.2 5.5 54 101-156 26-81 (104)
323 3ue2_A Poly(U)-binding-splicin 98.6 2.4E-08 8.2E-13 85.2 4.4 54 103-156 38-96 (118)
324 1wel_A RNA-binding protein 12; 98.6 5E-08 1.7E-12 83.3 6.2 55 101-156 36-91 (124)
325 2cqd_A RNA-binding region cont 98.6 4.5E-08 1.5E-12 82.4 5.9 53 101-153 28-81 (116)
326 2cpi_A CCR4-NOT transcription 98.6 3.7E-08 1.3E-12 82.5 5.3 56 101-156 26-88 (111)
327 3q2s_C Cleavage and polyadenyl 98.6 5E-08 1.7E-12 92.7 6.8 61 96-156 70-137 (229)
328 2dgx_A KIAA0430 protein; RRM d 98.6 3.8E-08 1.3E-12 80.2 5.1 54 101-156 20-77 (96)
329 2a3j_A U1 small nuclear ribonu 98.6 5.9E-08 2E-12 83.8 6.4 54 101-156 40-97 (127)
330 1h2v_Z 20 kDa nuclear CAP bind 98.6 7.3E-08 2.5E-12 85.5 7.2 56 101-156 50-106 (156)
331 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.6 4.5E-08 1.5E-12 84.7 5.7 56 101-156 74-130 (140)
332 2d9o_A DNAJ (HSP40) homolog, s 98.6 6.9E-08 2.4E-12 80.0 6.3 50 100-153 27-76 (100)
333 2dnl_A Cytoplasmic polyadenyla 98.6 2.4E-08 8.1E-13 84.1 3.5 56 95-151 9-72 (114)
334 2cqg_A TDP-43, TAR DNA-binding 98.6 8.2E-08 2.8E-12 78.9 6.5 50 101-150 26-76 (103)
335 1x4b_A Heterogeneous nuclear r 98.6 6.5E-08 2.2E-12 81.4 5.8 55 101-156 38-93 (116)
336 1x4d_A Matrin 3; structural ge 98.5 3.6E-08 1.2E-12 82.0 3.8 48 101-153 27-74 (102)
337 2dis_A Unnamed protein product 98.5 7.2E-08 2.5E-12 80.0 5.5 52 101-152 19-73 (109)
338 2f3j_A RNA and export factor b 98.5 9.1E-08 3.1E-12 87.2 6.5 56 101-156 99-154 (177)
339 3r27_A HnRNP L, heterogeneous 98.5 7E-08 2.4E-12 79.9 5.2 49 101-154 32-80 (100)
340 1owx_A Lupus LA protein, SS-B, 98.5 2.7E-07 9.2E-12 79.0 8.4 70 26-100 12-85 (121)
341 1x4a_A Splicing factor, argini 98.5 1.4E-07 4.6E-12 78.5 6.2 54 101-156 33-86 (109)
342 2hvz_A Splicing factor, argini 98.5 7.9E-08 2.7E-12 78.7 4.6 52 101-156 11-62 (101)
343 1sjr_A Polypyrimidine tract-bi 98.5 2.2E-07 7.6E-12 83.7 7.9 54 101-157 57-110 (164)
344 3s6e_A RNA-binding protein 39; 98.5 8.8E-08 3E-12 81.2 4.8 51 103-156 30-80 (114)
345 1whx_A Hypothetical protein ri 98.5 1.2E-07 4E-12 79.6 5.4 51 101-156 21-71 (111)
346 2cpj_A Non-POU domain-containi 98.5 1.5E-07 5.1E-12 76.8 5.9 51 101-156 26-76 (99)
347 3lqv_A PRE-mRNA branch site pr 98.5 2E-07 6.9E-12 78.1 6.8 54 101-156 19-72 (115)
348 2fc9_A NCL protein; structure 98.5 1.1E-07 3.7E-12 77.9 4.9 53 101-156 26-78 (101)
349 2j8a_A Histone-lysine N-methyl 98.5 1.2E-07 4.2E-12 81.8 5.2 56 101-156 17-83 (136)
350 2lcw_A RNA-binding protein FUS 97.9 1.9E-08 6.3E-13 84.8 0.0 61 96-156 9-82 (116)
351 2jvr_A Nucleolar protein 3; RN 98.5 9.7E-08 3.3E-12 80.6 4.4 53 101-156 39-92 (111)
352 2ytc_A PRE-mRNA-splicing facto 98.5 2.1E-07 7.1E-12 73.5 6.0 51 101-156 23-74 (85)
353 2hgm_A HNRPF protein, heteroge 98.5 1.6E-07 5.5E-12 81.0 5.7 57 96-154 44-106 (126)
354 3tr4_A Inorganic pyrophosphata 98.5 1.3E-07 4.5E-12 85.8 5.3 47 389-439 6-53 (178)
355 1wex_A Hypothetical protein (r 98.5 1.2E-07 4.2E-12 78.9 4.8 49 101-154 26-74 (104)
356 1why_A Hypothetical protein ri 98.5 2.1E-07 7.3E-12 75.6 6.1 51 101-156 28-78 (97)
357 1x5p_A Negative elongation fac 98.4 2.1E-07 7.2E-12 75.7 6.0 51 101-156 24-74 (97)
358 1x4c_A Splicing factor, argini 98.4 1.9E-07 6.4E-12 77.7 5.8 50 101-156 26-75 (108)
359 2cpx_A Hypothetical protein FL 98.4 7.9E-08 2.7E-12 80.5 3.4 56 101-156 36-92 (115)
360 3beg_B Splicing factor, argini 98.4 1.9E-07 6.4E-12 78.8 5.7 50 101-156 27-76 (115)
361 2ad9_A Polypyrimidine tract-bi 98.4 1.4E-07 4.8E-12 80.6 4.8 48 101-153 42-89 (119)
362 2la4_A Nuclear and cytoplasmic 98.4 2.3E-07 7.7E-12 75.9 5.8 51 101-156 38-88 (101)
363 3zzy_A Polypyrimidine tract-bi 98.4 2.4E-07 8.2E-12 80.4 6.1 53 101-157 39-92 (130)
364 2cq1_A PTB-like protein L; RRM 98.4 1.7E-07 5.7E-12 77.7 4.8 47 101-152 26-72 (101)
365 2kvi_A Nuclear polyadenylated 98.4 3.8E-07 1.3E-11 74.1 6.8 49 101-156 22-70 (96)
366 2bz2_A Negative elongation fac 98.4 2.8E-07 9.7E-12 78.7 6.2 51 101-156 48-98 (121)
367 2dnq_A RNA-binding protein 4B; 98.4 3.6E-07 1.2E-11 73.2 6.5 49 101-156 19-67 (90)
368 2e5i_A Heterogeneous nuclear r 98.4 3.7E-07 1.3E-11 78.5 6.9 52 101-157 36-88 (124)
369 2dit_A HIV TAT specific factor 98.4 2.9E-07 9.8E-12 77.2 5.9 51 103-156 39-89 (112)
370 2e5j_A Methenyltetrahydrofolat 98.4 3.2E-07 1.1E-11 74.6 6.0 52 101-156 30-81 (97)
371 1fj7_A Nucleolin RBD1, protein 98.4 6.2E-08 2.1E-12 79.4 1.6 54 101-156 28-82 (101)
372 1x4f_A Matrin 3; structural ge 98.4 1.7E-07 5.8E-12 79.2 4.4 47 102-153 38-84 (112)
373 2voo_A Lupus LA protein; RNA-b 98.4 3.4E-07 1.2E-11 84.5 6.8 59 95-153 110-172 (193)
374 1nu4_A U1A RNA binding domain; 98.4 9.7E-08 3.3E-12 77.4 2.7 54 101-156 19-76 (97)
375 2jvo_A Nucleolar protein 3; nu 98.4 2.8E-07 9.5E-12 77.0 5.5 55 95-156 32-90 (108)
376 1x4g_A Nucleolysin TIAR; struc 98.4 2.8E-07 9.5E-12 76.7 5.3 51 101-156 36-86 (109)
377 2xnq_A Nuclear polyadenylated 98.4 3.9E-07 1.3E-11 74.4 6.1 49 101-156 34-82 (97)
378 3d2w_A TAR DNA-binding protein 98.4 3.3E-07 1.1E-11 73.8 4.9 42 101-146 22-63 (89)
379 1fjc_A Nucleolin RBD2, protein 98.3 2E-07 6.7E-12 75.5 3.3 52 101-156 27-78 (96)
380 3egn_A RNA-binding protein 40; 98.3 3E-07 1E-11 80.2 4.7 56 101-156 56-117 (143)
381 1qez_A Ppase, S-ppase, protein 98.3 4.3E-07 1.5E-11 82.2 5.5 47 384-439 2-48 (173)
382 1wf1_A RNA-binding protein RAL 98.3 5E-07 1.7E-11 75.2 5.3 55 95-156 28-87 (110)
383 3u1l_A PRE-mRNA-splicing facto 98.3 4.6E-07 1.6E-11 86.6 4.9 50 103-157 156-205 (240)
384 2dgu_A Heterogeneous nuclear r 98.2 8.6E-07 2.9E-11 72.9 4.7 49 101-156 22-70 (103)
385 2hzc_A Splicing factor U2AF 65 98.2 1.1E-06 3.8E-11 69.5 5.2 50 101-156 17-77 (87)
386 1wg1_A KIAA1579 protein, homol 98.2 8.9E-07 3E-11 70.7 4.6 50 101-156 16-65 (88)
387 2dgt_A RNA-binding protein 30; 98.2 1.3E-06 4.4E-11 70.2 5.3 49 101-156 21-69 (92)
388 2fc8_A NCL protein; structure 98.2 1.5E-06 5.2E-11 71.0 5.7 53 101-156 26-79 (102)
389 2dnp_A RNA-binding protein 14; 98.2 1.3E-06 4.4E-11 69.9 5.0 49 101-156 20-68 (90)
390 2cqh_A IGF-II mRNA-binding pro 98.2 8.9E-07 3E-11 71.2 3.9 50 101-156 19-70 (93)
391 3dxb_A Thioredoxin N-terminall 98.2 2.6E-06 8.7E-11 79.8 7.5 58 44-101 141-203 (222)
392 3tht_A Alkylated DNA repair pr 98.2 1.1E-06 3.8E-11 88.3 5.3 53 101-158 31-83 (345)
393 2e5g_A U6 snRNA-specific termi 98.2 2.9E-06 1E-10 68.4 6.3 51 101-156 19-69 (94)
394 2e44_A Insulin-like growth fac 98.1 2.8E-06 9.7E-11 68.5 5.9 53 101-156 26-79 (96)
395 3dxb_A Thioredoxin N-terminall 98.1 2.5E-06 8.4E-11 79.9 6.2 55 102-156 141-200 (222)
396 2cpd_A Apobec-1 stimulating pr 98.1 2.5E-06 8.5E-11 69.5 5.4 49 101-156 26-76 (99)
397 1wf0_A TDP-43, TAR DNA-binding 98.1 1.2E-06 4.1E-11 69.8 3.2 43 101-147 16-58 (88)
398 2dnr_A Synaptojanin-1; RRM dom 98.1 4.6E-06 1.6E-10 67.4 5.5 64 29-100 4-75 (91)
399 2diu_A KIAA0430 protein; struc 98.0 5.9E-06 2E-10 67.4 5.9 49 101-158 20-73 (96)
400 1ufw_A Synaptojanin 2; RNP dom 97.8 9.3E-06 3.2E-10 66.0 2.4 66 28-101 11-85 (95)
401 1owx_A Lupus LA protein, SS-B, 97.3 0.00022 7.6E-09 60.8 5.0 46 102-152 31-77 (121)
402 2dnr_A Synaptojanin-1; RRM dom 97.3 0.00018 6.3E-09 58.0 4.2 44 105-156 30-73 (91)
403 1sxv_A Inorganic pyrophosphata 97.2 7.2E-05 2.4E-09 67.4 1.4 23 400-422 11-33 (172)
404 1ufw_A Synaptojanin 2; RNP dom 97.0 0.00037 1.3E-08 56.6 3.1 44 105-156 39-82 (95)
405 2l9w_A U4/U6 snRNA-associated- 96.9 0.0017 5.7E-08 54.0 6.7 77 29-110 18-103 (117)
406 1uw4_A UPF3X; nonsense mediate 96.3 0.013 4.4E-07 47.2 7.9 68 33-100 2-72 (91)
407 1whv_A Poly(A)-specific ribonu 96.1 0.015 5.1E-07 47.3 7.1 56 31-94 15-70 (100)
408 3ctr_A Poly(A)-specific ribonu 95.9 0.014 4.7E-07 47.6 5.9 53 34-94 8-60 (101)
409 2dhx_A Poly (ADP-ribose) polym 94.8 0.17 5.8E-06 41.5 9.1 57 29-92 5-66 (104)
410 1wey_A Calcipressin 1; structu 93.9 0.065 2.2E-06 44.1 4.9 66 31-101 4-74 (104)
411 2l08_A Regulator of nonsense t 93.5 0.054 1.8E-06 44.0 3.7 70 31-100 8-80 (97)
412 1wwh_A Nucleoporin 35, nucleop 93.4 0.14 4.9E-06 43.1 6.2 65 29-100 21-85 (119)
413 3pq1_A Poly(A) RNA polymerase; 91.8 0.075 2.6E-06 55.1 2.9 57 31-92 52-108 (464)
414 2l9w_A U4/U6 snRNA-associated- 91.3 0.41 1.4E-05 39.7 6.2 53 99-156 30-87 (117)
415 1wwh_A Nucleoporin 35, nucleop 88.4 0.53 1.8E-05 39.6 4.8 48 103-156 36-83 (119)
416 1wey_A Calcipressin 1; structu 81.0 2.2 7.6E-05 34.9 5.1 56 97-157 17-72 (104)
417 3p3d_A Nucleoporin 53; structu 79.4 1.9 6.6E-05 36.8 4.4 78 31-110 6-104 (132)
418 1uw4_A UPF3X; nonsense mediate 75.7 11 0.00037 29.9 7.6 58 101-158 12-72 (91)
419 3d45_A Poly(A)-specific ribonu 71.6 6.8 0.00023 40.8 7.1 54 33-94 441-494 (507)
420 3pq1_A Poly(A) RNA polymerase; 71.0 2 7E-05 44.3 2.9 47 100-150 62-108 (464)
421 1whv_A Poly(A)-specific ribonu 69.1 9.2 0.00032 30.9 5.7 45 101-152 26-70 (100)
422 3ctr_A Poly(A)-specific ribonu 67.7 8.7 0.0003 31.1 5.3 46 100-152 15-60 (101)
423 3p3d_A Nucleoporin 53; structu 64.2 4.5 0.00015 34.5 3.1 53 103-156 19-86 (132)
424 2dhx_A Poly (ADP-ribose) polym 35.2 67 0.0023 26.1 5.5 48 101-155 19-71 (104)
425 2l08_A Regulator of nonsense t 26.0 70 0.0024 25.6 4.1 59 101-159 20-81 (97)
426 3isu_A RAS GTPase-activating-l 26.0 44 0.0015 27.9 3.0 41 409-449 47-91 (121)
No 1
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Probab=100.00 E-value=2e-67 Score=510.13 Aligned_cols=221 Identities=57% Similarity=0.980 Sum_probs=208.9
Q ss_pred HHHhcCCCcccCCCCCc-ccccccCCccccccccccceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCCC
Q psy300 147 AILKSNKKPYKGSENGL-ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHH 225 (451)
Q Consensus 147 Ai~~ln~riy~~~~~G~-iSp~hdiPl~v~~~p~~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~ 225 (451)
+..++++|+||.+ +|. +|+||++|++.+..+..+|++||||+||++|||+++++++|||+||.++|++|+++++||++
T Consensus 9 ~~~t~~~r~~~~~-~g~~~sp~hdIp~~~~~~~~~~nvVIEIP~gs~~KyEidk~~~~nPIkqd~k~G~lr~dr~l~~~~ 87 (286)
T 1e9g_A 9 AKNTLEYKVYIEK-DGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFVRNCFPHH 87 (286)
T ss_dssp ETTSTTCEEEEEE-TTEEECTTTTSCSEEETTTTEEEEEEEECTTCCBCEEECTTSTTCCEEECEETTEECBCCEETTCC
T ss_pred CCCCcceEEEEEe-CCeecCchhhCCCCCCCCCCEEEEEEEECCCCCeEEEEccCCCCCcchhhhcCCcEEEEeccCCCC
Confidence 3567889999988 476 99999999987655589999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCccCCCCCCCCcCCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecCCccccC
Q psy300 226 GYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAK 305 (451)
Q Consensus 226 ~yp~nYG~iP~T~~~p~~~~~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~d~~~~~ 305 (451)
+|||||||||||||||++.++.|+++|||||||||||++.++.||++++|||||+|+|+|+||+|||||||+++||+|++
T Consensus 88 ~YP~NYGfIPqTledp~~~~~~t~~~gDgDPLDVlvi~~~p~~pG~vi~vr~IGvl~MiDege~D~KIIaV~~~Dp~~~~ 167 (286)
T 1e9g_A 88 GYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKALGIMALLDEGETDWKVIAIDINDPLAPK 167 (286)
T ss_dssp SCSSEEEECSSCCCCTTSEETTTTEEBCSSCCEEEECCSSCCCTTCEEEEEEEEEECEEETTEECCEEEEEETTSTTGGG
T ss_pred CCccCcccCcccccCcccccccCCCCCCCCceEEEEecCccCCCccEEEEEEeEEEEeccCCCCCceEEEEeCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccCcchHHHHHHHhhhccCCCCCcccc----cCCCcchhhhhhhHHHHHHHHHHhhcccc
Q psy300 306 LNDVADIETHFPGYLKATNEWFKIYKIPDGKPENV----LNTRVEGESSQGFIPGCRGRTEQVVSSRL 369 (451)
Q Consensus 306 i~~~~d~~~~~p~~~~~i~~~F~~yk~~~gk~~~~----~~~~~~~~~~~~~i~~~~~~~~~~i~~~~ 369 (451)
|+|++||++++|+++++|+|||++||.++||++|. .+|.|+ +.|+++|++||++|+++++|..
T Consensus 168 i~di~Dl~~~~p~~l~~i~~fF~~YK~leGK~~n~~~~~~~~~~~-~~A~~vI~~~~~~~~~l~~~~~ 234 (286)
T 1e9g_A 168 LNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPENQFAFSGEAKNK-KYALDIIKETHDSWKQLIAGKS 234 (286)
T ss_dssp CCSHHHHHHHSTTHHHHHHHHHHHTTGGGTCCCCEEGGGGCCBCH-HHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCHHHhchhhHHHHHHHHHHHHHhcCcCCCCcceeEecCcCCCH-HHHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999763 577774 6779999999999999999875
No 2
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=100.00 E-value=3.6e-58 Score=419.05 Aligned_cols=175 Identities=26% Similarity=0.487 Sum_probs=163.8
Q ss_pred ccccccCCccccccccccceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCC
Q psy300 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDE 243 (451)
Q Consensus 164 iSp~hdiPl~v~~~p~~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~ 243 (451)
+|+||++|++. ..+..++++||||+||++|||+++ ++|.++++|.+|+++.||+|||||||||
T Consensus 1 ~spwhdi~~g~-~~p~~~nvvIEIP~gs~~KyE~dk-----------~~g~i~~DR~l~~~~~YP~NYGfIP~Tl----- 63 (178)
T 3q46_A 1 MNPFHELEPGP-EVPEVVYALIEIPKGSRNKYELDK-----------ATGLLKLDRVLYSPFFYPVDYGIIPQTW----- 63 (178)
T ss_dssp CCTTTTSCSCS-BTTTBCCCEEEECTTCCEEEEECT-----------TTSCEEEEEECSSSCCCSSEEEECTTCC-----
T ss_pred CCccccCCCCC-CCCCEEEEEEEECCCCCeeEEECC-----------CCCCEEEeecccCCCCCCcccccCCCcc-----
Confidence 58999999975 478999999999999999999986 5688999999999999999999999999
Q ss_pred CCcCCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecCCccccCCCCcccccccCcchHHHH
Q psy300 244 TDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKAT 323 (451)
Q Consensus 244 ~~~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~d~~~~~i~~~~d~~~~~p~~~~~i 323 (451)
++||||||||||++.++.||++++|||||+|+|+|+||+|||||||+++||+|++|+|++||+++ ++++|
T Consensus 64 -------~~DgDPlDvlvl~~~~~~pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~Dp~~~~i~di~Dl~~~---~l~~i 133 (178)
T 3q46_A 64 -------YDDGDPFDIMVIMREPVYPLTIIEARPIGIMKMEDSGDKDWKVLAVPVEDPYFNDWKDISDVPKA---FLDEI 133 (178)
T ss_dssp -------BTTTBCCEEEECCSSCCCTTCBC-CEEEEEEEEEETTEECCEEEEECTTCGGGTTCCSGGGSCHH---HHHHH
T ss_pred -------CCCCCeeEEEEEcCCCCCCceEEEEEEEEEEEeecCCCccceEEEeeCCCccccccCChHHCCHH---HHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999864 99999
Q ss_pred HHHhhhccCCCCCcccccCCCcchhhhhhhHHHHHHHHHHhhc
Q psy300 324 NEWFKIYKIPDGKPENVLNTRVEGESSQGFIPGCRGRTEQVVS 366 (451)
Q Consensus 324 ~~~F~~yk~~~gk~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~ 366 (451)
+|||++||.++||++++++|.|+ ++|+++|++||++|+++..
T Consensus 134 ~~fF~~YK~legK~v~~~g~~~~-~~A~~~I~~~~~~~~~~~~ 175 (178)
T 3q46_A 134 AHFFQRYKELQGKTTKIEGWGNA-EEAKREILRAIEMYKEKFG 175 (178)
T ss_dssp HHHHHHTTGGGTCCEEEEEEEEH-HHHHHHHHHHHHHHHHC-C
T ss_pred HHHHHHhcCcCCCceEeccccCH-HHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999985 7889999999999999654
No 3
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=100.00 E-value=1.4e-55 Score=400.99 Aligned_cols=171 Identities=23% Similarity=0.398 Sum_probs=162.5
Q ss_pred cccccCCccccccccccceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCCC
Q psy300 165 SPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDET 244 (451)
Q Consensus 165 Sp~hdiPl~v~~~p~~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~~ 244 (451)
|+||++|++.+ .+..+|++||||+||++|||+++ ++|.+++++.+|+++.||+|||||||||
T Consensus 1 ~~~h~ip~~~~-~p~~~nvvIEIP~gs~~KyE~dk-----------~~g~i~~DR~l~~~~~YP~NYGfIP~Tl------ 62 (174)
T 2prd_A 1 ANLKSLPVGDK-APEVVHMVIEVPRGSGNKYEYDP-----------DLGAIKLDRVLPGAQFYPGDYGFIPSTL------ 62 (174)
T ss_dssp CCGGGSCCCTT-TTTEEEEEEEECTTCCEEEEEET-----------TTTEEEEEEECSSSCCCSSEEEECSSCC------
T ss_pred CCcccCCCCCC-CCCEEEEEEEecCCCCeEEEEec-----------CCCCEEEeeecCCCCcCCcccccccCcc------
Confidence 68999999865 47899999999999999999986 5799999999999999999999999999
Q ss_pred CcCCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecCCccccCCCCcccccccCcchHHHHH
Q psy300 245 DAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATN 324 (451)
Q Consensus 245 ~~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~d~~~~~i~~~~d~~~~~p~~~~~i~ 324 (451)
+|||||||||||++.++.||++++||+||+|+|+|+||+|||||||+++||+|++|+|++||+++ ++++|+
T Consensus 63 ------~~DgDPlDvlvl~~~p~~pG~vi~~r~iGvl~m~Dege~D~KiiaV~~~dp~~~~i~di~Dl~~~---~l~~i~ 133 (174)
T 2prd_A 63 ------AEDGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDEKGGDAKVIGVVAEDQRLDHIQDIGDVPEG---VKQEIQ 133 (174)
T ss_dssp ------CTTSSCCEEEEECSSCCCTTCEEEEEEEEEEEEEESSCEEEEEEEEETTCGGGTTCCSGGGSCHH---HHHHHH
T ss_pred ------cCCCCceEEEEECCCCCCCceEEEEEEEEEEEEecCCCCccEEEEEECCCcchhhcCChHHCCHH---HHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999875 999999
Q ss_pred HHhhhccCCC---CCcccccCCCcchhhhhhhHHHHHHHHHH
Q psy300 325 EWFKIYKIPD---GKPENVLNTRVEGESSQGFIPGCRGRTEQ 363 (451)
Q Consensus 325 ~~F~~yk~~~---gk~~~~~~~~~~~~~~~~~i~~~~~~~~~ 363 (451)
|||++||.++ ||++++.+|.|+ ++|+++|++||++|++
T Consensus 134 ~fF~~YK~le~k~gK~v~~~gw~~~-~~A~~~I~~~~~~~~~ 174 (174)
T 2prd_A 134 HFFETYKALEAKKGKWVKVTGWRDR-KAALEEVRACIARYKG 174 (174)
T ss_dssp HHHHHTTGGGGGGTCCEEEEEEECH-HHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCccccCCCceEECcccCH-HHHHHHHHHHHHHHhC
Confidence 9999999999 999999999985 7789999999999974
No 4
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=100.00 E-value=1.4e-54 Score=399.03 Aligned_cols=175 Identities=30% Similarity=0.385 Sum_probs=160.6
Q ss_pred CCc-ccccccCCccccccccccceeeccCCC-CccccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccC
Q psy300 161 NGL-ISPFHDIPLYSNVKDKIFNMVVEIPRW-TNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTW 238 (451)
Q Consensus 161 ~G~-iSp~hdiPl~v~~~p~~vn~vvEIPrg-S~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~ 238 (451)
.|. +++||++|++.+ .|..++++||||++ |++|||+++ ++|.++.+|.++.++.||+|||||||||
T Consensus 17 ~g~~im~~~~ip~g~~-~p~~vnvvIEIP~g~s~~KyE~dk-----------~~g~i~~DR~l~~~~~YP~NYGfIP~Tl 84 (197)
T 3fq3_A 17 QGPGSMNIDAISIGSN-PPEDVNVIIEVPVGGQPIKYEMDK-----------KAGALIVDRFLYTPMTYPGNYGFVPHTL 84 (197)
T ss_dssp -----CCGGGSCSCSS-TTSCEEEEEEECTTCCSEEEEEET-----------TTTEEEEEEECCSSBCCSSEEEECTTCC
T ss_pred CCCCcCCHHHCCCCCC-CCCEEEEEEEecCCCCCEeEEEec-----------CCCCEEEEeecCCCCcCCcccccccCcc
Confidence 566 899999999864 68999999999985 999999986 5688888888999999999999999999
Q ss_pred CCCCCCCcCCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecC--CccccCCCCcccccccC
Q psy300 239 ENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHF 316 (451)
Q Consensus 239 ~~p~~~~~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~--d~~~~~i~~~~d~~~~~ 316 (451)
+|||||||||||++.++.||++++|||||+|+|+|+||.|||||||+++ ||+|++|+|++||++
T Consensus 85 ------------~~DgDPLDvlvl~~~p~~pG~vi~~r~iGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~-- 150 (197)
T 3fq3_A 85 ------------SEDGDPIDVLVCNTRPLIPGCVINVRPIGVLVMEDNSGKDEKIIAVPSPHLTRRYEKIHDYTDMPE-- 150 (197)
T ss_dssp ------------CTTSSCCEEEECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCSTTTTCCSGGGSCH--
T ss_pred ------------cCCCCceEEEEEcCCCCCCceEEEEEEEEEEEEecCCCCccEEEEEECCCCCchhcccCchHHCCH--
Confidence 7999999999999999999999999999999999999999999999999 999999999999975
Q ss_pred cchHHHHHHHhhhccCCC-CCcccccCCCcchhhhhhhHHHHHHHHHH
Q psy300 317 PGYLKATNEWFKIYKIPD-GKPENVLNTRVEGESSQGFIPGCRGRTEQ 363 (451)
Q Consensus 317 p~~~~~i~~~F~~yk~~~-gk~~~~~~~~~~~~~~~~~i~~~~~~~~~ 363 (451)
+++++|+|||++||.++ ||++.+.+|.|+ +.|+++|++|+++|++
T Consensus 151 -~~l~~I~~fF~~YK~le~~K~v~v~~~~~~-~~A~~~I~~~~~~~~~ 196 (197)
T 3fq3_A 151 -ITLKQIAHFFEHYKDLEPGKWVKIGDWGDE-DYARKFIVEAIERAKG 196 (197)
T ss_dssp -HHHHHHHHHHHHTTTTSTTCCEEECCCBCH-HHHHHHHHHHHHHHC-
T ss_pred -HHHHHHHHHHHHhcCcCCCCeEEeCCCCCH-HHHHHHHHHHHHHHhh
Confidence 59999999999999998 899999999995 7789999999999975
No 5
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Probab=100.00 E-value=1.2e-54 Score=399.06 Aligned_cols=175 Identities=27% Similarity=0.390 Sum_probs=160.6
Q ss_pred CCc-ccccccCCccccccccccceeeccCCCCc-cccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccC
Q psy300 161 NGL-ISPFHDIPLYSNVKDKIFNMVVEIPRWTN-AKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTW 238 (451)
Q Consensus 161 ~G~-iSp~hdiPl~v~~~p~~vn~vvEIPrgS~-~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~ 238 (451)
.|. +++||++|++. ..|..++++||||+||+ +|||+++ ++|.++.+|.++.++.||+|||||||||
T Consensus 17 ~g~~~m~~~~i~~g~-~~p~~vnvvIEIP~gs~~~KyE~dk-----------~~g~i~~DR~l~s~~~YP~NYGfIP~Tl 84 (196)
T 3gvf_A 17 QGPGSMSFSNVPAGK-DLPQDFNVIIEIPAQSEPVKYEADK-----------ALGLLVVDRFIGTGMRYPVNYGFIPQTL 84 (196)
T ss_dssp ------CGGGSCSCS-BTTTBEEEEEEECTTCCSEEEEEET-----------TTTEEEEEEECTTCCCCSSEEEECTTCC
T ss_pred cCCCCCchhhCCCCC-CCCCEEEEEEEecCCCCceEEEEec-----------CCCCEEEEeEcCCCccCCcccccccCcc
Confidence 566 88999999975 45899999999999998 9999986 5688888899999999999999999999
Q ss_pred CCCCCCCcCCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecCC--ccccCCCCcccccccC
Q psy300 239 ENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVND--PNAAKLNDVADIETHF 316 (451)
Q Consensus 239 ~~p~~~~~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~d--~~~~~i~~~~d~~~~~ 316 (451)
+|||||||||||++.++.||++++|||||+|+|+|+||.|||||||+++| |+|++|+|++||++
T Consensus 85 ------------~~DgDPLDvlvl~~~p~~pG~vi~~r~iGvl~M~Dege~D~KIIaVp~~d~~p~~~~i~di~dlp~-- 150 (196)
T 3gvf_A 85 ------------SGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPA-- 150 (196)
T ss_dssp ------------CTTSSCCEEEECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCH--
T ss_pred ------------CCCCCceEEEEecCCccCCeeEEEEEEEEEEEEecCCCcccEEEEEecCCcCchhhhcCchhhCCH--
Confidence 79999999999999999999999999999999999999999999999998 99999999999975
Q ss_pred cchHHHHHHHhhhccCCC-CCcccccCCCcchhhhhhhHHHHHHHHHH
Q psy300 317 PGYLKATNEWFKIYKIPD-GKPENVLNTRVEGESSQGFIPGCRGRTEQ 363 (451)
Q Consensus 317 p~~~~~i~~~F~~yk~~~-gk~~~~~~~~~~~~~~~~~i~~~~~~~~~ 363 (451)
+++++|+|||++||.++ ||++.+.+|.|+ ++|+++|++|+++|++
T Consensus 151 -~~l~~I~~fF~~YK~le~gK~v~v~gw~~~-~~A~~~I~~~~~~y~~ 196 (196)
T 3gvf_A 151 -YLKDQIKHFFEQYKALEKGKWVKVEGWDGI-DAAHKEITDGVANFKK 196 (196)
T ss_dssp -HHHHHHHHHHHHTTTTSTTCCEEEEEEECH-HHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHHHHhcCcCCCCeEEeccCcCH-HHHHHHHHHHHHHHhC
Confidence 59999999999999999 999999999985 7889999999999974
No 6
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=100.00 E-value=1.9e-54 Score=392.99 Aligned_cols=170 Identities=25% Similarity=0.329 Sum_probs=159.8
Q ss_pred ccccCCccccccccccceeeccCCCCc-cccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCCC
Q psy300 166 PFHDIPLYSNVKDKIFNMVVEIPRWTN-AKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDET 244 (451)
Q Consensus 166 p~hdiPl~v~~~p~~vn~vvEIPrgS~-~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~~ 244 (451)
+||++|++.+ .+..++++||||+||+ +|||+++ ++|.++.+|.+|+++.||+|||||||||
T Consensus 1 ~~~~ip~~~~-~p~~~nvvIEIP~gs~p~KyE~dk-----------~~g~i~~DR~l~~~~~YP~NYGfIP~Tl------ 62 (175)
T 2au7_A 1 SLLNVPAGKD-LPEDIYVVIEIPANADPIKYEIDK-----------ESGALFVDQFMSTAMFYPCNYGYINHTL------ 62 (175)
T ss_dssp CGGGCCSCSB-TTTBEEEEEEECTTCCSEEEEECT-----------TTCCEEEEEECSSSCCCSSEEEECTTCC------
T ss_pred CcccCCCCCC-CCCEEEEEEEecCCCCceeEEEec-----------CCCCEEEeeecCCCCcCCcCcCccCCcc------
Confidence 4899999864 4789999999999999 9999987 4577777788999999999999999999
Q ss_pred CcCCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecC--CccccCCCCcccccccCcchHHH
Q psy300 245 DAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKA 322 (451)
Q Consensus 245 ~~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~--d~~~~~i~~~~d~~~~~p~~~~~ 322 (451)
+|||||||||||++.++.||++++||+||+|+|+|+||.|||||||+++ ||+|++|+|++||+++ ++++
T Consensus 63 ------~~DgDPlDvlvl~~~p~~pG~vi~~r~iGvl~m~Deg~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~---~l~~ 133 (175)
T 2au7_A 63 ------SLDGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTDEAGEDAKLVAVPHSKLSKEYDHIKDVNDLPEL---LKAQ 133 (175)
T ss_dssp ------CTTSSCCEEEECCSSCCCTTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCSTTTTCCSGGGSCHH---HHHH
T ss_pred ------CCCCCceEEEEECCCCCCCceEEEEEEEEEEEeecCCCCccEEEEEeCCCCCcchhhCCChHHCCHH---HHHH
Confidence 6999999999999999999999999999999999999999999999999 9999999999999876 9999
Q ss_pred HHHHhhhccCCC-CCcccccCCCcchhhhhhhHHHHHHHHHH
Q psy300 323 TNEWFKIYKIPD-GKPENVLNTRVEGESSQGFIPGCRGRTEQ 363 (451)
Q Consensus 323 i~~~F~~yk~~~-gk~~~~~~~~~~~~~~~~~i~~~~~~~~~ 363 (451)
|+|||++||.++ ||++++++|.|+ ++|+++|++||++|++
T Consensus 134 i~~fF~~YK~le~gK~v~v~gw~~~-~~A~~~I~~~~~~~~~ 174 (175)
T 2au7_A 134 IAHFFEHYKDLEKGKWVKVEGWENA-EAAKAEIVASFERAKN 174 (175)
T ss_dssp HHHHHHHTTTTSTTCCEEEEEEECH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCccCCCCeEEccccCH-HHHHHHHHHHHHHHHh
Confidence 999999999999 999999999985 7789999999999986
No 7
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Probab=100.00 E-value=2.4e-54 Score=397.97 Aligned_cols=176 Identities=27% Similarity=0.364 Sum_probs=157.9
Q ss_pred CCCc-ccccccCCccccccccccceeeccCCCC-ccccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCcc
Q psy300 160 ENGL-ISPFHDIPLYSNVKDKIFNMVVEIPRWT-NAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQT 237 (451)
Q Consensus 160 ~~G~-iSp~hdiPl~v~~~p~~vn~vvEIPrgS-~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T 237 (451)
.+|+ +++||++|++.+ .|..++++||||+|| ++|||+++ ++|.++++|.+++++.|||||||||||
T Consensus 16 ~~g~~~m~~~~i~~g~~-~p~~vnvvIEIP~gs~~~KyE~dk-----------~~G~l~~DR~l~~~~~YP~NYGfIP~T 83 (199)
T 3ld3_A 16 TQGPGSMNLDDIGSGSN-APEEVNVVIEVSQDSHPVKYEFDE-----------KNGALWVDRFLPTAMYYPCNYGFIPNT 83 (199)
T ss_dssp ----------CCCSCTT-TTTSEEEEEEECTTCCSEEEEECT-----------TTCCEEEEEECSSSBCCSSEEEECTTC
T ss_pred cCCCccCChHHCCCCCC-CCCEEEEEEEecCCCCCEEEEEec-----------CCCCEEEEEEcCCCCcCCccccccccc
Confidence 3666 899999999854 689999999999998 59999986 579999999999999999999999999
Q ss_pred CCCCCCCCcCCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecC--CccccCCCCccccccc
Q psy300 238 WENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETH 315 (451)
Q Consensus 238 ~~~p~~~~~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~--d~~~~~i~~~~d~~~~ 315 (451)
| +|||||||||||++.++.||++++|||||+|+|+|+||+|||||||+++ ||+|++|+|++||++
T Consensus 84 l------------~~DGDPLDvlvl~~~p~~pG~vi~vr~IGvl~MiDege~D~KIIaVp~~~~dp~~~~i~di~Dlp~- 150 (199)
T 3ld3_A 84 I------------AGDGDPVDVLVLARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVNYSDLPS- 150 (199)
T ss_dssp C------------CTTSSCCEEEECCSSCCCTTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCH-
T ss_pred c------------cCCCCceEEEEecCCCCCCceEEEEEEEEEEEEecCCCCcceEEEEECCCCCccccccCchHHCCH-
Confidence 9 7999999999999999999999999999999999999999999999999 999999999999975
Q ss_pred CcchHHHHHHHhhhccCCC-CCcccccCCCcchhhhhhhHHHHHHHHHH
Q psy300 316 FPGYLKATNEWFKIYKIPD-GKPENVLNTRVEGESSQGFIPGCRGRTEQ 363 (451)
Q Consensus 316 ~p~~~~~i~~~F~~yk~~~-gk~~~~~~~~~~~~~~~~~i~~~~~~~~~ 363 (451)
+++++|+|||++||.++ ||++.+.+|.|+ ++|+++|++|+++|++
T Consensus 151 --~~l~~I~~fF~~YK~le~gK~v~v~gw~~~-~~A~~~I~~~~~~~~~ 196 (199)
T 3ld3_A 151 --SFLDSISHFFSFYKKLEKDKFVSVGCWQDA-ASAKELIRSAIIAAKK 196 (199)
T ss_dssp --HHHHHHHHHHHHTTTTSTTCCEEEEEEEEH-HHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHHhcCcCCCceEEecCCCCH-HHHHHHHHHHHHHHHh
Confidence 59999999999999998 799999999985 7889999999999986
No 8
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=100.00 E-value=2.5e-54 Score=392.38 Aligned_cols=169 Identities=25% Similarity=0.438 Sum_probs=156.6
Q ss_pred ccccCCccccccccccceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCCCC
Q psy300 166 PFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETD 245 (451)
Q Consensus 166 p~hdiPl~v~~~p~~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~~~ 245 (451)
+||++|++.+ +..+|++||||+||++|||+++ ++|.+++++.+|+++.||+|||||||||
T Consensus 2 ~~~~ip~~~~--p~~~nvvIEIP~gs~~KyE~dk-----------~~g~i~~DR~l~~~~~YP~NYGfIP~Tl------- 61 (173)
T 2bqx_A 2 NLEKLEVSHD--ADSLCVVIEISKHSNIKYELDK-----------ESGALMVDRVLYGAQNYPANYGFVPNTL------- 61 (173)
T ss_dssp -----CCCEE--TTEEEEEEEECTTCSEEEEECT-----------TTCCEEEEEECSSSCCCSSEEEECSSCC-------
T ss_pred CcccCCCCCC--CCeEEEEEEECCCCCeEEEEec-----------CCCCEEEeeecCCCCcCccccccccccc-------
Confidence 6999999875 8899999999999999999986 5799999999999999999999999999
Q ss_pred cCCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecC--CccccCCCCcccccccCcchHHHH
Q psy300 246 AHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKAT 323 (451)
Q Consensus 246 ~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~--d~~~~~i~~~~d~~~~~p~~~~~i 323 (451)
+|||||||||||++.++.||++++|||||+|+|+|+||+|||||||+++ ||+|++|++++||+++ ++++|
T Consensus 62 -----~~DgDPlDvlvl~~~p~~~G~vi~~r~iGvl~m~D~g~~D~KiiaV~~~k~dp~~~~i~di~Dl~~~---~l~~i 133 (173)
T 2bqx_A 62 -----GSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLIALPIDKIDPTHSYVKDIDDLSKH---TLDKI 133 (173)
T ss_dssp -----CTTSSCCEEEECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCCTTTTCCSGGGSCHH---HHHHH
T ss_pred -----CCCCCceEEEEECCCCCCCceEEEEEEEEEEEeccCCCCccEEEEEeCCCCCcchhhcCChhHCCHH---HHHHH
Confidence 7999999999999999999999999999999999999999999999999 9999999999999876 99999
Q ss_pred HHHhhhccCCC-CCcccccCCCcchhhhhhhHHHHHHHHHH
Q psy300 324 NEWFKIYKIPD-GKPENVLNTRVEGESSQGFIPGCRGRTEQ 363 (451)
Q Consensus 324 ~~~F~~yk~~~-gk~~~~~~~~~~~~~~~~~i~~~~~~~~~ 363 (451)
+|||++||.++ ||++++.+|.|+ ++|+++|++||++|++
T Consensus 134 ~~fF~~YK~le~gK~v~~~g~~~~-~~A~~~I~~~~~~~~~ 173 (173)
T 2bqx_A 134 KHFFETYKDLEPNKWVKVKGFENK-ESAIKVLEKAIKAYQG 173 (173)
T ss_dssp HHHHHHTTTTSTTCCEEEEEEEEH-HHHHHHHHHHHHHHC-
T ss_pred HHHHHHhccccCCCceeeCcCcCH-HHHHHHHHHHHHHHhC
Confidence 99999999999 999999999985 7789999999999974
No 9
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=100.00 E-value=7.6e-54 Score=388.44 Aligned_cols=166 Identities=28% Similarity=0.386 Sum_probs=158.7
Q ss_pred ccccCCccccccccccceeeccCCCCc-cccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCCC
Q psy300 166 PFHDIPLYSNVKDKIFNMVVEIPRWTN-AKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDET 244 (451)
Q Consensus 166 p~hdiPl~v~~~p~~vn~vvEIPrgS~-~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~~ 244 (451)
+||++|++.+ +..++++||||+||+ +|||+++ ++|.+++++.+|+++.||+|||||||||
T Consensus 3 ~~~~ip~~~~--p~~~nvvIEIP~gs~p~KyE~dk-----------~~g~i~~DR~l~~~~~YP~NYGfIP~Tl------ 63 (173)
T 3d53_A 3 FIKKIKAKAN--NNEINVIIEIPMNSGPIKYEFDK-----------ESGALFVDRFMQTTMSYPCNYGFIPDTL------ 63 (173)
T ss_dssp CGGGSCSCSS--TTCEEEEEEECTTCCSEEEEECT-----------TTCCEEEEEECCSSCCCSSEEEECTTCC------
T ss_pred chhhCCCCCC--CCeEEEEEEeCCCCCceeEEEec-----------CCCCEEEeeecCCCCcCCcccchhhCCc------
Confidence 6999999875 889999999999999 9999986 5789999999999999999999999999
Q ss_pred CcCCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecC--CccccCCCCcccccccCcchHHH
Q psy300 245 DAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKA 322 (451)
Q Consensus 245 ~~~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~--d~~~~~i~~~~d~~~~~p~~~~~ 322 (451)
+|||||||||||++.++.||++++||+||+|+|+|+||+|||||||+++ ||+|++|++++||+++ ++++
T Consensus 64 ------~~DgDPlDvlvl~~~p~~~G~vi~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~---~l~~ 134 (173)
T 3d53_A 64 ------SNDGDPVDVLVVAHHPVVPGSVIKCRAIGVLMMEDESGLDEKIIAVPTSKLDITFDHIKELDDLCEM---LKKR 134 (173)
T ss_dssp ------CTTSSCCEEEECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHH---HHHH
T ss_pred ------cCCCCceEEEEECCCccCCceEEEEEEEEEEEEccCCCccceEEEEeCCCCCcchhhcCChhHCCHH---HHHH
Confidence 6999999999999999999999999999999999999999999999999 9999999999999875 9999
Q ss_pred HHHHhhhccCCC-CCcccccCCCcchhhhhhhHHHHHHH
Q psy300 323 TNEWFKIYKIPD-GKPENVLNTRVEGESSQGFIPGCRGR 360 (451)
Q Consensus 323 i~~~F~~yk~~~-gk~~~~~~~~~~~~~~~~~i~~~~~~ 360 (451)
|+|||++||.++ ||++++.+|.|+ ++|+++|++||+|
T Consensus 135 i~~fF~~YK~le~gK~v~v~gw~~~-~~A~~~I~~~~~~ 172 (173)
T 3d53_A 135 IVHFFEHYKDLEKGKWVKVTGWGDK-VKAETLIKEGIDR 172 (173)
T ss_dssp HHHHHHHTTTTSTTCCEEEEEEECH-HHHHHHHHHHHHC
T ss_pred HHHHHHHHcCccCCCcEEEccCcCH-HHHHHHHHHHHhc
Confidence 999999999999 999999999985 7789999999985
No 10
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=100.00 E-value=1.4e-53 Score=385.51 Aligned_cols=158 Identities=23% Similarity=0.399 Sum_probs=150.8
Q ss_pred cccceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCCCCcCCCCCCCCCcce
Q psy300 179 KIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPID 258 (451)
Q Consensus 179 ~~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~~~~~~~~~~D~DPlD 258 (451)
-.++++||||+||++|||+|+ ++|+++++|.+|+++.||+||||||||| +|||||||
T Consensus 11 ~~~nvvIEIP~gs~~KyE~Dk-----------~~G~l~~DR~l~~~~~YP~NYGfIP~Tl------------~~DGDPlD 67 (172)
T 1sxv_A 11 MQFDVTIEIPKGQRNKYEVDH-----------ETGRVRLDRYLYTPMAYPTDYGFIEDTL------------GDDGDPLD 67 (172)
T ss_dssp CCEEEEEEECTTCCEEC-CCT-----------TTCCCCCCEECSSSCCCSSEEEEETTCC------------CTTSSCCE
T ss_pred eEEEEEEEECCCCCeEEEEEc-----------CCCCEEEEeecCCCCCCCcCcCccCCcc------------CCCCCCeE
Confidence 458999999999999999975 6899999999999999999999999999 69999999
Q ss_pred EEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecCCccccCCCCcccccccCcchHHHHHHHhhhccCCC-CCc
Q psy300 259 VLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD-GKP 337 (451)
Q Consensus 259 ~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~d~~~~~i~~~~d~~~~~p~~~~~i~~~F~~yk~~~-gk~ 337 (451)
||||++.++.||++++|||||+|+|+|+||.|||||||+++||+|++|+|++||+++ ++++|+|||++||.++ ||+
T Consensus 68 vlvl~~~p~~pG~vi~~r~iGvl~m~Dege~D~KIIaVp~~Dp~~~~i~di~Dlp~~---~l~~I~~fF~~YK~le~gK~ 144 (172)
T 1sxv_A 68 ALVLLPQPVFPGVLVAARPVGMFRMVDEHGGDDKVLCVPAGDPRWDHVQDIGDVPAF---ELDAIKHFFVHYKDLEPGKF 144 (172)
T ss_dssp EEECCSSCCCTTCEEEEEEEEEEEEEETTEECCEEEEEETTCGGGTTCCSGGGSCHH---HHHHHHHHHHHTTTTSTTCC
T ss_pred EEEEcCCCcCCceEEEEEEEEEEEecCCCCCCCEEEEEeCCCCCccccCChHHCCHH---HHHHHHHHHHHhcCcCCCCe
Confidence 999999999999999999999999999999999999999999999999999999986 9999999999999999 999
Q ss_pred ccccCCCcchhhhhhhHHHHHHHHHH
Q psy300 338 ENVLNTRVEGESSQGFIPGCRGRTEQ 363 (451)
Q Consensus 338 ~~~~~~~~~~~~~~~~i~~~~~~~~~ 363 (451)
+.+.+|.|+ ++|+++|++|+++|++
T Consensus 145 v~v~gw~~~-~~A~~~I~~~~~~~~~ 169 (172)
T 1sxv_A 145 VKAADWVDR-AEAEAEVQRSVERFKA 169 (172)
T ss_dssp EEEEEEECH-HHHHHHHHHHHHHHHC
T ss_pred EEeCCCCCH-HHHHHHHHHHHHHHHH
Confidence 999999986 7779999999999987
No 11
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=100.00 E-value=2.2e-53 Score=387.12 Aligned_cols=167 Identities=26% Similarity=0.351 Sum_probs=154.7
Q ss_pred ccCCccccccccccceeeccCCCCc-cccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCCCCc
Q psy300 168 HDIPLYSNVKDKIFNMVVEIPRWTN-AKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDA 246 (451)
Q Consensus 168 hdiPl~v~~~p~~vn~vvEIPrgS~-~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~~~~ 246 (451)
|++|++.+. ..++++||||+||+ +|||+++ ++|.++.+|.++.++.||+|||||||||
T Consensus 6 h~ip~g~~~--~~vnvvIEIP~gs~~~KyE~dk-----------~~g~i~~DR~l~~~~~YP~NYGfIP~Tl-------- 64 (178)
T 3tr4_A 6 FLVSAGKGI--DDFNVIIEIPANGGEVKYEYDK-----------ELGFLTVDRFMPTSMRYPCNYGFVPSTL-------- 64 (178)
T ss_dssp --CCCEEET--TEEEEEEEECTTCCSEEEEEET-----------TTTEEEEEEECCSSBCCSSEEEECTTCC--------
T ss_pred ccCCCCCCC--CEEEEEEEecCCCCcEEEEEec-----------CCCcEEEEEecCcCccCCccccccCCcc--------
Confidence 889998643 89999999999999 9999986 4688888888888999999999999999
Q ss_pred CCCCCCCCCcceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecC--CccccCCCCcccccccCcchHHHHH
Q psy300 247 HTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKATN 324 (451)
Q Consensus 247 ~~~~~~D~DPlD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~--d~~~~~i~~~~d~~~~~p~~~~~i~ 324 (451)
+|||||||||||++.++.||++++|||||+|+|+|+||+|||||||+++ ||+|++|+|++||++ +++++|+
T Consensus 65 ----~~DgDPlDvlvl~~~p~~pG~vi~~r~iGvl~m~Dege~D~KiIaVp~~~~dp~~~~i~di~dl~~---~~l~~i~ 137 (178)
T 3tr4_A 65 ----AQDGDPLDVLVLTPVPVQPGVLMRVRALGIMKMEDEAGEDSKVLAVPVVKACRAYEAIQSLKDISS---LLLDAIS 137 (178)
T ss_dssp ----CTTSSCCEEEECCSSCCCTTCEEEEEEEEEEEEEETTEECCEEEEEECTTTCGGGTTCCSGGGSCH---HHHHHHH
T ss_pred ----cCCCCceEEEEECCCCCCCeeEEEEEEEEEEEeccCCCCcceEEEEEcCCCCchhhhcCchhhCCH---HHHHHHH
Confidence 7999999999999999999999999999999999999999999999999 899999999999975 5999999
Q ss_pred HHhhhccCCC-CCcccccCCCcchhhhhhhHHHHHHHHHH
Q psy300 325 EWFKIYKIPD-GKPENVLNTRVEGESSQGFIPGCRGRTEQ 363 (451)
Q Consensus 325 ~~F~~yk~~~-gk~~~~~~~~~~~~~~~~~i~~~~~~~~~ 363 (451)
|||++||.++ ||++++.+|.|+ +.|+++|++||++|++
T Consensus 138 ~fF~~YK~le~gK~v~~~g~~~~-~~A~~~I~~~~~~~~~ 176 (178)
T 3tr4_A 138 HFFERYKDLEPNKWAKVKGWEDK-EAAKKEFEASIVRFKE 176 (178)
T ss_dssp HHHHHTTTTSTTCCEEEEEEECH-HHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCcCCCceeEeccCcCH-HHHHHHHHHHHHHHHh
Confidence 9999999998 699999999985 7889999999999986
No 12
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=100.00 E-value=3e-53 Score=384.94 Aligned_cols=160 Identities=28% Similarity=0.450 Sum_probs=152.5
Q ss_pred cccccceeeccCCCCccccccccCCCCCCCcccccCCeeeeecccCCCCCCccccCCCCccCCCCCCCCcCCCCCCCCCc
Q psy300 177 KDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDP 256 (451)
Q Consensus 177 ~p~~vn~vvEIPrgS~~K~E~~k~~~~npI~qD~~~g~~r~~~~l~p~~~yp~nYG~iP~T~~~p~~~~~~~~~~~D~DP 256 (451)
.|..+|++||||+||++|||+++ ++|.+++++.+|+++.||+||||||||| +|||||
T Consensus 9 ~p~~~nvvIEIP~gs~~KyE~dk-----------~~g~l~~DR~l~~~~~YP~NYGfIP~Tl------------~~DgDP 65 (173)
T 1qez_A 9 APDVVNVLVEIPQGSNIKYEYDD-----------EEGVIKVDRVLYTSMNYPFNYGFIPGTL------------EEDGDP 65 (173)
T ss_dssp TTTSEEEEEEECTTCCEEEEEET-----------TTTEEEEEEECSSSBCCSSEEEECTTCC------------CTTSSC
T ss_pred CCCeEEEEEEECCCCCeEEEEec-----------CCCCEEEEeecCCCCcCCcccccccccc------------CCCCCc
Confidence 45789999999999999999986 5799999999999999999999999999 699999
Q ss_pred ceEEEeccccCCCccEEEEEEeeeeeeecCCCccceEEEEecC--CccccCCCCcccccccCcchHHHHHHHhhhccCCC
Q psy300 257 IDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVN--DPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD 334 (451)
Q Consensus 257 lD~~~~~~~~~~~G~v~~vr~lG~l~~~d~~e~D~Kii~v~~~--d~~~~~i~~~~d~~~~~p~~~~~i~~~F~~yk~~~ 334 (451)
||||||++.++.||++++|||||+|+|+|+||+|||||||+++ ||+|++|+|++||+++ ++++|+|||++||.++
T Consensus 66 lDvlvl~~~p~~~G~vi~~r~iGvl~m~Dege~D~KiiaV~~~k~dp~~~~i~di~Dl~~~---~l~~i~~fF~~YK~le 142 (173)
T 1qez_A 66 LDVLVITNYQLYPGSVIEVRPIGILYMKDEEGEDAKIVAVPKDKTDPSFSNIKDINDLPQA---TKNKIVHFFEHYKELE 142 (173)
T ss_dssp CEEEECCSSCCCTTCEEEEEEEEEEEEEETTEEEEEEEEEECTTTCGGGTTCCSGGGSCHH---HHHHHHHHHHHTTTTS
T ss_pred eEEEEECCCCCCCccEEEEEEEEEEEeecCCCcccEEEEEeCCCCCcchhhcCChHHCCHH---HHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999999 9999999999999875 9999999999999999
Q ss_pred -CCcccccCCCcchhhhhhhHHHHHHHHHH
Q psy300 335 -GKPENVLNTRVEGESSQGFIPGCRGRTEQ 363 (451)
Q Consensus 335 -gk~~~~~~~~~~~~~~~~~i~~~~~~~~~ 363 (451)
||++++.+|.|+ ++|+++|++||++|++
T Consensus 143 ~gK~v~~~gw~~~-~~A~~~I~~~~~~~~~ 171 (173)
T 1qez_A 143 PGKYVKISGWGSA-TEAKNRIQLAIKRVSG 171 (173)
T ss_dssp TTCCEEEEEEECH-HHHHHHHHHHHHHHC-
T ss_pred CCCceEEccccCH-HHHHHHHHHHHHHHHh
Confidence 999999999985 7789999999999987
No 13
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.92 E-value=9.8e-25 Score=196.67 Aligned_cols=127 Identities=24% Similarity=0.517 Sum_probs=117.7
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CC--CceeEEEEEEccHHHHHHHHHhcCCccCCC-------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DG--KLKGCGFINYANKISAVKAILKSNKKPYKG------- 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg--~skG~aFV~F~~~~~A~~Al~~lng~~f~G------- 100 (451)
+.++|||+|||.++++++|+++|++||+|.+++++++. +| +++|||||+|.+.++|.+|+..+++..+.+
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 57899999999999999999999999999999999998 44 899999999999999999999999876542
Q ss_pred ------------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ------------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ------------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.|.++.++++++|.++|||||+|.+.++|.+|+..+|++.+
T Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 3nmr_A 82 MKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQT 161 (175)
T ss_dssp EEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCC
T ss_pred EccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcc
Confidence 37999999999999999999999998899999999999999999999999998765
Q ss_pred c
Q psy300 157 K 157 (451)
Q Consensus 157 ~ 157 (451)
.
T Consensus 162 ~ 162 (175)
T 3nmr_A 162 M 162 (175)
T ss_dssp C
T ss_pred c
Confidence 3
No 14
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.92 E-value=5e-25 Score=207.48 Aligned_cols=127 Identities=22% Similarity=0.409 Sum_probs=116.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC-------
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG------- 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------- 100 (451)
..++++|||+|||.++++++|+++|++||+|.+|++++++ +|+++|||||+|.+.++|.+|+..+++..+.|
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 3467899999999999999999999999999999999998 89999999999999999999999999877665
Q ss_pred ----------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ----------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ----------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.|.++.++++. +.++|||||+|.+.++|.+|+..||+..+
T Consensus 92 ~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~ 168 (213)
T 4f02_A 92 SQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLL 168 (213)
T ss_dssp CCCCTHHHHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred ccccccccccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 37999999999999999999999985 44799999999999999999999998764
No 15
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.92 E-value=2.9e-24 Score=191.84 Aligned_cols=126 Identities=33% Similarity=0.590 Sum_probs=118.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC---------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG--------- 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G--------- 100 (451)
+.++|||+|||.++++++|+++|++||+|.++++++++ +|+++|||||+|.+.++|.+|+..++|..+.|
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 36899999999999999999999999999999999998 99999999999999999999999999877765
Q ss_pred ------------------CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ------------------KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ------------------~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.++ +|.++|||||+|.+.++|.+|+..+|++.+
T Consensus 81 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 155 (167)
T 1fxl_A 81 PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP 155 (167)
T ss_dssp CCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc
Confidence 37999999999999999999999874 788999999999999999999999998765
No 16
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.91 E-value=2.8e-24 Score=192.64 Aligned_cols=126 Identities=24% Similarity=0.489 Sum_probs=118.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC---------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG--------- 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G--------- 100 (451)
+.++|||+|||.++++++|+++|++||+|.++++++++ +|+++|||||+|.+.++|.+|+..++|..+.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 57899999999999999999999999999999999987 89999999999999999999999999877765
Q ss_pred ------------------CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ------------------KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ------------------~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++++. +|.++|||||+|.+.++|.+|+..+|++.+
T Consensus 82 ~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 82 PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp CCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 37999999999999999999999985 889999999999999999999999998765
No 17
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.1e-24 Score=190.68 Aligned_cols=124 Identities=20% Similarity=0.377 Sum_probs=116.0
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC------------
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG------------ 100 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------------ 100 (451)
++|||+|||.++++++|+++|++||+|.+++++++++|+++|||||+|.+.++|.+|+..++|..+.|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 58999999999999999999999999999999999989999999999999999999999999887765
Q ss_pred -----------------CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 -----------------KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 -----------------~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ .+|.++|||||+|.+.++|.+|+..+|++.+
T Consensus 81 ~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 154 (166)
T 3md3_A 81 QSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 154 (166)
T ss_dssp CCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 3799999999999999999999988 6789999999999999999999999998765
No 18
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.90 E-value=2.5e-23 Score=191.28 Aligned_cols=126 Identities=25% Similarity=0.533 Sum_probs=113.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC------
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG------ 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------ 100 (451)
+....++|||+|||.++++++|+++|++||.|.++++++++ +|.++|||||+|.+.++|.+|+.. ++..+.|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 44578899999999999999999999999999999999997 899999999999999999999986 5444433
Q ss_pred ---------------------------CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcC
Q psy300 101 ---------------------------KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 101 ---------------------------~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
.+|+++|+++|++||.|.++.++.+ .+|.++|||||+|.+.++|.+|+.. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~ 166 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K 166 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C
Confidence 3799999999999999999999998 4789999999999999999999986 4
Q ss_pred CCc
Q psy300 153 KKP 155 (451)
Q Consensus 153 ~ri 155 (451)
+..
T Consensus 167 ~~~ 169 (196)
T 1l3k_A 167 YHT 169 (196)
T ss_dssp CCE
T ss_pred CcE
Confidence 543
No 19
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.90 E-value=9.9e-24 Score=189.11 Aligned_cols=125 Identities=28% Similarity=0.593 Sum_probs=112.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHh---cCCccCCC------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILK---SNKKPYKG------ 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~---lng~~f~G------ 100 (451)
+.++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+.. ++|+.+..
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~~~~~~g~~i~v~~~~~~ 81 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHILDGKVIDPKRAIPR 81 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHHSCCEETTEECCCEECCCH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHhcccccCCeEcccccccch
Confidence 56899999999999999999999999999999999997 899999999999999999999996 44443321
Q ss_pred ----------------CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ----------------KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ----------------~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ .+|.++|||||+|.+.++|.+|+. +++..+
T Consensus 82 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~ 153 (167)
T 2cjk_A 82 DEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDF 153 (167)
T ss_dssp HHHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECS
T ss_pred hhccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEe
Confidence 4899999999999999999999988 578999999999999999999997 666544
No 20
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.90 E-value=3e-23 Score=193.66 Aligned_cols=126 Identities=25% Similarity=0.450 Sum_probs=115.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC---------
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG--------- 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G--------- 100 (451)
..++|||+|||.++++++|+++|++||.|.+++++++. +|+++|||||+|.+.++|.+|+..+++..+.|
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 56899999999999999999999999999999999987 89999999999999999999999999877665
Q ss_pred -----------------------------CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHh
Q psy300 101 -----------------------------KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 150 (451)
Q Consensus 101 -----------------------------~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ 150 (451)
.+++++|+++|++||.|.++.++++ .+|+++|||||+|.+.++|.+|+..
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 3799999999999999999999998 5789999999999999999999999
Q ss_pred cCCCcc
Q psy300 151 SNKKPY 156 (451)
Q Consensus 151 ln~riy 156 (451)
+|++.+
T Consensus 187 l~g~~~ 192 (216)
T 2qfj_A 187 MNLFDL 192 (216)
T ss_dssp HTTCBC
T ss_pred ccCCEe
Confidence 998765
No 21
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.87 E-value=1.6e-21 Score=190.40 Aligned_cols=127 Identities=24% Similarity=0.321 Sum_probs=119.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC--------
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG-------- 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G-------- 100 (451)
...++|||+|||.++++++|+++|++||.|.+++++++. +|.++|||||+|.+.++|.+|+..++|..+.|
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 356899999999999999999999999999999999987 99999999999999999999999999877765
Q ss_pred ----------------------C-CcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ----------------------K-ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ----------------------~-~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
. +++++|+++|+.||.|.++.++++++|.++|||||+|.+.++|.+|+..+|++.+
T Consensus 173 ~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 251 (284)
T 3smz_A 173 DAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSL 251 (284)
T ss_dssp CGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCcc
Confidence 2 3899999999999999999999998999999999999999999999999998876
No 22
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.86 E-value=7.7e-22 Score=191.41 Aligned_cols=126 Identities=30% Similarity=0.495 Sum_probs=115.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC-------
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG------- 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------- 100 (451)
...+.++|||+|||.++|+++|+++|++||.|.++++.+ ++|||||+|.+.++|.+|+..++|..+.|
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 445778999999999999999999999999999999964 48999999999999999999999987766
Q ss_pred --------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccC
Q psy300 101 --------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158 (451)
Q Consensus 101 --------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~ 158 (451)
.+|+++|+++|++||.|.++.++.+.+|+++|||||+|.+.++|.+|+..+|+..++.
T Consensus 93 a~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 164 (261)
T 3sde_A 93 ATHGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLL 164 (261)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEES
T ss_pred cccCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEe
Confidence 3799999999999999999999999999999999999999999999999996655543
No 23
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.86 E-value=1.8e-21 Score=175.11 Aligned_cols=120 Identities=25% Similarity=0.442 Sum_probs=109.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQY----G-------DIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 99 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~----G-------~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~ 99 (451)
+.++|||+|||.++++++|+++|++| | .|.++++. +++|||||+|.+.++|.+|+ .++|..+.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~-----~~~g~afV~f~~~~~A~~A~-~~~~~~~~ 76 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN-----QDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE-----TTTTEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec-----CCCCEEEEEeCCHHHHHHHH-HhCCcEec
Confidence 57899999999999999999999999 6 77777764 45899999999999999999 89887766
Q ss_pred C---------------------------CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhc
Q psy300 100 G---------------------------KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKS 151 (451)
Q Consensus 100 G---------------------------~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~l 151 (451)
| .+++++|+++|++||.|.++.++++ .+|.++|||||+|.+.++|.+|+..+
T Consensus 77 g~~i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 77 GQSLKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp TEECEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred CceeeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 5 3799999999999999999999998 48999999999999999999999999
Q ss_pred CCCcc
Q psy300 152 NKKPY 156 (451)
Q Consensus 152 n~riy 156 (451)
|+..+
T Consensus 157 ~g~~~ 161 (172)
T 2g4b_A 157 NGMQL 161 (172)
T ss_dssp TTCEE
T ss_pred CCCEE
Confidence 98765
No 24
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.85 E-value=1.7e-21 Score=190.96 Aligned_cols=128 Identities=16% Similarity=0.171 Sum_probs=107.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC------
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG------ 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------ 100 (451)
....+.++|||+|||.++++++|+++|++||+|.+|+++++..+ ++|||||+|.+.++|.+|+. ++|..+.|
T Consensus 36 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~ 113 (292)
T 2ghp_A 36 TRNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK-NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVS 113 (292)
T ss_dssp ------CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS-SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC-CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEE
Confidence 34567899999999999999999999999999999999998755 58999999999999999994 88877766
Q ss_pred --------------CCcHHHHHHHhcccC-cceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 --------------KITEEEFKEHFGQYG-DIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 --------------~~tee~L~~~F~~fG-~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++|| .|.++.++++..|.++|||||+|.+.++|.+|+..+++..+
T Consensus 114 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 184 (292)
T 2ghp_A 114 HLTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKI 184 (292)
T ss_dssp ECCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred ECCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 479999999999999 99999999987788999999999999999999999988654
No 25
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.84 E-value=6.9e-21 Score=178.85 Aligned_cols=122 Identities=19% Similarity=0.298 Sum_probs=107.8
Q ss_pred CCCceEEEcCCC-CCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC--------
Q psy300 30 TKRGRLFIKNLP-FKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG-------- 100 (451)
Q Consensus 30 ~~~~~lfVgnLp-~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G-------- 100 (451)
.+.++|||+||| .++++++|+++|++||.|.+|+++++ ++|||||+|.+.++|.+|++.|||..+.|
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 367899999999 89999999999999999999999865 47999999999999999999887643221
Q ss_pred --------------------------------------------------------CCcHHHHHHHhcccCcc--eeeEE
Q psy300 101 --------------------------------------------------------KITEEEFKEHFGQYGDI--IDAQL 122 (451)
Q Consensus 101 --------------------------------------------------------~~tee~L~~~F~~fG~V--~~v~v 122 (451)
.+|+++|+++|++||.| .++++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 25899999999999999 88998
Q ss_pred eeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 123 LKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 123 ~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
+.+. +.++|||||+|.+.++|.+|+..||+..+
T Consensus 158 ~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~ 190 (205)
T 3tyt_A 158 FSGK-SERSSSGLLEWDSKSDALETLGFLNHYQM 190 (205)
T ss_dssp CSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred EcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCc
Confidence 8875 55679999999999999999999998765
No 26
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.84 E-value=2.7e-21 Score=188.79 Aligned_cols=121 Identities=26% Similarity=0.425 Sum_probs=111.7
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC---------
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG--------- 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G--------- 100 (451)
.++++|||+|||.++++++|+++|++|| |.++.+ ++++|||||+|.+.++|.+|+..++|..+.|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~ 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC
Confidence 3678999999999999999999999999 999988 5678999999999999999999999987766
Q ss_pred ------------CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ------------KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ------------~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ .+|.++|||||+|.+.++|.+|+..+++..+
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~ 162 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPL 162 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3799999999999999999999987 5789999999999999999999999988654
No 27
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.84 E-value=9.1e-21 Score=185.82 Aligned_cols=126 Identities=19% Similarity=0.295 Sum_probs=110.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC--------
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYG-DIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG-------- 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G-~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G-------- 100 (451)
...++|||+|||.++++++|+++|++|| .|.+++++++..|.++|||||+|.+.++|.+|+..++|..+.|
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4688999999999999999999999999 9999999998888999999999999999999999998876644
Q ss_pred --------------------------C-CcHHHHHHHhcccCcceeeEEeeCCC--CCccceEEEEecchHHHHHHHHhc
Q psy300 101 --------------------------K-ITEEEFKEHFGQYGDIIDAQLLKNAD--GKLKGCGFINYANKISAVKAILKS 151 (451)
Q Consensus 101 --------------------------~-~tee~L~~~F~~fG~V~~v~v~~d~~--g~srG~gFV~F~s~e~A~~Ai~~l 151 (451)
. +++++|+++|++||.|.++.++++.. |.++|||||+|.+.++|.+|+ .+
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 4 89999999999999999999999866 999999999999999999999 99
Q ss_pred CCCcc
Q psy300 152 NKKPY 156 (451)
Q Consensus 152 n~riy 156 (451)
|++.+
T Consensus 274 ~g~~~ 278 (292)
T 2ghp_A 274 NRSLL 278 (292)
T ss_dssp TTEEE
T ss_pred cCCEE
Confidence 98764
No 28
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.83 E-value=1.2e-21 Score=177.13 Aligned_cols=124 Identities=24% Similarity=0.305 Sum_probs=108.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC-------
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG------- 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------- 100 (451)
.....++|||+|||.++++++|+++|++||.+..+.+....+|+++|||||+|.+.++|.+|+ +++|..+.|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~ 87 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEK 87 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEec
Confidence 455789999999999999999999999999877633333348899999999999999999999 598877766
Q ss_pred ----------------------CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 ----------------------KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ----------------------~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..+|++.+
T Consensus 88 ~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 161 (175)
T 1fje_B 88 PKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 161 (175)
T ss_dssp CCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEE
T ss_pred CCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 37999999999999988766 56788999999999999999999999988664
No 29
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.82 E-value=3.9e-20 Score=170.18 Aligned_cols=120 Identities=24% Similarity=0.444 Sum_probs=106.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQY----G-------DIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 99 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~----G-------~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~ 99 (451)
..++|||+|||.++++++|+++|++| | .|.++.+ ++++|||||+|.+.++|.+|+ .+||..+.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----~~~~g~afV~F~~~~~A~~Al-~l~g~~~~ 76 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----NQDKNFAFLEFRSVDETTQAM-AFDGIIFQ 76 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----ETTTTEEEEEESCSHHHHHHG-GGTTEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----cCCCCEEEEEeCCHHHHHHHH-HhcCCEEc
Confidence 57899999999999999999999999 5 5666655 466999999999999999999 78876543
Q ss_pred C-----------------------------------------------CCcHHHHHHHhcccCcceeeEEeeCC-CCCcc
Q psy300 100 G-----------------------------------------------KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLK 131 (451)
Q Consensus 100 G-----------------------------------------------~~tee~L~~~F~~fG~V~~v~v~~d~-~g~sr 131 (451)
| .+++++|+++|++||.|.++.++.++ +|.++
T Consensus 77 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~ 156 (198)
T 2yh0_A 77 GQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSK 156 (198)
T ss_dssp TEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEE
T ss_pred CceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcc
Confidence 3 26999999999999999999999984 89999
Q ss_pred ceEEEEecchHHHHHHHHhcCCCcc
Q psy300 132 GCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 132 G~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
|||||+|.+.++|.+|+..+|+..+
T Consensus 157 g~afV~f~~~~~a~~A~~~l~g~~~ 181 (198)
T 2yh0_A 157 GYAFCEYVDINVTDQAIAGLNGMQL 181 (198)
T ss_dssp EEEEEEESSSSHHHHHHHHHTTCEE
T ss_pred eEEEEEECCHHHHHHHHHHcCCCEE
Confidence 9999999999999999999988664
No 30
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.82 E-value=1.2e-19 Score=176.88 Aligned_cols=124 Identities=23% Similarity=0.379 Sum_probs=110.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC--
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFK----EHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG-- 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~----~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G-- 100 (451)
.+..+.++|||+|||.++++++|+ ++|++||.|.+|++++ +|+++|||||+|.+.++|.+|+..+||..+.|
T Consensus 4 ~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 4 PETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 345678999999999999999976 8999999999999876 78899999999999999999998887754322
Q ss_pred --------------------------------------------------------------------------------
Q psy300 101 -------------------------------------------------------------------------------- 100 (451)
Q Consensus 101 -------------------------------------------------------------------------------- 100 (451)
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence
Q ss_pred --------------------------------------------------------CCcHHHHHHHhcccCcceeeEEee
Q psy300 101 --------------------------------------------------------KITEEEFKEHFGQYGDIIDAQLLK 124 (451)
Q Consensus 101 --------------------------------------------------------~~tee~L~~~F~~fG~V~~v~v~~ 124 (451)
.+++++|+++|++||.|.++.++.
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 258999999999999999999997
Q ss_pred CCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 125 NADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 125 d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++ +|||||+|.+.++|.+|+..+|++.+
T Consensus 242 ~~----~g~afV~f~~~~~A~~A~~~l~g~~~ 269 (282)
T 3pgw_A 242 GR----HDIAFVEFDNEVQAGAARDALQGFKI 269 (282)
T ss_pred CC----CcEEEEEeCCHHHHHHHHHHcCCcEe
Confidence 63 58999999999999999999998765
No 31
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.80 E-value=4.3e-19 Score=168.66 Aligned_cols=120 Identities=22% Similarity=0.336 Sum_probs=107.4
Q ss_pred CCCCceEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC-------
Q psy300 29 KTKRGRLFIKNLPF-KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG------- 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~-~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G------- 100 (451)
..++++|||+|||. ++++++|+++|++||.|.+++++++. +|||||+|.+.++|.+|+..++|..+.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~ 106 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 106 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEEC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEE
Confidence 45789999999999 99999999999999999999998874 7899999999999999999887754432
Q ss_pred -------------------------------------------------------CCcHHHHHHHhcccC-cceeeEEee
Q psy300 101 -------------------------------------------------------KITEEEFKEHFGQYG-DIIDAQLLK 124 (451)
Q Consensus 101 -------------------------------------------------------~~tee~L~~~F~~fG-~V~~v~v~~ 124 (451)
.+++++|+++|++|| .|.++.++.
T Consensus 107 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~ 186 (229)
T 2adc_A 107 SKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ 186 (229)
T ss_dssp CSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS
T ss_pred ecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE
Confidence 258999999999999 999999965
Q ss_pred CCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 125 NADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 125 d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
+ ++|||||+|.+.++|.+|+..+|++.+
T Consensus 187 ~----~~g~afV~f~~~~~A~~Ai~~l~g~~~ 214 (229)
T 2adc_A 187 K----DRKMALIQMGSVEEAVQALIDLHNHDL 214 (229)
T ss_dssp S----STTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred C----CCcEEEEEECCHHHHHHHHHHHCCCcc
Confidence 3 379999999999999999999998765
No 32
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.79 E-value=2.6e-19 Score=165.35 Aligned_cols=118 Identities=22% Similarity=0.343 Sum_probs=106.0
Q ss_pred CCceEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC---------
Q psy300 31 KRGRLFIKNLPF-KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG--------- 100 (451)
Q Consensus 31 ~~~~lfVgnLp~-~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G--------- 100 (451)
.+++|||+|||. ++++++|+++|++||.|.++++++++ +|||||+|.+.++|.+|+..++|..+.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 468999999999 99999999999999999999998764 7899999999999999999887754433
Q ss_pred -----------------------------------------------------CCcHHHHHHHhcccC-cceeeEEeeCC
Q psy300 101 -----------------------------------------------------KITEEEFKEHFGQYG-DIIDAQLLKNA 126 (451)
Q Consensus 101 -----------------------------------------------------~~tee~L~~~F~~fG-~V~~v~v~~d~ 126 (451)
.+++++|+++|++|| .|.++.++.+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~- 156 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 156 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST-
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC-
Confidence 258999999999999 9999999764
Q ss_pred CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 127 DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 127 ~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++|+|||+|.+.++|.+|+..+|++.+
T Consensus 157 ---~~g~afV~f~~~~~A~~A~~~l~g~~~ 183 (198)
T 1qm9_A 157 ---DRKMALIQMGSVEEAVQALIDLHNHDL 183 (198)
T ss_dssp ---TSSCEEEECSSHHHHHHHHHHHTSSCC
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHhcCCcc
Confidence 279999999999999999999998775
No 33
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.65 E-value=3.5e-16 Score=129.86 Aligned_cols=72 Identities=28% Similarity=0.502 Sum_probs=67.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.+.++|||+|||.++|+++|+++|++||+|.++++++++ +|+++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr 89 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSK 89 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 356899999999999999999999999999999999998 899999999999999999999999999888773
No 34
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.62 E-value=1.7e-15 Score=128.15 Aligned_cols=71 Identities=14% Similarity=0.209 Sum_probs=67.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.+.++|||+|||.++++++|+++|++||.|.++++++++ ||+++|||||+|.+.++|.+|++.|||+.+.|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g 75 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG 75 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 467899999999999999999999999999999999998 89999999999999999999999999998876
No 35
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.59 E-value=7.1e-15 Score=122.24 Aligned_cols=75 Identities=24% Similarity=0.425 Sum_probs=69.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.......++|||+|||.++++++|+++|++||.|.+++++++++|+++|||||+|.+.++|.+|+..|||..+.|
T Consensus 9 ~~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 83 (105)
T 2dnh_A 9 ESRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMP 83 (105)
T ss_dssp CCSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCT
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCC
Confidence 334457899999999999999999999999999999999999999999999999999999999999999988775
No 36
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.57 E-value=6.5e-15 Score=124.63 Aligned_cols=86 Identities=28% Similarity=0.451 Sum_probs=78.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC-------
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK------- 101 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~------- 101 (451)
....++|||+|||.++++++|+++|++||.|.+++++++ +.++|||||+|.+.++|.+|+..+||..+.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 82 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYY 82 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEe
Confidence 446789999999999999999999999999999999865 56699999999999999999999999999883
Q ss_pred ------------CcHHHHHHHhcccCc
Q psy300 102 ------------ITEEEFKEHFGQYGD 116 (451)
Q Consensus 102 ------------~tee~L~~~F~~fG~ 116 (451)
.++++|.++|++||.
T Consensus 83 ~~~~~~~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 83 NANRAFQKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CHHHHTTTSCHHHHHHHHHHHHHHHCC
T ss_pred cCChhhhhhhHhHhHHHHHHHHHHhCC
Confidence 478999999999986
No 37
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.57 E-value=2.9e-15 Score=121.49 Aligned_cols=69 Identities=26% Similarity=0.457 Sum_probs=63.9
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYG--DIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G--~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.+|||+|||.++++++|+++|++|| .|.++++++++ +|+++|||||+|.+.++|.+|++.|||..+.|+
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr 73 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 73 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCE
Confidence 5899999999999999999999999 99999999997 999999999999999999999999999988884
No 38
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=7.5e-15 Score=122.77 Aligned_cols=73 Identities=23% Similarity=0.406 Sum_probs=67.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
+....++|||+|||.++|+++|+++|++||+|.+|+++++++|+++|||||+|.+.++|.+|+. +++..+.|+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr 79 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKET 79 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTT
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCE
Confidence 3446789999999999999999999999999999999999889999999999999999999999 899888885
No 39
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.56 E-value=1.1e-14 Score=116.68 Aligned_cols=71 Identities=31% Similarity=0.491 Sum_probs=66.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.+.++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+..+||..+.|
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 75 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 467899999999999999999999999999999999997 99999999999999999999999999987776
No 40
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=1.2e-14 Score=119.60 Aligned_cols=74 Identities=23% Similarity=0.424 Sum_probs=69.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeE-EEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDII-DAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~-~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.....++|||+|||.++++++|+++|++||.|. ++++++++ +|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGA 80 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCC
Confidence 345789999999999999999999999999999 99999997 999999999999999999999999999887764
No 41
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.55 E-value=1.5e-14 Score=114.92 Aligned_cols=69 Identities=17% Similarity=0.440 Sum_probs=65.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..+|||+|||.++++++|+++|++||+|.++++++++ +|+++|||||+|.+.++|.+|+..+||..+.|
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g 70 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG 70 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC
Confidence 3689999999999999999999999999999999996 89999999999999999999999999988766
No 42
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=118.31 Aligned_cols=74 Identities=32% Similarity=0.547 Sum_probs=69.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....+.++|||+|||.++++++|+++|++||.|.+++++++++|+++|||||+|.+.++|.+|+..+||..+.|
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 85 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE 85 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34557889999999999999999999999999999999999999999999999999999999999999987765
No 43
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.55 E-value=3e-15 Score=123.45 Aligned_cols=70 Identities=10% Similarity=0.267 Sum_probs=64.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCC--eEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCcc
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGD--IIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKP 97 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~--I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~ 97 (451)
....+.+|||+|||+++|+++|+++|++||. +.+|++++|+ +|++||||||+|.+.++|.+|++.+||..
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~ 77 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLH 77 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSS
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCC
Confidence 3457899999999999999999999999995 6799999998 89999999999999999999999999863
No 44
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.55 E-value=3.5e-15 Score=123.74 Aligned_cols=70 Identities=17% Similarity=0.286 Sum_probs=67.2
Q ss_pred CCceEEEcCCCC------CCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 31 KRGRLFIKNLPF------KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 31 ~~~~lfVgnLp~------~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..++|||+|||. ++++++|+++|++||.|.++++++++ ||+++|||||+|.+.++|.+|+..|||..+.|
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 468999999999 99999999999999999999999998 79999999999999999999999999999987
No 45
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.55 E-value=9e-15 Score=124.33 Aligned_cols=69 Identities=28% Similarity=0.516 Sum_probs=63.8
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..++|||+|||.++++++|+++|++||.|.+|+++++. +.++|||||+|.+.++|.+|++.|+|..+.|
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g 72 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLND 72 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEECC
Confidence 46789999999999999999999999999999999985 4589999999999999999999999988776
No 46
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=6.3e-15 Score=117.81 Aligned_cols=72 Identities=21% Similarity=0.413 Sum_probs=67.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.+.++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 75 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQ 75 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeE
Confidence 477899999999999999999999999999999999987 899999999999999999999999999887763
No 47
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=2.4e-14 Score=118.78 Aligned_cols=74 Identities=16% Similarity=0.336 Sum_probs=69.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhcc-CCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCcc-CCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP-YKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~-~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~-f~G 100 (451)
.+..+.++|||+|||.++++++|+++|++ ||.|.+++++++.+|+++|||||+|.+.++|.+|+..+++.. +.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 34557899999999999999999999999 999999999999999999999999999999999999999988 776
No 48
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=2.2e-14 Score=118.98 Aligned_cols=74 Identities=26% Similarity=0.478 Sum_probs=68.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
+....+.++|||+|||.++++++|+++|++||.|.+++++++ +|.++|||||+|.+.++|.+|+..||+..+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT 82 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 344558899999999999999999999999999999999999 99999999999999999999999999987765
No 49
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.6e-14 Score=117.58 Aligned_cols=75 Identities=23% Similarity=0.385 Sum_probs=69.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..+..+.++|||+|||.++++++|+++|++||.|.++++++++ +++++|||||+|.+.++|.+|+..|||..+.|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (95)
T 2cqc_A 9 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 84 (95)
T ss_dssp CCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3345578899999999999999999999999999999999997 79999999999999999999999999987776
No 50
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.55 E-value=1.8e-14 Score=119.92 Aligned_cols=74 Identities=26% Similarity=0.409 Sum_probs=68.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
...+.++|||+|||.++++++|+++|++||.|.++.+++++ +|.++|||||+|.+.++|.+|+..+||..+.|+
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 93 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 93 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCc
Confidence 34467899999999999999999999999999999999997 899999999999999999999999999887763
No 51
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.54 E-value=1e-14 Score=116.32 Aligned_cols=73 Identities=23% Similarity=0.383 Sum_probs=68.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
..+.++|||+|||.++++++|+++|++||+|.++++++++ +|+++|||||+|.+.++|.+|++.+||..+.|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 77 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 77 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 3578999999999999999999999999999999999986 899999999999999999999999999888763
No 52
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.54 E-value=2.6e-14 Score=117.77 Aligned_cols=75 Identities=27% Similarity=0.372 Sum_probs=70.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCcc
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIID--------AQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKP 97 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~--------i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~ 97 (451)
......++|||+|||.++++++|+++|++||.|.+ +++++++ +|+++|||||+|.+.++|.+|++.|||..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34567899999999999999999999999999999 9999997 89999999999999999999999999998
Q ss_pred CCCC
Q psy300 98 YKGK 101 (451)
Q Consensus 98 f~G~ 101 (451)
+.|+
T Consensus 88 ~~g~ 91 (99)
T 2la6_A 88 FSGN 91 (99)
T ss_dssp SSSS
T ss_pred eCCc
Confidence 8874
No 53
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=2.5e-14 Score=116.57 Aligned_cols=71 Identities=30% Similarity=0.550 Sum_probs=67.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.+.++|||+|||.++++++|+++|++||.|.++++++++ +++++|||||+|.+.++|.+|+..+|+..+.|
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG 74 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 467899999999999999999999999999999999987 89999999999999999999999999987765
No 54
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.54 E-value=2e-15 Score=123.18 Aligned_cols=69 Identities=17% Similarity=0.398 Sum_probs=62.5
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcC-CccCCC
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYG-DIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSN-KKPYKG 100 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G-~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~ln-g~~f~G 100 (451)
+++|||+|||.++|+++|+++|++|| +|.+|++++++ +|.++|||||+|.+.++|.+|++.++ +..+.|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g 72 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG 72 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC
Confidence 46899999999999999999999999 79999999997 89999999999999999999998874 444544
No 55
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=2.2e-14 Score=118.97 Aligned_cols=73 Identities=25% Similarity=0.396 Sum_probs=68.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
+..+.++|||+|||.++++++|+++|++||.|.+|++++++ +|+++|||||+|.+.++|.+|+..||+..+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 84 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 84 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 45578999999999999999999999999999999999997 89999999999999999999999999987665
No 56
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.54 E-value=3.1e-14 Score=119.79 Aligned_cols=76 Identities=30% Similarity=0.527 Sum_probs=70.3
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.....+.++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|++.++|..+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 4455678999999999999999999999999999999999987 899999999999999999999999999888774
No 57
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=2.4e-14 Score=118.99 Aligned_cols=74 Identities=22% Similarity=0.385 Sum_probs=69.1
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.+....++|||+|||.++++++|+++|++||.|.++++++++ +++++|||||+|.+.++|.+|+..|++..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 84 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 345578999999999999999999999999999999999998 89999999999999999999999999987765
No 58
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.53 E-value=1.2e-14 Score=115.39 Aligned_cols=69 Identities=23% Similarity=0.388 Sum_probs=64.2
Q ss_pred CceEEEcCCCCCC------CHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 32 RGRLFIKNLPFKI------TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 32 ~~~lfVgnLp~~v------te~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.++|||+|||.++ ++++|+++|++||+|.+++++ ..+|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~ 75 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 75 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCc
Confidence 3789999999999 779999999999999999987 35899999999999999999999999999999885
No 59
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.53 E-value=1.6e-14 Score=118.38 Aligned_cols=70 Identities=20% Similarity=0.413 Sum_probs=66.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
+.++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+..+||..+.|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 71 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS 71 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 46899999999999999999999999999999999997 89999999999999999999999999987766
No 60
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.53 E-value=2e-14 Score=117.21 Aligned_cols=73 Identities=27% Similarity=0.368 Sum_probs=68.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....++|||+|||.++++++|+++|++||+|.+++++++++|+++|||||+|.+.++|.+|+..+|+..+.|
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG 84 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456789999999999999999999999999999999999899999999999999999999999999988776
No 61
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.53 E-value=2e-14 Score=118.20 Aligned_cols=72 Identities=28% Similarity=0.551 Sum_probs=67.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..+.++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+..+||..+.|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG 77 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4578899999999999999999999999999999999998 99999999999999999999999999987765
No 62
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.53 E-value=3.9e-14 Score=119.82 Aligned_cols=75 Identities=35% Similarity=0.556 Sum_probs=69.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..+..+.++|||+|||.++++++|+++|++||.|.+|++++++ +|.++|||||+|.+.++|.+|+..|+|..+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 84 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG 84 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3445678999999999999999999999999999999999997 99999999999999999999999999987765
No 63
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.4e-14 Score=116.91 Aligned_cols=72 Identities=22% Similarity=0.495 Sum_probs=67.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....++|||+|||.++++++|+++|++||.|.++++++++ +++++|||||+|.+.++|.+|++ +++..+.|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 78 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG 78 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC
Confidence 44578999999999999999999999999999999999987 89999999999999999999998 89887765
No 64
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=1.7e-14 Score=119.58 Aligned_cols=74 Identities=19% Similarity=0.387 Sum_probs=68.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.+..+.++|||+|||.++++++|+++|++||.|.++.+++++ +++++|||||+|.+.++|.+|+..|||..+.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 8 PDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp SCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 345578999999999999999999999999999999999987 79999999999999999999999999987765
No 65
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.6e-14 Score=119.16 Aligned_cols=75 Identities=24% Similarity=0.471 Sum_probs=70.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
......++|||+|||.++++++|+++|++||.|.+++++++.+|.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~ 94 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTP 94 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCC
Confidence 344577899999999999999999999999999999999999999999999999999999999999999988764
No 66
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.52 E-value=3.5e-14 Score=113.97 Aligned_cols=72 Identities=21% Similarity=0.596 Sum_probs=65.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...+.++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|++. ++..+.|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g 79 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDG 79 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECC
Confidence 34578899999999999999999999999999999999997 899999999999999999999965 5555555
No 67
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.52 E-value=3.9e-14 Score=118.15 Aligned_cols=76 Identities=24% Similarity=0.503 Sum_probs=70.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.....+.++|||+|||.++++++|+++|++||.|.+++++++.+|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 23 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 98 (107)
T 3ulh_A 23 GAGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGR 98 (107)
T ss_dssp -CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCc
Confidence 3345678999999999999999999999999999999999999999999999999999999999999999887763
No 68
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.52 E-value=1.7e-14 Score=116.81 Aligned_cols=78 Identities=19% Similarity=0.228 Sum_probs=71.5
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC------CcH
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK------ITE 104 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~------~te 104 (451)
....|||+||++++|+++|+++|.+||+|.++++.. ++|||||+|.++++|.+|++.||+..+.|+ .++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 577999999999999999999999999999999964 699999999999999999999999999985 588
Q ss_pred HHHHHHhcc
Q psy300 105 EEFKEHFGQ 113 (451)
Q Consensus 105 e~L~~~F~~ 113 (451)
.++..+|++
T Consensus 81 ~~~~~~~~~ 89 (89)
T 2wbr_A 81 NEVQSIMQH 89 (89)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHhhC
Confidence 888888753
No 69
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.52 E-value=3.4e-14 Score=118.35 Aligned_cols=75 Identities=27% Similarity=0.587 Sum_probs=68.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeEC-C-CCCceeEEEEEEccHHHHHHHHHhc-CCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-A-DGKLKGCGFINYANKISAVKAILKS-NKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d-~-tg~skG~aFV~F~~~~~A~~Al~~l-ng~~f~G 100 (451)
.......++|||+|||.++++++|+++|++||.|.+|+++++ . +++++|||||+|.+.++|.+|+..+ |+..+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g 86 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG 86 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC
Confidence 334567899999999999999999999999999999999998 4 9999999999999999999999999 8887765
No 70
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.52 E-value=2.3e-14 Score=120.26 Aligned_cols=74 Identities=24% Similarity=0.363 Sum_probs=68.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....+.++|||+|||.++++++|+++|++||.|.+++++++. +|.++|||||+|.+.++|.+|+..|||..+.|
T Consensus 21 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 95 (110)
T 1oo0_B 21 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 95 (110)
T ss_dssp CCBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 344567899999999999999999999999999999999987 89999999999999999999999999987765
No 71
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=3.1e-14 Score=115.78 Aligned_cols=74 Identities=27% Similarity=0.510 Sum_probs=68.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....+.++|||+|||.++++++|+++|++||+|.++++++++ +++++|||||+|.+.++|.+|++.+|+..+.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 85 (94)
T 2e5h_A 11 GLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG 85 (94)
T ss_dssp SCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 345578899999999999999999999999999999999987 79999999999999999999999999988776
No 72
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.51 E-value=3.8e-14 Score=120.00 Aligned_cols=75 Identities=24% Similarity=0.422 Sum_probs=69.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.......++|||+|||.++++++|+++|++||.|.++++++++ +++++|||||+|.+.++|.+|+..||+..+.|
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 94 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM 94 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3345567899999999999999999999999999999999998 99999999999999999999999999987765
No 73
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.51 E-value=2.1e-14 Score=117.31 Aligned_cols=71 Identities=27% Similarity=0.434 Sum_probs=66.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEE-EEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDA-QLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i-~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.+.++|||+|||.++++++|+++|++||.|.++ ++++++ +|.++|||||+|.+.++|.+|+..+||..+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 75 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 75 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 468899999999999999999999999999999 999985 99999999999999999999999999987654
No 74
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.51 E-value=4.7e-14 Score=118.29 Aligned_cols=73 Identities=27% Similarity=0.495 Sum_probs=67.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcC------CccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSN------KKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~ln------g~~f~G 100 (451)
+..+.++|||+|||.++++++|+++|++||.|.+|++++++ +|.++|||||+|.+.++|.+|+..+| +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 45578899999999999999999999999999999999997 89999999999999999999999999 776665
No 75
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.51 E-value=8.5e-14 Score=112.75 Aligned_cols=72 Identities=28% Similarity=0.557 Sum_probs=67.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
..+.++|||+|||.++++++|+++|++||.|.+++++++ +|+++|||||+|.+.++|.+|+..|++..+.|+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~ 76 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKLSGR 76 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTB
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 457789999999999999999999999999999999985 889999999999999999999999999887763
No 76
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.51 E-value=4e-14 Score=120.60 Aligned_cols=72 Identities=32% Similarity=0.498 Sum_probs=67.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....++|||+|||.++++++|+++|++||.|.++.++.+.+|+++|||||+|.+.++|.+|+..|||..+.|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g 75 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG 75 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 346789999999999999999999999999999999999899999999999999999999999999987765
No 77
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.51 E-value=4.6e-14 Score=124.03 Aligned_cols=88 Identities=11% Similarity=0.245 Sum_probs=76.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC--
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGD---IIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK-- 101 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~---I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~-- 101 (451)
......++|||+|||+++|+++|+++|++||. |.+|++++++.|+++|||||+|.+.++|.+|+. +|+..+.|+
T Consensus 39 ~~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 39 PEGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SSCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 34456789999999999999999999999999 899999999889999999999999999999999 999988885
Q ss_pred ----CcHHHHHHHhcccC
Q psy300 102 ----ITEEEFKEHFGQYG 115 (451)
Q Consensus 102 ----~tee~L~~~F~~fG 115 (451)
.+..++....+..|
T Consensus 118 ~V~~a~~~e~~~~~~~~~ 135 (136)
T 2hgl_A 118 EVFKSHRTEMDWVLKHSG 135 (136)
T ss_dssp EEEECCHHHHHHHHTTSC
T ss_pred EEEECChHHHHHHHhhcC
Confidence 35566666555544
No 78
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=6.3e-14 Score=118.20 Aligned_cols=73 Identities=29% Similarity=0.462 Sum_probs=68.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....++|||+|||.++++++|+++|++||.|.+++++++++|+++|||||+|.+.++|.+|+..||+..+.|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 83 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD 83 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 3456789999999999999999999999999999999999999999999999999999999999999987765
No 79
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.50 E-value=4.7e-14 Score=119.85 Aligned_cols=76 Identities=26% Similarity=0.380 Sum_probs=69.8
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.....+.++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+..+||..+.|+
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 110 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTK 110 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 3445577999999999999999999999999999999999987 899999999999999999999999999887763
No 80
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=3.7e-14 Score=117.26 Aligned_cols=73 Identities=27% Similarity=0.577 Sum_probs=68.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...+.++|||+|||.++++++|+++|++||.|.++++++++ +++++|||||+|.+.++|.+|+..||+..+.|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 81 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34577899999999999999999999999999999999987 89999999999999999999999999987765
No 81
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.50 E-value=4.7e-14 Score=113.47 Aligned_cols=68 Identities=22% Similarity=0.508 Sum_probs=65.0
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+ .++|..+.|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g 74 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG 74 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC
Confidence 5799999999999999999999999999999999997 9999999999999999999999 999988776
No 82
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.50 E-value=3e-14 Score=118.65 Aligned_cols=71 Identities=30% Similarity=0.571 Sum_probs=66.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 98 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f 98 (451)
.....++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+..||+..+
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 45578999999999999999999999999999999999987 899999999999999999999999999765
No 83
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.50 E-value=7.7e-14 Score=115.73 Aligned_cols=73 Identities=16% Similarity=0.312 Sum_probs=66.6
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....+.++|||+|||.++++++|+++|++|| |.++++++++ +|+++|||||+|.+.++|.+|+ .+|+..+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 82 (103)
T 2dng_A 9 ELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD 82 (103)
T ss_dssp CCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC
Confidence 33455789999999999999999999999997 9999999998 8999999999999999999999 899977655
No 84
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.50 E-value=4.9e-14 Score=122.48 Aligned_cols=76 Identities=22% Similarity=0.392 Sum_probs=70.1
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
..+..+.++|||+|||.++++++|+++|++||+|.++++++++ +|+++|||||+|.+.++|.+|+..+||..+.|+
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 3445678899999999999999999999999999999999987 899999999999999999999999999888773
No 85
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.50 E-value=2.3e-14 Score=111.71 Aligned_cols=67 Identities=24% Similarity=0.428 Sum_probs=63.5
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 34 ~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
+|||+|||.++++++|+++|++||+|.++++++++ +|+++|||||+|.+.++|++|++ +++..+.|+
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~ 68 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNK 68 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCE
Confidence 58999999999999999999999999999999987 89999999999999999999997 899888774
No 86
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=9.4e-14 Score=115.10 Aligned_cols=74 Identities=31% Similarity=0.640 Sum_probs=67.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.......++|||+|||.++++++|+++|++||.|.+++++++..+ ++|||||+|.+.++|.+|+..|++..+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVVEG 82 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 344567899999999999999999999999999999999988654 89999999999999999999999987765
No 87
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=6.7e-14 Score=116.66 Aligned_cols=74 Identities=26% Similarity=0.429 Sum_probs=67.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIID-AQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~-i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.+....++|||+|||+++++++|+++|++||.|.+ ++++++.+|+++|||||+|.+.++|.+|+.. ++..+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr 84 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHR 84 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCc
Confidence 34457789999999999999999999999999987 8898888999999999999999999999998 88877764
No 88
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.50 E-value=5.1e-14 Score=126.48 Aligned_cols=71 Identities=18% Similarity=0.349 Sum_probs=66.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYG--DIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G--~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
..++|||+|||.++++++|+++|++|| .|.++++++|+ +|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr 127 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGE 127 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 468999999999999999999999999 99999999997 999999999999999999999999999988874
No 89
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.7e-14 Score=118.90 Aligned_cols=75 Identities=19% Similarity=0.352 Sum_probs=68.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeE--------EEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCc
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDII--------DAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKK 96 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~--------~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~ 96 (451)
..+....++|||+|||.++++++|+++|++||.|. .+++++++ +|+++|||||+|.+.++|.+|+..|||.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~ 88 (113)
T 2cpe_A 9 PDEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGK 88 (113)
T ss_dssp CCCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCC
Confidence 34556789999999999999999999999999999 69999996 8999999999999999999999999998
Q ss_pred cCCC
Q psy300 97 PYKG 100 (451)
Q Consensus 97 ~f~G 100 (451)
.+.|
T Consensus 89 ~~~g 92 (113)
T 2cpe_A 89 DFQG 92 (113)
T ss_dssp EETT
T ss_pred ccCC
Confidence 7765
No 90
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.49 E-value=2.3e-14 Score=112.08 Aligned_cols=68 Identities=24% Similarity=0.599 Sum_probs=63.7
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
++|||+|||.++++++|+++|++||+|.++++++++ +|+++|||||+|.+.++|.+|+..++ ..+.|+
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~ 69 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSK 69 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCE
Confidence 589999999999999999999999999999999987 89999999999999999999999988 777664
No 91
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=5.3e-14 Score=116.61 Aligned_cols=71 Identities=30% Similarity=0.633 Sum_probs=67.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
..++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+..+||..+.|+
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGR 78 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSS
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCc
Confidence 46899999999999999999999999999999999987 899999999999999999999999999888763
No 92
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=6.6e-14 Score=116.33 Aligned_cols=72 Identities=28% Similarity=0.473 Sum_probs=66.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-C-CCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-D-GKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-t-g~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....+.++|||+|||.++++++|+++|++|| |.++++++++ + |+++|||||+|.+.++|.+|+ .+++..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 83 (104)
T 1wi8_A 10 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN 83 (104)
T ss_dssp CCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT
T ss_pred CCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC
Confidence 3455779999999999999999999999999 9999999987 5 999999999999999999999 999987665
No 93
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.48 E-value=4e-14 Score=113.48 Aligned_cols=70 Identities=23% Similarity=0.358 Sum_probs=65.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCC-ceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGK-LKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~-skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..++|||+|||.++++++|+++|++||.|.+++++++. ++. ++|||||+|.+.++|.+|+..+||..+.|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 74 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG 74 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC
Confidence 56899999999999999999999999999999999887 444 89999999999999999999999988776
No 94
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=8.8e-14 Score=115.67 Aligned_cols=73 Identities=22% Similarity=0.556 Sum_probs=67.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....+.++|||+|||.++++++|+++|++||.|.+|++++++ +++++|||||+|.+.++|.+|+.. ++..+.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g 84 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG 84 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC
Confidence 345678999999999999999999999999999999999997 899999999999999999999998 8887776
No 95
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.48 E-value=4.9e-14 Score=117.71 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=66.0
Q ss_pred CCCCceEEEcCCCCCC------CHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 29 KTKRGRLFIKNLPFKI------TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~v------te~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
....++|||+|||.++ ++++|+++|++||.|.+++++ ..+|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~ 89 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQ 89 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTT
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCC
Confidence 4457899999999999 789999999999999999998 35899999999999999999999999999988874
No 96
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=3.3e-14 Score=117.56 Aligned_cols=72 Identities=24% Similarity=0.375 Sum_probs=67.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..+.++|||+|||.++++++|+++|++||.|.++++++++ +++++|||||+|.+.++|.+|+..||+..+.|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 81 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4578899999999999999999999999999999999986 89999999999999999999999999987665
No 97
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=9.1e-14 Score=117.78 Aligned_cols=74 Identities=27% Similarity=0.560 Sum_probs=67.7
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.......++|||+|||.++++++|+++|++||.|.++++++++ +++++|||||+|.+.++|.+|+..+++ .+.|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g 85 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG 85 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC
Confidence 4455678999999999999999999999999999999999987 899999999999999999999999987 5554
No 98
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=4.5e-14 Score=115.86 Aligned_cols=73 Identities=22% Similarity=0.380 Sum_probs=67.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....++|||+|||.++++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|.+|++.+||..+.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 84 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 84 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 44567899999999999999999999999999988888776 89999999999999999999999999987766
No 99
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.48 E-value=5.6e-14 Score=125.39 Aligned_cols=95 Identities=17% Similarity=0.258 Sum_probs=80.7
Q ss_pred EEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCC------------------------------------ccCCC----
Q psy300 61 DAQLLKNADGKLKGCGFINYANKISAVKAILKSNK------------------------------------KPYKG---- 100 (451)
Q Consensus 61 ~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng------------------------------------~~f~G---- 100 (451)
+++++++. .+++|||||+|.+.++|++|+..+++ ++|.|
T Consensus 2 ~~kl~ln~-~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~ 80 (158)
T 2kn4_A 2 QYKLILNG-KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTY 80 (158)
T ss_dssp EEEEEEEC-SSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCT
T ss_pred cEEEEecC-ccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCC
Confidence 46677764 36899999999999999999977542 12222
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++++ .+|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 81 ~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 137 (158)
T 2kn4_A 81 RTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVL 137 (158)
T ss_dssp TCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEES
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4799999999999999999999998 4799999999999999999999999988654
No 100
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=8.7e-14 Score=115.90 Aligned_cols=72 Identities=19% Similarity=0.395 Sum_probs=64.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.....++|||+|||+++++++|+++|++||.+ +++++++++|+++|||||+|.+.++|++|+. +|+..+.|+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr 82 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHR 82 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 34567899999999999999999999999955 9999999999999999999999999999994 788877763
No 101
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.48 E-value=8.4e-14 Score=114.24 Aligned_cols=71 Identities=32% Similarity=0.438 Sum_probs=65.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC----CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA----DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~----tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.+.++|||+|||.++++++|+++|++||.|.+++++++. +++++|||||+|.+.++|.+|+..|||..+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 467899999999999999999999999999999999875 34899999999999999999999999987765
No 102
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=4.7e-14 Score=121.29 Aligned_cols=74 Identities=19% Similarity=0.375 Sum_probs=65.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeE-CCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLK-NADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~-d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
......++|||+|||.++++++|+++|++||.|.++.++. +.+|+++|||||+|.+.++|.+|+. +|+..+.|+
T Consensus 20 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 94 (124)
T 1wel_A 20 SPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNR 94 (124)
T ss_dssp SCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTS
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCc
Confidence 3445678999999999999999999999999998855544 4599999999999999999999999 999998884
No 103
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.47 E-value=9.9e-14 Score=121.23 Aligned_cols=75 Identities=21% Similarity=0.409 Sum_probs=69.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.......++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+..+||..+.|
T Consensus 36 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 111 (139)
T 1u6f_A 36 NPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN 111 (139)
T ss_dssp SCCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3445567899999999999999999999999999999999987 89999999999999999999999999987765
No 104
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.47 E-value=9.3e-14 Score=119.35 Aligned_cols=74 Identities=26% Similarity=0.402 Sum_probs=68.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....+.++|||+|||.++++++|+++|++||.|.+|.++++. +|.++|||||+|.+.++|.+|+..|||..+.|
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 91 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG 91 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 345567899999999999999999999999999999999997 99999999999999999999999999987765
No 105
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.47 E-value=2.8e-14 Score=115.23 Aligned_cols=69 Identities=28% Similarity=0.560 Sum_probs=65.3
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.++|||+|||.++++++|+++|++||+|.++++++++ +|+++|||||+|.+.+ |.+|+..+||..+.|+
T Consensus 1 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~ 70 (90)
T 2ki2_A 1 MRNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGR 70 (90)
T ss_dssp CEEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSS
T ss_pred CcEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCe
Confidence 3689999999999999999999999999999999987 8999999999999999 9999999999988774
No 106
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.47 E-value=3.8e-14 Score=115.49 Aligned_cols=73 Identities=22% Similarity=0.394 Sum_probs=65.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
....++|||+|||.++++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|.+|+..+|+..+.|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr 85 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSR 85 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCc
Confidence 3456899999999999999999999999999989888876 899999999999999999999999999888763
No 107
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=3.8e-14 Score=119.77 Aligned_cols=70 Identities=17% Similarity=0.367 Sum_probs=65.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+ .+|+..+.|
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 93 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG 93 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC
Confidence 346899999999999999999999999999999999988 7999999999999999999999 999988776
No 108
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=1.4e-13 Score=114.11 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=65.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
......++|||+|||.++++++|+++|++||.|.+|+++++..+ ++|||||+|.+.++|.+|+..|++..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~~g 82 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKILG 82 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCcCC
Confidence 34557899999999999999999999999999999999998533 79999999999999999999999986654
No 109
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.47 E-value=1.7e-13 Score=111.00 Aligned_cols=71 Identities=21% Similarity=0.418 Sum_probs=66.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....++|||+|||.++++++|+++|++| .|.+++++++.+|+++|||||+|.+.++|.+|+. +||..+.|
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g 76 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG 76 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC
Confidence 34567899999999999999999999999 9999999999999999999999999999999999 99988776
No 110
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.47 E-value=1.8e-13 Score=122.16 Aligned_cols=75 Identities=25% Similarity=0.308 Sum_probs=68.9
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.......++|||+|||.++++++|+++|++||.|.+|++++++ ++.++|||||+|.+.++|.+|+..||+..+.|
T Consensus 33 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 108 (156)
T 1h2v_Z 33 EKLLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 108 (156)
T ss_dssp CTTTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3344578999999999999999999999999999999999998 89999999999999999999999999987655
No 111
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.46 E-value=1.4e-13 Score=118.16 Aligned_cols=73 Identities=21% Similarity=0.462 Sum_probs=68.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....++|||+|||.++++++|+++|++||.|.+++++++.+|+++|||||+|.+.++|.+|+..+||..+.|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 103 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG 103 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4456789999999999999999999999999999999998899999999999999999999999999987766
No 112
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.46 E-value=4.1e-14 Score=122.94 Aligned_cols=72 Identities=14% Similarity=0.248 Sum_probs=66.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE--EEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCc----cCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIID--AQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKK----PYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~--i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~----~f~G 100 (451)
.....++|||+|||.++++++|+++|++||.|.+ |++++++ +|+++|||||+|.+. +|.+|+..|||. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3457789999999999999999999999999977 9999998 999999999999999 999999999998 6655
No 113
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.46 E-value=1.4e-13 Score=117.59 Aligned_cols=73 Identities=10% Similarity=0.255 Sum_probs=67.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGD---IIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~---I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.....++|||+|||+++++++|+++|++||. |.+|+++++++|+++|||||+|.+.++|.+|+. +++..+.|+
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr 88 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHR 88 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCe
Confidence 3456789999999999999999999999999 899999999899999999999999999999999 899887773
No 114
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-13 Score=115.95 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=72.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCC---eEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC---
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGD---IIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK--- 101 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~---I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~--- 101 (451)
.....++|||+|||+++++++|+++|++||. |.++++++++.|+++|||||+|.+.++|.+|+. +++..+.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 4457789999999999999999999999998 899999999889999999999999999999999 899888874
Q ss_pred ---CcHHHHHHHhc
Q psy300 102 ---ITEEEFKEHFG 112 (451)
Q Consensus 102 ---~tee~L~~~F~ 112 (451)
.+..++.....
T Consensus 86 V~~a~~~~~~~~~~ 99 (107)
T 2lmi_A 86 VYEINNEDVDALMK 99 (107)
T ss_dssp CEECCHHHHHHHHH
T ss_pred EEECCHHHHHHHHH
Confidence 34455554443
No 115
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.4e-13 Score=119.57 Aligned_cols=73 Identities=21% Similarity=0.332 Sum_probs=64.8
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFK----EHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~----~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.+..+.++|||+|||.++++++|+ ++|++||.|.+|.+. .+++++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 24 ~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~--~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr 100 (127)
T 2a3j_A 24 PHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVD--LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGN 100 (127)
T ss_dssp CCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEEC--CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEec--cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCC
Confidence 345568899999999999999876 699999999998875 3788999999999999999999999999988774
No 116
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.45 E-value=7.3e-14 Score=115.52 Aligned_cols=73 Identities=27% Similarity=0.466 Sum_probs=63.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC--CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA--DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~--tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
......++|||+|||.++++++|+++|++|| |.+++++++. +|+++|||||+|.+.++|.+|+ .++|..+.|+
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~ 88 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNR 88 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTB
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCe
Confidence 3455789999999999999999999999999 9999999986 8999999999999999999999 8999988774
No 117
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=9.8e-14 Score=116.75 Aligned_cols=74 Identities=30% Similarity=0.619 Sum_probs=67.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.......++|||+|||.++++++|+++|++||.|.+++++++.. .++|||||+|.+.++|.+|+..++|..+.|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g 96 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVVEG 96 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEETT
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 44456789999999999999999999999999999999998854 489999999999999999999999988776
No 118
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=3.4e-13 Score=111.70 Aligned_cols=66 Identities=30% Similarity=0.585 Sum_probs=61.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHh
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILK 92 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~ 92 (451)
....+.++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+..
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 10 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp CCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred CccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 345577899999999999999999999999999999999997 899999999999999999999984
No 119
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.3e-13 Score=113.10 Aligned_cols=71 Identities=14% Similarity=0.264 Sum_probs=65.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFK----EHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~----~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....++|||+|||.++++++|+ ++|++||.|.++++++++.+ +|||||+|.+.++|.+|+..+||..+.|
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~~g 79 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKIGS 79 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45577899999999999999999 99999999999999988755 8999999999999999999999987765
No 120
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=1.6e-13 Score=118.48 Aligned_cols=81 Identities=26% Similarity=0.345 Sum_probs=69.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCe----EEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC----
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDI----IDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK---- 101 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I----~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~---- 101 (451)
...++|||+|||+++++++|+++|++||.| .+|+|+++.+|+++|||||+|.+.++|.+|+.. ++..+.|+
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 467899999999999999999999999985 689999999999999999999999999999986 88777764
Q ss_pred --CcHHHHHHHh
Q psy300 102 --ITEEEFKEHF 111 (451)
Q Consensus 102 --~tee~L~~~F 111 (451)
.+..++....
T Consensus 100 ~~a~~~e~~~~~ 111 (123)
T 2dha_A 100 FRSTAAEVQQVL 111 (123)
T ss_dssp EEECHHHHHHHH
T ss_pred EECCHHHHHHHH
Confidence 3445555444
No 121
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.44 E-value=1.3e-13 Score=116.09 Aligned_cols=72 Identities=21% Similarity=0.535 Sum_probs=62.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...+.++|||+|||.++++++|+++|++||.|.+|++++++ +|+++|||||+|.+.++|.+|+..++ ..+.|
T Consensus 21 ~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~-~~l~g 93 (109)
T 2rs2_A 21 MGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS 93 (109)
T ss_dssp -----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC-EEETT
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC-CcCCC
Confidence 44567899999999999999999999999999999999997 89999999999999999999998764 54444
No 122
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.44 E-value=2.1e-13 Score=118.82 Aligned_cols=74 Identities=23% Similarity=0.380 Sum_probs=68.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
...+.++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+..+||..+.|+
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 133 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 133 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 45578999999999999999999999999999999999986 899999999999999999999999999877763
No 123
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.44 E-value=2.2e-13 Score=121.53 Aligned_cols=72 Identities=18% Similarity=0.371 Sum_probs=67.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+..|||..+.|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 139 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 139 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4457899999999999999999999999999999999997 99999999999999999999999999987765
No 124
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=1.2e-13 Score=116.98 Aligned_cols=71 Identities=20% Similarity=0.278 Sum_probs=66.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCe-EEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDI-IDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I-~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..+.++|||+|||.++++++|+++|++||.| .+|+++++++|+++|||||+|.+.++|.+|+.. |+..+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g 83 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG 83 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC
Confidence 4467899999999999999999999999999 899999999999999999999999999999987 8877776
No 125
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.43 E-value=6.6e-14 Score=109.03 Aligned_cols=67 Identities=22% Similarity=0.397 Sum_probs=61.9
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 34 ~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
+|||+|||.++++++|+++|++||+|.++++++++ +|+++|||||+|.+.++|.+|++. ++..+.|+
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~ 68 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLS 68 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTB
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCE
Confidence 69999999999999999999999999999999987 899999999999999999999985 77767663
No 126
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=2.1e-13 Score=114.02 Aligned_cols=72 Identities=25% Similarity=0.348 Sum_probs=65.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEe-ECC-CCCceeEEEEEEccHHHHHHHHHhcC--CccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGD-IIDAQLL-KNA-DGKLKGCGFINYANKISAVKAILKSN--KKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~-I~~i~l~-~d~-tg~skG~aFV~F~~~~~A~~Al~~ln--g~~f~G 100 (451)
..+.++|||+|||.++++++|+++|++||. |.++.++ .+. +|+++|||||+|.+.++|.+|+..++ +..+.|
T Consensus 5 s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 5 SSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred ccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 346789999999999999999999999998 9999998 666 78999999999999999999999996 466665
No 127
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.43 E-value=2.1e-13 Score=116.78 Aligned_cols=69 Identities=22% Similarity=0.515 Sum_probs=65.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..++|||+|||.++++++|+++|++||.|.++++++++ +|.++|||||+|.+.++|.+|+ .+||..+.|
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g 104 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG 104 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC
Confidence 45899999999999999999999999999999999986 9999999999999999999999 899987765
No 128
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.43 E-value=1.3e-13 Score=115.11 Aligned_cols=67 Identities=18% Similarity=0.158 Sum_probs=60.2
Q ss_pred CCCCCCCCceEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCc
Q psy300 25 KKPDKTKRGRLFIKNLPF-KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 96 (451)
Q Consensus 25 ~~~~~~~~~~lfVgnLp~-~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~ 96 (451)
+.....+.++|||+|||. ++++++|+++|++||.|.+++++++ +|||||+|.+.++|.+|+..|++.
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~ 75 (102)
T 1x4d_A 8 QKGRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTTT 75 (102)
T ss_dssp CCCCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcCC
Confidence 344455789999999999 9999999999999999999999865 689999999999999999988864
No 129
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.42 E-value=4.5e-13 Score=120.90 Aligned_cols=72 Identities=25% Similarity=0.376 Sum_probs=66.8
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..+.++|||+|||.++++++|+++|++||.|.+|.++++. +|.++|||||+|.+.++|.+|+..|||..+.|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 141 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 141 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4456789999999999999999999999999999999997 99999999999999999999999999987765
No 130
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.42 E-value=3.1e-13 Score=128.80 Aligned_cols=71 Identities=28% Similarity=0.482 Sum_probs=66.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCC--CeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYG--DIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G--~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
..++|||+|||.++++++|+++|++|| .|.+|+|++++ +|+++|||||+|.+.++|.+||..||+..|.|+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr 140 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQ 140 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTB
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCE
Confidence 567899999999999999999999999 99999999997 999999999999999999999999999988774
No 131
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.8e-13 Score=113.67 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=60.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCC--ccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK--KPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng--~~f~G 100 (451)
..+.++|||+|||.++++++|+++|++||.|.+++++++ ||||||+|.+.++|.+|+..+++ ..+.|
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G 81 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 81 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTSCCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 446789999999999999999999999999999999865 79999999999999999998764 45555
No 132
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.42 E-value=1.5e-13 Score=113.74 Aligned_cols=69 Identities=20% Similarity=0.565 Sum_probs=62.8
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...++|||+|||.++++++|+++|++||.|.+++++++++|+++|||||+|.+.++|.+|+. ++..+.|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g 75 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG 75 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC
Confidence 35689999999999999999999999999999999999999999999999999999999998 5544444
No 133
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.41 E-value=2.6e-13 Score=114.40 Aligned_cols=74 Identities=19% Similarity=0.341 Sum_probs=66.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHH---HHhccCCCeEEEEEeECC-C---CCceeEEEEEEccHHHHHHHHHhcCCccCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFK---EHFGQYGDIIDAQLLKNA-D---GKLKGCGFINYANKISAVKAILKSNKKPYK 99 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~---~~F~~~G~I~~i~l~~d~-t---g~skG~aFV~F~~~~~A~~Al~~lng~~f~ 99 (451)
......++|||+|||.++++++|+ ++|++||+|.+++++++. + ++++|||||+|.+.++|.+|+..|||..+.
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 89 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVD 89 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEET
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEEC
Confidence 345567899999999999999999 999999999999999886 3 356799999999999999999999998877
Q ss_pred C
Q psy300 100 G 100 (451)
Q Consensus 100 G 100 (451)
|
T Consensus 90 g 90 (111)
T 2cpi_A 90 G 90 (111)
T ss_dssp T
T ss_pred C
Confidence 6
No 134
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=7.3e-13 Score=110.92 Aligned_cols=73 Identities=23% Similarity=0.430 Sum_probs=65.2
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.......++|||+|||.++++++|+++|++||.|.++++.. ++.++|||||+|.+.++|.+|++.||+..+.|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 88 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG 88 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECC--SSSSSCCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEE--CCCCCcEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 33455778999999999999999999999999999999954 46689999999999999999999999987765
No 135
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=4.5e-13 Score=110.54 Aligned_cols=70 Identities=31% Similarity=0.443 Sum_probs=63.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....++|||+|||.++++++|+++|++||.| +++++.+++++|||||+|.+.++|.+|+..+|+..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 80 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG 80 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 45578999999999999999999999999987 66667789999999999999999999999999987665
No 136
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=2.7e-13 Score=114.58 Aligned_cols=69 Identities=19% Similarity=0.386 Sum_probs=64.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
..++|||+|||+++++++|+++|++| .|.+|+|+++++|+++|||||+|.+.++|.+|+ .+|+..+.|+
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr 83 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQR 83 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCe
Confidence 45799999999999999999999999 899999999989999999999999999999999 6898877764
No 137
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.40 E-value=3.3e-13 Score=114.32 Aligned_cols=69 Identities=23% Similarity=0.539 Sum_probs=64.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+.. ++..+.|
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g 95 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG 95 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC
Confidence 45899999999999999999999999999999999997 899999999999999999999988 8776655
No 138
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.39 E-value=2.5e-13 Score=115.12 Aligned_cols=69 Identities=23% Similarity=0.414 Sum_probs=61.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-C---CCceeEEEEEEccHHHHHHHHHhc---CCccC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-D---GKLKGCGFINYANKISAVKAILKS---NKKPY 98 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-t---g~skG~aFV~F~~~~~A~~Al~~l---ng~~f 98 (451)
....++|||+|||.++++++|+++|++||+|. +.++.+. + |+++|||||+|.+.++|.+|+..+ +|+.+
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~~~~G~~~ 80 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACLEEDGKLY 80 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSEEETTEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhhhcCCcEE
Confidence 44678999999999999999999999999999 8887776 4 799999999999999999999988 55543
No 139
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.39 E-value=1.9e-13 Score=119.56 Aligned_cols=74 Identities=20% Similarity=0.416 Sum_probs=68.6
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.+..+.++|||+|||.++++++|+++|++||.|.++++++++ +++++|||||+|.+.++|.+|+..|||..+.|
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g 116 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG 116 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 344567899999999999999999999999999999999987 89999999999999999999999999988776
No 140
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=5.9e-13 Score=114.22 Aligned_cols=70 Identities=20% Similarity=0.290 Sum_probs=61.4
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCC--ccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK--KPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng--~~f~G 100 (451)
.....+.++|||+|||.++++++|+++|++||.|.+++++++ ||||||+|.+.++|.+|+..+++ ..+.|
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G 96 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTSVTPVLRG 96 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHHHCCCBTT
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 344557889999999999999999999999999999999865 89999999999999999998874 34444
No 141
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=9.2e-13 Score=104.97 Aligned_cols=68 Identities=31% Similarity=0.506 Sum_probs=62.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhc-CCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS-NKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~l-ng~~f~G 100 (451)
.....++|||+|||.++++++|+++|++||.|.++++++ ++|||||+|.+.++|.+|+..+ ++..+.|
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----~kg~afV~f~~~~~A~~a~~~l~~~~~~~g 76 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----RQQCAFIQFATRQAAEVAAEKSFNKLIVNG 76 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHTTTTTCEETT
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----CCCEEEEEECCHHHHHHHHHHhcCCeeECC
Confidence 445778999999999999999999999999999999986 4899999999999999999998 8887776
No 142
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.39 E-value=6e-13 Score=110.65 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=59.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCcc
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 97 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~ 97 (451)
...++++|||+|||.++++++|+++|++||.|.++++++ +||||||+|.+.++|.+|+..+++..
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~AFVef~~~~~A~~Av~~ln~~~ 81 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----KKRQALVEFEDVLGACNAVNYAADNQ 81 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHHHSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----CCCEEEEEECCHHHHHHHHHHhcCCC
Confidence 445788999999999999999999999999999999985 48999999999999999999998764
No 143
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.38 E-value=7.9e-13 Score=114.58 Aligned_cols=72 Identities=29% Similarity=0.498 Sum_probs=64.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeE--EEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDII--DAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~--~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.....++|||+|||+++++++|+++|++| .|. +|+++++++|+++|||||+|.+.++|.+|+.. ++..+.|+
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR 111 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHR 111 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCE
Confidence 44567899999999999999999999999 677 89999998899999999999999999999985 66777664
No 144
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.38 E-value=2.9e-13 Score=119.35 Aligned_cols=72 Identities=19% Similarity=0.394 Sum_probs=64.4
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.....++|||+|||+++++++|+++|++|| |.+|+|+++++|+++|||||+|.+.++|.+|+ .+|+..+.|+
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR 113 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHR 113 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCE
Confidence 344678999999999999999999999999 67999999989999999999999999999999 7898887764
No 145
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.38 E-value=9.4e-13 Score=108.30 Aligned_cols=69 Identities=38% Similarity=0.605 Sum_probs=63.0
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....+.++|||+|||.++++++|+++|++||.|.++++.++ +|||||+|.+.++|.+|+..|+|..+.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~~g 78 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPLRG 78 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCBTT
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34567889999999999999999999999999999999754 8999999999999999999999987765
No 146
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=104.96 Aligned_cols=66 Identities=32% Similarity=0.576 Sum_probs=61.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...+.++|||+|||.++++++|+++|++||.|.+++++ +|||||+|.+.++|.+|+..+|+..+.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g 69 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKLHG 69 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 34578999999999999999999999999999999997 6899999999999999999999987765
No 147
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.37 E-value=2.9e-13 Score=110.68 Aligned_cols=71 Identities=25% Similarity=0.471 Sum_probs=63.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHH----HHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFK----EHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~----~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
+..+.++|||+|||.++++++|+ ++|++||.|.++++.+ +|.++|||||+|.+.++|.+|+..+||..+.|
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPFYD 78 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 34578999999999999999999 9999999999998863 67889999999999999999999999987765
No 148
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.37 E-value=1.5e-12 Score=108.94 Aligned_cols=64 Identities=14% Similarity=0.209 Sum_probs=58.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCc
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 96 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~ 96 (451)
...+.++|||+|||.++++++|+++|++||.|.++.++++ ||||||+|.+.++|.+|+..+++.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~ 74 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADV 74 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccC
Confidence 3456789999999999999999999999999999998753 899999999999999999988754
No 149
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.8e-12 Score=106.16 Aligned_cols=67 Identities=19% Similarity=0.292 Sum_probs=61.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 99 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~ 99 (451)
...+.++|||+|||.++++++|+++|++||.|.++.+.++ +|||||+|.+.++|.+|+..||+..+.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~ 79 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPLG 79 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEeC
Confidence 3456789999999999999999999999999999999754 789999999999999999999998776
No 150
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.36 E-value=1.5e-12 Score=109.03 Aligned_cols=66 Identities=20% Similarity=0.449 Sum_probs=61.6
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....++|||+|||.++++++|+++|++||.|.+++++.+ |||||+|.+.++|++|++.||+..+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~g 77 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRS 77 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCccC
Confidence 456789999999999999999999999999999999875 899999999999999999999987766
No 151
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.05 E-value=5.7e-14 Score=119.17 Aligned_cols=72 Identities=28% Similarity=0.387 Sum_probs=67.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEE--------EEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIID--------AQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYK 99 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~--------i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~ 99 (451)
..+.++|||+|||.++++++|+++|++||.|.+ +++++++ +|+++|||||+|.+.++|.+|+..|||..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 457789999999999999999999999999999 8999986 8999999999999999999999999998777
Q ss_pred C
Q psy300 100 G 100 (451)
Q Consensus 100 G 100 (451)
|
T Consensus 84 g 84 (116)
T 2lcw_A 84 G 84 (116)
Confidence 6
No 152
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.36 E-value=1.2e-12 Score=107.86 Aligned_cols=67 Identities=28% Similarity=0.504 Sum_probs=62.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....++|||+|||.++++++|+++|++||.|.++++. +++|||||+|.+.++|.+|+..+||..+.|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 90 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----PEKGCCFIKYDTHEQAAVCIVALANFPFQG 90 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----cCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 4457899999999999999999999999999999997 468999999999999999999999988876
No 153
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.36 E-value=1.5e-13 Score=113.40 Aligned_cols=70 Identities=20% Similarity=0.190 Sum_probs=63.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....++|||+|||.++++++|+++|++||.|.+ .++++. +|+++|||||+|.+.++|.+|++ +||..+.|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g 84 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG 84 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC
Confidence 446789999999999999999999999999888 566665 89999999999999999999998 99988776
No 154
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.36 E-value=1.9e-12 Score=106.85 Aligned_cols=71 Identities=27% Similarity=0.398 Sum_probs=63.5
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....+.++|||+|||.++++++|+++|+.|+ +++++++. +++++|||||+|.+.++|.+|+..||+..+.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 81 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG 81 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3455789999999999999999999999874 67888886 89999999999999999999999999987654
No 155
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=2e-12 Score=107.70 Aligned_cols=69 Identities=22% Similarity=0.288 Sum_probs=59.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcC--CccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN--KKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~ln--g~~f~G 100 (451)
....+.++|||+|||.++++++|+++|++||.|.++.++++ ||||||+|.+.++|.+|+..++ +..+.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G 80 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYSAVTPHLRN 80 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHSCCEETT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 34457789999999999999999999999999999998864 8999999999999999999764 333444
No 156
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.35 E-value=3.4e-12 Score=113.03 Aligned_cols=75 Identities=16% Similarity=0.423 Sum_probs=69.4
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
....+.++|||+|||.++++++|+++|++||.|.+++++++. +|.++|||||+|.+.++|.+|+..+||..+.|+
T Consensus 82 ~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 157 (166)
T 3md3_A 82 SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 157 (166)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc
Confidence 345567899999999999999999999999999999999996 899999999999999999999999999888763
No 157
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.34 E-value=2.8e-12 Score=114.74 Aligned_cols=73 Identities=25% Similarity=0.512 Sum_probs=67.6
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....++|||+|||.++++++|+++|++||.|.+++++++.+|+++|||||+|.+.++|.+|+..|||..+.+
T Consensus 91 ~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~ 163 (175)
T 3nmr_A 91 NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTME 163 (175)
T ss_dssp SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCT
T ss_pred ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccC
Confidence 3446789999999999999999999999999999999999999999999999999999999999999976653
No 158
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=2e-12 Score=106.00 Aligned_cols=70 Identities=14% Similarity=0.224 Sum_probs=62.2
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.....++|||+|||.++++++|+++|++||.|. ++++. ++++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~---~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 84 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTW---QGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTD 84 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEc---CCCCcEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 344678999999999999999999999999996 66664 47899999999999999999999999988763
No 159
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.34 E-value=1.6e-12 Score=119.00 Aligned_cols=71 Identities=21% Similarity=0.495 Sum_probs=67.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
..++|||+|||.++++++|+++|++||.|.+|.++.+.+|.++|||||+|.+.++|.+|+..+||..+.|+
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr 157 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGR 157 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCE
Confidence 46899999999999999999999999999999999988999999999999999999999999999888763
No 160
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=1.5e-12 Score=109.85 Aligned_cols=70 Identities=24% Similarity=0.430 Sum_probs=62.0
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeE----EEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDII----DAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~----~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...+.++|||+|||.++++++|+++|++||.|. .+++. +|+++|||||+|.+.++|.+|+..|+|..+.|
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 94 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRGQAFITFPNKEIAWQALHLVNGYKLYG 94 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 345678999999999999999999999999994 44444 88999999999999999999999999987765
No 161
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=7.7e-13 Score=109.15 Aligned_cols=64 Identities=20% Similarity=0.351 Sum_probs=60.2
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
++|||+|||.++++++|+++|++||+|.+++++++ ++|||||+|.+.++|.+|+..|+|..+.|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g 64 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVICG 64 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeECC
Confidence 58999999999999999999999999999999876 78999999999999999999999987765
No 162
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.34 E-value=1.1e-12 Score=113.25 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=61.2
Q ss_pred ceEEEcCC----CCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEcc----HHH----HHHHHH--hcCCcc
Q psy300 33 GRLFIKNL----PFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYAN----KIS----AVKAIL--KSNKKP 97 (451)
Q Consensus 33 ~~lfVgnL----p~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~----~~~----A~~Al~--~lng~~ 97 (451)
++|||+|| |+.+++.+|+++|++||+|.++.++.|+ ||+|+|||||+|.+ +++ |.+|+. .++|..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 68999999 9999999999999999999999999999 99999999999996 433 788888 788888
Q ss_pred CCC
Q psy300 98 YKG 100 (451)
Q Consensus 98 f~G 100 (451)
+.|
T Consensus 83 I~G 85 (136)
T 2j8a_A 83 IMG 85 (136)
T ss_dssp ETT
T ss_pred ecC
Confidence 877
No 163
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.33 E-value=2.7e-12 Score=105.61 Aligned_cols=69 Identities=29% Similarity=0.513 Sum_probs=60.7
Q ss_pred CCCCCCCCceEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 25 KKPDKTKRGRLFIKNLPF-KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 25 ~~~~~~~~~~lfVgnLp~-~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....+..++|||+|||. ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|+..+||..+.|
T Consensus 15 ~~~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (97)
T 2xnq_A 15 VPRGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMNFG 84 (97)
T ss_dssp ----CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEETT
T ss_pred ccCCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 344566789999999998 99999999999999999999983 7999999999999999999999987766
No 164
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.33 E-value=8.8e-13 Score=111.79 Aligned_cols=70 Identities=20% Similarity=0.327 Sum_probs=63.0
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYG-DIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G-~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
....++|||+|||.++++++|+++|++|| .|..+.+.. +.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~---~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr 95 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT---RDFDGTGALEFPSEEILVEALERLNNIEFRGS 95 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS---CSSSCCEEEEESSHHHHHHHHHHTTTEEETTE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc---CCCCCEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 34678999999999999999999999999 899998853 35899999999999999999999999988773
No 165
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.33 E-value=2.6e-12 Score=105.18 Aligned_cols=66 Identities=30% Similarity=0.548 Sum_probs=59.5
Q ss_pred CCCCCceEEEcCCCC-CCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPF-KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~-~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
+..+.++|||+|||. ++++++|+++|++||.|.++++. +|||||+|.+.++|.+|+..++|..+.|
T Consensus 6 ~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g 72 (96)
T 2kvi_A 6 NIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMNFG 72 (96)
T ss_dssp ---CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSCBT
T ss_pred cCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCeeCC
Confidence 345789999999998 99999999999999999999984 7899999999999999999999987765
No 166
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1.2e-12 Score=111.18 Aligned_cols=68 Identities=21% Similarity=0.346 Sum_probs=59.7
Q ss_pred CCCCCceEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCc--cCCC
Q psy300 28 DKTKRGRLFIKNLPFK-ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK--PYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~-vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~--~f~G 100 (451)
...+.++|||+|||.+ +++++|+++|++||.|.++++++ ++|||||+|.+.++|.+|+..+++. .+.|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G 91 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----MKSQAFIEMETREDAMAMVDHCLKKALWFQG 91 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHHHSCCCSSS
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhccCCceECC
Confidence 3557889999999998 99999999999999999999974 4899999999999999999988643 3444
No 167
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=1.1e-12 Score=110.69 Aligned_cols=65 Identities=18% Similarity=0.277 Sum_probs=60.4
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..++|||+|||.++++++|+++|++||.|.+|.+++ ++|||||+|.+.++|.+|+..|||..+.|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 73 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKFHH 73 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBSSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 467999999999999999999999999999999864 58999999999999999999999987776
No 168
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=2.1e-12 Score=108.25 Aligned_cols=68 Identities=21% Similarity=0.491 Sum_probs=62.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....++|||+|||.++++++|+++|++||.|.+++++++ +|||||+|.+.++|.+|+..|+|..+.|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~~g 88 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTIEG 88 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3457789999999999999999999999999999999875 8999999999999999999999987765
No 169
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.32 E-value=9.2e-13 Score=107.53 Aligned_cols=68 Identities=32% Similarity=0.457 Sum_probs=61.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..+.++|||+|||.++++++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|+..++|..+.|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 80 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 4467899999999999999999999999988766 3488999999999999999999999999987765
No 170
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.32 E-value=4.2e-12 Score=113.56 Aligned_cols=73 Identities=26% Similarity=0.388 Sum_probs=68.4
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
....++|||+|||.++++++|+++|++||.|.++++++++ +|+++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 164 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDK 164 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCe
Confidence 3457899999999999999999999999999999999997 999999999999999999999999999888763
No 171
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.32 E-value=2.7e-12 Score=107.89 Aligned_cols=67 Identities=28% Similarity=0.615 Sum_probs=61.3
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
......++|||+|||.++++++|+++|++||.|.+++++ +|||||+|.+.++|.+|+..|||..+.|
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~~g 92 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSFAN 92 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 345678999999999999999999999999999999997 7899999999999999999999988776
No 172
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.32 E-value=2.8e-12 Score=113.60 Aligned_cols=71 Identities=18% Similarity=0.340 Sum_probs=64.9
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
......++|||+|||.++++++|+++|++||.|.+++++++ ++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 68 ~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 138 (150)
T 2i2y_A 68 DSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTLCGC 138 (150)
T ss_dssp SSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCSSSS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEECCe
Confidence 34557799999999999999999999999999999999876 689999999999999999999999888764
No 173
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=5.3e-12 Score=103.75 Aligned_cols=68 Identities=22% Similarity=0.426 Sum_probs=61.0
Q ss_pred CCCCCCCceEEEcCCCCCCCHHHHHHHhccC--CCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQY--GDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~vte~~L~~~F~~~--G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....+.++|||+|||.++++++|+++|++| |.|.++++. +|||||+|.+.++|.+|+..|||..+.|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~~g 78 (99)
T 2cpd_A 9 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVLDG 78 (99)
T ss_dssp CSCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEETT
T ss_pred ccccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 3445578999999999999999999999999 899999874 6799999999999999999999987765
No 174
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.31 E-value=5.6e-12 Score=111.70 Aligned_cols=73 Identities=32% Similarity=0.605 Sum_probs=68.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
....++|||+|||.++++++|+++|++||.|.+++++++. +|+++|||||+|.+.++|.+|+..+||..+.|+
T Consensus 85 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 158 (167)
T 1fxl_A 85 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 158 (167)
T ss_dssp GGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTC
T ss_pred cCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 4467899999999999999999999999999999999987 999999999999999999999999999988874
No 175
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.31 E-value=8e-12 Score=111.15 Aligned_cols=73 Identities=30% Similarity=0.626 Sum_probs=68.8
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....++|||+|||.++++++|+++|++||.|.+++++++. +|+++|||||+|.+.++|.+|+..+||..+.|
T Consensus 85 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 158 (168)
T 1b7f_A 85 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEG 158 (168)
T ss_dssp STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT
T ss_pred ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecC
Confidence 34567899999999999999999999999999999999998 99999999999999999999999999998876
No 176
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.31 E-value=1.9e-12 Score=109.93 Aligned_cols=66 Identities=20% Similarity=0.439 Sum_probs=59.9
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
...++|||+|||.++++++|+++|++||.|.++.++.+ |||||+|.+.++|.+|++.||+..+.|+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~~gr 79 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKFRSH 79 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBCCCT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 45789999999999999999999999999999999765 8999999999999999999999988873
No 177
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=1.6e-12 Score=110.66 Aligned_cols=66 Identities=14% Similarity=0.115 Sum_probs=59.3
Q ss_pred CCCCCceEEE--cCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccC
Q psy300 28 DKTKRGRLFI--KNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 98 (451)
Q Consensus 28 ~~~~~~~lfV--gnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f 98 (451)
...+.++||| +||+.++++++|+++|++||.|.++.++. +||||||+|.+.++|.+|+..|||+.+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----~rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----TCSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 3446789999 77999999999999999999999998863 379999999999999999999999865
No 178
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.30 E-value=7.9e-12 Score=115.93 Aligned_cols=71 Identities=27% Similarity=0.502 Sum_probs=67.2
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...++|||+|||.++++++|+++|++||.|.+++++++. +|+++|||||+|.+.++|.+|+..|||..+.|
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g 194 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG 194 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS
T ss_pred CCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC
Confidence 356899999999999999999999999999999999997 99999999999999999999999999988766
No 179
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=9.4e-12 Score=101.37 Aligned_cols=67 Identities=10% Similarity=0.285 Sum_probs=59.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
....++|||+|||.++++++|+++|++||.|.+| +.+. +|+ ||||+|.+.++|.+|+. ++|..+.|+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~ 72 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGH 72 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTE
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCE
Confidence 3467899999999999999999999999999987 4454 555 99999999999999999 999888773
No 180
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.30 E-value=5.2e-12 Score=102.42 Aligned_cols=67 Identities=22% Similarity=0.480 Sum_probs=60.7
Q ss_pred CCCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 27 ~~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
......++|||+|||.++++++|+++|++||.|.+++++ ++||||+|.+.++|.+|+..||+..+.|
T Consensus 5 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g 71 (92)
T 2dgt_A 5 SSGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------KDYAFVHMERAEDAVEAIRGLDNTEFQG 71 (92)
T ss_dssp CCCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------SSEEEEEESCHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 345578999999999999999999999999999999997 4499999999999999999999987654
No 181
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.29 E-value=4.7e-12 Score=106.21 Aligned_cols=65 Identities=29% Similarity=0.547 Sum_probs=59.8
Q ss_pred CCCCceEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFK-ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~-vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....++|||+|||.+ +++++|+++|++||.|.++.+ ++|||||+|.+.++|.+|+..|++..+.|
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~~g 89 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVLAG 89 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEETT
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 345689999999999 999999999999999999998 58999999999999999999999987765
No 182
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.29 E-value=6.2e-12 Score=130.79 Aligned_cols=72 Identities=24% Similarity=0.448 Sum_probs=67.7
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..+.++|||+|||.++|+++|.++|++||.|.+|.|+.+. +|.++|||||+|.+.++|.+||..|||..|.|
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g 171 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG 171 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC
Confidence 3456899999999999999999999999999999999997 99999999999999999999999999988776
No 183
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.28 E-value=2e-12 Score=113.56 Aligned_cols=73 Identities=29% Similarity=0.473 Sum_probs=62.9
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEE------EEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDA------QLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i------~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...+.++|||+|||.++++++|+++|++||.|.++ .+....+|+++|||||+|.+.++|.+|+..|||..+.|
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g 119 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG 119 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC
Confidence 35578899999999999999999999999998774 12112379999999999999999999999999987765
No 184
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=5.2e-12 Score=101.99 Aligned_cols=66 Identities=24% Similarity=0.435 Sum_probs=60.3
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...+.++|||+|||.++++++|+++|++||.|.+++++ ++||||+|.+.++|.+|+..|||..+.|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g 70 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------KDYAFVHMEKEADAKAAIAQLNGKEVKG 70 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESCHHHHHHHHHHHTTCEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 34578899999999999999999999999999999997 4499999999999999999999987765
No 185
>1e9g_A Ppase, inorganic pyrophosphatase; pyrophosphate phosphohydrolase, hydrolase, manganese; HET: PO4; 1.15A {Saccharomyces cerevisiae} SCOP: b.40.5.1 PDB: 1e6a_A* 1wgi_A 1wgj_A 2ihp_A* 8prk_A 2ik6_A 2ik2_A 2ik4_A 117e_A 2ik1_A* 2ik9_A 2ik0_A 2ik7_A 1m38_A 1ypp_A 1huk_A 1huj_A 1pyp_A
Probab=99.28 E-value=1.4e-12 Score=126.55 Aligned_cols=45 Identities=53% Similarity=0.994 Sum_probs=41.6
Q ss_pred CCCccCCccCCCccccCCCCEEEEEEeecCCCccceeeeccccce
Q psy300 381 ENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGNAMEMR 425 (451)
Q Consensus 381 ~~~~~s~~hd~~l~~~~~~~~~~~~~e~p~~~~~k~e~~~~~~~~ 425 (451)
+|+++||||||||+++....+|||||||||||++||||.+++++|
T Consensus 22 ~g~~~sp~hdIp~~~~~~~~~~nvVIEIP~gs~~KyEidk~~~~n 66 (286)
T 1e9g_A 22 DGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLN 66 (286)
T ss_dssp TTEEECTTTTSCSEEETTTTEEEEEEEECTTCCBCEEECTTSTTC
T ss_pred CCeecCchhhCCCCCCCCCCEEEEEEEECCCCCeEEEEccCCCCC
Confidence 488999999999998876689999999999999999999999874
No 186
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.27 E-value=4.8e-12 Score=101.11 Aligned_cols=66 Identities=24% Similarity=0.516 Sum_probs=60.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccC----C-------CeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQY----G-------DIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 98 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~----G-------~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f 98 (451)
.+.++|||+|||.++++++|+++|++| | .|.++++.++ +|||||+|.+.++|.+|+ .+||..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 467899999999999999999999999 8 9999998754 899999999999999999 9999988
Q ss_pred CCC
Q psy300 99 KGK 101 (451)
Q Consensus 99 ~G~ 101 (451)
.|+
T Consensus 78 ~g~ 80 (87)
T 2hzc_A 78 QGQ 80 (87)
T ss_dssp TTE
T ss_pred CCe
Confidence 773
No 187
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.27 E-value=6.1e-12 Score=104.24 Aligned_cols=66 Identities=33% Similarity=0.521 Sum_probs=60.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...+.++|||+|||.++++++|+++|++||.|.+++++ +|||||+|.+.++|.+|+..||+..+.|
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~~g 72 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDLEG 72 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCccCC
Confidence 34567899999999999999999999999999999986 5699999999999999999999987655
No 188
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=6.4e-12 Score=102.47 Aligned_cols=71 Identities=20% Similarity=0.235 Sum_probs=61.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEE-EeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQ-LLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~-l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.....++|||+|||.++++++|+++|++||.|.+++ ++.++ ..|.|||+|.+.++|.+|+..|||..+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~ 82 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---ETAVVNVTYSSKDQARQALDKLNGFQLENF 82 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---SSEEEEEEESSHHHHHHHHHHHTTCBCSSC
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 445678999999999999999999999999999995 77764 123399999999999999999999888763
No 189
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.27 E-value=1.1e-11 Score=115.00 Aligned_cols=68 Identities=24% Similarity=0.413 Sum_probs=62.8
Q ss_pred CceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 32 ~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.++|||+|||.++++++|+++|++||+|.+|+++++.+|+++|||||+|.+.++|.+|+..++. .+.|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~-~~~G 176 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ-KYKE 176 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC-EETT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC-eECC
Confidence 5899999999999999999999999999999999998999999999999999999999987653 5555
No 190
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.26 E-value=4.4e-12 Score=102.16 Aligned_cols=65 Identities=22% Similarity=0.332 Sum_probs=60.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...++|||+|||.++++++|+++|++| .|.++++. +++|||||+|.+.++|.+|+..+||..+.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 67 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG 67 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 467899999999999999999999999 99999884 679999999999999999999999987776
No 191
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.26 E-value=7e-12 Score=101.62 Aligned_cols=57 Identities=23% Similarity=0.507 Sum_probs=50.1
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHH
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVK 88 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~ 88 (451)
...+.++|||+|||.++++++|+++|++||.|.+++++++ ++|||||+|.+.++|.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS 63 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH
Confidence 4557889999999999999999999999999999999874 79999999999999873
No 192
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=1.7e-11 Score=100.45 Aligned_cols=66 Identities=23% Similarity=0.419 Sum_probs=59.5
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...+.++|||+|| ++++++|+++|++||.|.++.+. +++|||||+|.+.++|.+|+..|++..+.|
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g 76 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVES 76 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEETT
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeECC
Confidence 3446789999996 99999999999999999999984 568999999999999999999999987765
No 193
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=4e-12 Score=103.20 Aligned_cols=66 Identities=24% Similarity=0.438 Sum_probs=58.3
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCC-eEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCC-ccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGD-IIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK-KPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~-I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng-~~f~G 100 (451)
....++|||+|||.++++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..+|| ..+.|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 72 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVELHG 72 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEETT
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeECC
Confidence 457789999999999999999999999999 6666653 589999999999999999999999 66655
No 194
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.25 E-value=1.4e-11 Score=112.72 Aligned_cols=71 Identities=25% Similarity=0.398 Sum_probs=67.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...++|||+|||.++++++|+++|++||.|.++++++++ +|.++|||||+|.+.++|.+|+..|||..+.|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 183 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 183 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 567899999999999999999999999999999999997 99999999999999999999999999987765
No 195
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.25 E-value=1.7e-11 Score=111.92 Aligned_cols=70 Identities=20% Similarity=0.454 Sum_probs=64.0
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...++|||+|||.++++++|+++|++||.|.+++++++. +|.++|||||+|.+.++|.+|+.. ++..+.|
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G 172 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG 172 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETT
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECC
Confidence 356899999999999999999999999999999999997 899999999999999999999986 6766655
No 196
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.25 E-value=7e-12 Score=111.57 Aligned_cols=70 Identities=30% Similarity=0.607 Sum_probs=65.3
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
..++|||+|||.++++++|+++|++||.|.+++++++. +|.++|||||+|.+.++|.+|++ +++..+.|+
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~ 156 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDR 156 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSS
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCe
Confidence 46799999999999999999999999999999999987 89999999999999999999998 788877764
No 197
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.24 E-value=1.3e-11 Score=115.60 Aligned_cols=69 Identities=28% Similarity=0.508 Sum_probs=64.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
..++|||+|||.++++++|+++|++||.|.+++++++. +.++|||||+|.+.++|.+|++.|||..+.|
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g 170 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLLND 170 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-CCCceEEEEEeCCHHHHHHHHHHhCCCEECC
Confidence 45799999999999999999999999999999999985 4489999999999999999999999987776
No 198
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.23 E-value=2.2e-11 Score=109.95 Aligned_cols=69 Identities=17% Similarity=0.324 Sum_probs=62.1
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....+|||+||++++++++|+++|++||.|.+|++... +++|||||+|.+.++|.+|++.|||..+.|
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g 111 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIYN 111 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSSS
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 345578999999999999999999999999999999754 368999999999999999999999998865
No 199
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.22 E-value=3.1e-11 Score=101.11 Aligned_cols=72 Identities=19% Similarity=0.270 Sum_probs=64.0
Q ss_pred CCCceEEEcCCCC-----CCCHHHHHHHhccCCCeEEEEEeECC--CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 30 TKRGRLFIKNLPF-----KITEEEFKEHFGQYGDIIDAQLLKNA--DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 30 ~~~~~lfVgnLp~-----~vte~~L~~~F~~~G~I~~i~l~~d~--tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.+++.|+|+||.. +-++++|++.|++||.|.++.+++++ +++++|||||+|.+.++|.+|+..|||+.|.|+
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 4678999999962 23789999999999999999999986 478999999999999999999999999999885
No 200
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=5.4e-11 Score=102.70 Aligned_cols=63 Identities=19% Similarity=0.208 Sum_probs=57.4
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeE-EEEEEccHHHHHHHHHhcCCccCCC
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~-aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
-.|||+||++.+++++|+++|++||.|.+|++... .|| |||+|.+.++|.+|++.|||..+.|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~g 89 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIYA 89 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCBT
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEecC
Confidence 45789999999999999999999999999999753 286 9999999999999999999998875
No 201
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.20 E-value=2.8e-11 Score=105.21 Aligned_cols=67 Identities=18% Similarity=0.348 Sum_probs=60.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeE-EEEEEccHHHHHHHHHhcCCccCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~-aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
...-+|||+||++.+|+++|+++|++||.|.+|++... ++|+ |||+|.+.++|.+|++.|||..+.|
T Consensus 26 s~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g 93 (130)
T 3zzy_A 26 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYN 93 (130)
T ss_dssp CSEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEET
T ss_pred CceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeecC
Confidence 45568999999999999999999999999999998764 3677 9999999999999999999987765
No 202
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=1.7e-11 Score=98.49 Aligned_cols=56 Identities=27% Similarity=0.532 Sum_probs=51.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHH
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~A 89 (451)
.+.++|||+|||.++++++|+++|++||.|.+++++++ ++|||||+|.+.++|++|
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHH
Confidence 46789999999999999999999999999999999764 789999999999998754
No 203
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.16 E-value=7.7e-11 Score=96.30 Aligned_cols=63 Identities=17% Similarity=0.308 Sum_probs=54.8
Q ss_pred CCCce-EEEcCCCCCCCHHH----HHHHhccC-CCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 30 TKRGR-LFIKNLPFKITEEE----FKEHFGQY-GDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 30 ~~~~~-lfVgnLp~~vte~~----L~~~F~~~-G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
+++.+ |||+|||.++++++ |+++|++| |+|.+| +| |+|||.|.+.++|.+|++.|+|..+.|+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr 74 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFGN 74 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSSS
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCCc
Confidence 34555 99999999999988 55899999 599988 34 9999999999999999999999887764
No 204
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.16 E-value=5.3e-11 Score=105.29 Aligned_cols=83 Identities=22% Similarity=0.361 Sum_probs=71.8
Q ss_pred CCceeEEEEEEccHHHHHHHHHhc-CCcc--------------------------------------CCC----CCcHHH
Q psy300 70 GKLKGCGFINYANKISAVKAILKS-NKKP--------------------------------------YKG----KITEEE 106 (451)
Q Consensus 70 g~skG~aFV~F~~~~~A~~Al~~l-ng~~--------------------------------------f~G----~~tee~ 106 (451)
..-+|+++++|.+.++|++|+..+ ||.. |.| .+|+++
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCCEEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCCceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 456899999999999999999888 4332 222 479999
Q ss_pred HHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 107 FKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 107 L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
|+++|++||.|.++.++++ ++|||||+|.+.++|.+|+..+|+..+
T Consensus 90 l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~ 135 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN----PPGFAFVEFEDPRDAADAVRELDGRTL 135 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS----SCSEEEEEESSHHHHHHHHHHHSSSCS
T ss_pred HHHHHHhhCCEEEEEEeeC----CCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 9999999999999999886 589999999999999999999988664
No 205
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.16 E-value=2.5e-11 Score=113.52 Aligned_cols=71 Identities=20% Similarity=0.292 Sum_probs=64.4
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCCCe--EEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDI--IDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G~I--~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
.+.++|||+|||.++++++|+++|++||.| .+++++.+. +.++|+|||+|.+.++|.+|+..|||..+.|+
T Consensus 121 ~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~ 193 (205)
T 3tyt_A 121 HPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-SERSSSGLLEWDSKSDALETLGFLNHYQMKNP 193 (205)
T ss_dssp CCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-SSSSEEEEEECSSHHHHHHHHHHHTTCEECCS
T ss_pred CCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-CCCceEEEEEeCCHHHHHHHHHHhCCCCccCC
Confidence 356789999999999999999999999999 899998775 55679999999999999999999999988774
No 206
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.14 E-value=7.3e-11 Score=101.22 Aligned_cols=66 Identities=23% Similarity=0.419 Sum_probs=59.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.....++|||+|| ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|.+|+..|||..+.|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g 100 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQVES 100 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3456789999996 79999999999999999999985 568999999999999999999999987766
No 207
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.11 E-value=1.1e-10 Score=112.57 Aligned_cols=66 Identities=27% Similarity=0.473 Sum_probs=62.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCc
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 96 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~ 96 (451)
+.++|||+|||.++++++|+++|++||.|.+++++++.+|+++|||||+|.+.++|.+|+..+|+.
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~ 160 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDG 160 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHS
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCC
Confidence 567999999999999999999999999999999999999999999999999999999999999544
No 208
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.10 E-value=8.8e-11 Score=105.45 Aligned_cols=68 Identities=32% Similarity=0.457 Sum_probs=61.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....++|||+|||.++++++|+++|++||.|..+ ..+|.++|||||+|.+.++|.+|+..|||..+.|
T Consensus 96 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 163 (175)
T 1fje_B 96 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 163 (175)
T ss_dssp TGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT
T ss_pred cccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 3467899999999999999999999999988766 5589999999999999999999999999987776
No 209
>3q46_A TT-ippase; inorganic pyrophosphatase, hydrolase; HET: EPE; 0.99A {Thermococcus thioreducens} SCOP: b.40.5.1 PDB: 3r6e_A* 3q3l_A 3i98_A 3q4w_A 3q9m_A* 3r5u_A 3r5v_A* 3q5v_A* 1ude_A 1twl_A
Probab=99.08 E-value=4.5e-11 Score=108.73 Aligned_cols=52 Identities=25% Similarity=0.409 Sum_probs=41.4
Q ss_pred cCCccCCCccccCCCCEEEEEEeecCCCccceeeeccccceEEEEEeeCCCCchh
Q psy300 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGNAMEMRLYLVCFNLPSPLGY 439 (451)
Q Consensus 385 ~s~~hd~~l~~~~~~~~~~~~~e~p~~~~~k~e~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
+|||||||+..+ ...+|||||||||||++|+|+.++... ..+--+|.++.+|
T Consensus 1 ~spwhdi~~g~~-~p~~~nvvIEIP~gs~~KyE~dk~~g~--i~~DR~l~~~~~Y 52 (178)
T 3q46_A 1 MNPFHELEPGPE-VPEVVYALIEIPKGSRNKYELDKATGL--LKLDRVLYSPFFY 52 (178)
T ss_dssp CCTTTTSCSCSB-TTTBCCCEEEECTTCCEEEEECTTTSC--EEEEEECSSSCCC
T ss_pred CCccccCCCCCC-CCCEEEEEEEECCCCCeeEEECCCCCC--EEEeecccCCCCC
Confidence 599999999765 478999999999999999999998653 3333456666665
No 210
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.07 E-value=1.5e-10 Score=110.90 Aligned_cols=65 Identities=20% Similarity=0.374 Sum_probs=60.6
Q ss_pred CCCCceEEEcCCCCCC---------CHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccC
Q psy300 29 KTKRGRLFIKNLPFKI---------TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 98 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~v---------te~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f 98 (451)
....++|||+|||.++ ++++|+++|++||+|.+|+++. ++|||||+|.+.++|+.|+..|+|..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----SKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----GGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 4568899999999998 7999999999999999999985 489999999999999999999999888
No 211
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.05 E-value=4.6e-11 Score=99.86 Aligned_cols=65 Identities=22% Similarity=0.489 Sum_probs=57.9
Q ss_pred EcCCCCCCCHHHHHHHh------------ccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 37 IKNLPFKITEEEFKEHF------------GQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 37 VgnLp~~vte~~L~~~F------------~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
+.|||.++++++|++.| ++||+|.+++++++.+++++|||||+|.+.++|.+|+..|||+.|.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr 96 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQ 96 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCE
Confidence 56777778888777666 999999999999988889999999999999999999999999998875
No 212
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=99.04 E-value=1.8e-10 Score=104.46 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=42.3
Q ss_pred CCccCCCccccCCCCEEEEEEeecCCCccceeeeccccceEEEEEeeCCCCchh
Q psy300 386 SPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGNAMEMRLYLVCFNLPSPLGY 439 (451)
Q Consensus 386 s~~hd~~l~~~~~~~~~~~~~e~p~~~~~k~e~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
|||||||+..+. ...|||||||||||++|||+.++. +...+-..|.+++.|
T Consensus 1 ~~~h~ip~~~~~-p~~~nvvIEIP~gs~~KyE~dk~~--g~i~~DR~l~~~~~Y 51 (174)
T 2prd_A 1 ANLKSLPVGDKA-PEVVHMVIEVPRGSGNKYEYDPDL--GAIKLDRVLPGAQFY 51 (174)
T ss_dssp CCGGGSCCCTTT-TTEEEEEEEECTTCCEEEEEETTT--TEEEEEEECSSSCCC
T ss_pred CCcccCCCCCCC-CCEEEEEEEecCCCCeEEEEecCC--CCEEEeeecCCCCcC
Confidence 899999998775 589999999999999999999875 344455667777665
No 213
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.01 E-value=3.1e-10 Score=114.13 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=61.3
Q ss_pred CCCCCCCceEEEcC--CCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC
Q psy300 26 KPDKTKRGRLFIKN--LPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 99 (451)
Q Consensus 26 ~~~~~~~~~lfVgn--Lp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~ 99 (451)
+....++.+|||+| |+.++|+++|+++|++||.|.++.+.+ +||||||+|.+.++|++|++.|||+.+.
T Consensus 12 ~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~ 82 (345)
T 3tht_A 12 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVV 82 (345)
T ss_dssp CCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEE
T ss_pred eecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCccc
Confidence 44466889999999 588999999999999999999987753 5899999999999999999999998774
No 214
>3fq3_A Inorganic pyrophosphatase:bacterial/archaeal INOR pyrophosphatase; ssgcid, inorganic phosphatase; 1.90A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3sw5_A
Probab=99.00 E-value=2.8e-10 Score=104.67 Aligned_cols=58 Identities=21% Similarity=0.227 Sum_probs=42.1
Q ss_pred CCCCCccCCccCCCccccCCCCEEEEEEeecC-CCccceeeeccccceEEEEEeeCCCCchh
Q psy300 379 GSENGLISPFHDIPLYSNVKDKIFNMVVEIPR-WTNAKMEVGNAMEMRLYLVCFNLPSPLGY 439 (451)
Q Consensus 379 ~~~~~~~s~~hd~~l~~~~~~~~~~~~~e~p~-~~~~k~e~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
..+|++||+|||||+..+ ..++||||||||| ||++|+|+.++. +...+--.|.++++|
T Consensus 15 ~~~g~~im~~~~ip~g~~-~p~~vnvvIEIP~g~s~~KyE~dk~~--g~i~~DR~l~~~~~Y 73 (197)
T 3fq3_A 15 QTQGPGSMNIDAISIGSN-PPEDVNVIIEVPVGGQPIKYEMDKKA--GALIVDRFLYTPMTY 73 (197)
T ss_dssp -------CCGGGSCSCSS-TTSCEEEEEEECTTCCSEEEEEETTT--TEEEEEEECCSSBCC
T ss_pred ccCCCCcCCHHHCCCCCC-CCCEEEEEEEecCCCCCEeEEEecCC--CCEEEEeecCCCCcC
Confidence 356899999999999876 3689999999998 799999999875 555555566677666
No 215
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.00 E-value=8e-10 Score=107.16 Aligned_cols=69 Identities=19% Similarity=0.276 Sum_probs=62.7
Q ss_pred CCCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC-C
Q psy300 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK-G 100 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~-G 100 (451)
.....++|||+|||.++++++|+++|++||.|.+++++.++ +|||||+|.+.++|.+|+..|||..+. |
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~----~g~afV~f~~~~~A~~A~~~l~g~~~~~g 272 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR----HDIAFVEFDNEVQAGAARDALQGFKITQN 272 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC----CcEEEEEeCCHHHHHHHHHHcCCcEeCCC
Confidence 34467899999999999999999999999999999998653 589999999999999999999998877 5
No 216
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.00 E-value=4.9e-10 Score=92.53 Aligned_cols=56 Identities=29% Similarity=0.534 Sum_probs=52.4
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.|.++.++++ .+|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 30 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 86 (99)
T 4fxv_A 30 NMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRL 86 (99)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEE
Confidence 5899999999999999999999998 5689999999999999999999999998765
No 217
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.99 E-value=3e-10 Score=99.14 Aligned_cols=82 Identities=12% Similarity=0.221 Sum_probs=51.7
Q ss_pred EEEEEEccHHHHHHHHHhcCCccCCC--------------------------CCcHHHHHHHhcccCcceeeEEeeC-CC
Q psy300 75 CGFINYANKISAVKAILKSNKKPYKG--------------------------KITEEEFKEHFGQYGDIIDAQLLKN-AD 127 (451)
Q Consensus 75 ~aFV~F~~~~~A~~Al~~lng~~f~G--------------------------~~tee~L~~~F~~fG~V~~v~v~~d-~~ 127 (451)
+.|.+|.+...+..|+..++|..-.| .+|+++|+++|++||.|..+.++.+ .+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~~~~~~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~ 85 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSMSYGRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYT 85 (135)
T ss_dssp -----------------------------CCSCCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSS
T ss_pred cccccccCCCchhhhhhhccCCCCCCCCCCCcCCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCC
Confidence 56777888888888888877643222 4799999999999999999999987 47
Q ss_pred CCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 128 GKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 128 g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++++|||||+|.+.++|.+|+..+|+..+
T Consensus 86 g~~~G~afV~F~~~~~A~~Ai~~l~g~~i 114 (135)
T 2lea_A 86 KESRGFAFVRFHDKRDAEDAMDAMDGAVL 114 (135)
T ss_dssp SSCCSCCEEECSCHHHHHHHHTTTTTCCS
T ss_pred CccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 89999999999999999999999988764
No 218
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=1.4e-09 Score=91.56 Aligned_cols=70 Identities=16% Similarity=0.260 Sum_probs=59.0
Q ss_pred CCCCCceEEEcCCCCCCC-----------HHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCc
Q psy300 28 DKTKRGRLFIKNLPFKIT-----------EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 96 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~vt-----------e~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~ 96 (451)
...+.++|+|+||..... +++|+++|++||.|.++.+ .+. .++|||||+|.+.++|.+|+..|||.
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~ 87 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGR 87 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTC
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCC
Confidence 445788999999944332 5899999999999999966 443 48999999999999999999999998
Q ss_pred cCCC
Q psy300 97 PYKG 100 (451)
Q Consensus 97 ~f~G 100 (451)
.|.|
T Consensus 88 ~~~g 91 (112)
T 2dit_A 88 WFGG 91 (112)
T ss_dssp EETT
T ss_pred EECC
Confidence 7765
No 219
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.97 E-value=4.9e-10 Score=93.73 Aligned_cols=72 Identities=15% Similarity=0.289 Sum_probs=62.3
Q ss_pred CCCceEEEcCC--CCCCC--------HHHHHHHhccCCCeEEEEEeECCC---CCceeEEEEEEccHHHHHHHHHhcCCc
Q psy300 30 TKRGRLFIKNL--PFKIT--------EEEFKEHFGQYGDIIDAQLLKNAD---GKLKGCGFINYANKISAVKAILKSNKK 96 (451)
Q Consensus 30 ~~~~~lfVgnL--p~~vt--------e~~L~~~F~~~G~I~~i~l~~d~t---g~skG~aFV~F~~~~~A~~Al~~lng~ 96 (451)
.+++.|.+.|+ |.++. +++|++.|++||+|.+++++++.. ++++|+|||+|.+.++|.+|+..|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 46788999998 44443 368999999999999999998863 468999999999999999999999999
Q ss_pred cCCCC
Q psy300 97 PYKGK 101 (451)
Q Consensus 97 ~f~G~ 101 (451)
.|.|+
T Consensus 83 ~f~GR 87 (105)
T 3v4m_A 83 KFANR 87 (105)
T ss_dssp EETTE
T ss_pred EeCCC
Confidence 99885
No 220
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=98.97 E-value=7.4e-10 Score=93.30 Aligned_cols=56 Identities=14% Similarity=0.263 Sum_probs=52.3
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++++++|+++|++||.|.++.+++|+ +++++|||||+|.+.++|.+|+..+|++.+
T Consensus 17 ~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~ 73 (110)
T 3s8s_A 17 NVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSV 73 (110)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 58999999999999999999999984 699999999999999999999999998765
No 221
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=8.9e-10 Score=91.75 Aligned_cols=61 Identities=21% Similarity=0.356 Sum_probs=53.5
Q ss_pred CccCCC----CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 95 KKPYKG----KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++|.| .+|+++|+++|++||.|.++.+++++.|.++|||||+|.+.++|.+|+. +++..+
T Consensus 12 ~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~ 76 (103)
T 1s79_A 12 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKY 76 (103)
T ss_dssp GCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCC
T ss_pred CEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEE
Confidence 345554 5899999999999999999999998779999999999999999999998 776554
No 222
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.94 E-value=1.2e-09 Score=100.28 Aligned_cols=67 Identities=18% Similarity=0.325 Sum_probs=61.6
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC-C
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYG-DIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK-G 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G-~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~-G 100 (451)
.+.++|||+|||.++++++|+++|++|| .|.+++++.+ ++|+|||+|.+.++|.+|+..+||..+. |
T Consensus 118 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g 186 (198)
T 1qm9_A 118 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGEN 186 (198)
T ss_dssp CCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----TSSCEEEECSSHHHHHHHHHHHTSSCCSSC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----CCcEEEEEeCCHHHHHHHHHHhcCCccCCC
Confidence 4578999999999999999999999999 9999999754 3799999999999999999999999887 5
No 223
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.92 E-value=1.2e-09 Score=88.09 Aligned_cols=56 Identities=25% Similarity=0.420 Sum_probs=51.5
Q ss_pred CCcHHHHHHHhcccC--cceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYG--DIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG--~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++|| .|.++.++.+ .+|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 12 ~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~ 70 (90)
T 3p5t_L 12 WTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL 70 (90)
T ss_dssp TCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCS
T ss_pred CCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCee
Confidence 579999999999999 9999999998 5899999999999999999999999998765
No 224
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.91 E-value=2e-09 Score=91.95 Aligned_cols=71 Identities=20% Similarity=0.333 Sum_probs=62.2
Q ss_pred CCceEEEcCCC--CCC---CHHHHHHHhccCCCeEEEEEeECC-----CCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 31 KRGRLFIKNLP--FKI---TEEEFKEHFGQYGDIIDAQLLKNA-----DGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 31 ~~~~lfVgnLp--~~v---te~~L~~~F~~~G~I~~i~l~~d~-----tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
+++.|+++|+- .++ -+++|++.|++||+|.+++++++. +++++|++||+|.+.++|.+|+..|||+.|.|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 67899999993 222 368999999999999999999875 35688999999999999999999999999988
Q ss_pred C
Q psy300 101 K 101 (451)
Q Consensus 101 ~ 101 (451)
+
T Consensus 99 R 99 (118)
T 3ue2_A 99 R 99 (118)
T ss_dssp E
T ss_pred c
Confidence 5
No 225
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.91 E-value=2.2e-09 Score=101.43 Aligned_cols=67 Identities=18% Similarity=0.325 Sum_probs=61.3
Q ss_pred CCCceEEEcCCCCCCCHHHHHHHhccCC-CeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC-C
Q psy300 30 TKRGRLFIKNLPFKITEEEFKEHFGQYG-DIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK-G 100 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vte~~L~~~F~~~G-~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~-G 100 (451)
.+.++|||+|||.++++++|+++|++|| .|.+++++.+ ++|||||+|.+.++|.+|+..+||..+. |
T Consensus 149 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g 217 (229)
T 2adc_A 149 PPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----DRKMALIQMGSVEEAVQALIDLHNHDLGEN 217 (229)
T ss_dssp CSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS----STTCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC----CCcEEEEEECCHHHHHHHHHHHCCCccCCC
Confidence 3578999999999999999999999999 9999999653 4789999999999999999999998887 5
No 226
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.88 E-value=5.6e-10 Score=116.05 Aligned_cols=61 Identities=23% Similarity=0.422 Sum_probs=55.1
Q ss_pred ccCCC----CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 96 KPYKG----KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 96 ~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++|+| .+|+++|.++|++||.|..|.|+.+ .+|.++|||||+|.+.++|.+|+..||+..+
T Consensus 104 ~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i 169 (437)
T 3pgw_S 104 TLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKI 169 (437)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEE
Confidence 45665 4799999999999999999999988 5789999999999999999999999998765
No 227
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=98.88 E-value=1.3e-09 Score=92.09 Aligned_cols=55 Identities=24% Similarity=0.482 Sum_probs=50.4
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++|+++|+++|++||.|.+++++++. +.++|||||+|.+.++|.+|+..+++..+
T Consensus 16 ~~te~~L~~~F~~~G~v~~v~i~~d~-~~~kg~afV~f~~~~~A~~Ai~~l~~~~~ 70 (115)
T 4f25_A 16 SIDNKALYDTFSAFGNILSCKVVCDE-NGSKGYGFVHFETQEAAERAIEKMNGMLL 70 (115)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEEET-TEEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHhccCCEEEEEEeecC-CCCCceEEEEECCHHHHHHHHHHcCCCEE
Confidence 58999999999999999999999985 45899999999999999999999988654
No 228
>3ld3_A Inorganic pyrophosphatase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.75A {Anaplasma phagocytophilum} PDB: 3lo0_A
Probab=98.87 E-value=1.2e-09 Score=100.56 Aligned_cols=58 Identities=22% Similarity=0.183 Sum_probs=36.6
Q ss_pred CCCCCccCCccCCCccccCCCCEEEEEEeecCCC-ccceeeeccccceEEEEEeeCCCCchh
Q psy300 379 GSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWT-NAKMEVGNAMEMRLYLVCFNLPSPLGY 439 (451)
Q Consensus 379 ~~~~~~~s~~hd~~l~~~~~~~~~~~~~e~p~~~-~~k~e~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
..+|++|++|||||+..+ ...++|||||||||| ++|+|+.++. +...+--.|.++++|
T Consensus 15 ~~~g~~~m~~~~i~~g~~-~p~~vnvvIEIP~gs~~~KyE~dk~~--G~l~~DR~l~~~~~Y 73 (199)
T 3ld3_A 15 QTQGPGSMNLDDIGSGSN-APEEVNVVIEVSQDSHPVKYEFDEKN--GALWVDRFLPTAMYY 73 (199)
T ss_dssp -----------CCCSCTT-TTTSEEEEEEECTTCCSEEEEECTTT--CCEEEEEECSSSBCC
T ss_pred ccCCCccCChHHCCCCCC-CCCEEEEEEEecCCCCCEEEEEecCC--CCEEEEEEcCCCCcC
Confidence 467889999999999866 368999999999998 6999999876 444444456666655
No 229
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.87 E-value=8.9e-10 Score=89.39 Aligned_cols=54 Identities=17% Similarity=0.433 Sum_probs=49.3
Q ss_pred CCcHHHHHHHhcccC-cceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCC
Q psy300 101 KITEEEFKEHFGQYG-DIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKK 154 (451)
Q Consensus 101 ~~tee~L~~~F~~fG-~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~r 154 (451)
++|+++|+++|++|| .|.+++++++ .+|.++|||||+|.+.++|.+|+..+++.
T Consensus 12 ~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~ 67 (91)
T 2lxi_A 12 AATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHS 67 (91)
T ss_dssp SCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTE
T ss_pred CCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCC
Confidence 589999999999999 7999999988 56899999999999999999999887543
No 230
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.86 E-value=3.7e-09 Score=87.33 Aligned_cols=56 Identities=27% Similarity=0.504 Sum_probs=53.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.++++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 81 (105)
T 2dnh_A 26 QQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQT 81 (105)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 57999999999999999999999998899999999999999999999999998765
No 231
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.86 E-value=2.1e-09 Score=84.84 Aligned_cols=53 Identities=26% Similarity=0.442 Sum_probs=49.2
Q ss_pred cHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++++|+++|++||.|.++.++ ..+|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 20 t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 72 (81)
T 2krb_A 20 LKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 72 (81)
T ss_dssp HHHHHHHHHHTTCCEEEEECC-CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCC
T ss_pred HHHHHHHHHhhcCCeEEEEec-CCCCcEeEEEEEEECCHHHHHHHHHHhcCccc
Confidence 679999999999999999988 45789999999999999999999999998776
No 232
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.86 E-value=1.5e-09 Score=89.43 Aligned_cols=56 Identities=20% Similarity=0.317 Sum_probs=51.5
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.+++++ +|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 23 ~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~ 79 (100)
T 3ns6_A 23 PVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRL 79 (100)
T ss_dssp HHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCccc
Confidence 35789999999999999999999885 599999999999999999999999998765
No 233
>3gvf_A Inorganic pyrophosphatase; structural genomics, hydrolase, S structural genomics center for infectious disease, ssgcid; HET: PGE; 1.75A {Burkholderia pseudomallei 1710B} PDB: 3d63_A* 3eiy_A 3ej0_A* 3ej2_A* 3eiz_A*
Probab=98.85 E-value=2.1e-09 Score=98.83 Aligned_cols=58 Identities=22% Similarity=0.373 Sum_probs=39.4
Q ss_pred CCCCCccCCccCCCccccCCCCEEEEEEeecCCCc-cceeeeccccceEEEEEeeCCCCchh
Q psy300 379 GSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTN-AKMEVGNAMEMRLYLVCFNLPSPLGY 439 (451)
Q Consensus 379 ~~~~~~~s~~hd~~l~~~~~~~~~~~~~e~p~~~~-~k~e~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
..+|++|++|||||+..+. ..++||||||||||+ +|+|+.++. +...+---|.+++.|
T Consensus 15 ~~~g~~~m~~~~i~~g~~~-p~~vnvvIEIP~gs~~~KyE~dk~~--g~i~~DR~l~s~~~Y 73 (196)
T 3gvf_A 15 QTQGPGSMSFSNVPAGKDL-PQDFNVIIEIPAQSEPVKYEADKAL--GLLVVDRFIGTGMRY 73 (196)
T ss_dssp --------CGGGSCSCSBT-TTBEEEEEEECTTCCSEEEEEETTT--TEEEEEEECTTCCCC
T ss_pred cccCCCCCchhhCCCCCCC-CCEEEEEEEecCCCCceEEEEecCC--CCEEEEeEcCCCccC
Confidence 3568899999999997664 589999999999998 999999876 344444445666555
No 234
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.85 E-value=1.6e-09 Score=88.93 Aligned_cols=54 Identities=11% Similarity=0.281 Sum_probs=49.5
Q ss_pred CCcHHHHHHHhcccCc--ceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCC
Q psy300 101 KITEEEFKEHFGQYGD--IIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKK 154 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~--V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~r 154 (451)
.+|+++|+++|++||. +.++++++| .+|+++|||||+|.+.++|.+|+..+|+.
T Consensus 20 ~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 20 HTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp TCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred cCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 5899999999999995 678999988 56899999999999999999999999875
No 235
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.84 E-value=4.7e-09 Score=85.00 Aligned_cols=56 Identities=29% Similarity=0.358 Sum_probs=52.6
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+++++++|||||+|.+.++|.+|+..+|+..+
T Consensus 27 ~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (95)
T 2ywk_A 27 RVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRL 82 (95)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 58999999999999999999999998899999999999999999999999988654
No 236
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.83 E-value=3.9e-09 Score=88.24 Aligned_cols=54 Identities=22% Similarity=0.297 Sum_probs=50.4
Q ss_pred cHHHHHHHhcccCcceeeEEeeCC--CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 103 TEEEFKEHFGQYGDIIDAQLLKNA--DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~v~~d~--~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++++|++.|++||.|.++.+++++ +++++|||||+|.+.++|.+|+..|||+.|
T Consensus 26 ~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~ 81 (105)
T 2pe8_A 26 LEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYF 81 (105)
T ss_dssp CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 689999999999999999999874 368999999999999999999999999987
No 237
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=5e-09 Score=85.85 Aligned_cols=56 Identities=30% Similarity=0.479 Sum_probs=52.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+++|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 28 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 83 (100)
T 2do4_A 28 SCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTI 83 (100)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 57999999999999999999999998899999999999999999999999988654
No 238
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.83 E-value=2.6e-09 Score=89.07 Aligned_cols=54 Identities=20% Similarity=0.367 Sum_probs=49.3
Q ss_pred cHHHHHHHh-cccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 103 TEEEFKEHF-GQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 103 tee~L~~~F-~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++|++.| ++||.|.++.++++.+++++|||||+|.+.++|.+|+..+||+.+
T Consensus 39 ~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~ 93 (104)
T 1jmt_A 39 FFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWF 93 (104)
T ss_dssp HHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 446777777 999999999999988889999999999999999999999999876
No 239
>2bqx_A Inorganic pyrophosphatase; hydrolase; 1.90A {Helicobacter pylori} PDB: 1ygz_A 2bqy_A
Probab=98.82 E-value=2.3e-09 Score=97.18 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=34.7
Q ss_pred CccCCCccccCCCCEEEEEEeecCCCccceeeeccccceEEEEEeeCCCCchh
Q psy300 387 PFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGNAMEMRLYLVCFNLPSPLGY 439 (451)
Q Consensus 387 ~~hd~~l~~~~~~~~~~~~~e~p~~~~~k~e~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
+|||||+..+ ...|||||||||||++|||+.++. +...+--+|.+++.|
T Consensus 2 ~~~~ip~~~~--p~~~nvvIEIP~gs~~KyE~dk~~--g~i~~DR~l~~~~~Y 50 (173)
T 2bqx_A 2 NLEKLEVSHD--ADSLCVVIEISKHSNIKYELDKES--GALMVDRVLYGAQNY 50 (173)
T ss_dssp -----CCCEE--TTEEEEEEEECTTCSEEEEECTTT--CCEEEEEECSSSCCC
T ss_pred CcccCCCCCC--CCeEEEEEEECCCCCeEEEEecCC--CCEEEeeecCCCCcC
Confidence 7999999988 689999999999999999999874 444444456566554
No 240
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.82 E-value=6.5e-09 Score=82.64 Aligned_cols=56 Identities=36% Similarity=0.557 Sum_probs=52.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ .++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 17 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (87)
T 3bs9_A 17 EITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 73 (87)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 5899999999999999999999998 5889999999999999999999999988654
No 241
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.81 E-value=6.7e-09 Score=81.79 Aligned_cols=56 Identities=14% Similarity=0.421 Sum_probs=52.2
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ .++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 12 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~ 68 (83)
T 3md1_A 12 NVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDL 68 (83)
T ss_dssp TCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCee
Confidence 5799999999999999999999988 6789999999999999999999999988764
No 242
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.81 E-value=6e-09 Score=88.33 Aligned_cols=56 Identities=30% Similarity=0.461 Sum_probs=53.0
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+.+|.++|||||+|.+.++|.+|+..+|+..+
T Consensus 18 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~ 73 (116)
T 2fy1_A 18 ETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSL 73 (116)
T ss_dssp TCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 58999999999999999999999988999999999999999999999999998765
No 243
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=5.3e-09 Score=85.44 Aligned_cols=62 Identities=24% Similarity=0.462 Sum_probs=54.9
Q ss_pred CccCCC----CCcHHHHHHHhcccCcce-eeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 95 KKPYKG----KITEEEFKEHFGQYGDII-DAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG~V~-~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++|.| .+++++|+++|++||.|. ++.++++ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 10 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 77 (99)
T 2div_A 10 ASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPL 77 (99)
T ss_dssp SEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEE
T ss_pred cEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCcc
Confidence 344555 479999999999999999 9999998 4789999999999999999999999998765
No 244
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=8.3e-09 Score=85.05 Aligned_cols=55 Identities=16% Similarity=0.401 Sum_probs=52.4
Q ss_pred CCcHHHHHHHhcc-cCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 101 KITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 101 ~~tee~L~~~F~~-fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
.+|+++|+++|++ ||.|.++.++.+++|.++|||||+|.+.++|.+|+..+++..
T Consensus 20 ~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~ 75 (104)
T 2dhg_A 20 DVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAV 75 (104)
T ss_dssp TCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCc
Confidence 5899999999999 999999999999899999999999999999999999999866
No 245
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.80 E-value=9.7e-09 Score=83.10 Aligned_cols=56 Identities=30% Similarity=0.523 Sum_probs=51.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++++ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 16 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (95)
T 2dnz_A 16 NITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFEL 72 (95)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 5899999999999999999999988 4689999999999999999999999988654
No 246
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.80 E-value=9e-09 Score=86.37 Aligned_cols=56 Identities=21% Similarity=0.435 Sum_probs=53.2
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.++++.++|||||+|.+.++|.+|+..+|++.+
T Consensus 36 ~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 91 (114)
T 1x5o_A 36 SMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFI 91 (114)
T ss_dssp TCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 57999999999999999999999998899999999999999999999999998765
No 247
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.79 E-value=9e-09 Score=84.21 Aligned_cols=56 Identities=30% Similarity=0.363 Sum_probs=52.0
Q ss_pred CCcHHHHHHHhcccCccee--------eEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIID--------AQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~--------v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.+ +.++.+ .+|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 24 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 24 NVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 5899999999999999999 999988 5789999999999999999999999998765
No 248
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.79 E-value=6.5e-09 Score=84.90 Aligned_cols=56 Identities=23% Similarity=0.412 Sum_probs=52.2
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.++ ++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 19 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (99)
T 1whw_A 19 TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVF 75 (99)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEES
T ss_pred CCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 58999999999999999999999885 889999999999999999999999988654
No 249
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.79 E-value=5.8e-09 Score=80.71 Aligned_cols=55 Identities=24% Similarity=0.377 Sum_probs=49.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.++ +|+++|||||+|.+.++|.+|+. +++..+
T Consensus 10 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~ 65 (75)
T 2mss_A 10 NTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEI 65 (75)
T ss_dssp SCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEE
Confidence 58999999999999999999999884 78999999999999999999987 777654
No 250
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.78 E-value=7.7e-09 Score=85.68 Aligned_cols=56 Identities=21% Similarity=0.450 Sum_probs=52.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+.+|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 40 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 95 (107)
T 3ulh_A 40 GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPL 95 (107)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 58999999999999999999999998999999999999999999999999988764
No 251
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=98.78 E-value=3.9e-09 Score=95.50 Aligned_cols=49 Identities=20% Similarity=0.289 Sum_probs=41.3
Q ss_pred CccCCCccccCCCCEEEEEEeecCCCc-cceeeeccccceEEEEEeeCCCCchh
Q psy300 387 PFHDIPLYSNVKDKIFNMVVEIPRWTN-AKMEVGNAMEMRLYLVCFNLPSPLGY 439 (451)
Q Consensus 387 ~~hd~~l~~~~~~~~~~~~~e~p~~~~-~k~e~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
+|||||+..+ ...|||||||||||+ +|+|+.++. +...+-.+|.+++.|
T Consensus 3 ~~~~ip~~~~--p~~~nvvIEIP~gs~p~KyE~dk~~--g~i~~DR~l~~~~~Y 52 (173)
T 3d53_A 3 FIKKIKAKAN--NNEINVIIEIPMNSGPIKYEFDKES--GALFVDRFMQTTMSY 52 (173)
T ss_dssp CGGGSCSCSS--TTCEEEEEEECTTCCSEEEEECTTT--CCEEEEEECCSSCCC
T ss_pred chhhCCCCCC--CCeEEEEEEeCCCCCceeEEEecCC--CCEEEeeecCCCCcC
Confidence 7999999887 689999999999999 999999875 455555667777666
No 252
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.78 E-value=4.2e-09 Score=92.59 Aligned_cols=60 Identities=18% Similarity=0.282 Sum_probs=52.3
Q ss_pred CccCCC----CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 95 KKPYKG----KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++|.+ .+|+++|+++|++|| +.++.++.+++|+++|||||+|.+.++|.+|+ .+|+..+
T Consensus 47 ~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l 110 (139)
T 2hgn_A 47 HCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANM 110 (139)
T ss_dssp CCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEE
Confidence 345665 489999999999999 67999999988999999999999999999999 7777554
No 253
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=2.9e-08 Score=82.30 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=51.1
Q ss_pred CceEEEcCCC-------CCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCC
Q psy300 32 RGRLFIKNLP-------FKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 95 (451)
Q Consensus 32 ~~~lfVgnLp-------~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng 95 (451)
..+|-|.-.+ .++++++|+++|++||.|.+|+++ ++++|||||+|.+.++|.+|+..+++
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 4566666443 468999999999999999999997 47899999999999999999987554
No 254
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=9.2e-09 Score=84.69 Aligned_cols=55 Identities=27% Similarity=0.558 Sum_probs=51.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.|..+.++.+ ++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2d9p_A 26 GIDDERLRKAFSPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEMNGRIV 80 (103)
T ss_dssp TCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 5899999999999999999999998 899999999999999999999999988764
No 255
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.77 E-value=6.1e-09 Score=82.42 Aligned_cols=56 Identities=23% Similarity=0.393 Sum_probs=52.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++++ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 18 ~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 74 (85)
T 3mdf_A 18 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 74 (85)
T ss_dssp TCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5799999999999999999999887 6788999999999999999999999988764
No 256
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=1.2e-08 Score=84.39 Aligned_cols=56 Identities=29% Similarity=0.471 Sum_probs=51.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ .+|.++|||||+|.+.++|.+|+..+|+..+
T Consensus 34 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 90 (106)
T 1p27_B 34 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 90 (106)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBS
T ss_pred CCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEE
Confidence 5799999999999999999999988 5689999999999999999999999988654
No 257
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=9.3e-09 Score=84.87 Aligned_cols=56 Identities=25% Similarity=0.384 Sum_probs=52.0
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (105)
T 1x5u_A 26 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKL 82 (105)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 57999999999999999999999984 789999999999999999999999988654
No 258
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=1.1e-08 Score=85.72 Aligned_cols=56 Identities=32% Similarity=0.507 Sum_probs=52.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+++++++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 81 (114)
T 2do0_A 26 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLL 81 (114)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 58999999999999999999999998899999999999999999999999988654
No 259
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.75 E-value=9e-09 Score=83.73 Aligned_cols=56 Identities=23% Similarity=0.391 Sum_probs=51.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ .+|.++|||||+|.+.++|.+|+..+|+..+
T Consensus 13 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 69 (96)
T 2x1f_A 13 DQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQL 69 (96)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeE
Confidence 5799999999999999999999988 4689999999999999999999999988654
No 260
>2au7_A Inorganic pyrophosphatase; hydrolase, mutant; 1.05A {Escherichia coli} PDB: 1i40_A 1i6t_A 1igp_A 1obw_A 2au6_A 2au8_A 2au9_A 2auu_A 1mjy_A 1faj_A 1ino_A 1ipw_A 1jfd_A 2eip_A 1mjz_A 1mjx_A 1mjw_A 3i4q_A*
Probab=98.75 E-value=5.8e-09 Score=94.54 Aligned_cols=50 Identities=18% Similarity=0.292 Sum_probs=42.6
Q ss_pred CccCCCccccCCCCEEEEEEeecCCCc-cceeeeccccceEEEEEeeCCCCchh
Q psy300 387 PFHDIPLYSNVKDKIFNMVVEIPRWTN-AKMEVGNAMEMRLYLVCFNLPSPLGY 439 (451)
Q Consensus 387 ~~hd~~l~~~~~~~~~~~~~e~p~~~~-~k~e~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
+|||||+..+. ...|||||||||||+ +|+|+.+++ +...+-..|.+++.|
T Consensus 1 ~~~~ip~~~~~-p~~~nvvIEIP~gs~p~KyE~dk~~--g~i~~DR~l~~~~~Y 51 (175)
T 2au7_A 1 SLLNVPAGKDL-PEDIYVVIEIPANADPIKYEIDKES--GALFVDQFMSTAMFY 51 (175)
T ss_dssp CGGGCCSCSBT-TTBEEEEEEECTTCCSEEEEECTTT--CCEEEEEECSSSCCC
T ss_pred CcccCCCCCCC-CCEEEEEEEecCCCCceeEEEecCC--CCEEEeeecCCCCcC
Confidence 69999998775 589999999999999 999999987 666666777777766
No 261
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.75 E-value=1.4e-08 Score=81.07 Aligned_cols=55 Identities=24% Similarity=0.450 Sum_probs=51.0
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ .+++++|||||+|.+.++|.+|+ .+|+..+
T Consensus 17 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~ 72 (89)
T 3ucg_A 17 GATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLF 72 (89)
T ss_dssp TCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEE
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEE
Confidence 5799999999999999999999998 47899999999999999999999 9988664
No 262
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.75 E-value=4.9e-09 Score=90.62 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=52.9
Q ss_pred CccCCC----CCcHHHHHHHhcccCccee--eEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCC
Q psy300 95 KKPYKG----KITEEEFKEHFGQYGDIID--AQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKK 154 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG~V~~--v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~r 154 (451)
.++|.| .+|+++|+++|++||.|.. +++++|+ +|+++|||||+|.+. +|.+|+..+|+.
T Consensus 24 ~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~ 89 (131)
T 2m2b_A 24 DTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQAL 89 (131)
T ss_dssp CEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCC
Confidence 455666 4799999999999999977 9999986 899999999999999 999999999886
No 263
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.75 E-value=1.1e-08 Score=84.14 Aligned_cols=56 Identities=30% Similarity=0.591 Sum_probs=52.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++.+ .+|.++|||||+|.+.++|.+|+..+|+..+
T Consensus 19 ~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (104)
T 1p1t_A 19 EATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREF 75 (104)
T ss_dssp TSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSC
T ss_pred cCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCee
Confidence 5899999999999999999999988 5789999999999999999999999998765
No 264
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=5.9e-09 Score=82.71 Aligned_cols=56 Identities=21% Similarity=0.422 Sum_probs=51.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ .++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 16 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (85)
T 1x4e_A 16 GTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGV 72 (85)
T ss_dssp TCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeE
Confidence 5799999999999999999999988 5789999999999999999999999987654
No 265
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=1.5e-08 Score=82.73 Aligned_cols=55 Identities=20% Similarity=0.424 Sum_probs=50.3
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ .+++++|||||+|.+.++|.+|+. +++..+
T Consensus 21 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~ 76 (99)
T 2dgs_A 21 NCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDI 76 (99)
T ss_dssp SCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEE
Confidence 5899999999999999999999988 468899999999999999999998 877654
No 266
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.1e-08 Score=82.95 Aligned_cols=56 Identities=27% Similarity=0.468 Sum_probs=52.0
Q ss_pred CCcHHHHHHHhcccCcceee-EEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDA-QLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v-~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+ .++++ .++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 16 ~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 73 (96)
T 1x5t_A 16 EIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYL 73 (96)
T ss_dssp TCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEE
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 57999999999999999999 99988 6889999999999999999999999988654
No 267
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=1e-08 Score=84.37 Aligned_cols=56 Identities=14% Similarity=0.341 Sum_probs=51.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 24 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (103)
T 2dnm_A 24 RTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAEL 80 (103)
T ss_dssp TCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCB
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 5799999999999999999999987 4588999999999999999999999988664
No 268
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.74 E-value=1.2e-08 Score=83.84 Aligned_cols=56 Identities=25% Similarity=0.516 Sum_probs=51.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++++ .++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 23 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 1x5s_A 23 DTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSV 79 (102)
T ss_dssp TCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCT
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5899999999999999999999987 4788999999999999999999999988764
No 269
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.3e-08 Score=82.31 Aligned_cols=56 Identities=25% Similarity=0.440 Sum_probs=51.6
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++.+ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (95)
T 2cqc_A 26 YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 82 (95)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5899999999999999999999988 4588999999999999999999999988654
No 270
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.2e-08 Score=83.96 Aligned_cols=56 Identities=29% Similarity=0.482 Sum_probs=52.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++++ .++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 82 (103)
T 2cq0_A 26 DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGY 82 (103)
T ss_dssp TCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCee
Confidence 5899999999999999999999998 5789999999999999999999999988664
No 271
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.73 E-value=1.3e-08 Score=82.16 Aligned_cols=56 Identities=27% Similarity=0.478 Sum_probs=51.5
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 27 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 83 (94)
T 2e5h_A 27 SLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL 83 (94)
T ss_dssp TSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee
Confidence 5899999999999999999999987 4588999999999999999999999988654
No 272
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.73 E-value=9.2e-09 Score=87.61 Aligned_cols=61 Identities=25% Similarity=0.482 Sum_probs=53.9
Q ss_pred CccCCC----CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 95 KKPYKG----KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++|.| .+++++|+++|++||.|.++.++.+ .+|.++|||||+|.+.++|.+|+ .+|+..+
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~ 102 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVF 102 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeE
Confidence 445555 5899999999999999999999988 57899999999999999999999 8987654
No 273
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.73 E-value=1.2e-08 Score=79.07 Aligned_cols=52 Identities=23% Similarity=0.607 Sum_probs=49.0
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
.+++++|+++|++||.|.++.++++ .+|+++|||||+|.+.++|.+|+..++
T Consensus 11 ~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 11 QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp SCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 5899999999999999999999988 468999999999999999999999987
No 274
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.73 E-value=1.5e-08 Score=84.69 Aligned_cols=56 Identities=32% Similarity=0.519 Sum_probs=52.0
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++++ .+|+++|||||+|.+.++|.+|+..+++..+
T Consensus 37 ~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i 93 (108)
T 2jrs_A 37 NITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFEL 93 (108)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 5899999999999999999999987 5788999999999999999999999988654
No 275
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.73 E-value=9.9e-09 Score=82.28 Aligned_cols=55 Identities=29% Similarity=0.545 Sum_probs=50.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++++ .+|+++|||||+|.+.+ |.+|+..+|+..+
T Consensus 12 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~ 67 (90)
T 2ki2_A 12 SATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDF 67 (90)
T ss_dssp TSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCC
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEE
Confidence 5899999999999999999999988 46899999999999999 9999999998765
No 276
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.73 E-value=1.4e-08 Score=85.45 Aligned_cols=56 Identities=23% Similarity=0.433 Sum_probs=52.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.++ +++++|||||+|.+.++|.+|+..+|+..+
T Consensus 36 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~ 92 (115)
T 2cpz_A 36 EFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQI 92 (115)
T ss_dssp SCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEE
Confidence 57999999999999999999999985 789999999999999999999999988654
No 277
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.73 E-value=7.9e-09 Score=85.80 Aligned_cols=53 Identities=26% Similarity=0.442 Sum_probs=49.2
Q ss_pred cHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
|+++|+++|++||.|.++.++ ..+|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 34 t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~ 86 (105)
T 2nlw_A 34 LKNVIHKIFSKFGKITNDFYP-EEDGKTKGYIFLEYASPAHAVDAVKNADGYKL 86 (105)
T ss_dssp HHHHHHHHHGGGSCEEEEECC-CBTTBSCCEEEEEECSSSHHHHHHHHCSSEEC
T ss_pred HHHHHHHHHhcCCCEEEEEee-CCCCCeeeEEEEEECCHHHHHHHHHHhCCccc
Confidence 789999999999999999998 46789999999999999999999999998765
No 278
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.73 E-value=1.1e-08 Score=84.53 Aligned_cols=56 Identities=30% Similarity=0.591 Sum_probs=51.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 24 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 80 (106)
T 2dgp_A 24 NLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKT 80 (106)
T ss_dssp TCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcc
Confidence 5899999999999999999999987 4689999999999999999999999998654
No 279
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.73 E-value=1.3e-08 Score=84.11 Aligned_cols=56 Identities=25% Similarity=0.488 Sum_probs=51.6
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC--CCCccceEEEEecchHHHHHHHHhc-CCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA--DGKLKGCGFINYANKISAVKAILKS-NKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~--~g~srG~gFV~F~s~e~A~~Ai~~l-n~riy 156 (451)
.+++++|+++|++||.|..+.++++. ++.++|||||+|.+.++|.+|+..+ |+..+
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~ 84 (107)
T 2cph_A 26 QANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHL 84 (107)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBS
T ss_pred cCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeE
Confidence 57999999999999999999999874 7889999999999999999999999 77654
No 280
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=1.4e-08 Score=84.06 Aligned_cols=54 Identities=20% Similarity=0.372 Sum_probs=48.4
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||. .++.++.+++++++|||||+|.+.++|.+|+ .+|+..+
T Consensus 26 ~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~ 79 (102)
T 1wez_A 26 RATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAM-AKDKANM 79 (102)
T ss_dssp TCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHH-TTSSCCS
T ss_pred CCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHH-HhCCCeE
Confidence 5899999999999995 4999999989999999999999999999999 4676543
No 281
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.72 E-value=7.3e-09 Score=86.54 Aligned_cols=54 Identities=15% Similarity=0.281 Sum_probs=49.5
Q ss_pred cHHHHHHHhcccCcceeeEEeeCCC---CCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 103 TEEEFKEHFGQYGDIIDAQLLKNAD---GKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~v~~d~~---g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++|++.|++||.|.++.+++++. ++++|+|||+|.+.++|.+|+..|||+.|
T Consensus 28 ~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f 84 (105)
T 3v4m_A 28 IVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKF 84 (105)
T ss_dssp HHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCEe
Confidence 5689999999999999999998753 36899999999999999999999999987
No 282
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.72 E-value=1.8e-08 Score=84.56 Aligned_cols=56 Identities=39% Similarity=0.615 Sum_probs=52.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++++ .++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 82 (115)
T 2dgo_A 26 EITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWL 82 (115)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5799999999999999999999998 4889999999999999999999999988654
No 283
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.72 E-value=2e-08 Score=80.70 Aligned_cols=55 Identities=25% Similarity=0.445 Sum_probs=51.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++++ +++++|||||+|.+.++|.+|+..+|+..+
T Consensus 19 ~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g~afV~f~~~~~a~~a~~~l~g~~~ 73 (92)
T 2dgv_A 19 DFTWKMLKDKFNECGHVLYADIKME-NGKSKGCGVVKFESPEVAERACRMMNGMKL 73 (92)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEES-SSCEEEEEEEEESSHHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEcc-CCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5799999999999999999999985 788999999999999999999999988664
No 284
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.71 E-value=1.6e-08 Score=86.31 Aligned_cols=56 Identities=18% Similarity=0.417 Sum_probs=52.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+++|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 46 ~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 101 (124)
T 2kt5_A 46 GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL 101 (124)
T ss_dssp SCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEES
T ss_pred CCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEE
Confidence 57999999999999999999999988899999999999999999999999988654
No 285
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.71 E-value=7.4e-09 Score=83.64 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=47.3
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++|+++|+++|.+||+|.++.+.. ++|||||+|.+.++|.+|+..||+..+
T Consensus 18 ~~te~~L~~lF~q~G~V~~~~l~~-----~kGfaFVey~~~~eA~~Ai~~Ln~~~l 68 (89)
T 2wbr_A 18 QIDGPTLRTLCMQHGPLVSFHPYL-----NQGIALCKYTTREEANKAQMALNNCVL 68 (89)
T ss_dssp TCCCHHHHHHHHHHSCEEEEEEET-----TTTEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cCCHHHHHHHHHhhCCEEEEEEcC-----CCcEEEEEECCHHHHHHHHHHhcCCEE
Confidence 589999999999999999999975 599999999999999999999998664
No 286
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1.6e-08 Score=83.81 Aligned_cols=55 Identities=24% Similarity=0.334 Sum_probs=49.9
Q ss_pred CCcHHHHHHHhcccCccee-eEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIID-AQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~-v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.|.. +.++.+.+|+++|||||+|.+.++|.+|+.. ++..+
T Consensus 26 ~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~ 81 (104)
T 1wg5_A 26 GCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERI 81 (104)
T ss_dssp TCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCS
T ss_pred CCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-Ccchh
Confidence 5899999999999999987 8888888999999999999999999999987 76543
No 287
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.70 E-value=2.6e-08 Score=86.08 Aligned_cols=56 Identities=25% Similarity=0.440 Sum_probs=51.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++++ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 57 ~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i 113 (129)
T 2kxn_B 57 YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMEL 113 (129)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4799999999999999999999988 5688999999999999999999999998665
No 288
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.70 E-value=1.8e-08 Score=90.08 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=55.9
Q ss_pred CccCCC----CCcHHHHHHHhcccC--cceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 95 KKPYKG----KITEEEFKEHFGQYG--DIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG--~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++|.| .+|+++|+++|++|| .|.++.++.| .+|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 56 ~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~ 124 (156)
T 3n9u_C 56 AAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVL 124 (156)
T ss_dssp CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 456666 589999999999999 9999999998 5899999999999999999999999998765
No 289
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.70 E-value=1.1e-08 Score=83.99 Aligned_cols=60 Identities=27% Similarity=0.466 Sum_probs=53.0
Q ss_pred CccCCC----CCcHHHHHHHhcccCcceeeEEeeCC--CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 95 KKPYKG----KITEEEFKEHFGQYGDIIDAQLLKNA--DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d~--~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++|.| .+++++|+++|++|| |.++.+++++ +|+++|||||+|.+.++|.+|+ .+++..+
T Consensus 20 ~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~ 85 (100)
T 2j76_E 20 YTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL 85 (100)
T ss_dssp CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCB
T ss_pred cEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEE
Confidence 445555 479999999999999 9999999885 7999999999999999999999 8988764
No 290
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.69 E-value=1.9e-08 Score=84.92 Aligned_cols=56 Identities=25% Similarity=0.379 Sum_probs=52.0
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++++ .+|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 51 ~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 107 (118)
T 2khc_A 51 EFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQV 107 (118)
T ss_dssp TCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEE
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 5899999999999999999999987 5789999999999999999999999988664
No 291
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=1.2e-08 Score=83.77 Aligned_cols=56 Identities=23% Similarity=0.393 Sum_probs=51.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 23 ~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2cqb_A 23 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 79 (102)
T ss_dssp SCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEE
T ss_pred CCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5799999999999999999999987 6788999999999999999999999988654
No 292
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.68 E-value=2.6e-08 Score=79.25 Aligned_cols=50 Identities=22% Similarity=0.578 Sum_probs=46.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHh
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 150 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ 150 (451)
.+++++|+++|++||.|.++.++.+ .+|+++|||||+|.+.++|.+|+..
T Consensus 22 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 72 (87)
T 3s7r_A 22 DTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ 72 (87)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS
T ss_pred CCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh
Confidence 5899999999999999999999988 4689999999999999999999966
No 293
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.68 E-value=2e-08 Score=83.65 Aligned_cols=56 Identities=27% Similarity=0.411 Sum_probs=51.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ .+|.++|||||+|.+.++|.+|+..+|+..+
T Consensus 37 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 93 (110)
T 1oo0_B 37 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 93 (110)
T ss_dssp TCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 5799999999999999999999987 5789999999999999999999999988654
No 294
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.68 E-value=1.6e-08 Score=81.77 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=51.2
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++.+ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (95)
T 2ek1_A 26 TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (95)
T ss_dssp TCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeE
Confidence 5899999999999999999988876 6788999999999999999999999988764
No 295
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.68 E-value=2.4e-08 Score=89.73 Aligned_cols=56 Identities=27% Similarity=0.411 Sum_probs=52.2
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++.+ .+|.++|||||+|.+.++|.+|+..+|+..+
T Consensus 83 ~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 139 (165)
T 1rk8_A 83 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEI 139 (165)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5799999999999999999999998 5889999999999999999999999988654
No 296
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=2.6e-08 Score=82.26 Aligned_cols=60 Identities=22% Similarity=0.545 Sum_probs=53.0
Q ss_pred ccCCC----CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 96 KPYKG----KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 96 ~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++|.+ .+++++|+++|++||.|.++.++++ .++.++|||||+|.+.++|.+|+.. ++..+
T Consensus 18 ~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~ 82 (105)
T 2dh8_A 18 KLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTL 82 (105)
T ss_dssp EECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEE
T ss_pred EEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeE
Confidence 44554 5799999999999999999999998 5789999999999999999999998 77554
No 297
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=1.8e-08 Score=82.07 Aligned_cols=56 Identities=21% Similarity=0.363 Sum_probs=51.0
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++.+ .+|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 82 (98)
T 2cqp_A 26 TVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPI 82 (98)
T ss_dssp TCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCee
Confidence 5899999999999999998888776 6789999999999999999999999988654
No 298
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=3e-08 Score=81.60 Aligned_cols=55 Identities=29% Similarity=0.596 Sum_probs=50.4
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+..+ ++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cq3_A 26 RFRDPDLRQMFGQFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKLHGTVV 80 (103)
T ss_dssp TCCHHHHHHHGGGTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5899999999999999999999988654 899999999999999999999988654
No 299
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=2.3e-08 Score=83.28 Aligned_cols=52 Identities=23% Similarity=0.445 Sum_probs=49.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
.+++++|+++|++||.|.++.++.+ .++.++|||||+|.+.++|.+|+..+|
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~ 78 (111)
T 1x4h_A 26 DSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAAS 78 (111)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhc
Confidence 5799999999999999999999988 568899999999999999999999998
No 300
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.67 E-value=2.1e-08 Score=85.20 Aligned_cols=55 Identities=9% Similarity=0.250 Sum_probs=50.7
Q ss_pred CCcHHHHHHHhcccCc---ceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGD---IIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~---V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|+.||. |..++++.++.|+++|||||+|.+.++|.+|+. +|+..+
T Consensus 28 ~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 85 (118)
T 2db1_A 28 SCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESM 85 (118)
T ss_dssp TCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEE
T ss_pred CCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeE
Confidence 5899999999999999 899999999789999999999999999999999 877543
No 301
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.67 E-value=1.7e-08 Score=88.36 Aligned_cols=55 Identities=9% Similarity=0.238 Sum_probs=51.0
Q ss_pred CCcHHHHHHHhcccCc---ceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGD---IIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~---V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++|+++|+++|++||. |.++.+++++.|+++|||||+|.+.++|.+|+. +|+..+
T Consensus 55 ~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 55 SCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp TCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 5899999999999999 899999999779999999999999999999999 887654
No 302
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.67 E-value=2.1e-08 Score=81.68 Aligned_cols=56 Identities=27% Similarity=0.324 Sum_probs=50.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC----CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA----DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~----~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 16 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 75 (98)
T 2cpf_A 16 STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV 75 (98)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCee
Confidence 58999999999999999999999874 348899999999999999999999988654
No 303
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=2.2e-08 Score=84.00 Aligned_cols=55 Identities=16% Similarity=0.395 Sum_probs=50.5
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++.++ ++.++|||||+|.+.++|.+|+ .+|+..+
T Consensus 36 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 91 (114)
T 2cq4_A 36 RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRL 91 (114)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEE
T ss_pred CCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEe
Confidence 58999999999999999999999884 5889999999999999999999 9987654
No 304
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.66 E-value=1.7e-08 Score=83.00 Aligned_cols=49 Identities=24% Similarity=0.643 Sum_probs=47.2
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHH
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 149 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~ 149 (451)
.+++++|+++|++||.|.++.++.+++|+++|||||+|.+.++|.+|+.
T Consensus 20 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~ 68 (102)
T 2xs2_A 20 RMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE 68 (102)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT
T ss_pred CCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh
Confidence 5799999999999999999999999889999999999999999999998
No 305
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=2.1e-08 Score=84.36 Aligned_cols=54 Identities=20% Similarity=0.405 Sum_probs=49.4
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++|+++|+++|+.| .|.++.++.++.|+++|||||+|.+.++|.+|+ .+|+..+
T Consensus 27 ~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~ 80 (109)
T 2dnn_A 27 SAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLM 80 (109)
T ss_dssp SCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEE
T ss_pred CCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeE
Confidence 58999999999999 899999999988999999999999999999999 6776543
No 306
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=2.3e-08 Score=83.65 Aligned_cols=55 Identities=27% Similarity=0.550 Sum_probs=50.4
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+.. .++|||||+|.+.++|.+|+..+|+..+
T Consensus 40 ~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg~afV~f~~~~~A~~Ai~~l~g~~~ 94 (109)
T 2err_A 40 RFRDPDLRQMFGQFGKILDVEIIFNER-GSKGFGFVTFENSADADRAREKLHGTVV 94 (109)
T ss_dssp TCCHHHHHHHGGGTCCCSCEEECCBTT-BCTTEEEEECCCSHHHHHHHHHHTTCEE
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEECCC-CCceEEEEEECCHHHHHHHHHHcCCCEE
Confidence 589999999999999999999998854 4899999999999999999999988764
No 307
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.65 E-value=2.1e-08 Score=83.51 Aligned_cols=55 Identities=22% Similarity=0.241 Sum_probs=50.4
Q ss_pred CCcHHHHHHHhcccCc---ceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGD---IIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~---V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|+.||. |.++.++.++.|+++|||||+|.+.++|.+|+. +|+..+
T Consensus 22 ~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~ 79 (107)
T 2lmi_A 22 SCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYM 79 (107)
T ss_dssp SCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCS
T ss_pred CCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCccee
Confidence 5899999999999998 999999998779999999999999999999999 877543
No 308
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=1.6e-08 Score=85.85 Aligned_cols=51 Identities=16% Similarity=0.197 Sum_probs=46.3
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++++++|+++|++||.|.++.++.+ +|||||+|.+.++|.+|+..||++.+
T Consensus 38 ~~te~~L~~~F~~fG~v~~v~i~~~-----rgfaFV~f~~~~~A~~Ai~~lnG~~~ 88 (114)
T 2cq2_A 38 GVSRNQLLPVLEKCGLVDALLMPPN-----KPYSFARYRTTEESKRAYVTLNGKEV 88 (114)
T ss_dssp TCCHHHHHHHHHHHSCEEEEECCTT-----CSCEEEEESSHHHHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 4799999999999999999888653 79999999999999999999999754
No 309
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=2.1e-08 Score=84.52 Aligned_cols=55 Identities=16% Similarity=0.174 Sum_probs=50.6
Q ss_pred CCcHHHHHHHhcccCcc-eeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDI-IDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V-~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.| ..+.++.+++|+++|||||+|.+.++|.+|+.. |+..+
T Consensus 26 ~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~ 81 (114)
T 2cpy_A 26 SITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKL 81 (114)
T ss_dssp TSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEE
T ss_pred cCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCcc
Confidence 58999999999999999 899999998999999999999999999999987 76543
No 310
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.64 E-value=3e-08 Score=84.66 Aligned_cols=56 Identities=29% Similarity=0.471 Sum_probs=52.0
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.|.++.++.+ .++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 33 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 89 (126)
T 3ex7_B 33 EATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDL 89 (126)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCee
Confidence 5799999999999999999999988 4889999999999999999999999988764
No 311
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.64 E-value=1.9e-08 Score=77.68 Aligned_cols=53 Identities=25% Similarity=0.449 Sum_probs=48.0
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKK 154 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~r 154 (451)
.+++++|+++|++||.|.++.++.+ .+|.++|||||+|.+.++|.+|+.. ++.
T Consensus 10 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~ 63 (75)
T 1iqt_A 10 DTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYH 63 (75)
T ss_dssp SCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCC
Confidence 5899999999999999999999887 5688999999999999999999986 443
No 312
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=2.9e-08 Score=83.10 Aligned_cols=56 Identities=21% Similarity=0.333 Sum_probs=51.7
Q ss_pred CCcHHHHHHHhcccCcce--------eeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDII--------DAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~--------~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|. .+.++.+ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 26 SVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp TCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 589999999999999999 6999988 6789999999999999999999999988764
No 313
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.64 E-value=2.5e-08 Score=86.66 Aligned_cols=56 Identities=23% Similarity=0.429 Sum_probs=51.6
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|+.||.|.++.++++ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 53 ~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 109 (139)
T 1u6f_A 53 TVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNI 109 (139)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEEC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5899999999999999999999988 4688999999999999999999999988654
No 314
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.64 E-value=3e-08 Score=81.61 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=49.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++++..+ ++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l~g~~~ 80 (103)
T 2cqi_A 26 DVTEVLILQLFSQIGPCKSCKMITEHTS-NDPYCFVEFYEHRDAAAALAAMNGRKI 80 (103)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEECCCCS-SCCEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred cCCHHHHHHHHHhcCCEeEEEEEecCCC-CCCEEEEEECCHHHHHHHHHHhCCCCc
Confidence 5799999999999999999999998544 699999999999999999999988654
No 315
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.64 E-value=3.8e-08 Score=79.05 Aligned_cols=54 Identities=20% Similarity=0.417 Sum_probs=50.6
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++| .|.++.++++.+|+++|||||+|.+.++|.+|+. +|+..+
T Consensus 21 ~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~ 74 (91)
T 2dgw_A 21 NVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYM 74 (91)
T ss_dssp SCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEE
T ss_pred CCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCcee
Confidence 58999999999999 9999999999889999999999999999999999 988654
No 316
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.63 E-value=2.5e-08 Score=85.71 Aligned_cols=70 Identities=24% Similarity=0.246 Sum_probs=55.8
Q ss_pred HHHHHHHh-cCCccCCC----CCcHHHHHHHhcccCcc----eeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 85 SAVKAILK-SNKKPYKG----KITEEEFKEHFGQYGDI----IDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 85 ~A~~Al~~-lng~~f~G----~~tee~L~~~F~~fG~V----~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
.+.+.+.. -..++|.+ ++|+++|+++|++||.| ..+.++.+.+|+++|||||+|.+.++|.+|+.. |+..
T Consensus 13 ~~~~~~~~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~ 91 (123)
T 2dha_A 13 EVAQFLSKENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDL 91 (123)
T ss_dssp HHHHHHHCCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEE
T ss_pred hHHhhccCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCe
Confidence 34444432 22345555 58999999999999875 799999998999999999999999999999986 6544
No 317
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.62 E-value=2e-08 Score=79.89 Aligned_cols=56 Identities=21% Similarity=0.331 Sum_probs=50.2
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC-CC-CccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA-DG-KLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~-~g-~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+. ++ +++|||||+|.+.++|.+|+..+|+..+
T Consensus 15 ~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 72 (88)
T 4a8x_A 15 NVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQI 72 (88)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeE
Confidence 58999999999999999999998874 33 3899999999999999999999988765
No 318
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=2.5e-08 Score=83.41 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=44.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
++|+++|+++|++||.|.++.++++ +|||||+|++.++|..|+..+++
T Consensus 27 ~vte~dL~~lF~~fG~V~~v~i~~~-----kGfaFVeF~~~~~A~~Ai~~l~~ 74 (105)
T 1sjq_A 27 DVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTS 74 (105)
T ss_dssp TSCHHHHHHHHHHHCCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcc
Confidence 5899999999999999999999976 89999999999999999998764
No 319
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.62 E-value=4.8e-08 Score=80.39 Aligned_cols=54 Identities=15% Similarity=0.299 Sum_probs=49.3
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++|| |.++.+++++ +++++|||||+|.+.++|.+|+ .+|+..+
T Consensus 26 ~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 80 (103)
T 2dng_A 26 NTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALL 80 (103)
T ss_dssp TCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeE
Confidence 579999999999997 9999999984 6899999999999999999999 8987654
No 320
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.62 E-value=8.2e-08 Score=81.44 Aligned_cols=79 Identities=16% Similarity=0.253 Sum_probs=62.3
Q ss_pred CCCceEEEcCCCCCCC----------HHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCC
Q psy300 30 TKRGRLFIKNLPFKIT----------EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 99 (451)
Q Consensus 30 ~~~~~lfVgnLp~~vt----------e~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~ 99 (451)
.+++.|.+.|+=.... +++|++.|++||.|.++.+.++ .++|++||+|.+.++|.+|+..|||+.|.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~---~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~ 81 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN---SAQGNVYVKCPSIAAAIAAVNALHGRWFA 81 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT---CTTCCEEEECSSHHHHHHHHHHHTTCEET
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC---CCcEEEEEEECCHHHHHHHHHHhCCCEEC
Confidence 3567888888832211 2578999999999999999665 25899999999999999999999999999
Q ss_pred CC------CcHHHHHHHh
Q psy300 100 GK------ITEEEFKEHF 111 (451)
Q Consensus 100 G~------~tee~L~~~F 111 (451)
|+ ..++...+.|
T Consensus 82 GR~i~v~~~~~~~y~~~f 99 (114)
T 3s6e_A 82 GKMITAAYVPLPTYHNLF 99 (114)
T ss_dssp TEECEEEEECHHHHHHHC
T ss_pred CEEEEEEEEcHHHHHHhC
Confidence 96 3555555444
No 321
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.61 E-value=4.7e-08 Score=81.77 Aligned_cols=52 Identities=23% Similarity=0.607 Sum_probs=48.5
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
.+++++|+++|++||.|.++.++++ .+|.++|||||+|.+.++|.+|+..++
T Consensus 36 ~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~~ 88 (109)
T 2rs2_A 36 QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR 88 (109)
T ss_dssp TCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSSC
T ss_pred CCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHCC
Confidence 5899999999999999999999998 468999999999999999999998874
No 322
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=3.8e-08 Score=81.18 Aligned_cols=54 Identities=28% Similarity=0.487 Sum_probs=49.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC-C-CCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA-D-GKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~-~-g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++|| |.++.++.++ + ++++|||||+|.+.++|.+|+ .+|+..+
T Consensus 26 ~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~ 81 (104)
T 1wi8_A 26 DVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESL 81 (104)
T ss_dssp SCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEE
T ss_pred cCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEe
Confidence 579999999999999 9999999885 3 899999999999999999999 9987654
No 323
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.60 E-value=2.4e-08 Score=85.25 Aligned_cols=54 Identities=20% Similarity=0.307 Sum_probs=49.3
Q ss_pred cHHHHHHHhcccCcceeeEEeeCC-----CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 103 TEEEFKEHFGQYGDIIDAQLLKNA-----DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~v~~d~-----~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++|++.|++||.|.++.+++++ +++++|++||+|.+.++|.+|+..|||+.|
T Consensus 38 leedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 38 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 468999999999999999999873 356789999999999999999999999987
No 324
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=5e-08 Score=83.33 Aligned_cols=55 Identities=18% Similarity=0.340 Sum_probs=48.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEe-eCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLL-KNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~-~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.|..+.++ .+.+|+++|||||+|.+.++|.+|+. +|+..+
T Consensus 36 ~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~ 91 (124)
T 1wel_A 36 EAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYM 91 (124)
T ss_dssp TCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCS
T ss_pred CCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeE
Confidence 58999999999999999985554 45789999999999999999999999 888664
No 325
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=4.5e-08 Score=82.36 Aligned_cols=53 Identities=28% Similarity=0.566 Sum_probs=49.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
.+++++|+++|++||.|.++.++++ .+++++|||||+|.+.++|.+|+..+++
T Consensus 28 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 81 (116)
T 2cqd_A 28 HTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP 81 (116)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC
T ss_pred CCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC
Confidence 5799999999999999999999988 5689999999999999999999999886
No 326
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.60 E-value=3.7e-08 Score=82.55 Aligned_cols=56 Identities=20% Similarity=0.363 Sum_probs=50.1
Q ss_pred CCcHHHHH---HHhcccCcceeeEEeeCC----CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFK---EHFGQYGDIIDAQLLKNA----DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~---~~F~~fG~V~~v~v~~d~----~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+ ++|++||.|..+.++++. +++++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 26 RLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp TTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 58999999 999999999999998874 236779999999999999999999988764
No 327
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.59 E-value=5e-08 Score=92.67 Aligned_cols=61 Identities=26% Similarity=0.438 Sum_probs=55.3
Q ss_pred ccCCC----CCcHHHHHHHhcccC--cceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 96 KPYKG----KITEEEFKEHFGQYG--DIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 96 ~~f~G----~~tee~L~~~F~~fG--~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++|+| .+|+++|+++|++|| .|.+|.|+++ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 70 ~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~ 137 (229)
T 3q2s_C 70 ALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKREL 137 (229)
T ss_dssp EEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCB
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeE
Confidence 45665 579999999999999 9999999998 5899999999999999999999999998765
No 328
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.59 E-value=3.8e-08 Score=80.20 Aligned_cols=54 Identities=17% Similarity=0.271 Sum_probs=49.5
Q ss_pred CCcHHHHH----HHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFK----EHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~----~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+ ++|++||.|.++.++.++.+ +|||||+|.+.++|.+|+..+|+..+
T Consensus 20 ~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~--rg~afV~f~~~~~A~~Ai~~l~g~~~ 77 (96)
T 2dgx_A 20 RLSRKELQQLLQEAFARHGKVKSVELSPHTDY--QLKAVVQMENLQDAIGAVNSLHRYKI 77 (96)
T ss_dssp TSCHHHHHHHHHHHHHHHSCEEEEEECSCCST--TCCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCHHHHHHHHHHhccccCcEEEEEEEeCCCC--CeEEEEEECCHHHHHHHHHHhCCCEE
Confidence 57999999 99999999999999988655 89999999999999999999988654
No 329
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.59 E-value=5.9e-08 Score=83.83 Aligned_cols=54 Identities=20% Similarity=0.302 Sum_probs=47.0
Q ss_pred CCcHHHHH----HHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFK----EHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~----~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++++++|+ ++|++||.|.++.+.+ +++++|||||+|.+.++|..|+..+|+..+
T Consensus 40 ~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l 97 (127)
T 2a3j_A 40 EVPKEKLQALLYALASSQGDILDIVVDL--SDDNSGKAYIVFATQESAQAFVEAFQGYPF 97 (127)
T ss_dssp TSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCCCEEEEESSHHHHHHHHHHSTTCCC
T ss_pred CCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 46787765 7999999999988754 578899999999999999999999998765
No 330
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.58 E-value=7.3e-08 Score=85.46 Aligned_cols=56 Identities=25% Similarity=0.279 Sum_probs=51.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC-CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~-~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.|..|.++.+. ++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 50 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 106 (156)
T 1h2v_Z 50 YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRL 106 (156)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 58999999999999999999999984 688999999999999999999999987654
No 331
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.58 E-value=4.5e-08 Score=84.70 Aligned_cols=56 Identities=23% Similarity=0.393 Sum_probs=51.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++++ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 74 ~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 130 (140)
T 2ku7_A 74 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESEL 130 (140)
T ss_dssp TCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEE
T ss_pred CCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5799999999999999999999988 6789999999999999999999999988654
No 332
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.58 E-value=6.9e-08 Score=79.97 Aligned_cols=50 Identities=18% Similarity=0.338 Sum_probs=45.2
Q ss_pred CCCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCC
Q psy300 100 GKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 100 G~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
..+++++|+++|++||.|.++.++ ++++|||||+|.+.++|..|+..+++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~----~~~rGfaFVeF~~~~~A~~Ai~~~~~ 76 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS----SKKPGTAVVEFATVKAAELAVQNEVG 76 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE----SSSSSEEEEEESCHHHHHHHHHTCCB
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc----cCCCCEEEEEECCHHHHHHHHHhcCC
Confidence 368999999999999999999998 36799999999999999999998654
No 333
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2.4e-08 Score=84.14 Aligned_cols=56 Identities=23% Similarity=0.410 Sum_probs=47.9
Q ss_pred CccCCC----CCcHHHHHHHhcccCcceeeEEeeCC-C---CCccceEEEEecchHHHHHHHHhc
Q psy300 95 KKPYKG----KITEEEFKEHFGQYGDIIDAQLLKNA-D---GKLKGCGFINYANKISAVKAILKS 151 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d~-~---g~srG~gFV~F~s~e~A~~Ai~~l 151 (451)
.++|.| .+++++|+++|++||.|. +.++.+. + |+++|||||+|.+.++|.+|+..+
T Consensus 9 ~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 9 RKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 345554 589999999999999999 7777653 3 789999999999999999999988
No 334
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=8.2e-08 Score=78.91 Aligned_cols=50 Identities=32% Similarity=0.632 Sum_probs=47.0
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHh
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 150 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ 150 (451)
.+++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|.+|+..
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~ 76 (103)
T 2cqg_A 26 KTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 76 (103)
T ss_dssp SCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHS
T ss_pred cCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHHc
Confidence 5899999999999999999999998 4689999999999999999999985
No 335
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=6.5e-08 Score=81.37 Aligned_cols=55 Identities=20% Similarity=0.491 Sum_probs=49.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++.+ .++.++|||||+|.+.++|.+|+.. ++..+
T Consensus 38 ~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~ 93 (116)
T 1x4b_A 38 ETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSI 93 (116)
T ss_dssp CCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEE
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEE
Confidence 5899999999999999999999998 5689999999999999999999987 66543
No 336
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.54 E-value=3.6e-08 Score=81.99 Aligned_cols=48 Identities=19% Similarity=0.164 Sum_probs=44.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
++|+++|+++|++||.|.++.++++ +|||||+|++.++|..|+..+++
T Consensus 27 ~~te~dL~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~ 74 (102)
T 1x4d_A 27 KNLRYQLLQLVEPFGVISNHLILNK-----INEAFIEMATTEDAQAAVDYYTT 74 (102)
T ss_dssp SSHHHHHHTTTGGGSCEEEEEECSS-----SSCEEEEESSHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhcCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHHcC
Confidence 6789999999999999999999876 68999999999999999999875
No 337
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.54 E-value=7.2e-08 Score=80.01 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=47.6
Q ss_pred CCcHHHHHHHhcccCc-ceeeEEe-eC-CCCCccceEEEEecchHHHHHHHHhcC
Q psy300 101 KITEEEFKEHFGQYGD-IIDAQLL-KN-ADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~-V~~v~v~-~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
.+++++|+++|++||. |.++.++ .+ .+|.++|||||+|.+.++|.+|+..++
T Consensus 19 ~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 73 (109)
T 2dis_A 19 MKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLM 73 (109)
T ss_dssp TSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTT
T ss_pred cCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhh
Confidence 5899999999999998 9999998 55 467899999999999999999999995
No 338
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.53 E-value=9.1e-08 Score=87.24 Aligned_cols=56 Identities=18% Similarity=0.417 Sum_probs=52.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+.++.++|||||+|.+.++|.+|+..+|+..+
T Consensus 99 ~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l 154 (177)
T 2f3j_A 99 GVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPL 154 (177)
T ss_dssp CCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 57999999999999999999999988899999999999999999999999988754
No 339
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.53 E-value=7e-08 Score=79.94 Aligned_cols=49 Identities=14% Similarity=0.333 Sum_probs=45.4
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 154 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~r 154 (451)
++|+++|+++|++||.|.++.++++ ||||||+|++.++|.+|+..+++.
T Consensus 32 ~~te~~L~~lF~~fG~V~~v~i~~~-----kg~AFVef~~~~~A~~Av~~ln~~ 80 (100)
T 3r27_A 32 GVVEADLVEALQEFGPISYVVVMPK-----KRQALVEFEDVLGACNAVNYAADN 80 (100)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHhccCCEEEEEEEcC-----CCEEEEEECCHHHHHHHHHHhcCC
Confidence 5899999999999999999999864 899999999999999999998764
No 340
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=2.7e-07 Score=78.96 Aligned_cols=70 Identities=14% Similarity=0.133 Sum_probs=60.0
Q ss_pred CCCCCCCceEEEcCCCCC-CCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEcc-HHHHHHHHHhcC--CccCCC
Q psy300 26 KPDKTKRGRLFIKNLPFK-ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYAN-KISAVKAILKSN--KKPYKG 100 (451)
Q Consensus 26 ~~~~~~~~~lfVgnLp~~-vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~-~~~A~~Al~~ln--g~~f~G 100 (451)
+......+-|||+||+.+ ++.++|+++|++||+|.+|.+.++.+ .|||.|.+ +.+|..|+..+| +..+.|
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln~~~~~i~g 85 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDANNGNLQLRN 85 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTTTSCBCTTS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhhcCCcEEeC
Confidence 345678899999999999 99999999999999999999987642 59999999 799999999985 444544
No 341
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.50 E-value=1.4e-07 Score=78.50 Aligned_cols=54 Identities=20% Similarity=0.354 Sum_probs=48.6
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.+..+ +.++|||||+|.+.++|.+|+..+|+..+
T Consensus 33 ~~t~~~l~~~F~~~G~v~~~~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 86 (109)
T 1x4a_A 33 DIRTKDIEDVFYKYGAIRDIDLKNR--RGGPPFAFVEFEDPRDAEDAVYGRDGYDY 86 (109)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEECCS--SSSSCCEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEEC--CCCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 5799999999999999999999664 45799999999999999999999988654
No 342
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.50 E-value=7.9e-08 Score=78.71 Aligned_cols=52 Identities=19% Similarity=0.330 Sum_probs=48.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.|.++.++.+ ++|||||+|.+.++|.+|+..+++..+
T Consensus 11 ~~t~~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~A~~~l~g~~~ 62 (101)
T 2hvz_A 11 GAGKGELERAFSYYGPLRTVWIARN----PPGFAFVEFEDPRDAEDAVRGLDGKVI 62 (101)
T ss_dssp SCSHHHHHHHHHHHCCCSEEEEESS----SSSEEEEECSSHHHHHHHHHHHHHSCS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeeC----CCCEEEEEECCHHHHHHHHHHHCCCeE
Confidence 5899999999999999999999987 689999999999999999999987654
No 343
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.50 E-value=2.2e-07 Score=83.66 Aligned_cols=54 Identities=17% Similarity=0.301 Sum_probs=48.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCccc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 157 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~ 157 (451)
.+|+++|+++|++||.|.++.+..+ .++|||||+|.+.++|..|+..||++.+.
T Consensus 57 ~vted~L~~~Fs~fG~V~~V~i~~k---~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~ 110 (164)
T 1sjr_A 57 PVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQNIY 110 (164)
T ss_dssp CCCHHHHHHHHHHHSCEEEEEEEES---SSCEEEEEEESCHHHHHHHHHHSTTBCSS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeC---CCCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 5899999999999999999999764 25899999999999999999999998764
No 344
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.49 E-value=8.8e-08 Score=81.24 Aligned_cols=51 Identities=16% Similarity=0.277 Sum_probs=46.7
Q ss_pred cHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++|++.|++||.|.++.+.++. ++|||||+|.+.++|.+|+..|||+.|
T Consensus 30 l~edl~~~f~kfG~V~~v~i~~~~---~~G~~fV~f~~~e~A~~Ai~~lnG~~f 80 (114)
T 3s6e_A 30 IKDDVIEECNKHGGVIHIYVDKNS---AQGNVYVKCPSIAAAIAAVNALHGRWF 80 (114)
T ss_dssp HHHHHHHHHTTTTCCSEEEECTTC---TTCCEEEECSSHHHHHHHHHHHTTCEE
T ss_pred HHHHHHHHHhccCCEEEEEEecCC---CcEEEEEEECCHHHHHHHHHHhCCCEE
Confidence 458999999999999999997763 589999999999999999999999987
No 345
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=1.2e-07 Score=79.64 Aligned_cols=51 Identities=16% Similarity=0.228 Sum_probs=46.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.+++ ++|||||+|.+.++|.+|+..+|++.+
T Consensus 21 ~~te~~L~~~F~~~G~i~~v~i~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~ 71 (111)
T 1whx_A 21 GTLAAEIQETFSRFGSLGRVLLPE-----GGITAIVEFLEPLEARKAFRHLAYSKF 71 (111)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCS-----SSSCEEEEESCHHHHHHHHHHHTTCBS
T ss_pred CCCHHHHHHHHHhcCCEEEEEEeC-----CCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 579999999999999999999875 489999999999999999999998765
No 346
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.48 E-value=1.5e-07 Score=76.84 Aligned_cols=51 Identities=33% Similarity=0.533 Sum_probs=47.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++++ +|||||+|.+.++|.+|+..+++..+
T Consensus 26 ~~t~~~l~~~F~~~G~i~~v~~~~~-----kg~afV~f~~~~~a~~a~~~l~g~~~ 76 (99)
T 2cpj_A 26 DITEEEMRKLFEKYGKAGEVFIHKD-----KGFGFIRLETRTLAEIAKVELDNMPL 76 (99)
T ss_dssp TCCHHHHHHHTSTTCCCSEEEEETT-----TTEEEEECSSSHHHHHHHHHHTTCCB
T ss_pred CCCHHHHHHHHhhcCCeEEEEEecC-----CCEEEEEECCHHHHHHHHHHhCCCEe
Confidence 5899999999999999999999865 89999999999999999999988764
No 347
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.48 E-value=2e-07 Score=78.11 Aligned_cols=54 Identities=26% Similarity=0.412 Sum_probs=49.3
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ +.++|||||+|.+.++|.+|+..+|+..+
T Consensus 19 ~~t~~~l~~~F~~~G~v~~v~i~~~--~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 72 (115)
T 3lqv_A 19 KITAEEMYDIFGKYGPIRQIRVGNT--PETRGTAYVVYEDIFDAKNAVDHLSGFNV 72 (115)
T ss_dssp TCCHHHHHHHHHTTSCEEEEEEECS--TTTTTCEEEEESSHHHHHHHHHHHTTCBS
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeeC--CCCCcEEEEEECCHHHHHHHHHHcCCCEE
Confidence 5799999999999999999999875 45699999999999999999999998765
No 348
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=1.1e-07 Score=77.87 Aligned_cols=53 Identities=34% Similarity=0.449 Sum_probs=47.3
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.| .++.+.+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 78 (101)
T 2fc9_A 26 SATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREI 78 (101)
T ss_dssp TCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEE
T ss_pred CCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 58999999999999987 566667889999999999999999999999987654
No 349
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.47 E-value=1.2e-07 Score=81.81 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=47.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecc----hHH----HHHHHH--hcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYAN----KIS----AVKAIL--KSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s----~e~----A~~Ai~--~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.| .+|+|+|||||+|.+ +++ |.+|+. .+|+..+
T Consensus 17 ~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I 83 (136)
T 2j8a_A 17 NIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFI 83 (136)
T ss_dssp CCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCee
Confidence 4799999999999999999999999 578999999999996 333 788888 6776654
No 350
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=97.85 E-value=1.9e-08 Score=84.85 Aligned_cols=61 Identities=28% Similarity=0.333 Sum_probs=53.6
Q ss_pred ccCCC----CCcHHHHHHHhcccCccee--------eEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 96 KPYKG----KITEEEFKEHFGQYGDIID--------AQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 96 ~~f~G----~~tee~L~~~F~~fG~V~~--------v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++|.+ .+++++|+++|++||.|.. +.++.+ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 9 ~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 9 TIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 44555 4799999999999999998 888887 5689999999999999999999999988654
No 351
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.46 E-value=9.7e-08 Score=80.55 Aligned_cols=53 Identities=11% Similarity=0.215 Sum_probs=47.6
Q ss_pred CCcHHHHHHHhcccC-cceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYG-DIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG-~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++++++|+++|++|| .|..+.+..+ .++|||||+|.+.++|.+|+..+|+..+
T Consensus 39 ~~te~dL~~~F~~~G~~v~~v~i~~~---~~rGfaFV~F~~~e~A~~Ai~~lng~~l 92 (111)
T 2jvr_A 39 GCSWQDLKDLARENSLETTFSSVNTR---DFDGTGALEFPSEEILVEALERLNNIEF 92 (111)
T ss_dssp CCCHHHHHHHHHHHTCCCSEEECSSC---SSSCCEEEEESSHHHHHHHHHHTTTEEE
T ss_pred CCCHHHHHHHHHHhCCeeEEEEEEcC---CCCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 589999999999999 8999988643 4799999999999999999999998765
No 352
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=2.1e-07 Score=73.53 Aligned_cols=51 Identities=35% Similarity=0.582 Sum_probs=46.4
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhc-CCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS-NKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~l-n~riy 156 (451)
.+++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|+..+ ++..+
T Consensus 23 ~~t~~~l~~~f~~~G~i~~~~~~~~-----kg~afV~f~~~~~A~~a~~~l~~~~~~ 74 (85)
T 2ytc_A 23 TITETDLRNHFYQFGEIRTITVVQR-----QQCAFIQFATRQAAEVAAEKSFNKLIV 74 (85)
T ss_dssp TSCHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHTTTTTCEE
T ss_pred CCCHHHHHHHHHhCCCEeEEEEECC-----CCEEEEEECCHHHHHHHHHHhcCCeeE
Confidence 5899999999999999999999974 899999999999999999998 76554
No 353
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.46 E-value=1.6e-07 Score=81.04 Aligned_cols=57 Identities=28% Similarity=0.389 Sum_probs=49.0
Q ss_pred ccCCC----CCcHHHHHHHhcccCcce--eeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCC
Q psy300 96 KPYKG----KITEEEFKEHFGQYGDII--DAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 154 (451)
Q Consensus 96 ~~f~G----~~tee~L~~~F~~fG~V~--~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~r 154 (451)
++|.| ++|+++|+++|++| .|. ++.++.++.|+++|||||+|.+.++|.+|+.. ++.
T Consensus 44 ~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~ 106 (126)
T 2hgm_A 44 FVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKE 106 (126)
T ss_dssp EEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTC
T ss_pred EEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCC
Confidence 44554 58999999999999 566 89999987799999999999999999999986 443
No 354
>3tr4_A Inorganic pyrophosphatase; central intermediary metabolism, hydrolase; HET: MSE; 2.00A {Coxiella burnetii} SCOP: b.40.5.0
Probab=98.46 E-value=1.3e-07 Score=85.84 Aligned_cols=47 Identities=21% Similarity=0.343 Sum_probs=35.8
Q ss_pred cCCCccccCCCCEEEEEEeecCCCc-cceeeeccccceEEEEEeeCCCCchh
Q psy300 389 HDIPLYSNVKDKIFNMVVEIPRWTN-AKMEVGNAMEMRLYLVCFNLPSPLGY 439 (451)
Q Consensus 389 hd~~l~~~~~~~~~~~~~e~p~~~~-~k~e~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
||||+..+. .++||||||||||+ +|+|+.++. +...+---|.++++|
T Consensus 6 h~ip~g~~~--~~vnvvIEIP~gs~~~KyE~dk~~--g~i~~DR~l~~~~~Y 53 (178)
T 3tr4_A 6 FLVSAGKGI--DDFNVIIEIPANGGEVKYEYDKEL--GFLTVDRFMPTSMRY 53 (178)
T ss_dssp --CCCEEET--TEEEEEEEECTTCCSEEEEEETTT--TEEEEEEECCSSBCC
T ss_pred ccCCCCCCC--CEEEEEEEecCCCCcEEEEEecCC--CcEEEEEecCcCccC
Confidence 999999876 99999999999999 999999975 444444445666554
No 355
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=1.2e-07 Score=78.87 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=44.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 154 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~r 154 (451)
.+++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|+..+++.
T Consensus 26 ~~te~~L~~~F~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~~ 74 (104)
T 1wex_A 26 SVVEADLVEALEKFGTICYVMMMPF-----KRQALVEFENIDSAKECVTFAADV 74 (104)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHhCCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhccC
Confidence 5899999999999999999999864 899999999999999999988653
No 356
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.45 E-value=2.1e-07 Score=75.60 Aligned_cols=51 Identities=20% Similarity=0.312 Sum_probs=46.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.+.++ +|||||+|.+.++|.+|+..+|+..+
T Consensus 28 ~~t~~~l~~~F~~~G~v~~v~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~ 78 (97)
T 1why_A 28 NTSLAALAREFDRFGSIRTIDHVKG-----DSFAYIQYESLDAAQAACAKMRGFPL 78 (97)
T ss_dssp SCCHHHHHHHHHTTSCEEEEEECSS-----SCCEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCHHHHHHHHHhcCCeeEEEEeCC-----CCEEEEEECCHHHHHHHHHHHCCCEe
Confidence 5899999999999999999999865 78999999999999999999988764
No 357
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=2.1e-07 Score=75.71 Aligned_cols=51 Identities=25% Similarity=0.473 Sum_probs=46.6
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.+. +++|||||+|.+.++|.+|+..+|+..+
T Consensus 24 ~~t~~~l~~~F~~~G~i~~v~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 74 (97)
T 1x5p_A 24 DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQV 74 (97)
T ss_dssp SCCHHHHHHHHTTTSCEEEEEEE-----TTTTEEEEEESSHHHHHHHHHHTTTEEE
T ss_pred CCCHHHHHHHHhhCCCEEEEEec-----CCCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 58999999999999999999985 4589999999999999999999988654
No 358
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.45 E-value=1.9e-07 Score=77.70 Aligned_cols=50 Identities=20% Similarity=0.429 Sum_probs=46.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+.++.+ |||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~F~~~G~i~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~ 75 (108)
T 1x4c_A 26 SGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKF 75 (108)
T ss_dssp SCCHHHHHHHHGGGSCEEEEEEETT------TEEEEEESSHHHHHHHHHHSSSEEE
T ss_pred CCCHHHHHHHHHhcCCEeEEEEecC------CEEEEEECCHHHHHHHHHHHCcCCc
Confidence 5899999999999999999999876 8999999999999999999988765
No 359
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=7.9e-08 Score=80.54 Aligned_cols=56 Identities=21% Similarity=0.378 Sum_probs=47.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.|..+.+..+ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 36 ~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 92 (115)
T 2cpx_A 36 RVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKL 92 (115)
T ss_dssp TCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBC
T ss_pred CCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEe
Confidence 5799999999999999966544332 3788999999999999999999999988654
No 360
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.44 E-value=1.9e-07 Score=78.81 Aligned_cols=50 Identities=20% Similarity=0.429 Sum_probs=46.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++.+ |||||+|.+.++|.+|+..||+..+
T Consensus 27 ~~t~~~l~~~F~~~G~v~~~~i~~~------g~afV~f~~~~~a~~Ai~~l~g~~~ 76 (115)
T 3beg_B 27 SGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKLDNTKF 76 (115)
T ss_dssp SCCTTHHHHHHGGGSCEEEEEECTT------SEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEecC------CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 5899999999999999999999875 8999999999999999999998765
No 361
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=1.4e-07 Score=80.61 Aligned_cols=48 Identities=21% Similarity=0.231 Sum_probs=44.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
++|+++|+++|++||.|.++.++++ +|||||+|++.++|.+|+..+++
T Consensus 42 ~vte~dL~~lF~~fG~V~~v~i~~~-----kG~AFVeF~~~e~A~~Ai~~l~~ 89 (119)
T 2ad9_A 42 DVTEGEVISLGLPFGKVTNLLMLKG-----KNQAFIEMNTEEAANTMVNYYTS 89 (119)
T ss_dssp TCCHHHHHHHHTTTSCCCEEEEEGG-----GTEEEEECSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhcc
Confidence 5899999999999999999999986 89999999999999999998864
No 362
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=2.3e-07 Score=75.95 Aligned_cols=51 Identities=29% Similarity=0.479 Sum_probs=46.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.+.+ ++|||||+|.+.++|.+|+..+|+..+
T Consensus 38 ~~~~~~l~~~f~~~G~i~~~~~~~-----~~g~afV~f~~~~~A~~Ai~~l~g~~~ 88 (101)
T 2la4_A 38 FATEADLIPLFQNFGFILDFKHYP-----EKGCCFIKYDTHEQAAVCIVALANFPF 88 (101)
T ss_dssp TCCHHHHHHHHHTTSCCSEEEEET-----TTTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHhCCCEEEEEEec-----CCCEEEEEECCHHHHHHHHHHhCCCeE
Confidence 579999999999999999999984 489999999999999999999988664
No 363
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.43 E-value=2.4e-07 Score=80.37 Aligned_cols=53 Identities=17% Similarity=0.333 Sum_probs=47.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccce-EEEEecchHHHHHHHHhcCCCccc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKSNKKPYK 157 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~-gFV~F~s~e~A~~Ai~~ln~riy~ 157 (451)
.+|+++|+++|++||.|.++.++.+ ++|| |||+|.+.++|.+|+..|||+.+.
T Consensus 39 ~vte~~L~~lFs~yG~V~~V~i~~~----~~gfqAFVef~~~~~A~~Ai~~LnG~~i~ 92 (130)
T 3zzy_A 39 PVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIY 92 (130)
T ss_dssp CCCHHHHHHHHTTSSCEEEEEEEEE----TTEEEEEEEESCHHHHHHHHHHHTTCEEE
T ss_pred CCCHHHHHHHHhCcCCEEEEEEEcC----CCCcEEEEEECCHHHHHHHHHHcCCCeec
Confidence 5899999999999999999998864 3677 999999999999999999987653
No 364
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.42 E-value=1.7e-07 Score=77.68 Aligned_cols=47 Identities=21% Similarity=0.299 Sum_probs=43.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
.+++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|+..++
T Consensus 26 ~~te~~L~~~F~~fG~v~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~ 72 (101)
T 2cq1_A 26 EVTETEVIALGLPFGKVTNILMLKG-----KNQAFLELATEEAAITMVNYYS 72 (101)
T ss_dssp TCCHHHHHHTTTTTSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhc
Confidence 5899999999999999999999875 8999999999999999999774
No 365
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.42 E-value=3.8e-07 Score=74.09 Aligned_cols=49 Identities=24% Similarity=0.452 Sum_probs=45.5
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.+. +|||||+|.+.++|.+|+..+|+..+
T Consensus 22 ~~t~~~l~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~A~~~l~g~~~ 70 (96)
T 2kvi_A 22 NVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIECESQEMN 70 (96)
T ss_dssp CCCHHHHHHHHTTTCCCCEEEEE-------TTEEEEEESCHHHHHHHHHHHTCSSC
T ss_pred cCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCee
Confidence 58999999999999999999984 78999999999999999999998765
No 366
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.42 E-value=2.8e-07 Score=78.65 Aligned_cols=51 Identities=25% Similarity=0.473 Sum_probs=46.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.+. .++|||||+|.+.++|.+|+..+|+..+
T Consensus 48 ~~te~~L~~~F~~~G~I~~v~i~-----~~kg~aFV~f~~~~~A~~Ai~~lng~~~ 98 (121)
T 2bz2_A 48 DMTPTLLRGAFSPFGNIIDLSMD-----PPRNCAFVTYEKMESADQAVAELNGTQV 98 (121)
T ss_dssp SCCHHHHHHHHSTTCCCSCEEEE-----TTTTEEEEECSSHHHHHHHHHHHTTCBC
T ss_pred CCCHHHHHHHHHccCCEEEEEEe-----CCCCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 48999999999999999999996 4589999999999999999999988764
No 367
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.42 E-value=3.6e-07 Score=73.19 Aligned_cols=49 Identities=29% Similarity=0.561 Sum_probs=45.3
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++ +|||||+|.+.++|.+|+..+|+..+
T Consensus 19 ~~t~~~l~~~F~~~G~i~~v~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~ 67 (90)
T 2dnq_A 19 EATEQEIRSLFEQYGKVLECDII-------KNYGFVHIEDKTAAEDAIRNLHHYKL 67 (90)
T ss_dssp SCCHHHHHHHHHTSSCEEEEEEE-------TTEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCHHHHHHHHHhCCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHhcCCcc
Confidence 58999999999999999999997 68999999999999999999988654
No 368
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.41 E-value=3.7e-07 Score=78.52 Aligned_cols=52 Identities=17% Similarity=0.220 Sum_probs=46.6
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccce-EEEEecchHHHHHHHHhcCCCccc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKSNKKPYK 157 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~-gFV~F~s~e~A~~Ai~~ln~riy~ 157 (451)
.+++++|+++|++||.|.++.++.. .|| |||+|.+.++|..|+..|||+.+.
T Consensus 36 ~vt~~~L~~~Fs~yG~V~~v~i~~~-----~Gf~aFVef~~~~~A~~A~~~LnG~~i~ 88 (124)
T 2e5i_A 36 PITVDVLYTVCNPVGKVQRIVIFKR-----NGIQAMVEFESVLCAQKAKAALNGADIY 88 (124)
T ss_dssp CCCHHHHHHHHTTTSCEEEEEEEES-----SSEEEEEEESSHHHHHHHHHHHTTCCCB
T ss_pred CCCHHHHHHHHHhcCCEEEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCEec
Confidence 5899999999999999999999763 386 999999999999999999987653
No 369
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=2.9e-07 Score=77.22 Aligned_cols=51 Identities=14% Similarity=0.247 Sum_probs=45.3
Q ss_pred cHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
++++|+++|++||.|.++.+ .++ .++|||||+|.+.++|.+|+..+|++.+
T Consensus 39 ~e~~l~~~f~~~G~v~~v~i-~~~--~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 39 IREDLRVECSKFGQIRKLLL-FDR--HPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp HHHHHHHHGGGTSCCSEEEE-ETT--CTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred HHHHHHHHHHccCCEeEEEE-ecC--CCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 56899999999999999966 443 3799999999999999999999998765
No 370
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.40 E-value=3.2e-07 Score=74.64 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=46.4
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|. +.++.+ .++|||||+|.+.++|.+|+..+|+..+
T Consensus 30 ~~t~~~l~~~F~~~G~v~-~~~~~~---~~~g~afV~f~~~~~a~~A~~~l~g~~~ 81 (97)
T 2e5j_A 30 DARVSDLKRALRELGSVP-LRLTWQ---GPRRRAFLHYPDSAAAQQAVSCLQGLRL 81 (97)
T ss_dssp TCCHHHHHHHHHHTTCCC-SEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCCS
T ss_pred cCcHHHHHHHHHhcCCEE-EEEEcC---CCCcEEEEEECCHHHHHHHHHHhCCCEE
Confidence 589999999999999997 677654 6799999999999999999999998765
No 371
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.40 E-value=6.2e-08 Score=79.38 Aligned_cols=54 Identities=13% Similarity=0.135 Sum_probs=47.3
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.. .++.+ .+|+++|||||+|.+.++|.+|+. +|+..+
T Consensus 28 ~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~ 82 (101)
T 1fj7_A 28 NKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKV 82 (101)
T ss_dssp TSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCB
T ss_pred CCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEE
Confidence 5899999999999999988 55444 578899999999999999999998 987654
No 372
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.40 E-value=1.7e-07 Score=79.24 Aligned_cols=47 Identities=19% Similarity=0.265 Sum_probs=43.6
Q ss_pred CcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCC
Q psy300 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 102 ~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
+++++|+++|++||.|.++.++++ +|||||+|.+.++|..|+..+++
T Consensus 38 ~te~~L~~lF~~fG~V~~v~i~~~-----kg~aFVef~~~~~A~~Ai~~l~~ 84 (112)
T 1x4f_A 38 YSDSAVLKLAEPYGKIKNYILMRM-----KSQAFIEMETREDAMAMVDHCLK 84 (112)
T ss_dssp CCSHHHHTTTTTTSCCSEEEEETT-----TTEEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhcCCEEEEEEecC-----CCEEEEEECCHHHHHHHHHHhcc
Confidence 899999999999999999999853 89999999999999999998864
No 373
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.40 E-value=3.4e-07 Score=84.53 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=52.3
Q ss_pred CccCCC----CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCC
Q psy300 95 KKPYKG----KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ 153 (451)
.++|.| .+|+++|+++|++||.|.+++++++.++.++|||||+|.+.++|.+|+..++.
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~~~ 172 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETPGQ 172 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCTTC
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhCCC
Confidence 345544 58999999999999999999999998899999999999999999999987654
No 374
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.40 E-value=9.7e-08 Score=77.42 Aligned_cols=54 Identities=28% Similarity=0.530 Sum_probs=48.6
Q ss_pred CCcHHHHH----HHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFK----EHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~----~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+ ++|++||.|.++.+++ +|.++|||||+|.+.++|.+|+..+|+..+
T Consensus 19 ~~~~~~l~~~l~~~f~~~G~i~~v~i~~--~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (97)
T 1nu4_A 19 KIKKDELKKSLHAIFSRFGQILDILVSR--SLKMRGQAFVIFKEVSSATNALRSMQGFPF 76 (97)
T ss_dssp TSCHHHHHHHHHHHHGGGSCEEEEECCH--HHHHTTCEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEEEEc--CCCcCcEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 57999999 9999999999998874 467899999999999999999999988654
No 375
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.40 E-value=2.8e-07 Score=76.96 Aligned_cols=55 Identities=27% Similarity=0.579 Sum_probs=48.7
Q ss_pred CccCCC----CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 95 KKPYKG----KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 95 g~~f~G----~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++|.| .+++++|+++|++||.|..+.++ +|||||+|.+.++|.+|+..+|+..+
T Consensus 32 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------kg~afV~f~~~~~A~~Ai~~l~g~~~ 90 (108)
T 2jvo_A 32 TRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------NGFAFVEFEEAESAAKAIEEVHGKSF 90 (108)
T ss_dssp SEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------TTEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred CEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 345555 47999999999999999999998 78999999999999999999998765
No 376
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.39 E-value=2.8e-07 Score=76.65 Aligned_cols=51 Identities=24% Similarity=0.555 Sum_probs=47.4
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.++++ +|||||+|.+.++|.+|+..+++..+
T Consensus 36 ~~t~~~l~~~F~~~G~i~~v~i~~~-----~g~afV~f~~~~~a~~A~~~l~g~~~ 86 (109)
T 1x4g_A 36 GLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAIVSVNGTTI 86 (109)
T ss_dssp CCCHHHHHHHHHHHSCEEEEEEETT-----TTEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeCC-----CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 5799999999999999999999986 89999999999999999999988654
No 377
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.39 E-value=3.9e-07 Score=74.41 Aligned_cols=49 Identities=24% Similarity=0.466 Sum_probs=45.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.+. +|||||+|.+.++|.+|+..+|+..+
T Consensus 34 ~~t~~~L~~~F~~~G~v~~v~i~-------~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (97)
T 2xnq_A 34 NVSKEDLFRIFSPYGHIMQINIK-------NAFGFIQFDNPQSVRDAIEXESQEMN 82 (97)
T ss_dssp CCCHHHHHHHHGGGSCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHHHhcCCEEEEEEe-------CCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 57999999999999999999983 79999999999999999999988764
No 378
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=98.36 E-value=3.3e-07 Score=73.80 Aligned_cols=42 Identities=29% Similarity=0.615 Sum_probs=38.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHH
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVK 146 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~ 146 (451)
++|+++|+++|++||.|.++.++++ ++|||||+|.+.++|.+
T Consensus 22 ~~te~~L~~~F~~~G~i~~v~i~~~----srGfaFV~F~~~~~A~~ 63 (89)
T 3d2w_A 22 DMTAEELQQFFCQYGEVVDVFIPKP----FRAFAFVTFADDKVAQS 63 (89)
T ss_dssp TCCHHHHHHHHTTTSCEEEEECCSS----CCSEEEEEESCHHHHHH
T ss_pred CCCHHHHHHHHhccCCEEEEEEeeC----CCCEEEEEECCHHHHHH
Confidence 5899999999999999999999875 79999999999999884
No 379
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.35 E-value=2e-07 Score=75.52 Aligned_cols=52 Identities=31% Similarity=0.427 Sum_probs=46.2
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|.+|+..+++..+
T Consensus 27 ~~t~~~l~~~F~~~g~v~~~----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~ 78 (96)
T 1fjc_A 27 NITEDELKEVFEDALEIRLV----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEI 78 (96)
T ss_dssp SCCHHHHHHHHCSEEEECCE----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEE
T ss_pred CCCHHHHHHHHhhCCcEEEe----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEE
Confidence 58999999999999998776 45678999999999999999999999987654
No 380
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.34 E-value=3e-07 Score=80.23 Aligned_cols=56 Identities=29% Similarity=0.481 Sum_probs=47.8
Q ss_pred CCcHHHHHHHhcccCcceee------EEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDA------QLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v------~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.|..+ .+....+|+++|||||+|.+.++|.+|+..+|+..+
T Consensus 56 ~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 56 HVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp TCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 58999999999999999886 122224788999999999999999999999988764
No 381
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=98.33 E-value=4.3e-07 Score=82.16 Aligned_cols=47 Identities=30% Similarity=0.418 Sum_probs=37.3
Q ss_pred ccCCccCCCccccCCCCEEEEEEeecCCCccceeeeccccceEEEEEeeCCCCchh
Q psy300 384 LISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGNAMEMRLYLVCFNLPSPLGY 439 (451)
Q Consensus 384 ~~s~~hd~~l~~~~~~~~~~~~~e~p~~~~~k~e~~~~~~~~~~~~~~~~~~~~~~ 439 (451)
.||++|++| ..|||||||||||++|||+.++. +...+-.+|.+++.|
T Consensus 2 ~i~~g~~~p-------~~~nvvIEIP~gs~~KyE~dk~~--g~l~~DR~l~~~~~Y 48 (173)
T 1qez_A 2 KLSPGKNAP-------DVVNVLVEIPQGSNIKYEYDDEE--GVIKVDRVLYTSMNY 48 (173)
T ss_dssp CCCSCTTTT-------TSEEEEEEECTTCCEEEEEETTT--TEEEEEEECSSSBCC
T ss_pred CcCCCCCCC-------CeEEEEEEECCCCCeEEEEecCC--CCEEEEeecCCCCcC
Confidence 368888877 57999999999999999999975 444455667777665
No 382
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.32 E-value=5e-07 Score=75.21 Aligned_cols=55 Identities=24% Similarity=0.526 Sum_probs=48.4
Q ss_pred CccCCC----C-CcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 95 KKPYKG----K-ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 95 g~~f~G----~-~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.++|.+ . +++++|+++|++||.|..+.+ ++|||||+|.+.++|.+|+..+|+..+
T Consensus 28 ~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------~~g~afV~f~~~~~A~~A~~~l~g~~~ 87 (110)
T 1wf1_A 28 SRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------HKGYAFVQYSNERHARAAVLGENGRVL 87 (110)
T ss_dssp SEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------ETTEEEEECSSSHHHHHHHHHHTTCEE
T ss_pred cEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------eCCEEEEEECCHHHHHHHHHHcCCCEE
Confidence 445555 4 899999999999999999998 489999999999999999999988664
No 383
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.29 E-value=4.6e-07 Score=86.60 Aligned_cols=50 Identities=22% Similarity=0.386 Sum_probs=46.6
Q ss_pred cHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCccc
Q psy300 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 157 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~ 157 (451)
++++|+++|++||.|++++++.+ +|||||+|.+.++|..|+..|+++.++
T Consensus 156 tEe~L~~~F~~fG~I~~v~v~~~-----kG~AFV~F~~~~~Ae~A~~am~g~~l~ 205 (240)
T 3u1l_A 156 IESRIRFVFSRLGDIDRIRYVES-----KNCGFVKFKYQANAEFAKEAMSNQTLL 205 (240)
T ss_dssp HHHHHHHHHHTTSCEEEEEEEGG-----GTEEEEEESSHHHHHHHHHHHTTCCCC
T ss_pred cHHHHHHHHHccCCEEEEEEECC-----CCEEEEEeCCHHHHHHHHHHhCCCEEe
Confidence 69999999999999999999864 899999999999999999999998763
No 384
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.23 E-value=8.6e-07 Score=72.86 Aligned_cols=49 Identities=33% Similarity=0.518 Sum_probs=44.6
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|+++|+++|++||.|..+.++ +|||||+|.+.++|.+|+..+|+..+
T Consensus 22 ~~t~~~l~~~F~~~G~i~~v~~~-------~~~afV~f~~~~~a~~A~~~l~g~~~ 70 (103)
T 2dgu_A 22 TVTEEILEKAFSQFGKLERVKKL-------KDYAFIHFDERDGAVKAMEEMNGKDL 70 (103)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEEC-------SSCEEEEESSHHHHHHHHHHHTTEEE
T ss_pred CCCHHHHHHHHHhcCCEEEEEEE-------CCEEEEEeCCHHHHHHHHHHHCCCcc
Confidence 57999999999999999999987 46999999999999999999987654
No 385
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.23 E-value=1.1e-06 Score=69.47 Aligned_cols=50 Identities=20% Similarity=0.389 Sum_probs=45.4
Q ss_pred CCcHHHHHHHhccc----C-------cceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQY----G-------DIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~f----G-------~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ .+|+..+
T Consensus 17 ~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-----kg~afV~f~~~~~a~~A~-~l~g~~~ 77 (87)
T 2hzc_A 17 GITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-----KNFAFLEFRSVDETTQAM-AFDGIIF 77 (87)
T ss_dssp TCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-----SSEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred CCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-----CcEEEEEcCCHHHHHHHH-hcCCCEE
Confidence 57999999999999 8 8999988865 899999999999999999 9988764
No 386
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.22 E-value=8.9e-07 Score=70.68 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=45.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++| .|.++.+. +++|||||+|.+.++|.+|+..+|+..+
T Consensus 16 ~~t~~~l~~~F~~~-~v~~~~i~-----~~~g~afV~f~~~~~a~~Ai~~l~g~~~ 65 (88)
T 1wg1_A 16 DSNCQEVHDLLKDY-DLKYCYVD-----RNKRTAFVTLLNGEQAQNAIQMFHQYSF 65 (88)
T ss_dssp SCCHHHHHHHTCSS-CCCCEEEE-----GGGTEEEECCSCHHHHHHHHHHHTTEEE
T ss_pred CCCHHHHHHHHhhC-CeEEEEEe-----CCCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 58999999999999 99999985 5699999999999999999999988764
No 387
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.21 E-value=1.3e-06 Score=70.18 Aligned_cols=49 Identities=24% Similarity=0.533 Sum_probs=44.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.+++ +||||+|.+.++|.+|+..+|+..+
T Consensus 21 ~~t~~~l~~~F~~~G~v~~v~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~ 69 (92)
T 2dgt_A 21 TCTNQELRAKFEEYGPVIECDIVK-------DYAFVHMERAEDAVEAIRGLDNTEF 69 (92)
T ss_dssp SCCHHHHHHHHHTTSCCCEEEECS-------SEEEEEESCHHHHHHHHHHHTTEEE
T ss_pred CCCHHHHHHHHHhcCCeEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCee
Confidence 579999999999999999999974 4999999999999999999988654
No 388
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=1.5e-06 Score=70.95 Aligned_cols=53 Identities=26% Similarity=0.390 Sum_probs=46.2
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC-CCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d-~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|+.|+ .+.++.+ .+++++|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 79 (102)
T 2fc8_A 26 DTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEI 79 (102)
T ss_dssp TCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeE
Confidence 579999999999874 6677776 5788999999999999999999999988654
No 389
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.20 E-value=1.3e-06 Score=69.87 Aligned_cols=49 Identities=24% Similarity=0.422 Sum_probs=44.8
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++.+++ +||||+|.+.++|.+|+..+|+..+
T Consensus 20 ~~t~~~l~~~F~~~G~v~~~~~~~-------~~afV~f~~~~~a~~A~~~l~g~~~ 68 (90)
T 2dnp_A 20 ACTSQELRSLFERRGRVIECDVVK-------DYAFVHMEKEADAKAAIAQLNGKEV 68 (90)
T ss_dssp TCCHHHHHHHHHHHSCEEEEEECS-------SCEEEEESCHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHcCCCEEEEEEEC-------CEEEEEECCHHHHHHHHHHhCCCEE
Confidence 579999999999999999999974 4999999999999999999988654
No 390
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.19 E-value=8.9e-07 Score=71.21 Aligned_cols=50 Identities=22% Similarity=0.408 Sum_probs=43.3
Q ss_pred CCcHHHHHHHhcccCc-ceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCC-Ccc
Q psy300 101 KITEEEFKEHFGQYGD-IIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK-KPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~-V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~-riy 156 (451)
.+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..+|+ ..+
T Consensus 19 ~~t~~~l~~~F~~~G~vv~~~~~~------~~g~afV~f~~~~~A~~A~~~l~g~~~~ 70 (93)
T 2cqh_A 19 AVTADDLRQLFGDRKLPLAGQVLL------KSGYAFVDYPDQNWAIRAIETLSGKVEL 70 (93)
T ss_dssp TCCHHHHHHHHHHTTCCCSSCEEE------ETTEEEECCSCHHHHHHHHHHHTTTCEE
T ss_pred CCCHHHHHHHHHHcCCceEEEEEc------CCCEEEEEECCHHHHHHHHHHccCCeeE
Confidence 5799999999999999 6666663 489999999999999999999988 443
No 391
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.18 E-value=2.6e-06 Score=79.78 Aligned_cols=58 Identities=21% Similarity=0.315 Sum_probs=52.5
Q ss_pred CCHHHHHHHhccCCCeEEEEEeECC-----CCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 44 ITEEEFKEHFGQYGDIIDAQLLKNA-----DGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 44 vte~~L~~~F~~~G~I~~i~l~~d~-----tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
-.+++|++.|++||.|.++.+.++. +++++|++||+|.+.++|.+|+..|||+.|.|+
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr 203 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGR 203 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCe
Confidence 4567899999999999999998653 458999999999999999999999999999986
No 392
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.18 E-value=1.1e-06 Score=88.28 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=47.5
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~ 158 (451)
++|+++|+++|++||.|.++.+.. +||||||+|++.++|.+|+..|||+....
T Consensus 31 ~~te~~L~~~F~~~G~V~~v~~~~-----~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~ 83 (345)
T 3tht_A 31 GVSRNQLLPVLEKCGLVDALLMPP-----NKPYSFARYRTTEESKRAYVTLNGKEVVD 83 (345)
T ss_dssp TCCHHHHHHHHHTTSCEEEEECCT-----TCSEEEEEESSHHHHHHHHHHTTTCEEEC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeC-----CCCEEEEEECCHHHHHHHHHHhCCCcccc
Confidence 389999999999999999887754 48999999999999999999999987643
No 393
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.15 E-value=2.9e-06 Score=68.40 Aligned_cols=51 Identities=8% Similarity=0.252 Sum_probs=42.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.++ +....+++ ||||+|.+.++|.+|+. +|+..+
T Consensus 19 ~~t~~~l~~~F~~~G~v~~v-~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~ 69 (94)
T 2e5g_A 19 GVDSAQLSEYFLAFGPVASV-VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSL 69 (94)
T ss_dssp TCCHHHHHHHGGGTSCEEEE-EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEE
T ss_pred CCCHHHHHHHHHhcCCeEEE-EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEE
Confidence 58999999999999999987 33223443 99999999999999999 987654
No 394
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=2.8e-06 Score=68.53 Aligned_cols=53 Identities=19% Similarity=0.210 Sum_probs=45.8
Q ss_pred CCcHHHHHHHhcccCcceeeE-EeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQYGDIIDAQ-LLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~-v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++||.|.+++ ++.++. .|.|||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~F~~~G~v~~~~~i~~~~~---~~~afV~f~~~~~a~~Ai~~l~g~~~ 79 (96)
T 2e44_A 26 HLQWEVLDSLLVQYGVVESCEQVNTDSE---TAVVNVTYSSKDQARQALDKLNGFQL 79 (96)
T ss_dssp SSCHHHHHHHHHHHSCEEEEEEECCSSS---SEEEEEEESSHHHHHHHHHHHTTCBC
T ss_pred CCCHHHHHHHHHhcCCeEEEEEeecCCC---CCEEEEEECCHHHHHHHHHHhCCCEE
Confidence 589999999999999999995 777632 34499999999999999999998764
No 395
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.13 E-value=2.5e-06 Score=79.88 Aligned_cols=55 Identities=20% Similarity=0.279 Sum_probs=49.9
Q ss_pred CcHHHHHHHhcccCcceeeEEeeCC-----CCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 102 ITEEEFKEHFGQYGDIIDAQLLKNA-----DGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 102 ~tee~L~~~F~~fG~V~~v~v~~d~-----~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
-.+++|++.|++||.|.++.++++. +++++|++||+|.+.++|.+|+..|||+.|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 4678999999999999999998652 448999999999999999999999999988
No 396
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.13 E-value=2.5e-06 Score=69.45 Aligned_cols=49 Identities=22% Similarity=0.424 Sum_probs=44.1
Q ss_pred CCcHHHHHHHhccc--CcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 101 KITEEEFKEHFGQY--GDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 101 ~~tee~L~~~F~~f--G~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+..+|+..+
T Consensus 26 ~~t~~~l~~~F~~~g~g~v~~~~~~-------~g~afV~f~~~~~A~~A~~~l~g~~~ 76 (99)
T 2cpd_A 26 STSEEMIEKEFNNIKPGAVERVKKI-------RDYAFVHFSNREDAVEAMKALNGKVL 76 (99)
T ss_dssp TCCHHHHHHHHHTTSTTCEEEEEEC-------SSEEEEEESSHHHHHHHHHHHSSEEE
T ss_pred CCCHHHHHHHHHhcCCcceEEEEEe-------CCeEEEEeCCHHHHHHHHHHhCCCEe
Confidence 58999999999999 889888764 67999999999999999999988754
No 397
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.12 E-value=1.2e-06 Score=69.77 Aligned_cols=43 Identities=33% Similarity=0.661 Sum_probs=39.1
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHH
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 147 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~A 147 (451)
.+++++|+++|++||.|.++.++++ ++|||||+|.+.++|.+|
T Consensus 16 ~~te~~l~~~F~~~G~i~~v~i~~~----~~g~afV~f~~~~~a~~~ 58 (88)
T 1wf0_A 16 DMTEDELREFFSQYGDVMDVFIPKP----FRAFAFVTFADDQIAQSL 58 (88)
T ss_dssp SSCHHHHHHHSTTTSCCCEEECCSS----CCSCCEEECSCHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCeeEEEEecC----CCCEEEEEECCHHHHHHH
Confidence 5899999999999999999999875 689999999999999754
No 398
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.06 E-value=4.6e-06 Score=67.44 Aligned_cols=64 Identities=14% Similarity=0.338 Sum_probs=53.7
Q ss_pred CCCCceEEEcCCC----CCCCH----HHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLP----FKITE----EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp----~~vte----~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.++..||+|.-.| .++-. .+|.+.|++||.|..++++.+. +||+|.+.++|.+|++ |||..+.|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v~G 75 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKELLN 75 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEETT
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEeCC
Confidence 3567899998776 24444 6789999999999999998762 8999999999999998 99987776
No 399
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.04 E-value=5.9e-06 Score=67.41 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=41.3
Q ss_pred CCcHHH----HHHHhcccC-cceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcccC
Q psy300 101 KITEEE----FKEHFGQYG-DIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158 (451)
Q Consensus 101 ~~tee~----L~~~F~~fG-~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~~ 158 (451)
++++++ |+++|++|| .|.++ ++ |+|||+|.+.++|.+|+..|++..+++
T Consensus 20 ~~~~~~lk~~L~~lF~~yGG~Vl~V------tg---G~AfV~F~~~esA~~A~~~l~G~~l~g 73 (96)
T 2diu_A 20 NKDGKSVSNRLRRLSDNCGGKVLSI------TG---CSAILRFINQDSAERAQKRMENEDVFG 73 (96)
T ss_dssp TSCHHHHHHHHHHHHHTTTCCEEEC------CT---TCEEEEESSHHHHHHHHHHHTTCCSSS
T ss_pred cCCHHHHHHHHHHHHHHcCCeeEEE------ec---CEEEEEECCHHHHHHHHHHhcCCccCC
Confidence 466666 668999995 99988 23 999999999999999999999987654
No 400
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.76 E-value=9.3e-06 Score=66.01 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=55.3
Q ss_pred CCCCCceEEEcCCCCC-----CCH----HHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccC
Q psy300 28 DKTKRGRLFIKNLPFK-----ITE----EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 98 (451)
Q Consensus 28 ~~~~~~~lfVgnLp~~-----vte----~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f 98 (451)
-.++..||+|.-++.+ +-. .+|.+.|++||.|..+++..++ +||+|.+.++|.+|++ |+|..+
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeee
Confidence 3567889999988743 323 4689999999999999999772 9999999999999998 999888
Q ss_pred CCC
Q psy300 99 KGK 101 (451)
Q Consensus 99 ~G~ 101 (451)
.|+
T Consensus 83 ~Gr 85 (95)
T 1ufw_A 83 KGR 85 (95)
T ss_dssp TTE
T ss_pred CCe
Confidence 774
No 401
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.30 E-value=0.00022 Score=60.77 Aligned_cols=46 Identities=20% Similarity=0.288 Sum_probs=41.7
Q ss_pred CcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecc-hHHHHHHHHhcC
Q psy300 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYAN-KISAVKAILKSN 152 (451)
Q Consensus 102 ~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s-~e~A~~Ai~~ln 152 (451)
+++++|+++|++||.|.+|.+.+++. .|||+|.+ .++|..|+.++|
T Consensus 31 ~sredLke~F~~~G~V~~Vd~~~g~~-----tgfVrf~~~~~~A~~av~~ln 77 (121)
T 1owx_A 31 TCREDLHILFSNHGEIKWIDFVRGAK-----EGIILFKEKAKEALGKAKDAN 77 (121)
T ss_dssp CCHHHHHHHTCSSCCEEEEECCTTCS-----EEEEEESSCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHhcCCEEEEEEecCCC-----EEEEEECCChHHHHHHHHHhh
Confidence 79999999999999999999998743 59999999 789999999885
No 402
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.29 E-value=0.00018 Score=58.01 Aligned_cols=44 Identities=18% Similarity=0.446 Sum_probs=39.8
Q ss_pred HHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 105 EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 105 e~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|.+.|++||.|..+++..++ +||+|.+.++|.+|+. ||+..+
T Consensus 30 ~~L~~~F~~~G~Vi~vr~~~d~-------~fVtF~d~~sAlaAi~-mnG~~v 73 (91)
T 2dnr_A 30 DELLQQFASFGEVILIRFVEDK-------MWVTFLEGSSALNVLS-LNGKEL 73 (91)
T ss_dssp HHHHHHHHTTCCEEEEEECSSS-------EEEEESSHHHHHHGGG-GTTCEE
T ss_pred HHHHHHHHhCCCeEEEEEecCC-------EEEEECChHHHHHHHh-cCCeEe
Confidence 6799999999999999999873 8999999999999998 998765
No 403
>1sxv_A Inorganic pyrophosphatase; structural genomics, ppase,, hydrolase; 1.30A {Mycobacterium tuberculosis} PDB: 1wcf_A 2uxs_A 4ecp_A
Probab=97.24 E-value=7.2e-05 Score=67.42 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=19.6
Q ss_pred CEEEEEEeecCCCccceeeeccc
Q psy300 400 KIFNMVVEIPRWTNAKMEVGNAM 422 (451)
Q Consensus 400 ~~~~~~~e~p~~~~~k~e~~~~~ 422 (451)
-.|||||||||||++|+|+.++.
T Consensus 11 ~~~nvvIEIP~gs~~KyE~Dk~~ 33 (172)
T 1sxv_A 11 MQFDVTIEIPKGQRNKYEVDHET 33 (172)
T ss_dssp CCEEEEEEECTTCCEEC-CCTTT
T ss_pred eEEEEEEEECCCCCeEEEEEcCC
Confidence 57999999999999999997653
No 404
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=96.98 E-value=0.00037 Score=56.55 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=40.0
Q ss_pred HHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 105 EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 105 e~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.+|.+.|++||.|..+++..++ +||+|.+.++|.+|+. ||+..+
T Consensus 39 ~~L~~~F~~~G~Vilvr~v~d~-------~fVtF~d~~sAl~AI~-ldG~~v 82 (95)
T 1ufw_A 39 TELMQTLGSYGTIVLVRINQGQ-------MLVTFADSHSALSVLD-VDGMKV 82 (95)
T ss_dssp HHHHHHHHHHSCCSEEEEETTE-------EEEECSCSHHHHHHHH-GGGSEE
T ss_pred HHHHHHHHHCCCEEEEEEecCc-------EEEEEcChHHHHHHHh-cCCeee
Confidence 5699999999999999999873 8999999999999998 988765
No 405
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=96.95 E-value=0.0017 Score=54.03 Aligned_cols=77 Identities=18% Similarity=0.182 Sum_probs=65.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccC-----CCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC--
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQY-----GDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK-- 101 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~-----G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~-- 101 (451)
....++|=+=|||..+++..|+.+.+.+ |.+..+.+..| -|-|+|+|.+...|-+|.-+++|..|.|+
T Consensus 18 ~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef~gr~L 92 (117)
T 2l9w_A 18 KELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQFQGKVI 92 (117)
T ss_dssp TTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEETTEEE
T ss_pred ccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeeecCeEE
Confidence 3356788889999999999999999999 99999999877 44599999999999999999999999985
Q ss_pred --CcHHHHHHH
Q psy300 102 --ITEEEFKEH 110 (451)
Q Consensus 102 --~tee~L~~~ 110 (451)
.|-.+|...
T Consensus 93 r~gTv~eL~~~ 103 (117)
T 2l9w_A 93 RSGTINDMKRY 103 (117)
T ss_dssp EEECHHHHHHH
T ss_pred EecCHHHHHhc
Confidence 355555544
No 406
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.35 E-value=0.013 Score=47.23 Aligned_cols=68 Identities=16% Similarity=0.259 Sum_probs=56.3
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC-C-CC-ceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-D-GK-LKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~-t-g~-skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
++|-|++||+++|++++.+.++....+.....+... + +. .-+-|+|.|.+.+++..-.+.++|..|..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 578999999999999999999999887777776654 2 22 23569999999999999999999988874
No 407
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=96.12 E-value=0.015 Score=47.32 Aligned_cols=56 Identities=14% Similarity=0.336 Sum_probs=46.2
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~ln 94 (451)
-..-+++ ++|+.+...||..+|+.||.| .|+.+.| ..|||.|.+++.|..|+..+.
T Consensus 15 r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 15 RDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 3344555 999999999999999999954 5777765 369999999999999998664
No 408
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=95.86 E-value=0.014 Score=47.61 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=45.3
Q ss_pred eEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcC
Q psy300 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94 (451)
Q Consensus 34 ~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~ln 94 (451)
-+++ ++|+.+...||..+|+.|| -..|+.+-| ..|||.|.+++.|..|+..+.
T Consensus 8 V~~l-~FP~ewKt~Di~~lFs~fg-gv~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 8 VLHV-TFPKEWKTSDLYQLFSAFG-NIQISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred EEEE-eCChhhhhHHHHHHHhccC-CEEEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 3445 9999999999999999999 456888766 369999999999999998765
No 409
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.80 E-value=0.17 Score=41.52 Aligned_cols=57 Identities=16% Similarity=0.252 Sum_probs=48.2
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhcc-----CCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHh
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQ-----YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~-----~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~ 92 (451)
.....+|.|.|||.++.++.|.-+|+. =|+|.++.... +-|+|+|.+.+.|++.++.
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k 66 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQ 66 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTC
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcC
Confidence 446789999999999999999999986 25788887742 4689999999999999876
No 410
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=93.94 E-value=0.065 Score=44.05 Aligned_cols=66 Identities=26% Similarity=0.290 Sum_probs=53.7
Q ss_pred CCceEEEcCCCCCC-CH----HHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCCC
Q psy300 31 KRGRLFIKNLPFKI-TE----EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGK 101 (451)
Q Consensus 31 ~~~~lfVgnLp~~v-te----~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G~ 101 (451)
-.++|+|.||+.++ .. +.++.+|.+|+++.+....+. =+-.-|.|.++++|.+|...|++..|.|+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~g~ 74 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFLGK 74 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEETTE
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceecCc
Confidence 45789999998765 22 567999999999988877754 22367999999999999999999988874
No 411
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.53 E-value=0.054 Score=44.02 Aligned_cols=70 Identities=13% Similarity=0.089 Sum_probs=49.1
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECC--CCCc-eeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA--DGKL-KGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~--tg~s-kG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
.+-+|-|+.||+.+|++++.+.++..-++.....+... .+.+ -+-|||.|.+.++...-.+.++|..|..
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 34589999999999999987777765443322222222 1211 2458999999999888888888887764
No 412
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=93.37 E-value=0.14 Score=43.07 Aligned_cols=65 Identities=20% Similarity=0.297 Sum_probs=51.9
Q ss_pred CCCCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcCCccCCC
Q psy300 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 100 (451)
Q Consensus 29 ~~~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~lng~~f~G 100 (451)
....+-|-|-+.|+.. -..+...|++||.|.+.... + ...+-.|.|.++.+|++||.+ ||+.+.|
T Consensus 21 ~~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~---~--~~NWihI~Y~s~~~A~rAL~k-NG~ii~g 85 (119)
T 1wwh_A 21 HLDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS---N--TGNWMHIRYQSKLQARKALSK-DGRIFGE 85 (119)
T ss_dssp CGGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC---S--SSSEEEEEESSHHHHHHHHTT-TTCEETT
T ss_pred CCCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC---C--CCCeEEEEeCCHHHHHHHHHh-CCeEecC
Confidence 3456788888999884 67788999999999988762 2 245889999999999999975 7776655
No 413
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=91.78 E-value=0.075 Score=55.06 Aligned_cols=57 Identities=19% Similarity=0.241 Sum_probs=42.6
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHh
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~ 92 (451)
..++|||. .|..+++.+|.++|++||+|.++.+-.+ . .-|+.|+|.+.+++..++..
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~-~---g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES-F---GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS-S---SEEEEEECC---CCHHHHSS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc-C---CeEEEEEeCCHHHHHHHHhc
Confidence 46899998 7999999999999999999999887643 2 25999999999998877643
No 414
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=91.31 E-value=0.41 Score=39.72 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=47.5
Q ss_pred CCCCcHHHHHHHhccc-----CcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 99 KGKITEEEFKEHFGQY-----GDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 99 ~G~~tee~L~~~F~~f-----G~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
...+++..++.+.+++ |.+..+.+..| -|-|+|+|.+...|.+|...++|..|
T Consensus 30 pDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----H~GAivef~d~~~AgKasLaL~G~ef 87 (117)
T 2l9w_A 30 SDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----FNGAIIIFRDSKFAAKMLMILNGSQF 87 (117)
T ss_dssp CTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----TTEEEEECSCHHHHHHHHHHHSSEEE
T ss_pred CCCCCHHHHHHHHhhhhccCccceeEEEEecC-----CCceEEEEccchhhHHHHhhcCCeee
Confidence 4578999999999999 99999999887 34599999999999999999999876
No 415
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=88.44 E-value=0.53 Score=39.60 Aligned_cols=48 Identities=25% Similarity=0.405 Sum_probs=38.4
Q ss_pred cHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
.-..+...|++||.|.+..... ...+..|.|.++.+|.+|+.. |++++
T Consensus 36 ~~~~VL~~F~~~G~Iv~~~~~~-----~~NWihI~Y~s~~~A~rAL~k-NG~ii 83 (119)
T 1wwh_A 36 SASYILLQFAQYGNILKHVMSN-----TGNWMHIRYQSKLQARKALSK-DGRIF 83 (119)
T ss_dssp GHHHHHHHHHTTSCEEEEEECS-----SSSEEEEEESSHHHHHHHHTT-TTCEE
T ss_pred HHHHHHHHHHhhCcEEEeccCC-----CCCeEEEEeCCHHHHHHHHHh-CCeEe
Confidence 3467788999999999877621 257899999999999999966 66654
No 416
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=81.00 E-value=2.2 Score=34.89 Aligned_cols=56 Identities=25% Similarity=0.304 Sum_probs=44.5
Q ss_pred cCCCCCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCccc
Q psy300 97 PYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 157 (451)
Q Consensus 97 ~f~G~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~riy~ 157 (451)
+|...--.+.++++|..|+.+......+. =.-..|.|.+.++|.+|...+++..+.
T Consensus 17 vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS-----FRRirv~F~~~~~A~~AR~~Lh~~~f~ 72 (104)
T 1wey_A 17 VFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHKTEFL 72 (104)
T ss_dssp GGSTTTHHHHHHHHHHTTCSSCEEEEETT-----TTEEEEECSSTTHHHHHHHTSTTSEET
T ss_pred HcCCHHHHHHHHHHHHhhCcCcceeecCc-----ceEEEEEeCChHHHHHHHHHhccceec
Confidence 34433345789999999999998888875 224689999999999999999987663
No 417
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=79.44 E-value=1.9 Score=36.77 Aligned_cols=78 Identities=21% Similarity=0.332 Sum_probs=51.0
Q ss_pred CCceEEEcCCCCCCCHHHHHHHhccCCCeEE-EEEeECC-------------CC-CceeEEEEEEccHHHHHHHHHhcCC
Q psy300 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIID-AQLLKNA-------------DG-KLKGCGFINYANKISAVKAILKSNK 95 (451)
Q Consensus 31 ~~~~lfVgnLp~~vte~~L~~~F~~~G~I~~-i~l~~d~-------------tg-~skG~aFV~F~~~~~A~~Al~~lng 95 (451)
..+-|.|=+.|++. ...+.+.|++||.|.+ ....+.. .+ .....-.|+|.++.+|.+|+. .||
T Consensus 6 ~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG 83 (132)
T 3p3d_A 6 GELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENG 83 (132)
T ss_dssp --CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTT
T ss_pred CceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCC
Confidence 34567777887664 4567789999999876 2211100 00 124567999999999999986 577
Q ss_pred ccCCCC------CcHHHHHHH
Q psy300 96 KPYKGK------ITEEEFKEH 110 (451)
Q Consensus 96 ~~f~G~------~tee~L~~~ 110 (451)
++|.|. .+...+.++
T Consensus 84 ~ii~G~mIGV~Py~~~~ve~l 104 (132)
T 3p3d_A 84 AVFNGVLLGVIPYTKDAVERL 104 (132)
T ss_dssp CEETTEECEEEECCHHHHHHH
T ss_pred eEeCcEEEEEEECCHHHHHHH
Confidence 777663 466666655
No 418
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=75.72 E-value=11 Score=29.92 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=46.7
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCC--CC-CccceEEEEecchHHHHHHHHhcCCCcccC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNA--DG-KLKGCGFINYANKISAVKAILKSNKKPYKG 158 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~--~g-~srG~gFV~F~s~e~A~~Ai~~ln~riy~~ 158 (451)
++|++++.+.+.....+.....+... .+ .....|||.|.+.+++..-....+|..|..
T Consensus 12 ~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 12 TLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp TCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred CCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 58999999999998888777776542 11 234679999999999999999999988754
No 419
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=71.56 E-value=6.8 Score=40.84 Aligned_cols=54 Identities=15% Similarity=0.332 Sum_probs=44.1
Q ss_pred ceEEEcCCCCCCCHHHHHHHhccCCCeEEEEEeECCCCCceeEEEEEEccHHHHHHHHHhcC
Q psy300 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94 (451)
Q Consensus 33 ~~lfVgnLp~~vte~~L~~~F~~~G~I~~i~l~~d~tg~skG~aFV~F~~~~~A~~Al~~ln 94 (451)
..++|+ +|..+...+|.++|+.||. .+|+.+.+ ..|||.|.+.+.|..++..++
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~-v~V~widd------t~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGN-IQISWIDD------TSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCC-CEEEECSS------SEEEEECSCHHHHHHHHHHHT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCC-EEEEEEcC------CeEEEEECCHHHHHHHHHHHH
Confidence 456665 9999999999999999995 45665533 469999999999999998874
No 420
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=71.01 E-value=2 Score=44.33 Aligned_cols=47 Identities=19% Similarity=0.227 Sum_probs=34.4
Q ss_pred CCCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHh
Q psy300 100 GKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 150 (451)
Q Consensus 100 G~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ 150 (451)
..+++.+|.++|++||.|.++.+.++. .-|+.|+|.+.+++..++..
T Consensus 62 ~~~~~~~l~~y~~~~g~i~~~~~~~~~----g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 62 EKISENKFLKYLSQFGPINNHFFYESF----GLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp CC---CHHHHHHGGGSCCCCEEEECSS----SEEEEEECC---CCHHHHSS
T ss_pred CCCCHHHHHHHHHhcCCcceEEEEccC----CeEEEEEeCCHHHHHHHHhc
Confidence 368999999999999999999888752 36999999999998877544
No 421
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=69.14 E-value=9.2 Score=30.90 Aligned_cols=45 Identities=13% Similarity=0.324 Sum_probs=35.3
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
.+...||.++|+.||.| .++=+.| .-|||.|.+++.|..|+..+.
T Consensus 26 ewKt~DI~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 26 EWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp TCCHHHHHHHHTTTCSC-CCEEEET------TEEEEECSCHHHHHHHHHHHH
T ss_pred hhhhHHHHHHhhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 47789999999999953 3344444 259999999999999998763
No 422
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=67.66 E-value=8.7 Score=31.11 Aligned_cols=46 Identities=13% Similarity=0.307 Sum_probs=35.2
Q ss_pred CCCcHHHHHHHhcccCcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcC
Q psy300 100 GKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152 (451)
Q Consensus 100 G~~tee~L~~~F~~fG~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln 152 (451)
-.+...||.++|+.||.| .+.=+.| .-|||.|.+++.|..|+..+.
T Consensus 15 ~ewKt~Di~~lFs~fggv-~I~WidD------TsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 15 KEWKTSDLYQLFSAFGNI-QISWIDD------TSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp TTCCHHHHHHHTTTSEEE-EEEEEET------TEEEEEEEEECHHHHHHHHHT
T ss_pred hhhhhHHHHHHHhccCCE-EEEEEcC------CeEEEEecCHHHHHHHHHhcc
Confidence 356789999999999932 2333433 259999999999999998764
No 423
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=64.24 E-value=4.5 Score=34.49 Aligned_cols=53 Identities=25% Similarity=0.416 Sum_probs=36.4
Q ss_pred cHHHHHHHhcccCccee-eEEeeCCC---------C-----CccceEEEEecchHHHHHHHHhcCCCcc
Q psy300 103 TEEEFKEHFGQYGDIID-AQLLKNAD---------G-----KLKGCGFINYANKISAVKAILKSNKKPY 156 (451)
Q Consensus 103 tee~L~~~F~~fG~V~~-v~v~~d~~---------g-----~srG~gFV~F~s~e~A~~Ai~~ln~riy 156 (451)
....+.+.|++||.|.+ ....++.. . ...++..|+|.++.+|.+|+.. ||+++
T Consensus 19 ~~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-NG~ii 86 (132)
T 3p3d_A 19 MANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-NGAVF 86 (132)
T ss_dssp GHHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-TTCEE
T ss_pred HHHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-CCeEe
Confidence 45677889999999876 33222100 0 1246889999999999999854 56665
No 424
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.16 E-value=67 Score=26.05 Aligned_cols=48 Identities=15% Similarity=0.281 Sum_probs=36.4
Q ss_pred CCcHHHHHHHhcc---c--CcceeeEEeeCCCCCccceEEEEecchHHHHHHHHhcCCCc
Q psy300 101 KITEEEFKEHFGQ---Y--GDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155 (451)
Q Consensus 101 ~~tee~L~~~F~~---f--G~V~~v~v~~d~~g~srG~gFV~F~s~e~A~~Ai~~ln~ri 155 (451)
.+.++.|.-+|+. - |.|.++.... +-|+|+|.+.+.|++.+....+.+
T Consensus 19 ~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------~~AvItF~d~~va~rVL~k~~H~L 71 (104)
T 2dhx_A 19 AVPDELLTLYFENRRRSGGGPVLSWQRLG-------CGGVLTFREPADAERVLAQADHEL 71 (104)
T ss_dssp TSCHHHHHHHHHCTTTTCCCCEEEEEEET-------TEEEEEESSHHHHHHHHTCSCCBS
T ss_pred CCChhHheEEEeCCCcCCCceeeEEEEcC-------CcEEEEEcChHHHHHHhcCCccee
Confidence 5788899999986 2 4477766643 458999999999999887755543
No 425
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=26.01 E-value=70 Score=25.57 Aligned_cols=59 Identities=14% Similarity=0.080 Sum_probs=41.9
Q ss_pred CCcHHHHHHHhcccCcceeeEEeeC--CCCC-ccceEEEEecchHHHHHHHHhcCCCcccCC
Q psy300 101 KITEEEFKEHFGQYGDIIDAQLLKN--ADGK-LKGCGFINYANKISAVKAILKSNKKPYKGS 159 (451)
Q Consensus 101 ~~tee~L~~~F~~fG~V~~v~v~~d--~~g~-srG~gFV~F~s~e~A~~Ai~~ln~riy~~~ 159 (451)
.+|++++.+.++..-.+.....+.. ..+. .-..|||.|.+.++...-....+|..|...
T Consensus 20 ~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D~ 81 (97)
T 2l08_A 20 GLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLDS 81 (97)
T ss_dssp CSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEECT
T ss_pred CCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEeC
Confidence 5799998888877655544444332 1111 235789999999999999999999887543
No 426
>3isu_A RAS GTPase-activating-like protein iqgap3; structural genomics, structural genomics consortium (SGC), RGC domain, calmodulin-binding; 1.88A {Homo sapiens}
Probab=26.01 E-value=44 Score=27.89 Aligned_cols=41 Identities=20% Similarity=0.185 Sum_probs=32.0
Q ss_pred cCCCccceeee-ccccceEEEEEeeCCCCchhhhhh---hhhhhh
Q psy300 409 PRWTNAKMEVG-NAMEMRLYLVCFNLPSPLGYLQLN---LLQEQQ 449 (451)
Q Consensus 409 p~~~~~k~e~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 449 (451)
-+|.+-+++|+ ++++-..-+.+..+..|.+-.+|. |||-|.
T Consensus 47 ~~~~~v~f~Isss~e~GvF~I~~~~~gi~~~~~~L~ldDLLq~Qy 91 (121)
T 3isu_A 47 SHFRNVIFDITPGDEAGKFEVNAKFLGVDMERFQLHYQDLLQLQY 91 (121)
T ss_dssp GGGGGEEEEEEECSSTTEEEEEEEETTEECCCEEEEHHHHHHHHH
T ss_pred hccccEEEEEEeCCCCeEEEEEEEeCCceeeEEEeeHHHHHHHHH
Confidence 46899999999 788887777778888888887774 566654
Done!