Your job contains 1 sequence.
>psy300
MEKLAKKKKVKKEFKKKGKKKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDII
DAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGKITEEEFKEHFGQYGDIIDA
QLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSENGLISPFHDIPLYSNVKDKI
FNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWEN
PDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVND
PNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVLNTRVEGESSQGFIPGCRGR
TEQVVSSRLETPPLIGSSGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGN
AMEMRLYLVCFNLPSPLGYLQLNLLQEQQLN
The BLAST search returned 6 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy300
(451 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0016687 - symbol:Nurf-38 "Nucleosome remodeling fa... 748 4.0e-74 1
UNIPROTKB|F1NT28 - symbol:PPA1 "Uncharacterized protein" ... 692 3.5e-68 1
ZFIN|ZDB-GENE-050417-375 - symbol:ppa1b "pyrophosphatase ... 688 9.2e-68 1
CGD|CAL0006016 - symbol:IPP1 species:5476 "Candida albica... 684 2.4e-67 1
UNIPROTKB|P83777 - symbol:IPP1 "Inorganic pyrophosphatase... 684 2.4e-67 1
RGD|1589773 - symbol:Ppa1 "pyrophosphatase (inorganic) 1"... 684 2.4e-67 1
UNIPROTKB|F1SUE3 - symbol:PPA1 "Uncharacterized protein" ... 683 3.1e-67 1
MGI|MGI:97831 - symbol:Ppa1 "pyrophosphatase (inorganic) ... 683 3.1e-67 1
UNIPROTKB|F1PIJ6 - symbol:PPA1 "Uncharacterized protein" ... 682 4.0e-67 1
UNIPROTKB|Q2KIV7 - symbol:PPA2 "Pyrophosphatase (Inorgani... 679 8.2e-67 1
UNIPROTKB|Q15181 - symbol:PPA1 "Inorganic pyrophosphatase... 679 8.2e-67 1
UNIPROTKB|P37980 - symbol:PPA1 "Inorganic pyrophosphatase... 677 1.3e-66 1
SGD|S000000215 - symbol:IPP1 "Cytoplasmic inorganic pyrop... 676 1.7e-66 1
ZFIN|ZDB-GENE-040426-1695 - symbol:ppa1a "pyrophosphatase... 672 4.5e-66 1
ASPGD|ASPL0000034810 - symbol:ippA species:162425 "Emeric... 667 1.5e-65 1
UNIPROTKB|J9NSN3 - symbol:PPA2 "Uncharacterized protein" ... 666 2.0e-65 1
UNIPROTKB|E1C6X1 - symbol:PPA2 "Uncharacterized protein" ... 666 2.0e-65 1
WB|WBGene00008149 - symbol:pyp-1 species:6239 "Caenorhabd... 653 4.7e-64 1
ZFIN|ZDB-GENE-040426-1857 - symbol:ppa2 "pyrophosphatase ... 653 4.7e-64 1
POMBASE|SPAC23C11.05 - symbol:ipp1 "inorganic pyrophospha... 651 7.6e-64 1
UNIPROTKB|F1PXU2 - symbol:PPA2 "Uncharacterized protein" ... 634 4.8e-62 1
UNIPROTKB|Q9H2U2 - symbol:PPA2 "Inorganic pyrophosphatase... 629 1.6e-61 1
MGI|MGI:1922026 - symbol:Ppa2 "pyrophosphatase (inorganic... 627 2.7e-61 1
UNIPROTKB|J9P5Y0 - symbol:PPA1 "Uncharacterized protein" ... 619 1.9e-60 1
POMBASE|SPAC3A12.02 - symbol:SPAC3A12.02 "mitochondrial i... 618 2.4e-60 1
RGD|1307965 - symbol:Ppa2 "pyrophosphatase (inorganic) 2"... 615 5.0e-60 1
UNIPROTKB|E2QRM6 - symbol:PPA2 "Inorganic pyrophosphatase... 570 2.9e-55 1
UNIPROTKB|Q5SQT6 - symbol:PPA1 "Inorganic pyrophosphatase... 563 1.6e-54 1
CGD|CAL0005294 - symbol:orf19.4807 species:5476 "Candida ... 562 2.1e-54 1
UNIPROTKB|H0Y9D8 - symbol:PPA2 "Inorganic pyrophosphatase... 552 2.4e-53 1
SGD|S000004880 - symbol:PPA2 "Mitochondrial inorganic pyr... 515 2.0e-49 1
UNIPROTKB|Q93Y52 - symbol:ppa1 "Soluble inorganic pyropho... 509 8.5e-49 1
TAIR|locus:2144766 - symbol:PPa6 "pyrophosphorylase 6" sp... 499 9.8e-48 1
DICTYBASE|DDB_G0284265 - symbol:ppa1 "inorganic pyrophosp... 497 1.6e-47 1
UNIPROTKB|B4DFH3 - symbol:PPA2 "Inorganic pyrophosphatase... 492 5.4e-47 1
UNIPROTKB|D6RGV9 - symbol:PPA2 "Inorganic pyrophosphatase... 443 8.4e-42 1
UNIPROTKB|I3LM66 - symbol:PPA2 "Uncharacterized protein" ... 439 2.2e-41 1
ASPGD|ASPL0000059364 - symbol:AN0395 species:162425 "Emer... 419 2.9e-39 1
UNIPROTKB|D6R967 - symbol:PPA2 "Inorganic pyrophosphatase... 358 2.4e-37 2
UNIPROTKB|D6RGI1 - symbol:PPA2 "Inorganic pyrophosphatase... 312 6.4e-28 1
UNIPROTKB|H0YAK2 - symbol:PPA2 "Inorganic pyrophosphatase... 210 1.5e-16 1
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 156 3.8e-14 2
FB|FBgn0260456 - symbol:CG4806 species:7227 "Drosophila m... 180 1.0e-11 2
TAIR|locus:2084066 - symbol:PPa4 "pyrophosphorylase 4" sp... 130 4.9e-11 2
TAIR|locus:2062195 - symbol:PPa2 "pyrophosphorylase 2" sp... 124 1.0e-10 2
TAIR|locus:2116997 - symbol:PPa5 "pyrophosphorylase 5" sp... 124 2.5e-10 2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 134 4.0e-10 2
POMBASE|SPBC660.15 - symbol:SPBC660.15 "mRNA cleavage fac... 126 8.3e-10 2
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 169 2.1e-09 1
TAIR|locus:2168848 - symbol:AT5G40490 species:3702 "Arabi... 120 2.2e-09 2
UNIPROTKB|E2RIB8 - symbol:RBM28 "Uncharacterized protein"... 154 3.0e-09 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 120 4.0e-09 2
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 130 4.1e-09 2
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 125 4.4e-09 2
SGD|S000005483 - symbol:HRP1 "Subunit of cleavage factor ... 112 6.4e-09 3
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 116 7.5e-09 2
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 119 1.2e-08 2
CGD|CAL0003460 - symbol:orf19.5989 species:5476 "Candida ... 125 1.3e-08 2
UNIPROTKB|Q949J1 - symbol:ppa2 "Soluble inorganic pyropho... 115 1.9e-08 2
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 122 2.0e-08 2
UNIPROTKB|F1M2S4 - symbol:F1M2S4 "Uncharacterized protein... 116 2.2e-08 2
TAIR|locus:2122990 - symbol:AT4G19610 species:3702 "Arabi... 127 2.4e-08 2
DICTYBASE|DDB_G0285403 - symbol:DDB_G0285403 "RNA-binding... 111 2.6e-08 2
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 105 4.5e-08 2
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 125 7.9e-08 2
UNIPROTKB|E1BLD4 - symbol:RBM28 "Uncharacterized protein"... 144 7.9e-08 2
TIGR_CMR|ECH_1014 - symbol:ECH_1014 "inorganic pyrophosph... 130 8.6e-08 1
UNIPROTKB|F1M5N1 - symbol:F1M5N1 "Uncharacterized protein... 112 8.9e-08 2
TAIR|locus:2160437 - symbol:AT5G41690 species:3702 "Arabi... 118 9.3e-08 2
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 116 1.0e-07 2
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 111 1.2e-07 2
MGI|MGI:2655711 - symbol:Rbm28 "RNA binding motif protein... 153 1.5e-07 1
TAIR|locus:2077392 - symbol:AT3G07810 species:3702 "Arabi... 117 2.1e-07 2
UNIPROTKB|F1NIP6 - symbol:MYEF2 "Uncharacterized protein"... 118 2.4e-07 2
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 119 2.5e-07 2
TAIR|locus:4515103541 - symbol:AT5G08695 species:3702 "Ar... 137 2.5e-07 2
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 123 2.7e-07 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 126 2.8e-07 2
UNIPROTKB|D4A491 - symbol:D4A491 "Uncharacterized protein... 112 2.8e-07 2
UNIPROTKB|B4DHA8 - symbol:CELF4 "CUGBP Elav-like family m... 101 2.8e-07 2
UNIPROTKB|Q6K271 - symbol:P0415D04.46-1 "FCA" species:399... 104 2.8e-07 2
UNIPROTKB|Q6WQT6 - symbol:Q6WQT6 "Flowering time control ... 104 2.8e-07 2
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 124 2.9e-07 2
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 124 2.9e-07 2
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 119 2.9e-07 2
TAIR|locus:2037633 - symbol:RBP1 "RNA-binding protein 1" ... 109 3.0e-07 2
TAIR|locus:2133862 - symbol:AT4G26650 species:3702 "Arabi... 115 3.1e-07 3
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 126 3.1e-07 2
UNIPROTKB|Q4R535 - symbol:CELF4 "CUGBP Elav-like family m... 101 3.1e-07 2
UNIPROTKB|A6H776 - symbol:BRUNOL4 "Uncharacterized protei... 101 3.2e-07 2
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 101 3.2e-07 2
WB|WBGene00001340 - symbol:etr-1 species:6239 "Caenorhabd... 119 3.2e-07 2
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 119 3.3e-07 2
UNIPROTKB|Q5ZHY2 - symbol:MYEF2 "Uncharacterized protein"... 118 3.3e-07 2
UNIPROTKB|Q9BZC1 - symbol:CELF4 "CUGBP Elav-like family m... 101 3.4e-07 2
UNIPROTKB|Q5NVC8 - symbol:CELF4 "CUGBP Elav-like family m... 101 3.4e-07 2
MGI|MGI:1932407 - symbol:Celf4 "CUGBP, Elav-like family m... 101 3.4e-07 2
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 124 3.8e-07 2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 123 4.0e-07 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 101 4.2e-07 2
WARNING: Descriptions of 415 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0016687 [details] [associations]
symbol:Nurf-38 "Nucleosome remodeling factor - 38kD"
species:7227 "Drosophila melanogaster" [GO:0004427 "inorganic
diphosphatase activity" evidence=ISS;NAS;IDA] [GO:0005737
"cytoplasm" evidence=NAS;IDA] [GO:0016589 "NURF complex"
evidence=NAS;IDA;TAS;IPI] [GO:0005634 "nucleus" evidence=NAS;IDA]
[GO:0006338 "chromatin remodeling" evidence=IDA] [GO:0042766
"nucleosome mobilization" evidence=IDA] [GO:0006351 "transcription,
DNA-dependent" evidence=IDA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0035076 "ecdysone receptor-mediated
signaling pathway" evidence=IGI] [GO:0045747 "positive regulation
of Notch signaling pathway" evidence=IGI] [GO:0035206 "regulation
of hemocyte proliferation" evidence=IMP] InterPro:IPR008162
Pfam:PF00719 PROSITE:PS00387 EMBL:AE013599 GO:GO:0005737
GO:GO:0006355 GO:GO:0000287 GO:GO:0045747 GO:GO:0006351
GO:GO:0006796 GO:GO:0035206 GO:GO:0035076 GO:GO:0042766
GO:GO:0004427 GO:GO:0016589 eggNOG:COG0221 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 GeneTree:ENSGT00390000017004
EMBL:AF085600 EMBL:AF085601 EMBL:AY075479 RefSeq:NP_001137758.1
RefSeq:NP_523849.3 UniGene:Dm.1958 ProteinModelPortal:O77460
SMR:O77460 IntAct:O77460 MINT:MINT-286916 STRING:O77460
PaxDb:O77460 EnsemblMetazoa:FBtr0072343 GeneID:37922
KEGG:dme:Dmel_CG4634 CTD:37922 FlyBase:FBgn0016687
InParanoid:O77460 KO:K11726 OMA:DSDTGCC OrthoDB:EOG4J0ZQZ
PhylomeDB:O77460 GenomeRNAi:37922 NextBio:806063 Bgee:O77460
GermOnline:CG4634 Uniprot:O77460
Length = 338
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 137/227 (60%), Positives = 170/227 (74%)
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNL 215
+K +ISP HDIPLY+N + I+NMVVE+PRWTNAKMEI+L P+NPIKQDIKKG L
Sbjct: 69 FKNKCGNVISPMHDIPLYANEEKTIYNMVVEVPRWTNAKMEISLKTPMNPIKQDIKKGKL 128
Query: 216 RYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQV 275
R+VAN FPH GYIWNYGALPQTWENPD + TG KGD DPIDV+EIG R+AKRG++++V
Sbjct: 129 RFVANCFPHKGYIWNYGALPQTWENPDHIEPSTGCKGDNDPIDVIEIGYRVAKRGDVLKV 188
Query: 276 KALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDG 335
K LG I LIDEG+TDWKIIAI+VNDP A+K+ND+AD++ +FPG L+AT EWFKIYKIPDG
Sbjct: 189 KVLGTIALIDEGETDWKIIAIDVNDPLASKVNDIADVDQYFPGLLRATVEWFKIYKIPDG 248
Query: 336 KPENVLNTRVEGESSQGFIPGCRGRTEQVVSSRLETPPLIGSSGSEN 382
KPEN + +++ F T + + + P GS + N
Sbjct: 249 KPENQFAFNGDAKNAD-FANTIIAETHKFWQNLVHQSPASGSISTTN 294
Score = 146 (56.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 25/35 (71%), Positives = 31/35 (88%)
Query: 384 LISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+ISP HDIPLY+N + I+NMVVE+PRWTNAKME+
Sbjct: 76 VISPMHDIPLYANEEKTIYNMVVEVPRWTNAKMEI 110
>UNIPROTKB|F1NT28 [details] [associations]
symbol:PPA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
[GO:0004427 "inorganic diphosphatase activity" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 GO:GO:0004427 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 GeneTree:ENSGT00390000017004
OMA:WEDPGHS EMBL:AADN02027979 EMBL:AADN02027980 IPI:IPI00583993
Ensembl:ENSGALT00000007067 Uniprot:F1NT28
Length = 306
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 121/184 (65%), Positives = 144/184 (78%)
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNL 215
+K + ISPFHDIPLY++ +FNMVVE+PRWTNAKMEI +PLNPIKQD+KKG L
Sbjct: 37 FKDAAGRYISPFHDIPLYADAGKNVFNMVVEVPRWTNAKMEIATKDPLNPIKQDVKKGKL 96
Query: 216 RYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQV 275
RYVANVFPH GYIWNYGA+PQTWE+P D +TG GD DPIDV EIG ++ RGE+I+V
Sbjct: 97 RYVANVFPHKGYIWNYGAIPQTWEDPGHKDENTGCCGDNDPIDVCEIGSKVCSRGEVIKV 156
Query: 276 KALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDG 335
K LG + LIDEG+TDWKIIAINV DP A ND+ D+ PGYL+AT +WF+ YK+PDG
Sbjct: 157 KVLGTLALIDEGETDWKIIAINVEDPEAENYNDINDVRRMKPGYLEATVDWFRRYKVPDG 216
Query: 336 KPEN 339
KPEN
Sbjct: 217 KPEN 220
Score = 148 (57.2 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
ISPFHDIPLY++ +FNMVVE+PRWTNAKME+
Sbjct: 45 ISPFHDIPLYADAGKNVFNMVVEVPRWTNAKMEI 78
>ZFIN|ZDB-GENE-050417-375 [details] [associations]
symbol:ppa1b "pyrophosphatase (inorganic) 1b"
species:7955 "Danio rerio" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0004427 "inorganic diphosphatase
activity" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387
ZFIN:ZDB-GENE-050417-375 GO:GO:0005737 GO:GO:0000287 GO:GO:0006796
KO:K01507 GO:GO:0004427 Gene3D:3.90.80.10 PANTHER:PTHR10286
SUPFAM:SSF50324 HOVERGEN:HBG000491 EMBL:BC092782 IPI:IPI00505335
RefSeq:NP_001017833.1 UniGene:Dr.44230 ProteinModelPortal:Q568N9
STRING:Q568N9 GeneID:550531 KEGG:dre:550531 CTD:550531
InParanoid:Q568N9 NextBio:20879772 ArrayExpress:Q568N9
Uniprot:Q568N9
Length = 291
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 118/184 (64%), Positives = 148/184 (80%)
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNL 215
+K S +SPFHDIP++++ IF+MVVE+PRWTNAKMEI +PLNPIKQD+KKGNL
Sbjct: 20 FKNSNGKYLSPFHDIPMFADEAQNIFHMVVEVPRWTNAKMEIATKDPLNPIKQDVKKGNL 79
Query: 216 RYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQV 275
RYVANVFPH GYIWNYGA+PQTWE+P D TG GD DPIDV EIG ++ RG++I+V
Sbjct: 80 RYVANVFPHKGYIWNYGAIPQTWEDPGHKDNDTGCCGDNDPIDVCEIGSKVCSRGDVIKV 139
Query: 276 KALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDG 335
K LGV+ +IDEG+TDWK+IAINV+DP A LN+++D+ PGYL+AT +WF+ YK+PDG
Sbjct: 140 KVLGVLAMIDEGETDWKVIAINVDDPEAKDLNNISDVRRLKPGYLEATVDWFRRYKVPDG 199
Query: 336 KPEN 339
KPEN
Sbjct: 200 KPEN 203
Score = 139 (54.0 bits), Expect = 9.3e-07, P = 9.3e-07
Identities = 24/40 (60%), Positives = 33/40 (82%)
Query: 380 SENG-LISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+ NG +SPFHDIP++++ IF+MVVE+PRWTNAKME+
Sbjct: 22 NSNGKYLSPFHDIPMFADEAQNIFHMVVEVPRWTNAKMEI 61
>CGD|CAL0006016 [details] [associations]
symbol:IPP1 species:5476 "Candida albicans" [GO:0030446
"hyphal cell wall" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0004427
"inorganic diphosphatase activity" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 CGD:CAL0006016
GO:GO:0005737 GO:GO:0000287 GO:GO:0006796 GO:GO:0030446 KO:K01507
GO:GO:0004427 EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG0221
Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
RefSeq:XP_714437.1 RefSeq:XP_714485.1 ProteinModelPortal:P83777
SMR:P83777 STRING:P83777 COMPLUYEAST-2DPAGE:P83777 PRIDE:P83777
GeneID:3643838 GeneID:3643874 KEGG:cal:CaO19.11072
KEGG:cal:CaO19.3590 Uniprot:P83777
Length = 288
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 120/186 (64%), Positives = 147/186 (79%)
Query: 154 KPYKGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKG 213
K Y + +SPFHDIPLY+N + I NM+VE+PRWTNAK+EI+ + LNPI QD KKG
Sbjct: 18 KVYIEKDGKPVSPFHDIPLYANEEKTILNMIVEVPRWTNAKLEISKEQKLNPIIQDTKKG 77
Query: 214 NLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEII 273
LR+V N FPHHGYI NYGA PQTWE+P+++ T KGD DP+DV EIGE++A GE+
Sbjct: 78 KLRFVRNCFPHHGYIHNYGAFPQTWEDPNQSHPETKAKGDNDPLDVCEIGEKVATVGEVK 137
Query: 274 QVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIP 333
QVK LGV+ L+DEG+TDWK+I I+VNDP A KLND+ D+ETH PG L+ATNEWF+IYKIP
Sbjct: 138 QVKVLGVMALLDEGETDWKVIVIDVNDPLAPKLNDIEDVETHLPGLLRATNEWFRIYKIP 197
Query: 334 DGKPEN 339
DGKPEN
Sbjct: 198 DGKPEN 203
Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGNAMEM 424
+SPFHDIPLY+N + I NM+VE+PRWTNAK+E+ ++
Sbjct: 28 VSPFHDIPLYANEEKTILNMIVEVPRWTNAKLEISKEQKL 67
>UNIPROTKB|P83777 [details] [associations]
symbol:IPP1 "Inorganic pyrophosphatase" species:237561
"Candida albicans SC5314" [GO:0030446 "hyphal cell wall"
evidence=IDA] InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387
CGD:CAL0006016 GO:GO:0005737 GO:GO:0000287 GO:GO:0006796
GO:GO:0030446 KO:K01507 GO:GO:0004427 EMBL:AACQ01000103
EMBL:AACQ01000102 eggNOG:COG0221 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 RefSeq:XP_714437.1
RefSeq:XP_714485.1 ProteinModelPortal:P83777 SMR:P83777
STRING:P83777 COMPLUYEAST-2DPAGE:P83777 PRIDE:P83777 GeneID:3643838
GeneID:3643874 KEGG:cal:CaO19.11072 KEGG:cal:CaO19.3590
Uniprot:P83777
Length = 288
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 120/186 (64%), Positives = 147/186 (79%)
Query: 154 KPYKGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKG 213
K Y + +SPFHDIPLY+N + I NM+VE+PRWTNAK+EI+ + LNPI QD KKG
Sbjct: 18 KVYIEKDGKPVSPFHDIPLYANEEKTILNMIVEVPRWTNAKLEISKEQKLNPIIQDTKKG 77
Query: 214 NLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEII 273
LR+V N FPHHGYI NYGA PQTWE+P+++ T KGD DP+DV EIGE++A GE+
Sbjct: 78 KLRFVRNCFPHHGYIHNYGAFPQTWEDPNQSHPETKAKGDNDPLDVCEIGEKVATVGEVK 137
Query: 274 QVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIP 333
QVK LGV+ L+DEG+TDWK+I I+VNDP A KLND+ D+ETH PG L+ATNEWF+IYKIP
Sbjct: 138 QVKVLGVMALLDEGETDWKVIVIDVNDPLAPKLNDIEDVETHLPGLLRATNEWFRIYKIP 197
Query: 334 DGKPEN 339
DGKPEN
Sbjct: 198 DGKPEN 203
Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 23/40 (57%), Positives = 32/40 (80%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGNAMEM 424
+SPFHDIPLY+N + I NM+VE+PRWTNAK+E+ ++
Sbjct: 28 VSPFHDIPLYANEEKTILNMIVEVPRWTNAKLEISKEQKL 67
>RGD|1589773 [details] [associations]
symbol:Ppa1 "pyrophosphatase (inorganic) 1" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
[GO:0008152 "metabolic process" evidence=ISO] [GO:0016462
"pyrophosphatase activity" evidence=ISO] InterPro:IPR008162
Pfam:PF00719 PROSITE:PS00387 RGD:1589773 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 KO:K01507 GO:GO:0004427 eggNOG:COG0221
HOGENOM:HOG000195569 Gene3D:3.90.80.10 PANTHER:PTHR10286
SUPFAM:SSF50324 HOVERGEN:HBG000491 OrthoDB:EOG4KPTBC
GeneTree:ENSGT00390000017004 CTD:5464 OMA:WEDPGHS EMBL:BC099794
IPI:IPI00915560 RefSeq:NP_001094304.1 UniGene:Rn.106916
STRING:Q499R7 Ensembl:ENSRNOT00000000674 GeneID:294504
KEGG:rno:294504 UCSC:RGD:1589773 InParanoid:Q499R7 NextBio:638225
Genevestigator:Q499R7 Uniprot:Q499R7
Length = 331
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 118/183 (64%), Positives = 152/183 (83%)
Query: 157 KGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLR 216
K + ISPFHD+P+Y++ KD +F+MVVE+PRW+NAKMEI +PLNPIKQD+KKG LR
Sbjct: 64 KNEKGQYISPFHDVPIYAD-KD-VFHMVVEVPRWSNAKMEIATKDPLNPIKQDVKKGKLR 121
Query: 217 YVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVK 276
YVAN+FP+ GYIWNYGA+PQTWE+P +D HTG GD DPIDV EIG ++ RGEII+VK
Sbjct: 122 YVANLFPYKGYIWNYGAIPQTWEDPGHSDEHTGCCGDNDPIDVCEIGSKVCARGEIIRVK 181
Query: 277 ALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGK 336
LG++ +IDEG+TDWK+IAINV+DP+AA +D++D+E PGYL+AT +WF+ YK+PDGK
Sbjct: 182 VLGILAMIDEGETDWKVIAINVDDPDAANYHDISDVERLKPGYLEATVDWFRRYKVPDGK 241
Query: 337 PEN 339
PEN
Sbjct: 242 PEN 244
Score = 134 (52.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 380 SENG-LISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+E G ISPFHD+P+Y++ KD +F+MVVE+PRW+NAKME+
Sbjct: 65 NEKGQYISPFHDVPIYAD-KD-VFHMVVEVPRWSNAKMEI 102
>UNIPROTKB|F1SUE3 [details] [associations]
symbol:PPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 KO:K01507 GO:GO:0004427
Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
GeneTree:ENSGT00390000017004 OMA:WEDPGHS EMBL:FP340184
RefSeq:XP_001925115.3 UniGene:Ssc.2572 Ensembl:ENSSSCT00000011231
GeneID:100155201 KEGG:ssc:100155201 Uniprot:F1SUE3
Length = 289
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 119/183 (65%), Positives = 151/183 (82%)
Query: 157 KGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLR 216
K + ISPFHDIP+Y++ KD +F+MVVE+PRW+NAKMEI +PLNPIKQD+KKG LR
Sbjct: 22 KNEKGQYISPFHDIPIYAD-KD-VFHMVVEVPRWSNAKMEIATKDPLNPIKQDVKKGKLR 79
Query: 217 YVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVK 276
YVAN+FP+ GYIWNYGA+PQTWE+P +D HTG GD DPIDV EIG ++ RGEII+VK
Sbjct: 80 YVANLFPYKGYIWNYGAIPQTWEDPGHSDKHTGCCGDNDPIDVCEIGSKVCARGEIIRVK 139
Query: 277 ALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGK 336
LG++ +IDEG+TDWK+IAINV+DP+AA ND+ D++ PGYL+AT +WF+ YK+PDGK
Sbjct: 140 VLGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKPGYLEATVDWFRRYKVPDGK 199
Query: 337 PEN 339
PEN
Sbjct: 200 PEN 202
Score = 135 (52.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/40 (65%), Positives = 35/40 (87%)
Query: 380 SENG-LISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+E G ISPFHDIP+Y++ KD +F+MVVE+PRW+NAKME+
Sbjct: 23 NEKGQYISPFHDIPIYAD-KD-VFHMVVEVPRWSNAKMEI 60
>MGI|MGI:97831 [details] [associations]
symbol:Ppa1 "pyrophosphatase (inorganic) 1" species:10090 "Mus
musculus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0004427 "inorganic diphosphatase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IC]
[GO:0008152 "metabolic process" evidence=IDA] [GO:0016462
"pyrophosphatase activity" evidence=IDA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387
MGI:MGI:97831 GO:GO:0005737 GO:GO:0000287 GO:GO:0006796 KO:K01507
GO:GO:0004427 GO:GO:0016462 eggNOG:COG0221 HOGENOM:HOG000195569
Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
HOVERGEN:HBG000491 OrthoDB:EOG4KPTBC GeneTree:ENSGT00390000017004
CTD:5464 OMA:WEDPGHS ChiTaRS:PPA1 EMBL:AK008575 EMBL:BC010468
IPI:IPI00110684 RefSeq:NP_080714.2 UniGene:Mm.28897
ProteinModelPortal:Q9D819 SMR:Q9D819 STRING:Q9D819
PhosphoSite:Q9D819 REPRODUCTION-2DPAGE:IPI00110684
REPRODUCTION-2DPAGE:Q9D819 PaxDb:Q9D819 PRIDE:Q9D819
Ensembl:ENSMUST00000020286 GeneID:67895 KEGG:mmu:67895
InParanoid:Q9D819 NextBio:325878 Bgee:Q9D819 CleanEx:MM_PPA1
Genevestigator:Q9D819 GermOnline:ENSMUSG00000020089 Uniprot:Q9D819
Length = 289
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 118/183 (64%), Positives = 151/183 (82%)
Query: 157 KGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLR 216
K + ISPFHD+P+Y++ KD +F+MVVE+PRW+NAKMEI +PLNPIKQD+KKG LR
Sbjct: 22 KNEKGQYISPFHDVPIYAD-KD-VFHMVVEVPRWSNAKMEIATKDPLNPIKQDVKKGKLR 79
Query: 217 YVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVK 276
YVAN+FP+ GYIWNYGA+PQTWE+P +D HTG GD DPIDV EIG ++ RGEII+VK
Sbjct: 80 YVANLFPYKGYIWNYGAIPQTWEDPGHSDKHTGCCGDNDPIDVCEIGSKVCARGEIIRVK 139
Query: 277 ALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGK 336
LG++ +IDEG+TDWK+IAINV+DP+AA D++D+E PGYL+AT +WF+ YK+PDGK
Sbjct: 140 VLGILAMIDEGETDWKVIAINVDDPDAANYKDISDVERLKPGYLEATVDWFRRYKVPDGK 199
Query: 337 PEN 339
PEN
Sbjct: 200 PEN 202
Score = 134 (52.2 bits), Expect = 3.4e-06, P = 3.4e-06
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 380 SENG-LISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+E G ISPFHD+P+Y++ KD +F+MVVE+PRW+NAKME+
Sbjct: 23 NEKGQYISPFHDVPIYAD-KD-VFHMVVEVPRWSNAKMEI 60
>UNIPROTKB|F1PIJ6 [details] [associations]
symbol:PPA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006796 "phosphate-containing compound
metabolic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 GO:GO:0004427 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 GeneTree:ENSGT00390000017004
OMA:WEDPGHS EMBL:AAEX03002795 EMBL:AAEX03002796
Ensembl:ENSCAFT00000022283 Uniprot:F1PIJ6
Length = 284
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 122/194 (62%), Positives = 155/194 (79%)
Query: 146 KAILKSNKKPYKGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNP 205
+A LK+ K Y ISPFHD+P+Y++ KD +F+MVVE+PRW+NAKMEI +PLNP
Sbjct: 13 RAFLKNEKGQY-------ISPFHDVPIYAD-KD-VFHMVVEVPRWSNAKMEIATKDPLNP 63
Query: 206 IKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGER 265
IKQD+KKG LRYVAN+FP+ GYIWNYGA+PQTWE+P D HTG GD DPIDV EIG +
Sbjct: 64 IKQDVKKGKLRYVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSK 123
Query: 266 IAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNE 325
+ RGEII+VK LG++ +IDEG+TDWK+IAINV+DP+AA ND+ D++ PGYL+AT +
Sbjct: 124 VCARGEIIRVKVLGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKPGYLEATVD 183
Query: 326 WFKIYKIPDGKPEN 339
WF+ YK+PDGKPEN
Sbjct: 184 WFRRYKVPDGKPEN 197
Score = 134 (52.2 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 25/40 (62%), Positives = 35/40 (87%)
Query: 380 SENG-LISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+E G ISPFHD+P+Y++ KD +F+MVVE+PRW+NAKME+
Sbjct: 18 NEKGQYISPFHDVPIYAD-KD-VFHMVVEVPRWSNAKMEI 55
>UNIPROTKB|Q2KIV7 [details] [associations]
symbol:PPA2 "Pyrophosphatase (Inorganic) 2" species:9913
"Bos taurus" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
[GO:0004427 "inorganic diphosphatase activity" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005739
GO:GO:0000287 GO:GO:0006796 KO:K01507 GO:GO:0004427 eggNOG:COG0221
HOGENOM:HOG000195569 OMA:KSTHQCW Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 CTD:27068 HOVERGEN:HBG000491
OrthoDB:EOG4KPTBC GeneTree:ENSGT00390000017004 EMBL:DAAA02016679
EMBL:DAAA02016680 EMBL:DAAA02016681 EMBL:DAAA02016682 EMBL:BC112492
IPI:IPI00714601 RefSeq:NP_001069864.1 UniGene:Bt.58443 SMR:Q2KIV7
STRING:Q2KIV7 Ensembl:ENSBTAT00000003165 GeneID:615820
KEGG:bta:615820 InParanoid:Q2KIV7 NextBio:20899802 Uniprot:Q2KIV7
Length = 327
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 118/184 (64%), Positives = 144/184 (78%)
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNL 215
+K ISPFHDIPL + ++ +FNMVVE+PRWTNAKMEI EPLNPIKQD+K G L
Sbjct: 60 FKNVAGHYISPFHDIPLKVDSEENVFNMVVEVPRWTNAKMEIATKEPLNPIKQDVKDGKL 119
Query: 216 RYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQV 275
RYVAN+FPH GYIWNYGALPQTWE+P D T GD DPIDV EIG ++ RGE++ V
Sbjct: 120 RYVANIFPHKGYIWNYGALPQTWEDPHRKDKSTDCCGDNDPIDVCEIGSKVLSRGEVVHV 179
Query: 276 KALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDG 335
K LGV+ LID+G+TDWK+IAINVNDP A+K +D+ D++ + PGYL+AT WF+ YKIP+G
Sbjct: 180 KILGVLALIDQGETDWKLIAINVNDPEASKFHDIEDVKKYKPGYLEATLNWFRFYKIPEG 239
Query: 336 KPEN 339
KPEN
Sbjct: 240 KPEN 243
Score = 140 (54.3 bits), Expect = 9.7e-07, P = 9.7e-07
Identities = 24/34 (70%), Positives = 30/34 (88%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
ISPFHDIPL + ++ +FNMVVE+PRWTNAKME+
Sbjct: 68 ISPFHDIPLKVDSEENVFNMVVEVPRWTNAKMEI 101
>UNIPROTKB|Q15181 [details] [associations]
symbol:PPA1 "Inorganic pyrophosphatase" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=TAS] [GO:0071344
"diphosphate metabolic process" evidence=TAS] [GO:0004427
"inorganic diphosphatase activity" evidence=EXP] [GO:0005829
"cytosol" evidence=TAS] [GO:0006418 "tRNA aminoacylation for
protein translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] Reactome:REACT_71 Reactome:REACT_21259
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 EMBL:AF108211
GO:GO:0005829 GO:GO:0000287 GO:GO:0006796 EMBL:AL731540
GO:GO:0006418 KO:K01507 BRENDA:3.6.1.1 GO:GO:0004427 eggNOG:COG0221
HOGENOM:HOG000195569 Gene3D:3.90.80.10 PANTHER:PTHR10286
SUPFAM:SSF50324 HOVERGEN:HBG000491 OrthoDB:EOG4KPTBC GO:GO:0071344
CTD:5464 OMA:WEDPGHS EMBL:AF154065 EMBL:AB026723 EMBL:AF217186
EMBL:AF092439 EMBL:AF119665 EMBL:BC001022 EMBL:BC061581
EMBL:BC105034 EMBL:BC105036 EMBL:BC107882 EMBL:Z48605
IPI:IPI00015018 RefSeq:NP_066952.1 UniGene:Hs.437403
ProteinModelPortal:Q15181 SMR:Q15181 IntAct:Q15181 STRING:Q15181
PhosphoSite:Q15181 DMDM:8247940 REPRODUCTION-2DPAGE:IPI00015018
PaxDb:Q15181 PeptideAtlas:Q15181 PRIDE:Q15181 DNASU:5464
Ensembl:ENST00000373232 GeneID:5464 KEGG:hsa:5464 UCSC:uc001jqv.1
GeneCards:GC10M071962 H-InvDB:HIX0032502 HGNC:HGNC:9226
HPA:HPA019878 HPA:HPA020096 MIM:179030 neXtProt:NX_Q15181
PharmGKB:PA33550 InParanoid:Q15181 PhylomeDB:Q15181 ChiTaRS:PPA1
GenomeRNAi:5464 NextBio:21148 ArrayExpress:Q15181 Bgee:Q15181
CleanEx:HS_PPA1 Genevestigator:Q15181 GermOnline:ENSG00000180817
Uniprot:Q15181
Length = 289
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 119/183 (65%), Positives = 149/183 (81%)
Query: 157 KGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLR 216
K + ISPFHDIP+Y++ KD +F+MVVE+PRW+NAKMEI +PLNPIKQD+KKG LR
Sbjct: 22 KNEKGQYISPFHDIPIYAD-KD-VFHMVVEVPRWSNAKMEIATKDPLNPIKQDVKKGKLR 79
Query: 217 YVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVK 276
YVAN+FP+ GYIWNYGA+PQTWE+P D HTG GD DPIDV EIG ++ RGEII VK
Sbjct: 80 YVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARGEIIGVK 139
Query: 277 ALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGK 336
LG++ +IDEG+TDWK+IAINV+DP+AA ND+ D++ PGYL+AT +WF+ YK+PDGK
Sbjct: 140 VLGILAMIDEGETDWKVIAINVDDPDAANYNDINDVKRLKPGYLEATVDWFRRYKVPDGK 199
Query: 337 PEN 339
PEN
Sbjct: 200 PEN 202
Score = 135 (52.6 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 26/40 (65%), Positives = 35/40 (87%)
Query: 380 SENG-LISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+E G ISPFHDIP+Y++ KD +F+MVVE+PRW+NAKME+
Sbjct: 23 NEKGQYISPFHDIPIYAD-KD-VFHMVVEVPRWSNAKMEI 60
>UNIPROTKB|P37980 [details] [associations]
symbol:PPA1 "Inorganic pyrophosphatase" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0004427
"inorganic diphosphatase activity" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 KO:K01507 GO:GO:0004427 eggNOG:COG0221
HOGENOM:HOG000195569 Gene3D:3.90.80.10 PANTHER:PTHR10286
SUPFAM:SSF50324 HOVERGEN:HBG000491 OrthoDB:EOG4KPTBC
GeneTree:ENSGT00390000017004 EMBL:M95283 EMBL:BC114891
IPI:IPI00687219 PIR:A45153 RefSeq:NP_001068586.1 UniGene:Bt.7870
ProteinModelPortal:P37980 SMR:P37980 STRING:P37980 PRIDE:P37980
Ensembl:ENSBTAT00000010311 GeneID:280701 KEGG:bta:280701 CTD:5464
InParanoid:P37980 OMA:WEDPGHS NextBio:20804883 Uniprot:P37980
Length = 289
Score = 677 (243.4 bits), Expect = 1.3e-66, P = 1.3e-66
Identities = 117/183 (63%), Positives = 148/183 (80%)
Query: 157 KGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLR 216
K + ISPFHDIP+Y++ ++F+MVVE+PRW+NAKMEI +PLNPIKQD+KKG LR
Sbjct: 22 KNEKGQYISPFHDIPIYAD--KEVFHMVVEVPRWSNAKMEIATKDPLNPIKQDVKKGKLR 79
Query: 217 YVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVK 276
YVAN+FP+ GYIWNYGA+PQTWE+P D HTG GD DPIDV EIG ++ RGEII+VK
Sbjct: 80 YVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARGEIIRVK 139
Query: 277 ALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGK 336
LG++ +IDEG+TDWK+IAINV DP+AA ND+ D++ PGYL+AT +WF+ YK+PDGK
Sbjct: 140 VLGILAMIDEGETDWKVIAINVEDPDAANYNDINDVKRLKPGYLEATVDWFRRYKVPDGK 199
Query: 337 PEN 339
PEN
Sbjct: 200 PEN 202
Score = 131 (51.2 bits), Expect = 7.4e-06, P = 7.4e-06
Identities = 24/40 (60%), Positives = 34/40 (85%)
Query: 380 SENG-LISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+E G ISPFHDIP+Y++ ++F+MVVE+PRW+NAKME+
Sbjct: 23 NEKGQYISPFHDIPIYAD--KEVFHMVVEVPRWSNAKMEI 60
>SGD|S000000215 [details] [associations]
symbol:IPP1 "Cytoplasmic inorganic pyrophosphatase (PPase)"
species:4932 "Saccharomyces cerevisiae" [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA;IC]
[GO:0004427 "inorganic diphosphatase activity" evidence=IEA;IDA]
[GO:0042803 "protein homodimerization activity" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=TAS] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR008162 Pfam:PF00719
PROSITE:PS00387 SGD:S000000215 GO:GO:0005829 GO:GO:0042803
GO:GO:0000287 EMBL:BK006936 GO:GO:0006796 KO:K01507 GO:GO:0004427
eggNOG:COG0221 HOGENOM:HOG000195569 OMA:KSTHQCW Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 GeneTree:ENSGT00390000017004
OrthoDB:EOG4MGWHC EMBL:X13253 EMBL:Z35880 EMBL:AY692953 PIR:S45864
RefSeq:NP_009565.1 PDB:117E PDB:1E6A PDB:1E9G PDB:1HUJ PDB:1HUK
PDB:1M38 PDB:1PYP PDB:1WGI PDB:1WGJ PDB:1YPP PDB:2IHP PDB:2IK0
PDB:2IK1 PDB:2IK2 PDB:2IK4 PDB:2IK6 PDB:2IK7 PDB:2IK9 PDB:8PRK
PDBsum:117E PDBsum:1E6A PDBsum:1E9G PDBsum:1HUJ PDBsum:1HUK
PDBsum:1M38 PDBsum:1PYP PDBsum:1WGI PDBsum:1WGJ PDBsum:1YPP
PDBsum:2IHP PDBsum:2IK0 PDBsum:2IK1 PDBsum:2IK2 PDBsum:2IK4
PDBsum:2IK6 PDBsum:2IK7 PDBsum:2IK9 PDBsum:8PRK
ProteinModelPortal:P00817 SMR:P00817 DIP:DIP-5753N IntAct:P00817
MINT:MINT-614477 STRING:P00817 COMPLUYEAST-2DPAGE:P00817
SWISS-2DPAGE:P00817 PaxDb:P00817 PeptideAtlas:P00817
EnsemblFungi:YBR011C GeneID:852296 KEGG:sce:YBR011C
EvolutionaryTrace:P00817 NextBio:970952 Genevestigator:P00817
GermOnline:YBR011C Uniprot:P00817
Length = 287
Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
Identities = 122/186 (65%), Positives = 147/186 (79%)
Query: 154 KPYKGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKG 213
K Y + +S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KKG
Sbjct: 17 KVYIEKDGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKG 76
Query: 214 NLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEII 273
LR+V N FPHHGYI NYGA PQTWE+P+ + T GD DPIDVLEIGE IA G++
Sbjct: 77 KLRFVRNCFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVK 136
Query: 274 QVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIP 333
QVKALG++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIP
Sbjct: 137 QVKALGIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIP 196
Query: 334 DGKPEN 339
DGKPEN
Sbjct: 197 DGKPEN 202
Score = 142 (55.0 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 361 TEQV-VSSRLETPPLIGSSGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
T Q+ + LE I G +S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 5 TRQIGAKNTLEYKVYIEKDGKP---VSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 60
>ZFIN|ZDB-GENE-040426-1695 [details] [associations]
symbol:ppa1a "pyrophosphatase (inorganic) 1a"
species:7955 "Danio rerio" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
[GO:0004427 "inorganic diphosphatase activity" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387
ZFIN:ZDB-GENE-040426-1695 GO:GO:0005737 GO:GO:0000287 GO:GO:0006796
KO:K01507 GO:GO:0004427 HSSP:P00817 eggNOG:COG0221
HOGENOM:HOG000195569 Gene3D:3.90.80.10 PANTHER:PTHR10286
SUPFAM:SSF50324 HOVERGEN:HBG000491 OrthoDB:EOG4KPTBC EMBL:BC059512
IPI:IPI00493610 RefSeq:NP_957027.1 UniGene:Dr.82650
ProteinModelPortal:Q6PC11 SMR:Q6PC11 STRING:Q6PC11 GeneID:393706
KEGG:dre:393706 CTD:393706 InParanoid:Q6PC11 NextBio:20814708
ArrayExpress:Q6PC11 Uniprot:Q6PC11
Length = 289
Score = 672 (241.6 bits), Expect = 4.5e-66, P = 4.5e-66
Identities = 114/184 (61%), Positives = 141/184 (76%)
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNL 215
+K + ISPFHDIP+Y+N + IFN VVE+PRWTNAKMEI + LNP+KQD+KKGNL
Sbjct: 20 FKNAAGKYISPFHDIPIYANETENIFNAVVEVPRWTNAKMEIATKDALNPLKQDVKKGNL 79
Query: 216 RYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQV 275
RYV+NVFPH GYIWNYGA+PQTWE+P D TG GD DPID+ +IG + RG++IQV
Sbjct: 80 RYVSNVFPHKGYIWNYGAIPQTWEDPGHRDGDTGCCGDNDPIDICDIGSEVCSRGQVIQV 139
Query: 276 KALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDG 335
K LG + LIDEG+TDWK++ IN DP A + ND+ DI PGYL+AT +WF+ YK+PDG
Sbjct: 140 KVLGTLALIDEGETDWKVLVINTEDPEAGQYNDIEDIRRLKPGYLEATLDWFRRYKVPDG 199
Query: 336 KPEN 339
KPEN
Sbjct: 200 KPEN 203
Score = 148 (57.2 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 25/34 (73%), Positives = 30/34 (88%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
ISPFHDIP+Y+N + IFN VVE+PRWTNAKME+
Sbjct: 28 ISPFHDIPIYANETENIFNAVVEVPRWTNAKMEI 61
>ASPGD|ASPL0000034810 [details] [associations]
symbol:ippA species:162425 "Emericella nidulans"
[GO:0006091 "generation of precursor metabolites and energy"
evidence=RCA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA;RCA] [GO:0071470 "cellular response to osmotic stress"
evidence=IEP] [GO:0005622 "intracellular" evidence=IDA] [GO:0005576
"extracellular region" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0006950 GO:GO:0000287 EMBL:BN001306 EMBL:AACD01000051
GO:GO:0006796 KO:K01507 GO:GO:0004427 HSSP:P00817 eggNOG:COG0221
HOGENOM:HOG000195569 OMA:KSTHQCW Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 RefSeq:XP_660572.1 STRING:Q5B912
PRIDE:Q5B912 GeneID:2873788 KEGG:ani:AN2968.2 OrthoDB:EOG4MGWHC
Uniprot:Q5B912
Length = 287
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 121/208 (58%), Positives = 151/208 (72%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+SPFHDIPLY+N + + NM+VEIPRWTNAK EI+ E LNPIKQD KKG LR+V N FP
Sbjct: 27 VSPFHDIPLYANAEKTVLNMIVEIPRWTNAKQEISKEEFLNPIKQDTKKGKLRFVRNCFP 86
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
H GY+WNYGA PQTWE+P+ T KGD DP+DV EIGE + G++ QVK LGV+ L
Sbjct: 87 HKGYLWNYGAFPQTWEDPNVVHPETKAKGDNDPLDVCEIGELVGYPGQVKQVKVLGVMAL 146
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVLNT 343
+DE +TDWK+I I+VNDP A KLND+ D+E H PG L+ATNEWF+IYKIPDGKPEN
Sbjct: 147 LDEEETDWKVIVIDVNDPLAPKLNDIEDVERHLPGLLRATNEWFRIYKIPDGKPENQFAF 206
Query: 344 RVEGES---SQGFIPGCRGRTEQVVSSR 368
E ++ ++ I C E++VS +
Sbjct: 207 SGEAKNKKYAEEVIHECADAWEKLVSGK 234
Score = 143 (55.4 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 23/34 (67%), Positives = 29/34 (85%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+SPFHDIPLY+N + + NM+VEIPRWTNAK E+
Sbjct: 27 VSPFHDIPLYANAEKTVLNMIVEIPRWTNAKQEI 60
>UNIPROTKB|J9NSN3 [details] [associations]
symbol:PPA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006796 "phosphate-containing compound
metabolic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 GO:GO:0004427 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 GeneTree:ENSGT00390000017004
EMBL:AAEX03016805 Ensembl:ENSCAFT00000049097 Uniprot:J9NSN3
Length = 261
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 117/176 (66%), Positives = 140/176 (79%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
ISPFHDIPL + + +FNMVVE+PRWTNAKMEI EPLNPIKQDIK G LRYVAN+FP
Sbjct: 69 ISPFHDIPLKVDSTENLFNMVVEVPRWTNAKMEIATKEPLNPIKQDIKDGKLRYVANIFP 128
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
H GYIWNYGALPQTWE+P D T GD DPIDV EIG ++ GE+I VK LG++ L
Sbjct: 129 HKGYIWNYGALPQTWEDPHRKDKSTDCCGDNDPIDVCEIGSKVLSCGEVIPVKILGILAL 188
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
ID+G+TDWKIIAINVNDP A+K +D+ D++ + PGYL+AT WF+ YK+P+GKPEN
Sbjct: 189 IDQGETDWKIIAINVNDPEASKFHDIDDVKKYKPGYLEATLNWFRFYKVPEGKPEN 244
Score = 137 (53.3 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/34 (70%), Positives = 29/34 (85%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
ISPFHDIPL + + +FNMVVE+PRWTNAKME+
Sbjct: 69 ISPFHDIPLKVDSTENLFNMVVEVPRWTNAKMEI 102
>UNIPROTKB|E1C6X1 [details] [associations]
symbol:PPA2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0004427 "inorganic diphosphatase activity" evidence=IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005739
GO:GO:0000287 GO:GO:0006796 GO:GO:0004427 OMA:KSTHQCW
Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
GeneTree:ENSGT00390000017004 EMBL:AADN02008830 IPI:IPI00593240
PRIDE:E1C6X1 Ensembl:ENSGALT00000017222 Uniprot:E1C6X1
Length = 332
Score = 666 (239.5 bits), Expect = 2.0e-65, P = 2.0e-65
Identities = 122/199 (61%), Positives = 149/199 (74%)
Query: 156 YKGSENGLISPFHDIPLYSNVK-DK--------------IFNMVVEIPRWTNAKMEINLN 200
+K ++ ISPFHDIPL++ K DK +FNMVVE+PRWTNAKMEI
Sbjct: 47 FKNADGKYISPFHDIPLFAGSKEDKEIPAKRSKTTGNEVLFNMVVEVPRWTNAKMEIATE 106
Query: 201 EPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVL 260
EPLNPIKQD KKG RYVAN+FPH GYIWNYGALPQTWE+P+ TD TG GD DP+DV
Sbjct: 107 EPLNPIKQDTKKGKPRYVANIFPHKGYIWNYGALPQTWEDPNHTDNITGCCGDNDPVDVC 166
Query: 261 EIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYL 320
EIG ++ GEI+QVK LGV+ L+DEG+TDWKIIA+ V+DP A K++D+ D+ H PGYL
Sbjct: 167 EIGSKVRSSGEIVQVKVLGVLALLDEGETDWKIIAVGVDDPEAQKIHDIDDVRKHKPGYL 226
Query: 321 KATNEWFKIYKIPDGKPEN 339
+AT +WF+ YK+PDGKPEN
Sbjct: 227 EATIDWFRCYKVPDGKPEN 245
Score = 118 (46.6 bits), Expect = 0.00030, P = 0.00030
Identities = 33/74 (44%), Positives = 41/74 (55%)
Query: 361 TEQVVSSRLETPPL-IGSSGSENGLISPFHDIPLYSNVK-DK--------------IFNM 404
TEQ R TP + ++ ISPFHDIPL++ K DK +FNM
Sbjct: 32 TEQ--RGRPNTPDYRLYFKNADGKYISPFHDIPLFAGSKEDKEIPAKRSKTTGNEVLFNM 89
Query: 405 VVEIPRWTNAKMEV 418
VVE+PRWTNAKME+
Sbjct: 90 VVEVPRWTNAKMEI 103
>WB|WBGene00008149 [details] [associations]
symbol:pyp-1 species:6239 "Caenorhabditis elegans"
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0004427
"inorganic diphosphatase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0006796 "phosphate-containing
compound metabolic process" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040039 "inductive
cell migration" evidence=IMP] [GO:0005773 "vacuole" evidence=IDA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0005773 GO:GO:0002119
GO:GO:0000287 GO:GO:0000003 GO:GO:0040039 GO:GO:0006796 KO:K01507
GO:GO:0004427 EMBL:Z68882 eggNOG:COG0221 HOGENOM:HOG000195569
Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
GeneTree:ENSGT00390000017004 PIR:E88797 PIR:T20014
RefSeq:NP_001023073.1 RefSeq:NP_001023074.1 RefSeq:NP_001023075.1
RefSeq:NP_001023076.1 ProteinModelPortal:Q18680 SMR:Q18680
MINT:MINT-1121710 STRING:Q18680 PaxDb:Q18680 PRIDE:Q18680
EnsemblMetazoa:C47E12.4b.1 EnsemblMetazoa:C47E12.4b.2 GeneID:177856
KEGG:cel:CELE_C47E12.4 UCSC:C47E12.5a.1 CTD:177856
WormBase:C47E12.4a WormBase:C47E12.4b WormBase:C47E12.4c
WormBase:C47E12.4d InParanoid:Q18680 OMA:SVEWFRN NextBio:898676
Uniprot:Q18680
Length = 407
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 113/183 (61%), Positives = 145/183 (79%)
Query: 157 KGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLR 216
KG + G++SP+HDIPL++N +++NM+VEIPRWTNAKME+ EP +PIKQD KKG R
Sbjct: 144 KGPQ-GIVSPWHDIPLFANKDKRVYNMIVEIPRWTNAKMEMATKEPFSPIKQDEKKGVAR 202
Query: 217 YVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVK 276
+V N+FPH GYIWNYGALPQTWE+P+ TG KGD DPIDV+E+G ++A RG ++QVK
Sbjct: 203 FVHNIFPHKGYIWNYGALPQTWEDPNHVVPDTGAKGDNDPIDVIEVGSKVAGRGAVLQVK 262
Query: 277 ALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGK 336
LG + LIDEG+TDWK++AI+VND NA KLND+ D+E +PG L A+ EWF+ YKIP GK
Sbjct: 263 VLGTLALIDEGETDWKLVAIDVNDENADKLNDIDDVEKVYPGLLAASVEWFRNYKIPAGK 322
Query: 337 PEN 339
P N
Sbjct: 323 PAN 325
Score = 147 (56.8 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 23/36 (63%), Positives = 33/36 (91%)
Query: 383 GLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
G++SP+HDIPL++N +++NM+VEIPRWTNAKME+
Sbjct: 148 GIVSPWHDIPLFANKDKRVYNMIVEIPRWTNAKMEM 183
>ZFIN|ZDB-GENE-040426-1857 [details] [associations]
symbol:ppa2 "pyrophosphatase (inorganic) 2"
species:7955 "Danio rerio" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
[GO:0004427 "inorganic diphosphatase activity" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387
ZFIN:ZDB-GENE-040426-1857 GO:GO:0005737 GO:GO:0000287 GO:GO:0006796
GO:GO:0004427 Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
GeneTree:ENSGT00390000017004 EMBL:CU570873 IPI:IPI01023715
Ensembl:ENSDART00000023904 Bgee:F1QDB6 Uniprot:F1QDB6
Length = 339
Score = 653 (234.9 bits), Expect = 4.7e-64, P = 4.7e-64
Identities = 123/196 (62%), Positives = 149/196 (76%)
Query: 157 KGSENGLISPFHDIPLY-SNVKD------K------IFNMVVEIPRWTNAKMEINLNEPL 203
K S+ ISPFHDIPLY ++ +D K IFNMVVE+PRW+NAKMEI EPL
Sbjct: 60 KTSDGKYISPFHDIPLYVADEQDCVVPPKKMKMNGIIFNMVVEVPRWSNAKMEIATKEPL 119
Query: 204 NPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIG 263
NPI+QD+KKG LRYVANVFPH GYIWNYGALPQTWE+P TD T GD DPIDV EIG
Sbjct: 120 NPIRQDVKKGKLRYVANVFPHKGYIWNYGALPQTWEDPKHTDKETMCCGDNDPIDVCEIG 179
Query: 264 ERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKAT 323
++ G++IQVK LG++GLIDEG+TDWK+IAINV DP+++ LN + D+ PG+L+AT
Sbjct: 180 SKVCVTGQVIQVKVLGILGLIDEGETDWKVIAINVEDPDSSSLNSIEDVRKIKPGHLEAT 239
Query: 324 NEWFKIYKIPDGKPEN 339
+WFK YK+PDGKPEN
Sbjct: 240 VDWFKKYKVPDGKPEN 255
Score = 114 (45.2 bits), Expect = 0.00086, P = 0.00086
Identities = 28/52 (53%), Positives = 35/52 (67%)
Query: 380 SENGLISPFHDIPLY-SNVKD------K------IFNMVVEIPRWTNAKMEV 418
S+ ISPFHDIPLY ++ +D K IFNMVVE+PRW+NAKME+
Sbjct: 62 SDGKYISPFHDIPLYVADEQDCVVPPKKMKMNGIIFNMVVEVPRWSNAKMEI 113
>POMBASE|SPAC23C11.05 [details] [associations]
symbol:ipp1 "inorganic pyrophosphatase (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0000287 "magnesium ion
binding" evidence=IEA] [GO:0004427 "inorganic diphosphatase
activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829 "cytosol"
evidence=ISS;IDA] [GO:0006796 "phosphate-containing compound
metabolic process" evidence=ISO] InterPro:IPR008162 Pfam:PF00719
PROSITE:PS00387 PomBase:SPAC23C11.05 GO:GO:0005829 GO:GO:0005634
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000287 GO:GO:0006796
KO:K01507 GO:GO:0004427 eggNOG:COG0221 HOGENOM:HOG000195569
Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324 OMA:DSDTGCC
OrthoDB:EOG4MGWHC EMBL:X54301 PIR:S11496 RefSeq:NP_593636.1
ProteinModelPortal:P19117 SMR:P19117 STRING:P19117 PRIDE:P19117
EnsemblFungi:SPAC23C11.05.1 GeneID:2542011 KEGG:spo:SPAC23C11.05
NextBio:20803091 Uniprot:P19117
Length = 289
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 117/181 (64%), Positives = 139/181 (76%)
Query: 160 ENGL-ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYV 218
+NG IS +HDIPLY+N + I NMVVEIPRWT AK+EI LNPIKQD KKG LR+V
Sbjct: 23 KNGTPISSWHDIPLYANAEKTILNMVVEIPRWTQAKLEITKEATLNPIKQDTKKGKLRFV 82
Query: 219 ANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKAL 278
N FPHHGYIWNYGA PQT+E+P+ T KGD DP+DV EIGE G++ QVK L
Sbjct: 83 RNCFPHHGYIWNYGAFPQTYEDPNVVHPETKAKGDSDPLDVCEIGEARGYTGQVKQVKVL 142
Query: 279 GVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPE 338
GV+ L+DEG+TDWK+I I+VNDP A KLND+ D+E H PG ++ATNEWF+IYKIPDGKPE
Sbjct: 143 GVMALLDEGETDWKVIVIDVNDPLAPKLNDIEDVERHMPGLIRATNEWFRIYKIPDGKPE 202
Query: 339 N 339
N
Sbjct: 203 N 203
Score = 132 (51.5 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 25/39 (64%), Positives = 31/39 (79%)
Query: 381 ENGL-ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+NG IS +HDIPLY+N + I NMVVEIPRWT AK+E+
Sbjct: 23 KNGTPISSWHDIPLYANAEKTILNMVVEIPRWTQAKLEI 61
>UNIPROTKB|F1PXU2 [details] [associations]
symbol:PPA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006796 "phosphate-containing compound
metabolic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 GO:GO:0004427 OMA:KSTHQCW
Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
GeneTree:ENSGT00390000017004 EMBL:AAEX03016805
Ensembl:ENSCAFT00000017301 Uniprot:F1PXU2
Length = 340
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 118/191 (61%), Positives = 141/191 (73%)
Query: 164 ISPFHDIPLY---------------SNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQ 208
ISPFHDIPL S+ + +FNMVVE+PRWTNAKMEI EPLNPIKQ
Sbjct: 66 ISPFHDIPLKVDSTEENGIPTKRARSDEYENLFNMVVEVPRWTNAKMEIATKEPLNPIKQ 125
Query: 209 DIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAK 268
DIK G LRYVAN+FPH GYIWNYGALPQTWE+P D T GD DPIDV EIG ++
Sbjct: 126 DIKDGKLRYVANIFPHKGYIWNYGALPQTWEDPHRKDKSTDCCGDNDPIDVCEIGSKVLS 185
Query: 269 RGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFK 328
GE+I VK LG++ LID+G+TDWKIIAINVNDP A+K +D+ D++ + PGYL+AT WF+
Sbjct: 186 CGEVIPVKILGILALIDQGETDWKIIAINVNDPEASKFHDIDDVKKYKPGYLEATLNWFR 245
Query: 329 IYKIPDGKPEN 339
YK+P+GKPEN
Sbjct: 246 FYKVPEGKPEN 256
>UNIPROTKB|Q9H2U2 [details] [associations]
symbol:PPA2 "Inorganic pyrophosphatase 2, mitochondrial"
species:9606 "Homo sapiens" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0004427 "inorganic diphosphatase
activity" evidence=TAS] [GO:0005759 "mitochondrial matrix"
evidence=TAS] [GO:0006418 "tRNA aminoacylation for protein
translation" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0071344 "diphosphate metabolic process"
evidence=TAS] Reactome:REACT_71 Reactome:REACT_21259
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0000287
GO:GO:0005759 GO:GO:0006796 GO:GO:0006418 KO:K01507 BRENDA:3.6.1.1
GO:GO:0004427 eggNOG:COG0221 OMA:KSTHQCW Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 EMBL:AB026722 EMBL:AF217187
EMBL:AK000466 EMBL:AK297096 EMBL:AC004066 EMBL:AC106888
EMBL:BC022803 EMBL:BC057219 EMBL:AF161473 EMBL:AL136655
IPI:IPI00301109 IPI:IPI00470502 IPI:IPI00470503 IPI:IPI00470504
RefSeq:NP_008834.3 RefSeq:NP_789842.2 RefSeq:NP_789843.2
RefSeq:NP_789845.1 UniGene:Hs.654957 ProteinModelPortal:Q9H2U2
SMR:Q9H2U2 IntAct:Q9H2U2 STRING:Q9H2U2 PhosphoSite:Q9H2U2
DMDM:116242592 OGP:Q9H2U2 PaxDb:Q9H2U2 PeptideAtlas:Q9H2U2
PRIDE:Q9H2U2 DNASU:27068 Ensembl:ENST00000341695
Ensembl:ENST00000348706 Ensembl:ENST00000354147
Ensembl:ENST00000357415 Ensembl:ENST00000509031 GeneID:27068
KEGG:hsa:27068 UCSC:uc003hxl.3 UCSC:uc003hxn.3 UCSC:uc003hxp.3
CTD:27068 GeneCards:GC04M106290 HGNC:HGNC:28883 HPA:HPA031671
MIM:609988 neXtProt:NX_Q9H2U2 PharmGKB:PA142671159
HOVERGEN:HBG000491 OrthoDB:EOG4KPTBC PhylomeDB:Q9H2U2 ChiTaRS:PPA2
GenomeRNAi:27068 NextBio:49643 ArrayExpress:Q9H2U2 Bgee:Q9H2U2
CleanEx:HS_PPA2 Genevestigator:Q9H2U2 GermOnline:ENSG00000138777
GO:GO:0071344 Uniprot:Q9H2U2
Length = 334
Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
Identities = 117/199 (58%), Positives = 142/199 (71%)
Query: 156 YKGSENGLISPFHDIPLYSNVKDK---------------IFNMVVEIPRWTNAKMEINLN 200
+K ISPFHDIPL N K++ +FNM+VEIPRWTNAKMEI
Sbjct: 52 FKNVTGHYISPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATK 111
Query: 201 EPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVL 260
EP+NPIKQ +K G LRYVAN+FP+ GYIWNYG LPQTWE+P E D T GD DPIDV
Sbjct: 112 EPMNPIKQYVKDGKLRYVANIFPYKGYIWNYGTLPQTWEDPHEKDKSTNCFGDNDPIDVC 171
Query: 261 EIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYL 320
EIG +I GE+I VK LG++ LIDEG+TDWK+IAIN NDP A+K +D+ D++ PGYL
Sbjct: 172 EIGSKILSCGEVIHVKILGILALIDEGETDWKLIAINANDPEASKFHDIDDVKKFKPGYL 231
Query: 321 KATNEWFKIYKIPDGKPEN 339
+AT WF++YK+PDGKPEN
Sbjct: 232 EATLNWFRLYKVPDGKPEN 250
>MGI|MGI:1922026 [details] [associations]
symbol:Ppa2 "pyrophosphatase (inorganic) 2" species:10090
"Mus musculus" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0004427 "inorganic diphosphatase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 MGI:MGI:1922026
GO:GO:0005739 GO:GO:0000287 GO:GO:0006796 KO:K01507 GO:GO:0004427
eggNOG:COG0221 HOGENOM:HOG000195569 OMA:KSTHQCW Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 CTD:27068 HOVERGEN:HBG000491
OrthoDB:EOG4KPTBC ChiTaRS:PPA2 EMBL:AK003660 EMBL:AK090384
EMBL:AK143475 EMBL:BC011417 IPI:IPI00127050 IPI:IPI00408727
RefSeq:NP_666253.1 UniGene:Mm.210305 ProteinModelPortal:Q91VM9
SMR:Q91VM9 STRING:Q91VM9 PhosphoSite:Q91VM9
REPRODUCTION-2DPAGE:Q91VM9 PaxDb:Q91VM9 PRIDE:Q91VM9
Ensembl:ENSMUST00000029644 Ensembl:ENSMUST00000125858 GeneID:74776
KEGG:mmu:74776 UCSC:uc008rkm.1 GeneTree:ENSGT00390000017004
InParanoid:Q91VM9 NextBio:341614 Bgee:Q91VM9 CleanEx:MM_PPA2
Genevestigator:Q91VM9 GermOnline:ENSMUSG00000028013 Uniprot:Q91VM9
Length = 330
Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
Identities = 116/191 (60%), Positives = 139/191 (72%)
Query: 164 ISPFHDIPLYSNVKDK---------------IFNMVVEIPRWTNAKMEINLNEPLNPIKQ 208
ISPFHDIPL ++ K++ +FNMVVEIPRWTNAKMEI EPLNPIKQ
Sbjct: 55 ISPFHDIPLKADCKEEHDIPRKKARNDEYENLFNMVVEIPRWTNAKMEIATEEPLNPIKQ 114
Query: 209 DIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAK 268
DIK G LRY N+FPH GYIWNYGALPQTWE+P D T GD DPIDV EIG ++
Sbjct: 115 DIKNGKLRYTPNIFPHKGYIWNYGALPQTWEDPHLRDKSTDCCGDNDPIDVCEIGSKVLS 174
Query: 269 RGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFK 328
RG+++ VK LG + LID+ +TDWKIIAINVNDP A K +D+ D++ PGYL+AT WF+
Sbjct: 175 RGDVVHVKILGTLALIDQSETDWKIIAINVNDPEAEKFHDIDDVKKFKPGYLEATLNWFR 234
Query: 329 IYKIPDGKPEN 339
+YK+PDGKPEN
Sbjct: 235 LYKVPDGKPEN 245
>UNIPROTKB|J9P5Y0 [details] [associations]
symbol:PPA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006796 "phosphate-containing compound
metabolic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 GO:GO:0004427 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 GeneTree:ENSGT00390000017004
EMBL:AAEX03002795 EMBL:AAEX03002796 Ensembl:ENSCAFT00000043974
Uniprot:J9P5Y0
Length = 238
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 106/157 (67%), Positives = 131/157 (83%)
Query: 183 MVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPD 242
MVVE+PRW+NAKMEI +PLNPIKQD+KKG LRYVAN+FP+ GYIWNYGA+PQTWE+P
Sbjct: 1 MVVEVPRWSNAKMEIATKDPLNPIKQDVKKGKLRYVANLFPYKGYIWNYGAIPQTWEDPG 60
Query: 243 ETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPN 302
D HTG GD DPIDV EIG ++ RGEII+VK LG++ +IDEG+TDWK+IAINV+DP+
Sbjct: 61 HNDKHTGCCGDNDPIDVCEIGSKVCARGEIIRVKVLGILAMIDEGETDWKVIAINVDDPD 120
Query: 303 AAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
AA ND+ D++ PGYL+AT +WF+ YK+PDGKPEN
Sbjct: 121 AANYNDINDVKRLKPGYLEATVDWFRRYKVPDGKPEN 157
>POMBASE|SPAC3A12.02 [details] [associations]
symbol:SPAC3A12.02 "mitochondrial inorganic
diphosphatase (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000287 "magnesium ion binding" evidence=ISS] [GO:0004427
"inorganic diphosphatase activity" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO;IDA] [GO:0006796 "phosphate-containing
compound metabolic process" evidence=ISO] [GO:0009060 "aerobic
respiration" evidence=ISO] InterPro:IPR008162 Pfam:PF00719
PROSITE:PS00387 PomBase:SPAC3A12.02 GO:GO:0005739 EMBL:CU329670
GO:GO:0000287 GO:GO:0006796 GO:GO:0009060 KO:K01507 GO:GO:0004427
eggNOG:COG0221 HOGENOM:HOG000195569 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 PIR:T38670 RefSeq:NP_593328.1
ProteinModelPortal:P87118 SMR:P87118 STRING:P87118
EnsemblFungi:SPAC3A12.02.1 GeneID:2542957 KEGG:spo:SPAC3A12.02
OMA:WHYISES OrthoDB:EOG486CPK NextBio:20803992 Uniprot:P87118
Length = 286
Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
Identities = 115/184 (62%), Positives = 139/184 (75%)
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNL 215
YK N IS FHD+PL S+ KD FNMV EIPRWT AK EI+L P +PIKQD+K G L
Sbjct: 29 YKN--NKPISFFHDVPLTSD-KDT-FNMVTEIPRWTQAKCEISLTSPFHPIKQDLKNGKL 84
Query: 216 RYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQV 275
RYVAN FP+HG+IWNYGALPQTWE+P+ D+ T KGDGDP+DV EIG I G+I QV
Sbjct: 85 RYVANSFPYHGFIWNYGALPQTWEDPNVIDSRTKMKGDGDPLDVCEIGGSIGYIGQIKQV 144
Query: 276 KALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDG 335
K LG +GLID+G+TDWKI+AI++NDP A LND++D++ P L T +WF IYKIPDG
Sbjct: 145 KVLGALGLIDQGETDWKILAIDINDPRAKLLNDISDVQNLMPRLLPCTRDWFAIYKIPDG 204
Query: 336 KPEN 339
KP+N
Sbjct: 205 KPKN 208
Score = 117 (46.2 bits), Expect = 0.00028, P = 0.00028
Identities = 27/54 (50%), Positives = 33/54 (61%)
Query: 365 VSSRLETPPLIGSSGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
++ +L TP N IS FHD+PL S+ KD FNMV EIPRWT AK E+
Sbjct: 15 ITGKLNTPDFRVYCYKNNKPISFFHDVPLTSD-KDT-FNMVTEIPRWTQAKCEI 66
>RGD|1307965 [details] [associations]
symbol:Ppa2 "pyrophosphatase (inorganic) 2" species:10116
"Rattus norvegicus" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387
RGD:1307965 GO:GO:0005739 GO:GO:0000287 GO:GO:0006796 KO:K01507
GO:GO:0004427 OMA:KSTHQCW Gene3D:3.90.80.10 PANTHER:PTHR10286
SUPFAM:SSF50324 CTD:27068 OrthoDB:EOG4KPTBC
GeneTree:ENSGT00390000017004 IPI:IPI00369195 RefSeq:NP_001129343.1
UniGene:Rn.37581 PRIDE:D4A830 Ensembl:ENSRNOT00000016195
GeneID:310856 KEGG:rno:310856 NextBio:662755 Uniprot:D4A830
Length = 330
Score = 615 (221.5 bits), Expect = 5.0e-60, P = 5.0e-60
Identities = 114/191 (59%), Positives = 137/191 (71%)
Query: 164 ISPFHDIPLYSNVKDK---------------IFNMVVEIPRWTNAKMEINLNEPLNPIKQ 208
ISPFHDIPL ++ +++ FNMVVEIPRWTNAKMEI EPLNPIKQ
Sbjct: 55 ISPFHDIPLKADCEEEHGIPRKKARNDEYKASFNMVVEIPRWTNAKMEIATEEPLNPIKQ 114
Query: 209 DIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAK 268
D K G LRY N+FPH GYIWNYGALPQTWE+P D T GD DPIDV EIG ++
Sbjct: 115 DTKNGRLRYTPNIFPHKGYIWNYGALPQTWEDPHLKDKSTNCCGDNDPIDVCEIGSKVLS 174
Query: 269 RGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFK 328
RG+++ VK LG + LID+ +TDWKIIAINVNDP A K +D+ D++ PGYL+AT WF+
Sbjct: 175 RGDVVHVKILGTLALIDQSETDWKIIAINVNDPEAEKFHDIDDVKKFKPGYLEATVNWFR 234
Query: 329 IYKIPDGKPEN 339
+YK+PDGKPEN
Sbjct: 235 LYKVPDGKPEN 245
>UNIPROTKB|E2QRM6 [details] [associations]
symbol:PPA2 "Inorganic pyrophosphatase 2, mitochondrial"
species:9606 "Homo sapiens" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 GO:GO:0004427 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 EMBL:AC004066 EMBL:AC106888
HGNC:HGNC:28883 ChiTaRS:PPA2 IPI:IPI00654717
ProteinModelPortal:E2QRM6 SMR:E2QRM6 PRIDE:E2QRM6
Ensembl:ENST00000380004 ArrayExpress:E2QRM6 Bgee:E2QRM6
Uniprot:E2QRM6
Length = 316
Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
Identities = 105/184 (57%), Positives = 132/184 (71%)
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNL 215
+K ISPFHDIPL N K++ N + + + N + EI EP+NPIKQ +K G L
Sbjct: 52 FKNVTGHYISPFHDIPLKVNSKEE--NGI-PMKKARNDEYEIATKEPMNPIKQYVKDGKL 108
Query: 216 RYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQV 275
RYVAN+FP+ GYIWNYG LPQTWE+P E D T GD DPIDV EIG +I GE+I V
Sbjct: 109 RYVANIFPYKGYIWNYGTLPQTWEDPHEKDKSTNCFGDNDPIDVCEIGSKILSCGEVIHV 168
Query: 276 KALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDG 335
K LG++ LIDEG+TDWK+IAIN NDP A+K +D+ D++ PGYL+AT WF++YK+PDG
Sbjct: 169 KILGILALIDEGETDWKLIAINANDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDG 228
Query: 336 KPEN 339
KPEN
Sbjct: 229 KPEN 232
>UNIPROTKB|Q5SQT6 [details] [associations]
symbol:PPA1 "Inorganic pyrophosphatase" species:9606 "Homo
sapiens" [GO:0000287 "magnesium ion binding" evidence=IEA]
[GO:0004427 "inorganic diphosphatase activity" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 EMBL:AL731540 GO:GO:0004427
HOGENOM:HOG000195569 Gene3D:3.90.80.10 PANTHER:PTHR10286
SUPFAM:SSF50324 HOVERGEN:HBG000491 UniGene:Hs.437403 HGNC:HGNC:9226
ChiTaRS:PPA1 IPI:IPI00643288 SMR:Q5SQT6 Ensembl:ENST00000373230
Uniprot:Q5SQT6
Length = 178
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 100/151 (66%), Positives = 123/151 (81%)
Query: 157 KGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLR 216
K + ISPFHDIP+Y++ KD +F+MVVE+PRW+NAKMEI +PLNPIKQD+KKG LR
Sbjct: 22 KNEKGQYISPFHDIPIYAD-KD-VFHMVVEVPRWSNAKMEIATKDPLNPIKQDVKKGKLR 79
Query: 217 YVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVK 276
YVAN+FP+ GYIWNYGA+PQTWE+P D HTG GD DPIDV EIG ++ RGEII VK
Sbjct: 80 YVANLFPYKGYIWNYGAIPQTWEDPGHNDKHTGCCGDNDPIDVCEIGSKVCARGEIIGVK 139
Query: 277 ALGVIGLIDEGQTDWKIIAINVNDPNAAKLN 307
LG++ +IDEG+TDWK+IAINV+DP+AA N
Sbjct: 140 VLGILAMIDEGETDWKVIAINVDDPDAANYN 170
Score = 135 (52.6 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 26/40 (65%), Positives = 35/40 (87%)
Query: 380 SENG-LISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+E G ISPFHDIP+Y++ KD +F+MVVE+PRW+NAKME+
Sbjct: 23 NEKGQYISPFHDIPIYAD-KD-VFHMVVEVPRWSNAKMEI 60
>CGD|CAL0005294 [details] [associations]
symbol:orf19.4807 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0009060 "aerobic respiration"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387
CGD:CAL0005294 GO:GO:0005737 GO:GO:0000287 GO:GO:0006796
EMBL:AACQ01000001 EMBL:AACQ01000002 KO:K01507 GO:GO:0004427
eggNOG:COG0221 HOGENOM:HOG000195569 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 RefSeq:XP_723303.1
RefSeq:XP_723493.1 ProteinModelPortal:Q5APF8 SMR:Q5APF8
STRING:Q5APF8 GeneID:3634857 GeneID:3635008 KEGG:cal:CaO19.12270
KEGG:cal:CaO19.4807 Uniprot:Q5APF8
Length = 324
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 109/220 (49%), Positives = 143/220 (65%)
Query: 156 YKGSENG-LISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGN 214
Y + NG ++S FHDI L N + + NMVVEIPRWTNAK EIN P NPI QDIKKG
Sbjct: 59 YATTPNGKIVSYFHDIALNLNKETREANMVVEIPRWTNAKFEINTKTPGNPIVQDIKKGR 118
Query: 215 LRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQ 274
+R+V N+FPHHGYI NYGA PQTWE+P T H G GD DP+DV EIG +I G++ +
Sbjct: 119 VRFVKNLFPHHGYIHNYGAFPQTWEDP--TTKHHGLFGDNDPLDVCEIGSKILSTGDVRR 176
Query: 275 VKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPD 334
VK LG I LID+G+ DWK+I INV+DP ++ND+ D++ PG L T +WF+ YK+ D
Sbjct: 177 VKILGSIALIDDGELDWKVIVINVHDPLFKEVNDINDLDEKCPGLLDTTRQWFRDYKLAD 236
Query: 335 GKPEN--VLNTRVEGESSQ-GFIPGCRGRTEQVVSSRLET 371
GKP+N N + + I C +Q+++ +T
Sbjct: 237 GKPQNDFAFNGEYKNANETIDIIEQCHKSWQQLINGETKT 276
Score = 118 (46.6 bits), Expect = 0.00028, P = 0.00028
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 371 TPPLIGSSGSENG-LISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
TP + + NG ++S FHDI L N + + NMVVEIPRWTNAK E+
Sbjct: 53 TPDYTNYATTPNGKIVSYFHDIALNLNKETREANMVVEIPRWTNAKFEI 101
>UNIPROTKB|H0Y9D8 [details] [associations]
symbol:PPA2 "Inorganic pyrophosphatase 2, mitochondrial"
species:9606 "Homo sapiens" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 GO:GO:0004427 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 EMBL:AC004066 EMBL:AC106888
HGNC:HGNC:28883 ChiTaRS:PPA2 Ensembl:ENST00000508518 Uniprot:H0Y9D8
Length = 226
Score = 552 (199.4 bits), Expect = 2.4e-53, P = 2.4e-53
Identities = 102/181 (56%), Positives = 129/181 (71%)
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNL 215
+K ISPFHDIPL N K++ N + + + N + EI EP+NPIKQ +K G L
Sbjct: 49 FKNVTGHYISPFHDIPLKVNSKEE--NGI-PMKKARNDEYEIATKEPMNPIKQYVKDGKL 105
Query: 216 RYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQV 275
RYVAN+FP+ GYIWNYG LPQTWE+P E D T GD DPIDV EIG +I GE+I V
Sbjct: 106 RYVANIFPYKGYIWNYGTLPQTWEDPHEKDKSTNCFGDNDPIDVCEIGSKILSCGEVIHV 165
Query: 276 KALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDG 335
K LG++ LIDEG+TDWK+IAIN NDP A+K +D+ D++ PGYL+AT WF++YK+PDG
Sbjct: 166 KILGILALIDEGETDWKLIAINANDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDG 225
Query: 336 K 336
K
Sbjct: 226 K 226
>SGD|S000004880 [details] [associations]
symbol:PPA2 "Mitochondrial inorganic pyrophosphatase"
species:4932 "Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IMP;IDA] [GO:0004427 "inorganic diphosphatase
activity" evidence=IEA;ISS;IMP] [GO:0006796 "phosphate-containing
compound metabolic process" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0009060 "aerobic
respiration" evidence=IMP] [GO:0000287 "magnesium ion binding"
evidence=IEA] InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387
SGD:S000004880 GO:GO:0005739 GO:GO:0000287 EMBL:BK006946
GO:GO:0006796 GO:GO:0009060 KO:K01507 GO:GO:0004427 EMBL:Z49260
eggNOG:COG0221 HOGENOM:HOG000195569 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 EMBL:M81880 PIR:A40867
RefSeq:NP_013994.1 ProteinModelPortal:P28239 SMR:P28239
DIP:DIP-1522N IntAct:P28239 MINT:MINT-385495 STRING:P28239
PaxDb:P28239 PeptideAtlas:P28239 EnsemblFungi:YMR267W GeneID:855309
KEGG:sce:YMR267W CYGD:YMR267w OMA:IMVINTE OrthoDB:EOG43FM63
NextBio:978991 Genevestigator:P28239 GermOnline:YMR267W
Uniprot:P28239
Length = 310
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 105/227 (46%), Positives = 141/227 (62%)
Query: 154 KPYKGSENGLI-SPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKK 212
K Y NG + S FHD+PL N +K NM+VE+PRWT K EI+ NPI QD K
Sbjct: 48 KKYLTLLNGEVGSFFHDVPLDLNEHEKTVNMIVEVPRWTTGKFEISKELRFNPIVQDTKN 107
Query: 213 GNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHT-GQ-----KGDGDPIDVLEIGERI 266
G LR+V N+FP+HGYI NYGA+PQTWE+P T H G+ KGD DP+D EIG +
Sbjct: 108 GKLRFVNNIFPYHGYIHNYGAIPQTWEDP--TIEHKLGKCDVALKGDNDPLDCCEIGSDV 165
Query: 267 AKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEW 326
+ G I +VK LG + LID+G+ DWK+I I+VNDP ++K++D+ IE +FPG L T EW
Sbjct: 166 LEMGSIKKVKVLGSLALIDDGELDWKVIVIDVNDPLSSKIDDLEKIEEYFPGILDTTREW 225
Query: 327 FKIYKIPDGKPENVLNTRVEGESSQGFIPG---CRGRTEQVVSSRLE 370
F+ YK+P GKP N + ++S I C + ++S L+
Sbjct: 226 FRKYKVPAGKPLNSFAFHEQYQNSNKTIQTIKKCHNSWKNLISGSLQ 272
>UNIPROTKB|Q93Y52 [details] [associations]
symbol:ppa1 "Soluble inorganic pyrophosphatase 1,
chloroplastic" species:3055 "Chlamydomonas reinhardtii" [GO:0004427
"inorganic diphosphatase activity" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] InterPro:IPR008162 Pfam:PF00719
PROSITE:PS00387 GO:GO:0009507 GO:GO:0046686 GO:GO:0009570
GO:GO:0000287 GO:GO:0009651 GO:GO:0042742 GO:GO:0009941
GO:GO:0006796 GO:GO:0009579 KO:K01507 BRENDA:3.6.1.1 GO:GO:0004427
HSSP:P00817 eggNOG:COG0221 ProtClustDB:PLN02707 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 EMBL:AJ298231
RefSeq:XP_001702577.1 UniGene:Cre.4641 ProteinModelPortal:Q93Y52
STRING:Q93Y52 PRIDE:Q93Y52 GeneID:5728217
KEGG:cre:CHLREDRAFT_133620 OMA:PENKFGF Uniprot:Q93Y52
Length = 280
Score = 509 (184.2 bits), Expect = 8.5e-49, P = 8.5e-49
Identities = 94/176 (53%), Positives = 126/176 (71%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+S +H+IPLY+ D + + EIP+ T+AKME+ +EP PIKQD+KKG LR+ +P
Sbjct: 70 VSCWHEIPLYAG--DGHLHYICEIPKETSAKMEVATDEPRTPIKQDVKKGKLRF----YP 123
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
++ WNYG LPQTWE+P TDA G GD DP+DV+EIG AKRG + +VK +GV+ +
Sbjct: 124 YN-INWNYGMLPQTWEDPGHTDATLGAAGDNDPVDVVEIGAAAAKRGGVYKVKPVGVLAM 182
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
ID+G+ DWK+IAI+ +DP AA NDV D+E HFPG ++ EWF+ YKIPDGKP N
Sbjct: 183 IDDGELDWKVIAISADDPKAALCNDVEDVEKHFPGEIQKVLEWFRDYKIPDGKPAN 238
>TAIR|locus:2144766 [details] [associations]
symbol:PPa6 "pyrophosphorylase 6" species:3702
"Arabidopsis thaliana" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA;IGI;IDA] [GO:0006796 "phosphate-containing compound
metabolic process" evidence=IEA] [GO:0008152 "metabolic process"
evidence=ISS] [GO:0009507 "chloroplast" evidence=ISM;IDA]
[GO:0016020 "membrane" evidence=ISS] [GO:0016462 "pyrophosphatase
activity" evidence=ISS] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0046686 "response to cadmium ion" evidence=IEP] [GO:0009579
"thylakoid" evidence=IDA] [GO:0042742 "defense response to
bacterium" evidence=IEP;RCA] [GO:0009651 "response to salt stress"
evidence=IEP] [GO:0005829 "cytosol" evidence=RCA] [GO:0000165 "MAPK
cascade" evidence=RCA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009409 "response to cold" evidence=RCA]
[GO:0009595 "detection of biotic stimulus" evidence=RCA]
[GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA]
[GO:0009697 "salicylic acid biosynthetic process" evidence=RCA]
[GO:0009814 "defense response, incompatible interaction"
evidence=RCA] [GO:0009862 "systemic acquired resistance, salicylic
acid mediated signaling pathway" evidence=RCA] [GO:0009867
"jasmonic acid mediated signaling pathway" evidence=RCA]
[GO:0010200 "response to chitin" evidence=RCA] [GO:0010310
"regulation of hydrogen peroxide metabolic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0019761 "glucosinolate biosynthetic process"
evidence=RCA] [GO:0031348 "negative regulation of defense response"
evidence=RCA] [GO:0043900 "regulation of multi-organism process"
evidence=RCA] [GO:0050832 "defense response to fungus"
evidence=RCA] [GO:0009536 "plastid" evidence=IDA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0046686 GO:GO:0009570 GO:GO:0000287
GO:GO:0009651 GO:GO:0042742 GO:GO:0009941 GO:GO:0006796
GO:GO:0009579 KO:K01507 BRENDA:3.6.1.1 GO:GO:0004427 EMBL:AB020752
EMBL:AL353994 EMBL:AY551439 EMBL:AJ252210 EMBL:AY045945
EMBL:AY079355 EMBL:AY087275 IPI:IPI00524195 PIR:T49933
RefSeq:NP_196527.1 UniGene:At.1794 UniGene:At.21648 HSSP:P00817
ProteinModelPortal:Q9LXC9 SMR:Q9LXC9 IntAct:Q9LXC9 STRING:Q9LXC9
PaxDb:Q9LXC9 PRIDE:Q9LXC9 ProMEX:Q9LXC9 EnsemblPlants:AT5G09650.1
GeneID:830824 KEGG:ath:AT5G09650 TAIR:At5g09650 eggNOG:COG0221
HOGENOM:HOG000195569 InParanoid:Q9LXC9 OMA:KSTHQCW PhylomeDB:Q9LXC9
ProtClustDB:PLN02707 Genevestigator:Q9LXC9 GermOnline:AT5G09650
Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324 Uniprot:Q9LXC9
Length = 300
Score = 499 (180.7 bits), Expect = 9.8e-48, P = 9.8e-48
Identities = 93/177 (52%), Positives = 125/177 (70%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+SP+HDIPL + D +FN +VEIP+ + AKME+ +E PIKQD KKG LRY +P
Sbjct: 90 VSPWHDIPL--TLGDGVFNFIVEIPKESKAKMEVATDEDFTPIKQDTKKGKLRY----YP 143
Query: 224 HHGYIWNYGALPQTWENPDETDAHT-GQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIG 282
++ WNYG LPQTWE+P ++ G GD DP+DV+EIGE K G+I+++K L +
Sbjct: 144 YN-INWNYGLLPQTWEDPSHANSEVEGCFGDNDPVDVVEIGETQRKIGDILKIKPLAALA 202
Query: 283 LIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
+IDEG+ DWKI+AI+++DP A +NDV D+E HFPG L A +WF+ YKIPDGKP N
Sbjct: 203 MIDEGELDWKIVAISLDDPKAHLVNDVEDVEKHFPGTLTAIRDWFRDYKIPDGKPAN 259
>DICTYBASE|DDB_G0284265 [details] [associations]
symbol:ppa1 "inorganic pyrophosphatase" species:44689
"Dictyostelium discoideum" [GO:0045335 "phagocytic vesicle"
evidence=IDA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0004427 "inorganic diphosphatase activity" evidence=IEA;ISS]
[GO:0000287 "magnesium ion binding" evidence=IEA] [GO:0005829
"cytosol" evidence=ISS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR008162
Pfam:PF00719 PROSITE:PS00387 dictyBase:DDB_G0284265 GO:GO:0005829
GO:GO:0045335 GenomeReviews:CM000153_GR GO:GO:0000287 GO:GO:0006796
EMBL:AAFI02000064 KO:K01507 GO:GO:0004427 HSSP:P00817
eggNOG:COG0221 Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
OMA:WEDPGHS RefSeq:XP_638687.1 ProteinModelPortal:Q54PV8 SMR:Q54PV8
STRING:Q54PV8 PRIDE:Q54PV8 EnsemblProtists:DDB0233791
GeneID:8624517 KEGG:ddi:DDB_G0284265 ProtClustDB:CLSZ2728945
Uniprot:Q54PV8
Length = 279
Score = 497 (180.0 bits), Expect = 1.6e-47, P = 1.6e-47
Identities = 96/180 (53%), Positives = 121/180 (67%)
Query: 160 ENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVA 219
+N +S FHD+PL+ N + +I NM+VEIPR TNAK+EI E +NPIKQD+K G LR+V
Sbjct: 44 DNKPVSSFHDVPLWVNKEKQIVNMLVEIPRGTNAKLEIATKEYMNPIKQDVKDGKLRFV- 102
Query: 220 NVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALG 279
H Y +NYGALPQTWE+P+ T TG KGD DP+D EIG GE QVK LG
Sbjct: 103 ----HDKYPFNYGALPQTWESPEHTHPSTGAKGDNDPLDACEIGSGQGVTGEFKQVKVLG 158
Query: 280 VIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
V +ID G+TDWKI+ I+VNDP A+++N DIE H PG + + + YKIPDGK N
Sbjct: 159 VFAMIDAGETDWKILCIDVNDPIASQINSQEDIEKHLPGKINEVYTFLRDYKIPDGKGPN 218
Score = 116 (45.9 bits), Expect = 0.00034, P = 0.00034
Identities = 21/38 (55%), Positives = 30/38 (78%)
Query: 381 ENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+N +S FHD+PL+ N + +I NM+VEIPR TNAK+E+
Sbjct: 44 DNKPVSSFHDVPLWVNKEKQIVNMLVEIPRGTNAKLEI 81
>UNIPROTKB|B4DFH3 [details] [associations]
symbol:PPA2 "Inorganic pyrophosphatase 2, mitochondrial"
species:9606 "Homo sapiens" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 GO:GO:0004427 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 EMBL:AC004066 EMBL:AC106888
UniGene:Hs.654957 HGNC:HGNC:28883 ChiTaRS:PPA2 EMBL:AK294097
IPI:IPI00910509 SMR:B4DFH3 STRING:B4DFH3 Ensembl:ENST00000310267
UCSC:uc011cfa.1 Uniprot:B4DFH3
Length = 202
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 87/138 (63%), Positives = 106/138 (76%)
Query: 178 DKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQT 237
+ +FNM+VEIPRWTNAKMEI EP+NPIKQ +K G LRYVAN+FP+ GYIWNYG LPQT
Sbjct: 10 ENLFNMIVEIPRWTNAKMEIATKEPMNPIKQYVKDGKLRYVANIFPYKGYIWNYGTLPQT 69
Query: 238 WENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAIN 297
WE+P E D T GD DPIDV EIG +I GE+I VK LG++ LIDEG+TDWK+IAIN
Sbjct: 70 WEDPHEKDKSTNCFGDNDPIDVCEIGSKILSCGEVIHVKILGILALIDEGETDWKLIAIN 129
Query: 298 VNDPNAAKLNDVADIETH 315
NDP A+K + + +I +
Sbjct: 130 ANDPEASKFHGLRNIPVY 147
>UNIPROTKB|D6RGV9 [details] [associations]
symbol:PPA2 "Inorganic pyrophosphatase 2, mitochondrial"
species:9606 "Homo sapiens" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 GO:GO:0004427 HOGENOM:HOG000195569
Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324 EMBL:AC004066
EMBL:AC106888 HGNC:HGNC:28883 ChiTaRS:PPA2 IPI:IPI00967911
ProteinModelPortal:D6RGV9 SMR:D6RGV9 Ensembl:ENST00000504028
ArrayExpress:D6RGV9 Bgee:D6RGV9 Uniprot:D6RGV9
Length = 195
Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
Identities = 86/144 (59%), Positives = 101/144 (70%)
Query: 156 YKGSENGLISPFHDIPLYSN---VK-------DKIFNMVVEIPRWTNAKMEINLNEPLNP 205
+K ISPFHDIPL N +K + +FNM+VEIPRWTNAKMEI EP+NP
Sbjct: 52 FKNVTGHYISPFHDIPLKENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPMNP 111
Query: 206 IKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGER 265
IKQ +K G LRYVAN+FP+ GYIWNYG LPQTWE+P E D T GD DPIDV EIG +
Sbjct: 112 IKQYVKDGKLRYVANIFPYKGYIWNYGTLPQTWEDPHEKDKSTNCFGDNDPIDVCEIGSK 171
Query: 266 IAKRGEIIQVKALGVIGLIDEGQT 289
I GE+I VK LG++ LIDEG+T
Sbjct: 172 ILSCGEVIHVKILGILALIDEGET 195
Score = 120 (47.3 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 27/50 (54%), Positives = 32/50 (64%)
Query: 385 ISPFHDIPLYSN---VK-------DKIFNMVVEIPRWTNAKMEVGNAMEM 424
ISPFHDIPL N +K + +FNM+VEIPRWTNAKME+ M
Sbjct: 60 ISPFHDIPLKENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEIATKEPM 109
>UNIPROTKB|I3LM66 [details] [associations]
symbol:PPA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005739 "mitochondrion" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
[GO:0004427 "inorganic diphosphatase activity" evidence=IEA]
[GO:0000287 "magnesium ion binding" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005739
GO:GO:0000287 GO:GO:0006796 GO:GO:0004427 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 GeneTree:ENSGT00390000017004
EMBL:CU915612 EMBL:CU914193 Ensembl:ENSSSCT00000030394 OMA:KDESTDC
Uniprot:I3LM66
Length = 110
Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
Identities = 75/110 (68%), Positives = 88/110 (80%)
Query: 183 MVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPD 242
M+VE+PRWTNAKMEI EPLNPIKQD+K G LRYVAN+FPH GYIWNYGALPQTWE+P
Sbjct: 1 MIVEVPRWTNAKMEIATEEPLNPIKQDVKNGKLRYVANIFPHKGYIWNYGALPQTWEDPH 60
Query: 243 ETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWK 292
D T GD DPIDV EIG ++ RGE++ VK LG++ LID+G+TDWK
Sbjct: 61 RKDESTDCCGDNDPIDVCEIGSKVLSRGEVVHVKILGILALIDQGETDWK 110
>ASPGD|ASPL0000059364 [details] [associations]
symbol:AN0395 species:162425 "Emericella nidulans"
[GO:0006091 "generation of precursor metabolites and energy"
evidence=RCA] [GO:0004427 "inorganic diphosphatase activity"
evidence=RCA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000287
"magnesium ion binding" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 EMBL:BN001308 EMBL:AACD01000007 GO:GO:0006796
GO:GO:0004427 eggNOG:COG0221 HOGENOM:HOG000195569 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 RefSeq:XP_657999.1
ProteinModelPortal:Q5BGD5 EnsemblFungi:CADANIAT00002304
GeneID:2876171 KEGG:ani:AN0395.2 OMA:ESETKAG OrthoDB:EOG4RR9TB
Uniprot:Q5BGD5
Length = 332
Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
Identities = 85/211 (40%), Positives = 126/211 (59%)
Query: 164 ISPFHDIPLYSNVKDK-IFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVF 222
IS +HD+PLY + + I N VVEIPR T+ K+EI +EPLNPI D + G+ RYV +V+
Sbjct: 58 ISFWHDVPLYPHPPSRQIINFVVEIPRNTDGKIEIRRSEPLNPIFHDERDGSPRYVESVW 117
Query: 223 PHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIG 282
PH Y + YG++PQTWE+P+ T + GD DP+D+ +IG+ G++ QVK LG +
Sbjct: 118 PHKSYPFLYGSIPQTWESPNFKHDFTKEPGDNDPVDLFDIGQDQGFTGQVKQVKILGALA 177
Query: 283 LIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKP--ENV 340
L D G+TDWK++ I+V DP A ++D D+E + PG + + WF YK+ G V
Sbjct: 178 LNDGGETDWKVLGIDVRDPIAGLVDDFKDVEKYRPGLIASYRNWFTTYKVARGDSLIPIV 237
Query: 341 LNTRVEGESSQGFIPGCRGRTEQVVSSRLET 371
NT V + + G +VS +++
Sbjct: 238 NNTYVNATFAASVVQQSHGYWLDLVSGTVDS 268
>UNIPROTKB|D6R967 [details] [associations]
symbol:PPA2 "Inorganic pyrophosphatase 2, mitochondrial"
species:9606 "Homo sapiens" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737
GO:GO:0000287 GO:GO:0006796 GO:GO:0004427 HOGENOM:HOG000195569
Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324 EMBL:AC004066
EMBL:AC106888 HGNC:HGNC:28883 ChiTaRS:PPA2 IPI:IPI00968235
ProteinModelPortal:D6R967 SMR:D6R967 Ensembl:ENST00000510015
ArrayExpress:D6R967 Bgee:D6R967 Uniprot:D6R967
Length = 191
Score = 358 (131.1 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 62/104 (59%), Positives = 79/104 (75%)
Query: 236 QTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIA 295
+TWE+P E D T GD DPIDV EIG +I GE+I VK LG++ LIDEG+TDWK+IA
Sbjct: 74 ETWEDPHEKDKSTNCFGDNDPIDVCEIGSKILSCGEVIHVKILGILALIDEGETDWKLIA 133
Query: 296 INVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPEN 339
IN NDP A+K +D+ D++ PGYL+AT WF++YK+PDGKPEN
Sbjct: 134 INANDPEASKFHDIDDVKKFKPGYLEATLNWFRLYKVPDGKPEN 177
Score = 59 (25.8 bits), Expect = 2.4e-37, Sum P(2) = 2.4e-37
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 156 YKGSENGLISPFHDIPLYSNVKD 178
+K ISPFHDIPL N K+
Sbjct: 52 FKNVTGHYISPFHDIPLKVNSKE 74
>UNIPROTKB|D6RGI1 [details] [associations]
symbol:PPA2 "Inorganic pyrophosphatase 2, mitochondrial"
species:9606 "Homo sapiens" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0006796 "phosphate-containing compound metabolic
process" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 GO:GO:0005739 GO:GO:0000287
GO:GO:0006796 GO:GO:0004427 HOGENOM:HOG000195569 Gene3D:3.90.80.10
PANTHER:PTHR10286 SUPFAM:SSF50324 EMBL:AC004066 EMBL:AC106888
HGNC:HGNC:28883 ChiTaRS:PPA2 IPI:IPI00910509
ProteinModelPortal:D6RGI1 SMR:D6RGI1 Ensembl:ENST00000502596
ArrayExpress:D6RGI1 Bgee:D6RGI1 Uniprot:D6RGI1
Length = 88
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 54/79 (68%), Positives = 62/79 (78%)
Query: 178 DKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQT 237
+ +FNM+VEIPRWTNAKMEI EP+NPIKQ +K G LRYVAN+FP+ GYIWNYG LPQT
Sbjct: 10 ENLFNMIVEIPRWTNAKMEIATKEPMNPIKQYVKDGKLRYVANIFPYKGYIWNYGTLPQT 69
Query: 238 WENPDETDAHTGQKGDGDP 256
WE+P E D T GD DP
Sbjct: 70 WEDPHEKDKSTNCFGDNDP 88
Score = 94 (38.1 bits), Expect = 0.00068, P = 0.00068
Identities = 16/26 (61%), Positives = 20/26 (76%)
Query: 399 DKIFNMVVEIPRWTNAKMEVGNAMEM 424
+ +FNM+VEIPRWTNAKME+ M
Sbjct: 10 ENLFNMIVEIPRWTNAKMEIATKEPM 35
>UNIPROTKB|H0YAK2 [details] [associations]
symbol:PPA2 "Inorganic pyrophosphatase 2, mitochondrial"
species:9606 "Homo sapiens" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
InterPro:IPR008162 Pfam:PF00719 GO:GO:0005737 GO:GO:0000287
GO:GO:0006796 GO:GO:0004427 Gene3D:3.90.80.10 PANTHER:PTHR10286
SUPFAM:SSF50324 EMBL:AC004066 EMBL:AC106888 HGNC:HGNC:28883
ChiTaRS:PPA2 Ensembl:ENST00000515567 Uniprot:H0YAK2
Length = 69
Score = 210 (79.0 bits), Expect = 1.5e-16, P = 1.5e-16
Identities = 36/54 (66%), Positives = 43/54 (79%)
Query: 190 WTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDE 243
WTNAKMEI EP+NPIKQ +K G LRYVAN+FP+ GYIWNYG LPQ +P++
Sbjct: 2 WTNAKMEIATKEPMNPIKQYVKDGKLRYVANIFPYKGYIWNYGTLPQVSSSPNK 55
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 156 (60.0 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 30/67 (44%), Positives = 44/67 (65%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
L++KN+ + T+E+F+E F ++G I+ A L K+ADGKLKG GF+NY AVKA+ N
Sbjct: 221 LYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALN 280
Query: 95 KKPYKGK 101
G+
Sbjct: 281 DSELNGE 287
Score = 139 (54.0 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 28/65 (43%), Positives = 39/65 (60%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + T+E+F+E F ++G I+ A L K+ADGKLKG GF+NY AVKA+ N
Sbjct: 224 KNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEALNDSE 283
Query: 156 YKGSE 160
G +
Sbjct: 284 LNGEK 288
Score = 131 (51.2 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
LF+KNL + +E+ +E F YG I A++++ +GK KG GF+ ++ A KAI + N
Sbjct: 324 LFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKN 383
Query: 95 KKPYKGK 101
++ GK
Sbjct: 384 QQIVAGK 390
Score = 102 (41.0 bits), Expect = 3.8e-14, Sum P(2) = 3.8e-14
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+ +E+ +E F YG I A++++ +GK KG GF+ ++ A KAI + N++ G
Sbjct: 333 VDDEKLEEEFAPYGTITSAKVMRTENGKSKGFGFVCFSTPEEATKAITEKNQQIVAG 389
Score = 100 (40.3 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 20/58 (34%), Positives = 36/58 (62%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
G +FIKNL I + + F +GDI+ +++ + +GK KG GF+++ + +A +AI
Sbjct: 126 GNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAI 183
Score = 66 (28.3 bits), Expect = 0.00019, Sum P(2) = 0.00019
Identities = 16/69 (23%), Positives = 35/69 (50%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLK-GCGFINYANKISAVKAILKS 93
L++ +L ++E + F G + ++ ++A K G ++N+ + + KAI +
Sbjct: 40 LYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRKAIEQL 99
Query: 94 NKKPYKGKI 102
N P KG++
Sbjct: 100 NYTPIKGRL 108
>FB|FBgn0260456 [details] [associations]
symbol:CG4806 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE013599 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:Q9V535
GeneTree:ENSGT00550000074976 KO:K14573 OMA:MHALECL ChiTaRS:CG33228
FlyBase:FBgn0260456 EMBL:BT023833 RefSeq:NP_611955.2
UniGene:Dm.2200 SMR:Q9W124 STRING:Q9W124 EnsemblMetazoa:FBtr0072332
GeneID:37948 KEGG:dme:Dmel_CG4806 UCSC:CG4806-RA InParanoid:Q9W124
GenomeRNAi:37948 NextBio:806205 Uniprot:Q9W124
Length = 657
Score = 180 (68.4 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 33/70 (47%), Positives = 44/70 (62%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 91
R RL ++N+ +K TE+ +EHFGQ+G + D +LK DGKL GC F+ Y A KAIL
Sbjct: 47 RARLIVRNISYKSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCAFVQYETINQATKAIL 106
Query: 92 KSNKKPYKGK 101
SN K G+
Sbjct: 107 NSNGKELLGR 116
Score = 149 (57.5 bits), Expect = 3.4e-07, P = 3.4e-07
Identities = 29/58 (50%), Positives = 35/58 (60%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
K TE+ +EHFGQ+G + D +LK DGKL GC F+ Y A KAIL SN K G
Sbjct: 58 KSTEDSLREHFGQWGTLEDVHILKRGDGKLVGCAFVQYETINQATKAILNSNGKELLG 115
Score = 54 (24.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 124 KNADGKLKGCGFINYANKISAVKAILKSNKKP 155
++ GK KG GF+++ A+ A+ K N P
Sbjct: 420 EHPQGKSKGFGFLSFDTHQRALAALRKLNNNP 451
>TAIR|locus:2084066 [details] [associations]
symbol:PPa4 "pyrophosphorylase 4" species:3702
"Arabidopsis thaliana" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=ISM;IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISS]
[GO:0016020 "membrane" evidence=ISS] [GO:0046686 "response to
cadmium ion" evidence=IEP] [GO:0005829 "cytosol" evidence=IDA]
HAMAP:MF_00209 InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387
GO:GO:0005829 GO:GO:0046686 EMBL:CP002686 GO:GO:0000287
EMBL:AL132966 GO:GO:0006796 KO:K01507 GO:GO:0004427
Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
ProtClustDB:PLN02373 HSSP:O59570 EMBL:AK226578 IPI:IPI00524492
PIR:T45902 RefSeq:NP_190930.1 UniGene:At.19820
ProteinModelPortal:Q9LFF9 SMR:Q9LFF9 STRING:Q9LFF9 PRIDE:Q9LFF9
EnsemblPlants:AT3G53620.1 GeneID:824530 KEGG:ath:AT3G53620
TAIR:At3g53620 InParanoid:Q9LFF9 OMA:GVANYKK PhylomeDB:Q9LFF9
Genevestigator:Q9LFF9 Uniprot:Q9LFF9
Length = 216
Score = 130 (50.8 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 253 DGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADI 312
D DPIDVL I + G ++ KA+G++ +ID+G+ D KIIA+ +DP ND++++
Sbjct: 102 DSDPIDVLVIMQEPVIPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDISEL 161
Query: 313 ETHFPGYLKATNEWFKIYKIPDGK 336
H ++ +F+ YK + K
Sbjct: 162 PPHRMAEIR---RFFEDYKKNENK 182
Score = 81 (33.6 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 166 PFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHH 225
P+HD+ + IFN VVEI + + K E++ L IK D + Y + V+PH
Sbjct: 39 PWHDLEIGPEAPI-IFNCVVEIGKGSKVKYELDKTTGL--IKVD----RILYSSVVYPH- 90
Query: 226 GYIWNYGALPQTW-ENPDETD 245
NYG +P+T E+ D D
Sbjct: 91 ----NYGFIPRTLCEDSDPID 107
>TAIR|locus:2062195 [details] [associations]
symbol:PPa2 "pyrophosphorylase 2" species:3702
"Arabidopsis thaliana" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA;NAS] [GO:0005737 "cytoplasm" evidence=ISM;IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISS]
[GO:0016020 "membrane" evidence=ISS] [GO:0016462 "pyrophosphatase
activity" evidence=ISS] InterPro:IPR008162 Pfam:PF00719
PROSITE:PS00387 GO:GO:0005737 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000287 GO:GO:0006796 EMBL:AC006439
KO:K01507 GO:GO:0004427 HOGENOM:HOG000236472 eggNOG:COG0221
Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324 EMBL:X57545
EMBL:AY048209 EMBL:AY091698 EMBL:AY088579 IPI:IPI00542975
PIR:H84561 PIR:S13379 RefSeq:NP_179415.1 UniGene:At.22749
ProteinModelPortal:P21216 SMR:P21216 STRING:P21216 PaxDb:P21216
PRIDE:P21216 EnsemblPlants:AT2G18230.1 GeneID:816338
KEGG:ath:AT2G18230 TAIR:At2g18230 InParanoid:P21216 OMA:FLKLMME
PhylomeDB:P21216 ProtClustDB:PLN02373 Genevestigator:P21216
GermOnline:AT2G18230 Uniprot:P21216
Length = 218
Score = 124 (48.7 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 27/88 (30%), Positives = 48/88 (54%)
Query: 253 DGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADI 312
D DP+DVL + + G ++ +A+G++ +ID+G+ D KIIA+ +DP D+ ++
Sbjct: 104 DSDPMDVLVLMQEPVLTGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYRDIKEL 163
Query: 313 ETHFPGYLKATNEWFKIYKIPDGKPENV 340
H L +F+ YK + K +V
Sbjct: 164 PPH---RLAEIRRFFEDYKKNENKKVDV 188
Score = 86 (35.3 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 28/81 (34%), Positives = 41/81 (50%)
Query: 166 PFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHH 225
P+HD+ + +FN VVEI + K E++ N L IK D + Y + V+PH
Sbjct: 41 PWHDLEIGPEAPT-VFNCVVEISKGGKVKYELDKNSGL--IKVD----RVLYSSIVYPH- 92
Query: 226 GYIWNYGALPQT-WENPDETD 245
NYG +P+T E+ D D
Sbjct: 93 ----NYGFIPRTICEDSDPMD 109
>TAIR|locus:2116997 [details] [associations]
symbol:PPa5 "pyrophosphorylase 5" species:3702
"Arabidopsis thaliana" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA;NAS] [GO:0005737 "cytoplasm" evidence=ISM;IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISS]
[GO:0016020 "membrane" evidence=ISS] [GO:0016462 "pyrophosphatase
activity" evidence=ISS] [GO:0005829 "cytosol" evidence=RCA]
[GO:0006816 "calcium ion transport" evidence=RCA] [GO:0007030
"Golgi organization" evidence=RCA] [GO:0009651 "response to salt
stress" evidence=RCA] HAMAP:MF_00209 InterPro:IPR008162
Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0000287 GO:GO:0006796 KO:K01507
GO:GO:0004427 EMBL:AF096370 EMBL:AL161492 HOGENOM:HOG000236472
eggNOG:COG0221 Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
ProtClustDB:PLN02373 EMBL:AY054516 EMBL:AY081667 IPI:IPI00522514
PIR:T01946 RefSeq:NP_192057.1 UniGene:At.24865 HSSP:O59570
ProteinModelPortal:O82597 SMR:O82597 IntAct:O82597 STRING:O82597
PaxDb:O82597 PRIDE:O82597 EnsemblPlants:AT4G01480.1 GeneID:827962
KEGG:ath:AT4G01480 TAIR:At4g01480 InParanoid:O82597 OMA:MFRMRDE
PhylomeDB:O82597 Genevestigator:O82597 Uniprot:O82597
Length = 216
Score = 124 (48.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 28/84 (33%), Positives = 48/84 (57%)
Query: 253 DGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADI 312
D DPIDVL I + G ++ +A+G++ +ID+G+ D KIIA+ V+DP + ++ ++
Sbjct: 102 DNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCVDDPEYKHITNINEL 161
Query: 313 ETHFPGYLKATNEWFKIYKIPDGK 336
H L +F+ YK + K
Sbjct: 162 PPH---RLSEIRRFFEDYKKNENK 182
Score = 82 (33.9 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 27/81 (33%), Positives = 42/81 (51%)
Query: 166 PFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHH 225
P+HD+ + IFN+V+EI + + K E++ L IK D + Y + V+PH
Sbjct: 39 PWHDLEIGPGAP-VIFNVVIEISKGSKVKYELDKKTGL--IKVD----RILYSSVVYPH- 90
Query: 226 GYIWNYGALPQTW-ENPDETD 245
NYG +P+T E+ D D
Sbjct: 91 ----NYGFVPRTLCEDNDPID 107
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 134 (52.2 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 26/67 (38%), Positives = 41/67 (61%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+++KN+ +EE F++ F +G I L K+ DGK KG GF+N+ + SAVKA+ + N
Sbjct: 235 IYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELN 294
Query: 95 KKPYKGK 101
K G+
Sbjct: 295 DKEINGQ 301
Score = 115 (45.5 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 24/58 (41%), Positives = 35/58 (60%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+EE F++ F +G I L K+ DGK KG GF+N+ + SAVKA+ + N K G +
Sbjct: 245 SEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQK 302
Score = 88 (36.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
I E+ +E F +G I A+++ + GK KG GF+ + A KAI + N + G
Sbjct: 347 IDSEKLEEEFKPFGTITSAKVMVDEAGKSKGFGFVCFTTPEEATKAITEMNTRMING 403
Score = 62 (26.9 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 17/68 (25%), Positives = 30/68 (44%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLK-GCGFINYANKISAVKAILKS 93
L++ L + E E F G + ++ ++A K G ++NY KAI +
Sbjct: 54 LYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEEL 113
Query: 94 NKKPYKGK 101
N P +G+
Sbjct: 114 NYNPIEGR 121
>POMBASE|SPBC660.15 [details] [associations]
symbol:SPBC660.15 "mRNA cleavage factor complex subunit
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=NAS] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005849 "mRNA cleavage factor
complex" evidence=ISO] [GO:0006378 "mRNA polyadenylation"
evidence=ISO] [GO:0006379 "mRNA cleavage" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC660.15 GO:GO:0005737 GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
eggNOG:COG0724 GO:GO:0006379 GO:GO:0005849 KO:K14411 HSSP:Q14103
OrthoDB:EOG4TF3VC PIR:T40627 RefSeq:NP_595094.1
ProteinModelPortal:O94432 SMR:O94432 STRING:O94432
EnsemblFungi:SPBC660.15.1 GeneID:2541150 KEGG:spo:SPBC660.15
OMA:CHKANDG NextBio:20802263 Uniprot:O94432
Length = 474
Score = 126 (49.4 bits), Expect = 7.1e-05, P = 7.1e-05
Identities = 27/72 (37%), Positives = 43/72 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILK 92
++F+ +P TEEEF+ F Q+G ++DA L+ + D G+ +G GF+ Y N+ SAV+A +
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE-SAVEATMS 306
Query: 93 SNKKPYKGKITE 104
GK E
Sbjct: 307 QPYITIHGKPVE 318
Score = 115 (45.5 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 100 GKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSNKKPY 156
G TEEEF+ F Q+G ++DA L+ + D G+ +G GF+ Y N+ SAV+A + +PY
Sbjct: 256 GDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENE-SAVEATMS---QPY 309
Score = 102 (41.0 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 19/73 (26%), Positives = 45/73 (61%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAIL 91
G++FI L ++ T++ +++F Q+G+++D +++++ G+ +G GF+ + N V ++
Sbjct: 163 GKMFIGGLNWETTDDSLRDYFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNP-KCVNEVM 221
Query: 92 KSNKKPYKGKITE 104
S + GKI +
Sbjct: 222 -SKEHHLDGKIID 233
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 169 (64.5 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 33/67 (49%), Positives = 47/67 (70%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKNL +ITE+EF + FGQ+G+I L+K+ + K +G GF+NYAN A KA+ + N
Sbjct: 263 VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDELN 322
Query: 95 KKPYKGK 101
K YKGK
Sbjct: 323 DKEYKGK 329
Score = 150 (57.9 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 33/80 (41%), Positives = 50/80 (62%)
Query: 82 NKISAVKAILKSNK-KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYAN 140
+K+ A+KA + K +ITE+EF + FGQ+G+I L+K+ + K +G GF+NYAN
Sbjct: 251 SKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYAN 310
Query: 141 KISAVKAILKSNKKPYKGSE 160
A KA+ + N K YKG +
Sbjct: 311 HECAQKAVDELNDKEYKGKK 330
Score = 124 (48.7 bits), Expect = 0.00019, P = 0.00019
Identities = 25/67 (37%), Positives = 38/67 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
LFIKNL ++ +E K F +G I A+++ + GK KG GF+ Y A KA+ + N
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQGKSKGFGFVCYTTPEEANKAVTEMN 425
Query: 95 KKPYKGK 101
++ GK
Sbjct: 426 QRMLAGK 432
>TAIR|locus:2168848 [details] [associations]
symbol:AT5G40490 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005829 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0030529 EMBL:AB009052 HOGENOM:HOG000234441
HSSP:Q61474 KO:K12741 eggNOG:NOG289504 EMBL:AY136466
IPI:IPI00518075 RefSeq:NP_198865.1 UniGene:At.30284
ProteinModelPortal:Q9FM47 SMR:Q9FM47 PaxDb:Q9FM47 PRIDE:Q9FM47
EnsemblPlants:AT5G40490.1 GeneID:834047 KEGG:ath:AT5G40490
TAIR:At5g40490 InParanoid:Q9FM47 OMA:YESEDMV PhylomeDB:Q9FM47
ProtClustDB:CLSN2916909 ArrayExpress:Q9FM47 Genevestigator:Q9FM47
Uniprot:Q9FM47
Length = 423
Score = 120 (47.3 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 23/63 (36%), Positives = 41/63 (65%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAIL 91
G++F+ L + T EF +HFG+YG+I D+ ++K+ G+ +G GF+ YA+ S V ++
Sbjct: 42 GKIFVGGLARETTSAEFLKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADS-SVVDKVI 100
Query: 92 KSN 94
+ N
Sbjct: 101 QDN 103
Score = 91 (37.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 16/60 (26%), Positives = 37/60 (61%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+ ++EFKE F Q+G++ + Q++++ + G+ +G GF+ Y ++ + K N+ G++
Sbjct: 141 VDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQ 200
>UNIPROTKB|E2RIB8 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005794 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074976 KO:K14573 CTD:55131 OMA:KSMNMKE
EMBL:AAEX03009272 EMBL:AAEX03009273 RefSeq:XP_532435.3
ProteinModelPortal:E2RIB8 Ensembl:ENSCAFT00000002617 GeneID:475203
KEGG:cfa:475203 NextBio:20851079 Uniprot:E2RIB8
Length = 751
Score = 154 (59.3 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 27/70 (38%), Positives = 44/70 (62%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 91
+ RL I+NL FK +E++ K FGQYG +++ + + DGK++G F+ + N + A KA+
Sbjct: 113 KARLIIRNLSFKCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALK 172
Query: 92 KSNKKPYKGK 101
N K KG+
Sbjct: 173 SMNMKEIKGR 182
Score = 120 (47.3 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
K +E++ K FGQYG +++ + + DGK++G F+ + N + A KA+ N K KG
Sbjct: 124 KCSEDDLKTVFGQYGAVLEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKSMNMKEIKG 181
Score = 60 (26.2 bits), Expect = 3.0e-09, Sum P(2) = 3.0e-09
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGK-LKGCGFINYANKISAVKAI 148
EEE E Q+GD+ +++ + D + KGC F + + +A K +
Sbjct: 340 EEELGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCL 385
Score = 57 (25.1 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
LF+ LP E+ +E F Q G + ++ K +G G++ ++ + V+ LK
Sbjct: 6 LFVSRLPPSARSEQLEELFSQVGPLKQCFVVTEKGSKACRGFGYVTFS-MLEDVQRALK 63
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 120 (47.3 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+++KNL +++EE + FG++G ++++ +GK KG GF+N+ N A +A+ N
Sbjct: 226 VYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALN 285
Query: 95 KKPYKGK 101
K + K
Sbjct: 286 GKTFDDK 292
Score = 102 (41.0 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 18/59 (30%), Positives = 34/59 (57%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+++EE + FG++G ++++ +GK KG GF+N+ N A +A+ N K + E
Sbjct: 235 LSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDALNGKTFDDKE 293
Score = 96 (38.9 bits), Expect = 2.3e-07, Sum P(2) = 2.3e-07
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + E F +G I+ ++ + G+ KG GF+ Y +A AI K
Sbjct: 133 GNIFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDK 192
Query: 93 SN 94
N
Sbjct: 193 LN 194
Score = 94 (38.1 bits), Expect = 4.0e-09, Sum P(2) = 4.0e-09
Identities = 15/53 (28%), Positives = 32/53 (60%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 154
+T+++ +EHF +G I +++++ G +G GF+ ++ A +AI + N K
Sbjct: 338 VTDDKLREHFAPFGTITSCKVMRDPSGVSRGSGFVAFSTPEEATRAITEMNGK 390
Score = 74 (31.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 16/68 (23%), Positives = 35/68 (51%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLK-GCGFINYANKISAVKAILKS 93
L++ +L +T+ + E F Q G ++ ++ ++ + G G++NYA A +A+ +
Sbjct: 47 LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALNEL 106
Query: 94 NKKPYKGK 101
N G+
Sbjct: 107 NFMALNGR 114
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 130 (50.8 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+++KNL T++E K FGQYG I A ++++ DGK + GF+N+ N A +A+ N
Sbjct: 227 VYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALN 286
Query: 95 KKPYKGK 101
K + K
Sbjct: 287 GKKFDDK 293
Score = 114 (45.2 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
T++E K FGQYG I A ++++ DGK + GF+N+ N A +A+ N K + E
Sbjct: 237 TDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAARAVEALNGKKFDDKE 294
Score = 93 (37.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 22/69 (31%), Positives = 34/69 (49%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G LF+KNL + + E F G I+ ++ + G+ +G GF+ + + SA AI K
Sbjct: 134 GNLFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEK 193
Query: 93 SNKKPYKGK 101
N K K
Sbjct: 194 LNGKVLNDK 202
Score = 83 (34.3 bits), Expect = 4.1e-09, Sum P(2) = 4.1e-09
Identities = 15/57 (26%), Positives = 32/57 (56%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+T+E+ +E F ++G I +++++ G KG GF+ ++ A + + + N K G
Sbjct: 339 VTDEKLRELFAEFGTITSCKVMRDPSGTSKGSGFVAFSAASEASRVLNEMNGKMVGG 395
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 125 (49.1 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+KN+ I +E+ KE F +YG +++++A GK KG GF+ Y +A KA+L +
Sbjct: 37 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 96
Query: 95 KKPYKGKI 102
K GK+
Sbjct: 97 GKSIDGKV 104
Score = 69 (29.3 bits), Expect = 4.4e-09, Sum P(2) = 4.4e-09
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
I +E+ KE F +G I A+++ G+ KG G + +++ A KA+ + N
Sbjct: 149 INDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMN 198
>SGD|S000005483 [details] [associations]
symbol:HRP1 "Subunit of cleavage factor I" species:4932
"Saccharomyces cerevisiae" [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0006378 "mRNA polyadenylation" evidence=IMP;IDA]
[GO:0005849 "mRNA cleavage factor complex" evidence=IPI]
[GO:0006379 "mRNA cleavage" evidence=IDA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SGD:S000005483
EMBL:BK006948 GO:GO:0000184 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0010494 eggNOG:COG0724
GO:GO:0006379 GO:GO:0005849 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:U35737 EMBL:U38535 EMBL:X95258 EMBL:Z74865 PIR:S66820
RefSeq:NP_014518.1 PDB:2CJK PDB:2KM8 PDBsum:2CJK PDBsum:2KM8
ProteinModelPortal:Q99383 SMR:Q99383 DIP:DIP-1371N IntAct:Q99383
MINT:MINT-395353 STRING:Q99383 PaxDb:Q99383 PeptideAtlas:Q99383
EnsemblFungi:YOL123W GeneID:853997 KEGG:sce:YOL123W CYGD:YOL123w
HOGENOM:HOG000248803 OMA:AREEQDK OrthoDB:EOG4TF3VC
EvolutionaryTrace:Q99383 NextBio:975491 Genevestigator:Q99383
GermOnline:YOL123W Uniprot:Q99383
Length = 534
Score = 112 (44.5 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 23/72 (31%), Positives = 47/72 (65%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 92
++FI L + TE+ +E+FG+YG + D +++K+ A G+ +G GF+++ K S+V ++K
Sbjct: 160 KMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSF-EKPSSVDEVVK 218
Query: 93 SNKKPYKGKITE 104
+ + GK+ +
Sbjct: 219 T-QHILDGKVID 229
Score = 95 (38.5 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSNK 153
+ +EF+E F Q+G IIDAQL+ + D G+ +G GF+ Y + AV + + NK
Sbjct: 254 VRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY-DSADAVDRVCQ-NK 304
Score = 42 (19.8 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 194 KMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENP 241
K+EI EP + ++ G N+ G N G Q ++NP
Sbjct: 312 KIEIKRAEPRHMQQKSSNNGGNNGGNNMNRRGGNFGNQGDFNQMYQNP 359
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 116 (45.9 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 27/76 (35%), Positives = 39/76 (51%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSENGL 163
EE+ +E F +G + D +L+ + + KGCGFI + N+ SA+ AI N GS N L
Sbjct: 104 EEQIRELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATLNGMKLDGSPNPL 163
Query: 164 ISPFHDIPLYSNVKDK 179
+ F D K K
Sbjct: 164 VVKFADTEKDKKKKQK 179
Score = 111 (44.1 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 23/61 (37%), Positives = 36/61 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
+LF+ LP EE+ +E F +G + D +L+ + + KGCGFI + N+ SA+ AI
Sbjct: 92 KLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSESKGCGFIKFDNRESALSAIATL 151
Query: 94 N 94
N
Sbjct: 152 N 152
Score = 92 (37.4 bits), Expect = 7.5e-09, Sum P(2) = 7.5e-09
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 92
+LF+ +P EEE K F +I L+KN + +GC F++ ++ A +AI +
Sbjct: 4 KLFVGQIPKSFNEEEIKNLFTNIANIESVSLIKNKTTNEPQGCAFVSVPSREEADRAIEQ 63
Query: 93 -SNKKPYKGKITEEEFK 108
N K ++G + + K
Sbjct: 64 LHNSKKFQGVLNNLQVK 80
Score = 68 (29.0 bits), Expect = 7.8e-06, Sum P(2) = 7.8e-06
Identities = 18/40 (45%), Positives = 24/40 (60%)
Query: 111 FGQYGDIIDAQLL--KNADGKLKGCGFINYANKISAVKAI 148
F QYG ++ A++ KN G KG GF++Y N SA AI
Sbjct: 423 FQQYGIVVSAKVYVDKNT-GVSKGFGFVSYDNPASANLAI 461
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 119 (46.9 bits), Expect = 0.00060, P = 0.00060
Identities = 22/67 (32%), Positives = 40/67 (59%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+++KN+ +TEEE ++HF Q G I +L+ + GK KG GF+ ++ A+ A+ +
Sbjct: 306 IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTFH 365
Query: 95 KKPYKGK 101
+ + GK
Sbjct: 366 GQMFHGK 372
Score = 107 (42.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 25/79 (31%), Positives = 45/79 (56%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-- 90
G +F+KNLP +T ++ F ++G+I+ ++ DGK +G GF+ + + +A AI
Sbjct: 112 GNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQT 171
Query: 91 LKS----NKKPYKGKITEE 105
L S +K+ Y GK ++
Sbjct: 172 LNSTIVADKEIYVGKFMKK 190
Score = 102 (41.0 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 26/78 (33%), Positives = 39/78 (50%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSEN 161
+TEEE ++HF Q G I +L+ + GK KG GF+ ++ A+ A+ K + G
Sbjct: 315 VTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAV-----KTFHGQM- 368
Query: 162 GLISPFHDIPLYSNVKDK 179
FH PLY + K
Sbjct: 369 -----FHGKPLYVAIAQK 381
Score = 88 (36.0 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 18/67 (26%), Positives = 35/67 (52%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
L++KNL ++E+ +E F ++G I+ + K+ + +G F+N+ N A +A N
Sbjct: 203 LYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARRAAETVN 262
Query: 95 KKPYKGK 101
+ K
Sbjct: 263 GTKFGSK 269
Score = 68 (29.0 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKS 93
L++ +L +TE + F ++ + +L K+A C G+ N+ ++ A AI K
Sbjct: 26 LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKK 85
Query: 94 NKKPYKGKI 102
N GK+
Sbjct: 86 NNSLLNGKM 94
>CGD|CAL0003460 [details] [associations]
symbol:orf19.5989 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005849 "mRNA
cleavage factor complex" evidence=IEA] [GO:0006379 "mRNA cleavage"
evidence=IEA] [GO:0006378 "mRNA polyadenylation" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0003460 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000003 EMBL:AACQ01000004 eggNOG:COG0724 KO:K14411
RefSeq:XP_723052.1 RefSeq:XP_723199.1 ProteinModelPortal:Q5ANB5
SMR:Q5ANB5 STRING:Q5ANB5 GeneID:3635162 GeneID:3635323
KEGG:cal:CaO19.13410 KEGG:cal:CaO19.5989 Uniprot:Q5ANB5
Length = 475
Score = 125 (49.1 bits), Expect = 9.2e-05, P = 9.2e-05
Identities = 30/90 (33%), Positives = 48/90 (53%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAIL 91
G++F+ + +TEEEF F Q+G IID QL+ + D G+ +G GF+ Y + +AV +
Sbjct: 246 GKIFVGGIDPMVTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSP-AAVDKVC 304
Query: 92 KSNKKPYKGKITEEEFKEHFGQYGDIIDAQ 121
+ KGK E + GQ+ + Q
Sbjct: 305 VNKYLTLKGKAMEVKRAAPRGQHNQQVMMQ 334
Score = 105 (42.0 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 25/72 (34%), Positives = 43/72 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 92
+ FI L + TEE HF +YG+I+D ++K+ A G+ +G GF+ + + S V A+LK
Sbjct: 163 KCFIGGLSWDTTEEALVSHFQKYGNIVDYTIMKDSATGRSRGFGFLTFEDAKS-VDALLK 221
Query: 93 SNKKPYKGKITE 104
++ GK+ +
Sbjct: 222 -DRHVLDGKLID 232
Score = 101 (40.6 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 23/58 (39%), Positives = 34/58 (58%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+TEEEF F Q+G IID QL+ + D G+ +G GF+ Y + +AV + + KG
Sbjct: 257 VTEEEFDNFFSQFGKIIDCQLMIDKDTGRSRGFGFVTYDSP-AAVDKVCVNKYLTLKG 313
>UNIPROTKB|Q949J1 [details] [associations]
symbol:ppa2 "Soluble inorganic pyrophosphatase 2"
species:3055 "Chlamydomonas reinhardtii" [GO:0004427 "inorganic
diphosphatase activity" evidence=IDA] [GO:0005739 "mitochondrion"
evidence=IDA] InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387
GO:GO:0005739 GO:GO:0005634 GO:GO:0046686 GO:GO:0000287
GO:GO:0006796 KO:K01507 BRENDA:3.6.1.1 GO:GO:0004427 eggNOG:COG0221
Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
ProtClustDB:PLN02373 EMBL:AJ298232 RefSeq:XP_001694912.1
UniGene:Cre.13286 HSSP:Q8U438 ProteinModelPortal:Q949J1
STRING:Q949J1 GeneID:5720576 KEGG:cre:CHLREDRAFT_174103 OMA:KGEDEKI
Uniprot:Q949J1
Length = 192
Score = 115 (45.5 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 28/99 (28%), Positives = 55/99 (55%)
Query: 253 DGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADI 312
DGDP+DVL + + ++ K +GV+ ++D+G+ D K+IA++ +DP D++ +
Sbjct: 74 DGDPLDVLVLMQEPVVPMCFLRAKPIGVMQMLDQGERDDKLIAVHADDPEYKGFTDISQL 133
Query: 313 ETHFPGYLKATNEWFKIYKIPDGKPENVLNTRVEGESSQ 351
H +K +F+ YK + K E V++ + E ++
Sbjct: 134 PPHRLAEIK---RFFEDYKKNEHK-EVVVDDFLGAEEAK 168
Score = 71 (30.1 bits), Expect = 1.9e-08, Sum P(2) = 1.9e-08
Identities = 27/92 (29%), Positives = 46/92 (50%)
Query: 156 YKGSENGLISPFHDI-PLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGN 214
Y+G+ + P+HD+ P N + V+EIPR + K E++ + L + +
Sbjct: 4 YRGTAS---HPWHDLHP--GNDAPNFVSCVIEIPRGSKVKYELDKDTGLCFVDR------ 52
Query: 215 LRYVANVFPHHGYIWNYGALPQTW-ENPDETD 245
+ Y + V+PH NYG +P+T E+ D D
Sbjct: 53 ILYSSVVYPH-----NYGFVPKTLCEDGDPLD 79
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 122 (48.0 bits), Expect = 0.00031, P = 0.00031
Identities = 21/62 (33%), Positives = 40/62 (64%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
L++KNL + +E+ KE F +YG++ ++++ N G +G GF+ Y+N A++A+ + N
Sbjct: 334 LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMN 393
Query: 95 KK 96
K
Sbjct: 394 GK 395
Score = 106 (42.4 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 20/60 (33%), Positives = 38/60 (63%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+++KNLP +I E+E ++ FG++G I A ++++ G + GF+N+ +A A+ K N
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Score = 103 (41.3 bits), Expect = 4.2e-08, Sum P(2) = 4.2e-08
Identities = 22/63 (34%), Positives = 34/63 (53%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 91
+G +FIKNL I + E F +G I+ ++ + G+ KG GF+ + + SA AI
Sbjct: 135 KGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAID 194
Query: 92 KSN 94
K N
Sbjct: 195 KLN 197
Score = 102 (41.0 bits), Expect = 2.0e-08, Sum P(2) = 2.0e-08
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 154
+ +E+ KE F +YG++ ++++ N G +G GF+ Y+N A++A+ + N K
Sbjct: 343 VDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEALRALSEMNGK 395
Score = 80 (33.2 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
+I E+E ++ FG++G I A ++++ G + GF+N+ +A A+ K N
Sbjct: 239 EIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEKMN 290
Score = 64 (27.6 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 14/63 (22%), Positives = 32/63 (50%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
L+ +L K+TE + F +++ ++ ++ + + G +IN++N A +A+ N
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPNDAYRAMEALN 110
Query: 95 KKP 97
P
Sbjct: 111 YTP 113
>UNIPROTKB|F1M2S4 [details] [associations]
symbol:F1M2S4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00951465
ProteinModelPortal:F1M2S4 Ensembl:ENSRNOT00000050715 Uniprot:F1M2S4
Length = 208
Score = 116 (45.9 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 26/74 (35%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L FK T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 8 KLFIGGLSFKTTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 65
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 66 -NARPHKVDGRVVE 78
Score = 72 (30.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 95 KKPYKGKITEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 150
KK + G+ TEE +++F QYG I +++ + GK +G F+ + + S K +++
Sbjct: 98 KKIFVGEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 155
>TAIR|locus:2122990 [details] [associations]
symbol:AT4G19610 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002687 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K14787
OMA:VFREKNV IPI:IPI00517416 RefSeq:NP_193696.3 UniGene:At.50354
ProteinModelPortal:F4JT92 SMR:F4JT92 PRIDE:F4JT92
EnsemblPlants:AT4G19610.1 GeneID:827703 KEGG:ath:AT4G19610
Uniprot:F4JT92
Length = 816
Score = 127 (49.8 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
R+ +KNLP + E++ ++HF Q G+I DA+L+++ DGK + GFI + + A +AI
Sbjct: 3 RICVKNLPKHVKEDQLRDHFSQKGEITDAKLMRSNDGKSRQFGFIGFRSAQEAQQAIKYF 62
Query: 94 NKKPYKG 100
N Y G
Sbjct: 63 NNT-YLG 68
Score = 120 (47.3 bits), Expect = 0.00068, P = 0.00068
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAIL 91
GRLF++NLP+ TEEE EHF +G I + L+ + + K +G +I Y A +A+
Sbjct: 294 GRLFVRNLPYTATEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAME 353
Query: 92 KSNKKPYKGKI 102
+ + ++G++
Sbjct: 354 ELDNSSFQGRL 364
Score = 81 (33.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 28/102 (27%), Positives = 46/102 (45%)
Query: 97 PYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSNKKP 155
PY TEEE EHF +G I + L+ + + K +G +I Y A +A+ + +
Sbjct: 302 PYTA--TEEELMEHFSTFGKISEVHLVLDKETKRSRGIAYILYLIPECAARAMEELDNSS 359
Query: 156 YKGSENGLISPFHDIPL-YSNVKDKIFNMVVEIPRWTNAKME 196
++G L+ H +P + DK N +P+ K E
Sbjct: 360 FQGR---LL---HILPAKHRETSDKQVNDTSNLPKTFKQKRE 395
>DICTYBASE|DDB_G0285403 [details] [associations]
symbol:DDB_G0285403 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0285403 GO:GO:0000166
EMBL:AAFI02000079 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
KO:K14407 RefSeq:XP_638262.1 ProteinModelPortal:Q54NB8
EnsemblProtists:DDB0233345 GeneID:8625070 KEGG:ddi:DDB_G0285403
InParanoid:Q54NB8 OMA:YIGSINW Uniprot:Q54NB8
Length = 1035
Score = 111 (44.1 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 23/59 (38%), Positives = 36/59 (61%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+ R+++ +L F +TE+ + F +G+I L K+A GK KG FI Y N+ SA KA+
Sbjct: 587 QSRIYVGSLHFSLTEDVIRATFSVFGNIKSLALGKDASGKSKGYAFIEYDNQESAAKAL 645
Score = 100 (40.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSN 152
+TE++ + F Q+G +I L++NAD GK KG GF+++ K SA AI N
Sbjct: 780 VTEDQVRSIFSQFGRVISCFLMQNADTGKHKGFGFVDFELKKSADDAIATMN 831
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 105 (42.0 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F KNL + ++ KE QYG+I + ++ + GK KG GF N+ + +A + N
Sbjct: 190 VFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENEN 249
Query: 95 KKPYKGK 101
K + GK
Sbjct: 250 GKIFHGK 256
Score = 104 (41.7 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 26/77 (33%), Positives = 40/77 (51%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + KG GF++Y + SA KAI K
Sbjct: 98 GNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAK 157
Query: 93 SNKKPYKG-KITEEEFK 108
N G K+ FK
Sbjct: 158 VNGMMINGQKVFVGPFK 174
Score = 99 (39.9 bits), Expect = 4.5e-08, Sum P(2) = 4.5e-08
Identities = 33/118 (27%), Positives = 53/118 (44%)
Query: 105 EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSENGLI 164
++ KE QYG+I + ++ + GK KG GF N+ + A K ++++ ENG I
Sbjct: 202 DQLKELLQQYGEITNITIMADDKGKSKGFGFANFESA-EAAKNVVEN--------ENGKI 252
Query: 165 SPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVF 222
FH P+Y+ K E+ K + +N + I I LR V + F
Sbjct: 253 --FHGKPIYAGRAQKKIEREAELKHTFETKYQ-GVNLYIKNIDDSIDNDKLREVFSQF 307
Score = 69 (29.3 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 16/68 (23%), Positives = 36/68 (52%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLK-GCGFINYANKISAVKAILKS 93
L++ +L +++E+ E F Q G + + ++ ++ + + ++NY N A +A+
Sbjct: 12 LYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTL 71
Query: 94 NKKPYKGK 101
N P +GK
Sbjct: 72 NNTPIRGK 79
Score = 68 (29.0 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSN 152
I ++ +E F Q+G I A ++K+ KG GF+ Y A +A+ + N
Sbjct: 295 IDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMN 346
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 125 (49.1 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 25/68 (36%), Positives = 41/68 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+KN+ I +E+ KE F +YG +++++A GK KG GF+ Y +A KA+L +
Sbjct: 201 VFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 95 KKPYKGKI 102
K GK+
Sbjct: 261 GKSIDGKV 268
Score = 100 (40.3 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
I +E+ KE F +YG +++++A GK KG GF+ Y +A KA+L + K G
Sbjct: 210 IDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDG 266
Score = 70 (29.7 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I F +G+I+ +++ + +G KG ++++ + +A +AI
Sbjct: 106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAANRAIWH 164
Query: 93 SN 94
N
Sbjct: 165 MN 166
Score = 69 (29.3 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
I +E+ KE F +G I A+++ G+ KG G + +++ A KA+ + N
Sbjct: 313 INDEKLKEEFSSFGSISRAKVMMEV-GQGKGFGVVCFSSFEEATKAVDEMN 362
>UNIPROTKB|E1BLD4 [details] [associations]
symbol:RBM28 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00550000074976
EMBL:DAAA02011496 IPI:IPI00697406 ProteinModelPortal:E1BLD4
Ensembl:ENSBTAT00000022610 OMA:KSMNMKE Uniprot:E1BLD4
Length = 756
Score = 144 (55.7 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 26/70 (37%), Positives = 43/70 (61%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 91
+ RL I+NL FK +E++ K F Q+G I++ + + DGK++G F+ + N + A KA+
Sbjct: 113 KARLIIRNLSFKCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALK 172
Query: 92 KSNKKPYKGK 101
N K KG+
Sbjct: 173 GMNMKEIKGR 182
Score = 110 (43.8 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
K +E++ K F Q+G I++ + + DGK++G F+ + N + A KA+ N K KG
Sbjct: 124 KCSEDDLKTVFSQFGTILEVNIPRKPDGKMRGFAFVQFKNLLEAGKALKGMNMKEIKG 181
Score = 57 (25.1 bits), Expect = 7.9e-08, Sum P(2) = 7.9e-08
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGK-LKGCGFINYANKISAVKAI 148
EE+ E Q+GD+ +++ + D + KGC F + + +A K +
Sbjct: 345 EEDLGELLQQFGDLKYVRIVLHPDTEHSKGCAFAQFMTQEAAQKCL 390
Score = 57 (25.1 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
LF+ LP E+ +E F Q G + ++ K +G G++ ++ + V+ LK
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFS-MVEDVQRALK 63
Score = 37 (18.1 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 13/37 (35%), Positives = 17/37 (45%)
Query: 123 LKNADGKLKG--CG--FINYANKISAVKAILKSNKKP 155
LK A GK+KG G F + A+ A+ N P
Sbjct: 525 LKGAYGKIKGQSLGYAFAEFQEHEHALAALRHINNNP 561
>TIGR_CMR|ECH_1014 [details] [associations]
symbol:ECH_1014 "inorganic pyrophosphatase" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0004427 "inorganic
diphosphatase activity" evidence=ISS] [GO:0006793 "phosphorus
metabolic process" evidence=ISS] HAMAP:MF_00209 InterPro:IPR008162
Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737 GO:GO:0000287
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0006796 KO:K01507
GO:GO:0004427 eggNOG:COG0221 Gene3D:3.90.80.10 PANTHER:PTHR10286
SUPFAM:SSF50324 HOGENOM:HOG000236473 OMA:GVANYKK RefSeq:YP_507800.1
PDB:3LO0 PDBsum:3LO0 ProteinModelPortal:Q2GFI3 SMR:Q2GFI3
STRING:Q2GFI3 GeneID:3927982 KEGG:ech:ECH_1014 PATRIC:20577402
ProtClustDB:CLSK749389 BioCyc:ECHA205920:GJNR-1017-MONOMER
EvolutionaryTrace:Q2GFI3 Uniprot:Q2GFI3
Length = 172
Score = 130 (50.8 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 44/148 (29%), Positives = 70/148 (47%)
Query: 187 IPRWTNAKMEINLNEPLNPIKQDI-KKGNLRYVANVFPHHGYI-WNYGALPQTWENPDET 244
+P+ N +EI+ N P+K + K+ NL V P Y NYG +P T
Sbjct: 12 VPKEINVIIEISQNSC--PVKYEFDKEKNLFCVDRFLPTSMYYPCNYGFIPHTCA----- 64
Query: 245 DAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAA 304
GDGDP+DVL G +I+ + +GV+ + DE D KI+A+ + +
Sbjct: 65 -------GDGDPVDVLVASRFPVMSGAVIRARPVGVLVMHDESGEDVKILAVPTHKVDQY 117
Query: 305 KLNDVADIETHFP-GYLKATNEWFKIYK 331
N++ D + FP +L + + +F YK
Sbjct: 118 -YNNIKDY-SDFPVSFLNSISHFFTFYK 143
>UNIPROTKB|F1M5N1 [details] [associations]
symbol:F1M5N1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00567689
ProteinModelPortal:F1M5N1 Ensembl:ENSRNOT00000023344 Uniprot:F1M5N1
Length = 207
Score = 112 (44.5 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 11 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 68
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 69 -NARPHKVDGRVVE 81
Score = 71 (30.1 bits), Expect = 8.9e-08, Sum P(2) = 8.9e-08
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 94 NKKPYKGKI---TEEE-FKEHFGQYG--DIIDAQLLKNADGKLKGCGFINYANKISAVKA 147
N K + G I TEE +++FGQYG ++I+ + GK +G F+ + ++ S K
Sbjct: 99 NMKIFVGAIKEDTEEHHLRDYFGQYGKTEVIEI-VTDRGSGKKRGFAFVTFDDRDSVDKI 157
Query: 148 ILK 150
+++
Sbjct: 158 VIQ 160
>TAIR|locus:2160437 [details] [associations]
symbol:AT5G41690 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 EMBL:AK221749
IPI:IPI00517520 RefSeq:NP_568594.3 UniGene:At.55306
ProteinModelPortal:Q56XC6 SMR:Q56XC6 EnsemblPlants:AT5G41690.1
GeneID:834172 KEGG:ath:AT5G41690 TAIR:At5g41690
HOGENOM:HOG000131709 InParanoid:Q56XC6 OMA:WHERESL PhylomeDB:Q56XC6
ProtClustDB:CLSN2679886 Genevestigator:Q56XC6 Uniprot:Q56XC6
Length = 567
Score = 118 (46.6 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 22/60 (36%), Positives = 36/60 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
LF+ NLP++ + F + G+++ QL+ N GKL GCGF+ +A+ A +A+ K N
Sbjct: 70 LFVANLPYETKIPNIIDFFKKVGEVVRVQLIVNLKGKLVGCGFVEFASVNEAEEALQKKN 129
Score = 81 (33.6 bits), Expect = 9.3e-08, Sum P(2) = 9.3e-08
Identities = 25/99 (25%), Positives = 51/99 (51%)
Query: 88 KAILKSNKKPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 147
K + +N P + KI+ + F +++ +L+ N G+ GCGF+ +A+ A KA
Sbjct: 436 KTLFVANLSP-RTKISH--IIKFFKDVAEVVRVRLIVNHRGEHVGCGFVEFASVNEAQKA 492
Query: 148 ILKSNKKPYKGSENGL----ISPFHDIPLYSNVKDKIFN 182
+ K N + + E L ++P+ P Y++ +K+++
Sbjct: 493 LQKMNGENLRSREIFLDVVELAPYPLRPKYNHA-EKLWH 530
Score = 71 (30.1 bits), Expect = 9.8e-07, Sum P(2) = 9.8e-07
Identities = 18/68 (26%), Positives = 35/68 (51%)
Query: 85 SAVKAILKSNKKPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISA 144
S + + +N P + KI++ + F G+++ +L+ N +GK G GF+ +A+
Sbjct: 182 SVEEVLFVANLSP-QTKISD--IFDFFNCVGEVVSIRLMVNHEGKHVGYGFVEFASADET 238
Query: 145 VKAILKSN 152
KA+ N
Sbjct: 239 KKALENKN 246
Score = 63 (27.2 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 12/42 (28%), Positives = 21/42 (50%)
Query: 111 FGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
F G+++ +L+ N GK GC F+ + + A A+ N
Sbjct: 328 FKDVGEVVHVRLILNHTGKHVGCAFVEFGSANEAKMALETKN 369
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 116 (45.9 bits), Expect = 0.00071, P = 0.00071
Identities = 26/79 (32%), Positives = 47/79 (59%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+++KNL T+ + K FG++G+I A ++K+ +GK + GF+N+ +AV AI K N
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 95 KKPYKGKITEEEFKEHFGQ 113
G + +E+ + H G+
Sbjct: 181 -----GVVVDEK-ELHVGR 193
Score = 100 (40.3 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 19/50 (38%), Positives = 32/50 (64%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
T+ + K FG++G+I A ++K+ +GK + GF+N+ +AV AI K N
Sbjct: 131 TDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Score = 96 (38.9 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 17/58 (29%), Positives = 33/58 (56%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
RG +F+KNL I ++ + F +G ++ ++ ++A G KG GF+ + + +S A
Sbjct: 30 RGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTA 87
Score = 85 (35.0 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 154
+ + +E F ++G I +++ +++G KG GF+ ++ A KA+LK N K
Sbjct: 234 VDNTKLEELFSEFGTITSCKVMVHSNGISKGVGFVEFSTSEEASKAMLKMNGK 286
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 111 (44.1 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 23/64 (35%), Positives = 40/64 (62%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + EHF +G I+ ++++ + +G KG GF++Y ++ +A +AI +
Sbjct: 98 GNVFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGS-KGYGFVHYQDQRAADRAIEE 156
Query: 93 SNKK 96
N K
Sbjct: 157 MNGK 160
Score = 82 (33.9 bits), Expect = 1.2e-07, Sum P(2) = 1.2e-07
Identities = 16/63 (25%), Positives = 33/63 (52%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E + F +YG + +++K+A GK K GF+++ + +A A+ N +
Sbjct: 195 KNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVEDMNGRD 254
Query: 156 YKG 158
G
Sbjct: 255 ING 257
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 153 (58.9 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 34/106 (32%), Positives = 57/106 (53%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 91
+ RL I+NL FK +E++ K F YG +++ + K DGK++G F+ + N + A KA+
Sbjct: 113 KARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALK 172
Query: 92 KSNKKPYKGKITEEEFKEHFGQYGDIIDAQ---LLKNADGKLKGCG 134
+N K KG+ ++ +Y D A + K++D K K G
Sbjct: 173 GANMKEIKGRTVAVDWAVAKDKYKDAQHASAPGVKKSSDRKPKESG 218
Score = 111 (44.1 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
K +E++ K F YG +++ + K DGK++G F+ + N + A KA+ +N K KG
Sbjct: 124 KCSEDDLKAVFTHYGTVLEVNIPKKPDGKMRGFAFVQFKNLLEAGKALKGANMKEIKG 181
Score = 53 (23.7 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
LF+ LP ++ +E F Q G + ++ K +G G++ ++ + V+ LK
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFS-MLEDVQRALK 63
>TAIR|locus:2077392 [details] [associations]
symbol:AT3G07810 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005576 "extracellular region" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 IPI:IPI00546643 RefSeq:NP_850539.1 UniGene:At.19375
ProteinModelPortal:F4JFN7 SMR:F4JFN7 PRIDE:F4JFN7
EnsemblPlants:AT3G07810.2 GeneID:819972 KEGG:ath:AT3G07810
OMA:YYIGNTN Uniprot:F4JFN7
Length = 495
Score = 117 (46.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 25/73 (34%), Positives = 44/73 (60%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 91
G+LFI + + EE KE+F +G++I+A +LK+ G+ +G GF+ +A+ AV I+
Sbjct: 6 GKLFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADP--AVAEIV 63
Query: 92 KSNKKPYKGKITE 104
+ K G++ E
Sbjct: 64 ITEKHNIDGRLVE 76
Score = 77 (32.2 bits), Expect = 2.1e-07, Sum P(2) = 2.1e-07
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKS 151
+TE +FK +F Q+G D ++ + + + +G GFI Y ++ + K +LK+
Sbjct: 119 VTESDFKTYFEQFGTTTDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKT 169
>UNIPROTKB|F1NIP6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AADN02045251 EMBL:AADN02045250
IPI:IPI00596605 Ensembl:ENSGALT00000007847 ArrayExpress:F1NIP6
Uniprot:F1NIP6
Length = 541
Score = 118 (46.6 bits), Expect = 0.00066, P = 0.00066
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
++F++NLPF +T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA
Sbjct: 465 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKA 519
Score = 111 (44.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R+FI N+P+ + + K+ + G++ +L K+A+GK +GCG + + ++ KA+
Sbjct: 49 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAL 108
Query: 91 LKSNKKPYKGK---ITEEEFKEH 110
NK G+ I E+ EH
Sbjct: 109 ETMNKYDLSGRPLNIKEDPEGEH 131
Score = 98 (39.6 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL FK+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 185 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 244
Score = 84 (34.6 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA N G E
Sbjct: 475 LTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGRE 532
Score = 73 (30.8 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 193 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 244
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 119 (46.9 bits), Expect = 0.00057, P = 0.00057
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN ++ +E +E F Q+G + +++++ GK KG GF++Y A KA+ + N
Sbjct: 122 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 181
Query: 95 KKPYKGK 101
K GK
Sbjct: 182 GKEMSGK 188
Score = 107 (42.7 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 37/162 (22%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + ++ +E +E F Q+G + +++++ GK KG GF++Y A KA+ + N K
Sbjct: 125 KNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKE 184
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + +K K + E I R+ + I NL++ ++ ++++
Sbjct: 185 MSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFS 244
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 245 PFGSITSAKVMLEDGRSKGFGFV--CFSSPEEATKAVTEMNG 284
Score = 89 (36.4 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG F+++ + +A KAI K
Sbjct: 28 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAANKAIEK 86
Query: 93 SN 94
N
Sbjct: 87 MN 88
>TAIR|locus:4515103541 [details] [associations]
symbol:AT5G08695 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
OMA:YLEWAPR IPI:IPI00539175 RefSeq:NP_001119193.1 UniGene:At.68994
ProteinModelPortal:F4KCG5 SMR:F4KCG5 EnsemblPlants:AT5G08695.1
GeneID:6241377 KEGG:ath:AT5G08695 Uniprot:F4KCG5
Length = 690
Score = 137 (53.3 bits), Expect = 7.6e-06, P = 7.6e-06
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGK-LKGCGFINYANKISAVKAIL 91
GRLF+ LP+ TEEE EHF ++GDI + L+ + D + +G F+ Y SA A+
Sbjct: 227 GRLFVHGLPYSTTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMD 286
Query: 92 KSNKKPYKGK 101
K +K P++G+
Sbjct: 287 KLDKLPFQGR 296
Score = 101 (40.6 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 97 PYKGKITEEEFKEHFGQYGDIIDAQLLKNADGK-LKGCGFINYANKISAVKAILKSNKKP 155
PY TEEE EHF ++GDI + L+ + D + +G F+ Y SA A+ K +K P
Sbjct: 235 PYS--TTEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKLDKLP 292
Query: 156 YKG 158
++G
Sbjct: 293 FQG 295
Score = 97 (39.2 bits), Expect = 2.5e-07, Sum P(2) = 2.5e-07
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
R+ +KN+P +TE++ + F + G+I D +L + +DG+ + +I + ++ A AI
Sbjct: 5 RIIVKNVPKYVTEDQLRGIFSEKGEITDVKLKRLSDGRSRQFAYIGFRSEQKAQDAITYF 64
Query: 94 NK 95
NK
Sbjct: 65 NK 66
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 123 (48.4 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+KN I +E+ K+ F +YG +++++A GK KG GF+ Y +A KA+L+ +
Sbjct: 201 VFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELH 260
Query: 95 KKPYKGKI 102
K GK+
Sbjct: 261 GKSIDGKV 268
Score = 102 (41.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 21/63 (33%), Positives = 36/63 (57%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + I +E+ K+ F +YG +++++A GK KG GF+ Y +A KA+L+ + K
Sbjct: 204 KNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQKAVLELHGKS 263
Query: 156 YKG 158
G
Sbjct: 264 IDG 266
Score = 70 (29.7 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I F +G+I+ +++ + +G KG ++++ + +A +AI
Sbjct: 106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAANRAIWH 164
Query: 93 SN 94
N
Sbjct: 165 MN 166
Score = 66 (28.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
I +E+ KE F +G I A+++ G+ KG G + +++ A KA+ + N
Sbjct: 313 INDEKLKEEFSLFGSISRAKVMMEV-GQGKGFGVVCFSSFEEASKAVNEMN 362
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 126 (49.4 bits), Expect = 0.00010, P = 0.00010
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN ++ +E KE F Q+G + +++++ +GK KG GF++Y A KA+ + N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 95 KKPYKGKI 102
K GKI
Sbjct: 253 GKEISGKI 260
Score = 107 (42.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 38/162 (23%), Positives = 74/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + ++ +E KE F Q+G + +++++ +GK KG GF++Y A KA+ + N K
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + +K K + E I R+ + I NL++ ++ ++++
Sbjct: 256 ISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 89 (36.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG F+++ + +A KAI K
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>UNIPROTKB|D4A491 [details] [associations]
symbol:D4A491 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
IPI:IPI00560785 ProteinModelPortal:D4A491
Ensembl:ENSRNOT00000046349 OMA:DNAMEAR Uniprot:D4A491
Length = 239
Score = 112 (44.5 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 65
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 66 -NARPHKVNGRVVE 78
Score = 70 (29.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYG--DIIDAQLLKNADGKLKGCGFINYANKISAVKAI 148
KK + G I TEE +++FGQYG ++I+ + GK +G F+ + ++ S K +
Sbjct: 98 KKIFVGGIKEDTEEHHLRDYFGQYGKTEVIEI-VTDRGSGKKRGFAFVTFDDRDSVDKIV 156
Query: 149 LK 150
++
Sbjct: 157 IQ 158
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 101 (40.6 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LFI +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 111
Score = 92 (37.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
+E++ + F +G+I + +L+ DG KGC F+ Y++ A AI + G+ +
Sbjct: 153 SEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASS 212
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 213 SLVVKFAD 220
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 104 (41.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAI 90
+LFI ++P TE++ + F ++GD+++ L+K+ G+ +GC F+ YA A +AI
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAI 180
Score = 94 (38.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK-SNKKPYKGSEN 161
T +E +E F YG + D ++K+ + +GCGF+ ++++ A+ A+ S +G E
Sbjct: 225 TAKEIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQ 284
Query: 162 GLISPFHD 169
LI F D
Sbjct: 285 PLIIRFAD 292
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 104 (41.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 20/58 (34%), Positives = 37/58 (63%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAI 90
+LFI ++P TE++ + F ++GD+++ L+K+ G+ +GC F+ YA A +AI
Sbjct: 123 KLFIGSVPRTATEDDVRPLFEEHGDVVEVALIKDRKTGEQQGCCFVKYATSEEAERAI 180
Score = 94 (38.1 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK-SNKKPYKGSEN 161
T +E +E F YG + D ++K+ + +GCGF+ ++++ A+ A+ S +G E
Sbjct: 225 TAKEIEEIFAPYGHVEDVYIMKDGMRQSRGCGFVKFSSREPALAAMSALSGNYVMRGCEQ 284
Query: 162 GLISPFHD 169
LI F D
Sbjct: 285 PLIIRFAD 292
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN ++ +E KE F Q+G + +++++ GK KG GF++Y A KA+ + N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 95 KKPYKGKI 102
K GK+
Sbjct: 253 GKEISGKV 260
Score = 107 (42.7 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 38/162 (23%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + ++ +E KE F Q+G + +++++ GK KG GF++Y A KA+ + N K
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + +K K + E I R+ + I NL++ ++ ++++
Sbjct: 256 ISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 89 (36.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG F+++ + +A KAI K
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 124 (48.7 bits), Expect = 0.00018, P = 0.00018
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN ++ +E KE F Q+G + +++++ GK KG GF++Y A KA+ + N
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 95 KKPYKGKI 102
K GK+
Sbjct: 253 GKEISGKV 260
Score = 107 (42.7 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 38/162 (23%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + ++ +E KE F Q+G + +++++ GK KG GF++Y A KA+ + N K
Sbjct: 196 KNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + +K K + E I R+ + I NL++ ++ ++++
Sbjct: 256 ISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 89 (36.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG F+++ + +A KAI K
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 119 (46.9 bits), Expect = 0.00063, P = 0.00063
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN ++ +E +E F Q+G + +++++ GK KG GF++Y A KA+ + N
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 95 KKPYKGK 101
K GK
Sbjct: 253 GKEMSGK 259
Score = 107 (42.7 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 37/162 (22%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + ++ +E +E F Q+G + +++++ GK KG GF++Y A KA+ + N K
Sbjct: 196 KNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + +K K + E I R+ + I NL++ ++ ++++
Sbjct: 256 MSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 89 (36.4 bits), Expect = 2.9e-07, Sum P(2) = 2.9e-07
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG F+++ + +A KAI K
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAANKAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>TAIR|locus:2037633 [details] [associations]
symbol:RBP1 "RNA-binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0008283 "cell proliferation" evidence=TAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 GO:GO:0008283
GO:GO:0003727 Gene3D:3.30.70.330 EMBL:AB077822 KO:K14411
EMBL:AC082643 HSSP:Q61474 EMBL:AY054536 EMBL:AY064643
IPI:IPI00548887 PIR:F96618 RefSeq:NP_176143.1 UniGene:At.17236
ProteinModelPortal:Q9C652 SMR:Q9C652 IntAct:Q9C652 STRING:Q9C652
PRIDE:Q9C652 EnsemblPlants:AT1G58470.1 GeneID:842216
KEGG:ath:AT1G58470 TAIR:At1g58470 InParanoid:Q9C652 OMA:VTYDSED
PhylomeDB:Q9C652 ProtClustDB:CLSN2914680 Genevestigator:Q9C652
Uniprot:Q9C652
Length = 360
Score = 109 (43.4 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 21/60 (35%), Positives = 37/60 (61%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAI 90
R +LF+ + + +EE K++F +YG +++A + K GK +G GF+ +AN VKA+
Sbjct: 5 RYKLFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKAL 64
Score = 80 (33.2 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAILKSN 152
TEEEFK +F ++G D ++ + + +G GF+ Y ++ S V+ +++SN
Sbjct: 132 TEEEFKSYFERFGRTTDVVVMHDGVTNRPRGFGFVTYDSEDS-VEVVMQSN 181
>TAIR|locus:2133862 [details] [associations]
symbol:AT4G26650 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0042732 "D-xylose
metabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002687 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 EMBL:AF419605 EMBL:AY097345 IPI:IPI00533249
RefSeq:NP_567753.1 UniGene:At.20416 UniGene:At.67937
ProteinModelPortal:Q8W569 SMR:Q8W569 STRING:Q8W569 PRIDE:Q8W569
EnsemblPlants:AT4G26650.1 GeneID:828772 KEGG:ath:AT4G26650
TAIR:At4g26650 InParanoid:Q8W569 OMA:LVEAVIM PhylomeDB:Q8W569
ProtClustDB:CLSN2689626 Genevestigator:Q8W569 Uniprot:Q8W569
Length = 455
Score = 115 (45.5 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 24/73 (32%), Positives = 45/73 (61%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 91
G+LFI + + EE +E+FG+YGD+++A ++++ G+ +G GFI +A+ A + I+
Sbjct: 15 GKLFIGGISWDTDEERLQEYFGKYGDLVEAVIMRDRTTGRARGFGFIVFADPSVAERVIM 74
Query: 92 KSNKKPYKGKITE 104
+K G+ E
Sbjct: 75 --DKHIIDGRTVE 85
Score = 72 (30.4 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 17/51 (33%), Positives = 30/51 (58%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKS 151
ITE EFK +F Q+G I D ++ + + + +G GFI + ++ S + K+
Sbjct: 133 ITEAEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSEESVDMVLHKT 183
Score = 42 (19.8 bits), Expect = 3.1e-07, Sum P(3) = 3.1e-07
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 199 LNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALP 235
LN + +K+ + K N P GY NYG +P
Sbjct: 187 LNGKMVEVKRAVPKELSSTTPNRSPLIGYGNNYGVVP 223
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 126 (49.4 bits), Expect = 0.00011, P = 0.00011
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN ++ +E KE F Q+G + +++++ +GK KG GF++Y A KA+ + N
Sbjct: 193 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 95 KKPYKGKI 102
K GKI
Sbjct: 253 GKEISGKI 260
Score = 107 (42.7 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 38/162 (23%), Positives = 74/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + ++ +E KE F Q+G + +++++ +GK KG GF++Y A KA+ + N K
Sbjct: 196 KNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + +K K + E I R+ + I NL++ ++ ++++
Sbjct: 256 ISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 89 (36.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG F+++ + +A KAI K
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 101 (40.6 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LFI +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 111
Score = 92 (37.4 bits), Expect = 3.1e-07, Sum P(2) = 3.1e-07
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
+E++ + F +G+I + +L+ DG KGC F+ Y++ A AI + G+ +
Sbjct: 153 SEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASS 212
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 213 SLVVKFAD 220
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 101 (40.6 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LFI +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 111
Score = 92 (37.4 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
+E++ + F +G+I + +L+ DG KGC F+ Y++ A AI + G+ +
Sbjct: 153 SEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASS 212
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 213 SLVVKFAD 220
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 101 (40.6 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 36/162 (22%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E KE FG++G + +++ + GK KG GF+++ A KA+ + N K
Sbjct: 132 KNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 191
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + + +K K M + I R+ + + NL++ ++ ++++
Sbjct: 192 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 251
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 252 PFGTITSAKVMMEGGRSKGFGFV--CFSSPEEATKAVTEMNG 291
Score = 94 (38.1 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 35 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 93
Query: 93 SN 94
N
Sbjct: 94 MN 95
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 119 (46.9 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 33/106 (31%), Positives = 51/106 (48%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN-KKPYKGS 159
K EE +E F ++G I D +L++ DGK +GC F+ + N+ AV A + + + +G
Sbjct: 152 KHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVATKEMHHSQTMEGC 211
Query: 160 ENGLISPFHDIPLYSNVKDK--IFNMVVEIPRWTNAKMEINLNEPL 203
L+ F D +VK K I P+ A + NLN L
Sbjct: 212 SAPLVVKFADTQKDKDVKTKSMITGSGAGSPKGGAASLLQNLNPAL 257
Score = 118 (46.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
+LFI L K EE +E F ++G I D +L++ DGK +GC F+ + N+ AV A
Sbjct: 143 KLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSRGCAFVTFTNRSCAVVA 198
Score = 75 (31.5 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 13/57 (22%), Positives = 32/57 (56%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKA 89
++F+ +P + E + + F +YG + +L++ + KGC F+ + ++ A++A
Sbjct: 56 KMFVGQIPRQWNETDCRRLFEKYGSVFSCNILRDKSTQASKGCCFVTFYHRKDAIEA 112
Score = 61 (26.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 15/43 (34%), Positives = 22/43 (51%)
Query: 111 FGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKSN 152
F +G I+ A++ + L C GF++Y N SA AI N
Sbjct: 523 FAPFGGILSAKVFIDKVTNLSKCFGFVSYENAQSATNAISAMN 565
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 119 (46.9 bits), Expect = 0.00067, P = 0.00067
Identities = 22/67 (32%), Positives = 39/67 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN ++ +E +E F Q+G + +++++ GK KG GF++Y A KA+ + N
Sbjct: 193 VYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 95 KKPYKGK 101
K GK
Sbjct: 253 GKEMSGK 259
Score = 107 (42.7 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 37/162 (22%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + ++ +E +E F Q+G + +++++ GK KG GF++Y A KA+ + N K
Sbjct: 196 KNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + +K K + E I R+ + I NL++ ++ ++++
Sbjct: 256 MSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 89 (36.4 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG F+++ + +A KAI K
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAANKAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>UNIPROTKB|Q5ZHY2 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 GeneTree:ENSGT00410000025635
HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN EMBL:AADN02045251 EMBL:AADN02045250 EMBL:AJ721002
IPI:IPI00585337 RefSeq:NP_001012786.1 UniGene:Gga.16840 SMR:Q5ZHY2
Ensembl:ENSGALT00000007846 GeneID:415432 KEGG:gga:415432
InParanoid:Q5ZHY2 NextBio:20819040 Uniprot:Q5ZHY2
Length = 616
Score = 118 (46.6 bits), Expect = 0.00079, P = 0.00079
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
++F++NLPF +T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA
Sbjct: 540 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKA 594
Score = 111 (44.1 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 25/83 (30%), Positives = 45/83 (54%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R+FI N+P+ + + K+ + G++ +L K+A+GK +GCG + + ++ KA+
Sbjct: 117 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAL 176
Query: 91 LKSNKKPYKGK---ITEEEFKEH 110
NK G+ I E+ EH
Sbjct: 177 ETMNKYDLSGRPLNIKEDPEGEH 199
Score = 98 (39.6 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL FK+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 253 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 312
Score = 84 (34.6 bits), Expect = 3.3e-07, Sum P(2) = 3.3e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA N G E
Sbjct: 550 LTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGRE 607
Score = 73 (30.8 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 261 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 312
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 101 (40.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LFI +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 111
Score = 92 (37.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
+E++ + F +G+I + +L+ DG KGC F+ Y++ A AI + G+ +
Sbjct: 164 SEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASS 223
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 224 SLVVKFAD 231
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 101 (40.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LFI +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 111
Score = 92 (37.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
+E++ + F +G+I + +L+ DG KGC F+ Y++ A AI + G+ +
Sbjct: 164 SEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASS 223
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 224 SLVVKFAD 231
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 101 (40.6 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LFI +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKA 111
Score = 92 (37.4 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 19/68 (27%), Positives = 35/68 (51%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
+E++ + F +G+I + +L+ DG KGC F+ Y++ A AI + G+ +
Sbjct: 164 SEDDVRRLFEAFGNIEECTILRGPDGNSKGCAFVKYSSHAEAQAAINALHGSQTMPGASS 223
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 224 SLVVKFAD 231
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 124 (48.7 bits), Expect = 0.00020, P = 0.00020
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN ++ +E KE F Q+G + +++++ GK KG GF++Y A KA+ + N
Sbjct: 233 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 292
Query: 95 KKPYKGKI 102
K GK+
Sbjct: 293 GKEISGKV 300
Score = 107 (42.7 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 38/162 (23%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + ++ +E KE F Q+G + +++++ GK KG GF++Y A KA+ + N K
Sbjct: 236 KNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE 295
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + +K K + E I R+ + I NL++ ++ ++++
Sbjct: 296 ISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFS 355
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 356 PFGSITSAKVMLEDGRSKGFGFV--CFSSPEEATKAVTEMNG 395
Score = 89 (36.4 bits), Expect = 3.8e-07, Sum P(2) = 3.8e-07
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG F+++ + +A KAI K
Sbjct: 139 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEK 197
Query: 93 SN 94
N
Sbjct: 198 MN 199
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 123 (48.4 bits), Expect = 0.00024, P = 0.00024
Identities = 23/68 (33%), Positives = 40/68 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN ++ +E KE F Q+G + +++++ GK KG GF++Y A KA+ + N
Sbjct: 193 VYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMN 252
Query: 95 KKPYKGKI 102
K GK+
Sbjct: 253 GKEITGKV 260
Score = 106 (42.4 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 38/162 (23%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + ++ +E KE F Q+G + +++++ GK KG GF++Y A KA+ + N K
Sbjct: 196 KNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + +K K + E I R+ + I NL++ ++ ++++
Sbjct: 256 ITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGSITSAKVMLEDGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 89 (36.4 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG F+++ + +A KAI K
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 101 (40.6 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 36/162 (22%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E KE FG++G + +++ + GK KG GF+++ A KA+ + N K
Sbjct: 196 KNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + + +K K M + I R+ + + NL++ ++ ++++
Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 94 (38.1 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 101 (40.6 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 36/162 (22%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E KE FG++G + +++ + GK KG GF+++ A KA+ + N K
Sbjct: 196 KNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + + +K K M + I R+ + + NL++ ++ ++++
Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 94 (38.1 bits), Expect = 4.2e-07, Sum P(2) = 4.2e-07
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 120 (47.3 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 24/68 (35%), Positives = 39/68 (57%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+KN + +E+ KE F YG +++++A GK KG GF+ Y +A KA+L +
Sbjct: 201 VFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 95 KKPYKGKI 102
K GK+
Sbjct: 261 GKSINGKV 268
Score = 100 (40.3 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E+ KE F YG +++++A GK KG GF+ Y +A KA+L + K
Sbjct: 204 KNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKS 263
Query: 156 YKG 158
G
Sbjct: 264 ING 266
Score = 70 (29.7 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I F +G+I+ +++ + +G KG ++++ + +A +AI
Sbjct: 106 GNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGS-KGYAYVHFDSLAAANRAIWH 164
Query: 93 SN 94
N
Sbjct: 165 MN 166
Score = 67 (28.6 bits), Expect = 4.6e-07, Sum P(2) = 4.6e-07
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
I +E+ KE F +G I A+++ G+ KG G + +++ A KA+ + N
Sbjct: 313 IDDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVVCFSSFEDATKAVDEMN 362
>UNIPROTKB|F1PIL7 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:AAEX03016110
Ensembl:ENSCAFT00000022263 Uniprot:F1PIL7
Length = 492
Score = 118 (46.6 bits), Expect = 0.00057, P = 0.00057
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
++F++NLPF +T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA
Sbjct: 416 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKA 470
Score = 107 (42.7 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R+FI N+P+ + + K+ + G++ +L K+A+GK +GCG + + ++ KA+
Sbjct: 48 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAL 107
Query: 91 LKSNKKPYKGK 101
NK G+
Sbjct: 108 ETMNKYDLSGR 118
Score = 98 (39.6 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL FK+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 184 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 243
Score = 84 (34.6 bits), Expect = 5.0e-07, Sum P(2) = 5.0e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA N G E
Sbjct: 426 LTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGRE 483
Score = 73 (30.8 bits), Expect = 6.7e-06, Sum P(2) = 6.7e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 192 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 243
>WB|WBGene00006807 [details] [associations]
symbol:unc-75 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
"positive regulation of synaptic transmission, GABAergic"
evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
transmission, cholinergic" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
Uniprot:G5EE68
Length = 514
Score = 98 (39.6 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVK 88
+LF+ +P + E++ + F Q+G I + +LK+ G KGC F+ Y ++ SAV+
Sbjct: 30 KLFVGQIPRNLEEKDLRHLFEQFGKIYEFTILKDKYTGMHKGCAFLTYCHRDSAVR 85
Score = 94 (38.1 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN-KKPYKGSEN 161
+E+E + F +G++ + +L+ ADG KGC F+ Y + + A AI + + G+ +
Sbjct: 136 SEDEVRALFATFGELDEVTVLRGADGASKGCAFVKYKHGLDAHMAISALHGSQTMPGASS 195
Query: 162 GLISPFHD 169
L+ + D
Sbjct: 196 SLVVKYAD 203
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 108 (43.1 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 33/106 (31%), Positives = 53/106 (50%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANK---ISAVKAILKSNKKPYK 157
K+ E + ++ F +G I + +L++ +G+ KGC F+ +A K ISA+K L NK +
Sbjct: 454 KLNENDVRKLFEVHGAIEECTVLRDQNGQSKGCAFVTFATKHAAISAIKVTLSQNKI-ME 512
Query: 158 GSENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPL 203
G + L+ F D K KI + + W A N+N PL
Sbjct: 513 GCTSPLVVKFADTQKEKEQK-KIQQIQANL--WNLAS---NINIPL 552
Score = 88 (36.0 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKA 89
++F+ +P + E + +E F +YG + +L++ A G KGC F+ + + +A+KA
Sbjct: 358 KMFVGQVPKSMDESQLREMFEEYGAVHSINVLRDKATGISKGCCFVTFYTRHAALKA 414
>UNIPROTKB|A1L544 [details] [associations]
symbol:TNRC4 "Trinucleotide repeat containing 4"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
Length = 139
Score = 97 (39.2 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F Q+G I + ++K+ G KGC F+ Y + SA+KA
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA 64
Score = 62 (26.9 bits), Expect = 5.5e-07, Sum P(2) = 5.5e-07
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGC 133
T+E+ ++ F +G I + +L+ DG KGC
Sbjct: 107 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGC 137
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 102 (41.0 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F Q+G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 46 KLFVGQIPRNLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKA 102
Score = 82 (33.9 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
+EE+ F +G I + +L+ DG KGC F+ +++ A AI + G+ +
Sbjct: 146 SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 205
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 206 SLVVKFAD 213
Score = 57 (25.1 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 104 EEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKSN 152
+ E + F +G+II +++ + A + K GF+++ N SA AI N
Sbjct: 413 DTELTQMFLPFGNIISSKVFMDRATNQSKCFGFVSFDNPASAQTAIQAMN 462
Score = 45 (20.9 bits), Expect = 5.6e-07, Sum P(3) = 5.6e-07
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 366 SSRLETPPLIGSSGSENGLISP 387
+S L +PPL+G++ GL++P
Sbjct: 296 ASGLHSPPLLGTTAVP-GLVAP 316
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 110 (43.8 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 22/68 (32%), Positives = 38/68 (55%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN + +E KE F +YG + +++ + GK KG GF+++ A KA+ + N
Sbjct: 193 VYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMN 252
Query: 95 KKPYKGKI 102
K GK+
Sbjct: 253 GKDINGKM 260
Score = 93 (37.8 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E KE F +YG + +++ + GK KG GF+++ A KA+ + N K
Sbjct: 196 KNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEEMNGKD 255
Query: 156 YKG 158
G
Sbjct: 256 ING 258
Score = 86 (35.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 19/62 (30%), Positives = 36/62 (58%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG F+++ + +A +AI K
Sbjct: 99 GNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQDAADRAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
Score = 83 (34.3 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
I +E+ ++ F +G I A+++ DG+ KG GF+ +++ A KA+ + N
Sbjct: 305 IDDEKLRKEFSPFGSITSAKVMLE-DGRSKGFGFVCFSSPEEATKAVTEMN 354
>UNIPROTKB|D4AB08 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00780020 ProteinModelPortal:D4AB08
Ensembl:ENSRNOT00000007097 ArrayExpress:D4AB08 Uniprot:D4AB08
Length = 567
Score = 119 (46.9 bits), Expect = 0.00054, P = 0.00054
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
++F++NLPF +T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA
Sbjct: 491 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFESPESAEKA 545
Score = 107 (42.7 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R+FI N+P+ + + K+ + G++ +L K+A+GK +GCG + + ++ KA+
Sbjct: 90 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAL 149
Query: 91 LKSNKKPYKGK 101
NK G+
Sbjct: 150 ETMNKYDLSGR 160
Score = 98 (39.6 bits), Expect = 5.6e-06, Sum P(2) = 5.6e-06
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL FK+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 285
Score = 85 (35.0 bits), Expect = 5.7e-07, Sum P(2) = 5.7e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA N G E
Sbjct: 501 LTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFESPESAEKACRIMNGIKISGRE 558
Score = 73 (30.8 bits), Expect = 9.7e-06, Sum P(2) = 9.7e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 234 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 285
>UNIPROTKB|D4A1T2 [details] [associations]
symbol:Myef2 "Protein Myef2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0030182
"neuron differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1306547 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00357916 ProteinModelPortal:D4A1T2
Ensembl:ENSRNOT00000056055 ArrayExpress:D4A1T2 Uniprot:D4A1T2
Length = 574
Score = 119 (46.9 bits), Expect = 0.00055, P = 0.00055
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
++F++NLPF +T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA
Sbjct: 498 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFESPESAEKA 552
Score = 107 (42.7 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R+FI N+P+ + + K+ + G++ +L K+A+GK +GCG + + ++ KA+
Sbjct: 90 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAL 149
Query: 91 LKSNKKPYKGK 101
NK G+
Sbjct: 150 ETMNKYDLSGR 160
Score = 98 (39.6 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL FK+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 285
Score = 85 (35.0 bits), Expect = 5.9e-07, Sum P(2) = 5.9e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA N G E
Sbjct: 508 LTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFESPESAEKACRIMNGIKISGRE 565
Score = 73 (30.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 234 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 285
>UNIPROTKB|F1SN63 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0030182 "neuron differentiation" evidence=IEA]
[GO:0014902 "myotube differentiation" evidence=IEA] [GO:0005794
"Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 OMA:HEEYRSH EMBL:CU326370
EMBL:CU407256 Ensembl:ENSSSCT00000005147 Uniprot:F1SN63
Length = 533
Score = 118 (46.6 bits), Expect = 0.00064, P = 0.00064
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
++F++NLPF +T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA
Sbjct: 457 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKA 511
Score = 107 (42.7 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R+FI N+P+ + + K+ + G++ +L K+A+GK +GCG + + ++ KA+
Sbjct: 46 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAL 105
Query: 91 LKSNKKPYKGK 101
NK G+
Sbjct: 106 ETMNKYDLSGR 116
Score = 98 (39.6 bits), Expect = 6.0e-06, Sum P(2) = 6.0e-06
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL FK+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 182 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 241
Score = 84 (34.6 bits), Expect = 6.2e-07, Sum P(2) = 6.2e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA N G E
Sbjct: 467 LTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGRE 524
Score = 73 (30.8 bits), Expect = 8.3e-06, Sum P(2) = 8.3e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 190 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 241
>UNIPROTKB|Q83CD7 [details] [associations]
symbol:CBU_1183 "Glycine-rich RNA-binding protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 122 (48.0 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 26/83 (31%), Positives = 51/83 (61%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAI 90
+ ++++ +L + +T +E + FGQYG+I +A+L+ + + G+ KG FI Y + +A +A+
Sbjct: 17 QNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76
Query: 91 LKSNKKPYKG-KITEEEFKEHFG 112
K+N +G KI +E+ G
Sbjct: 77 SKANGIDLQGRKIRVNIARENTG 99
Score = 106 (42.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 87 VKAILKSNKKPYKGK----ITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANK 141
++ + S K Y G +T +E + FGQYG+I +A+L+ + + G+ KG FI Y +
Sbjct: 10 LRKMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQ 69
Query: 142 ISAVKAILKSN 152
+A +A+ K+N
Sbjct: 70 DAAQEAVSKAN 80
>TIGR_CMR|CBU_1183 [details] [associations]
symbol:CBU_1183 "nucleic acid binding domain protein"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000276232 OMA:KRVHIPT
RefSeq:NP_820178.2 ProteinModelPortal:Q83CD7 PRIDE:Q83CD7
GeneID:1209086 KEGG:cbu:CBU_1183 PATRIC:17931107
ProtClustDB:CLSK914597 BioCyc:CBUR227377:GJ7S-1169-MONOMER
Uniprot:Q83CD7
Length = 117
Score = 122 (48.0 bits), Expect = 6.3e-07, P = 6.3e-07
Identities = 26/83 (31%), Positives = 51/83 (61%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAI 90
+ ++++ +L + +T +E + FGQYG+I +A+L+ + + G+ KG FI Y + +A +A+
Sbjct: 17 QNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQDAAQEAV 76
Query: 91 LKSNKKPYKG-KITEEEFKEHFG 112
K+N +G KI +E+ G
Sbjct: 77 SKANGIDLQGRKIRVNIARENTG 99
Score = 106 (42.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 24/71 (33%), Positives = 42/71 (59%)
Query: 87 VKAILKSNKKPYKGK----ITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANK 141
++ + S K Y G +T +E + FGQYG+I +A+L+ + + G+ KG FI Y +
Sbjct: 10 LRKMTMSQNKIYVGSLSYDVTADELQSFFGQYGEIEEAKLIMDRETGRSKGFAFITYGTQ 69
Query: 142 ISAVKAILKSN 152
+A +A+ K+N
Sbjct: 70 DAAQEAVSKAN 80
>RGD|1306547 [details] [associations]
symbol:Myef2 "myelin expression factor 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005794 "Golgi apparatus"
evidence=IEA;ISO] [GO:0014902 "myotube differentiation"
evidence=IEA;ISO] [GO:0030182 "neuron differentiation"
evidence=IEA;ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1306547 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 CTD:50804 OMA:HEEYRSH
OrthoDB:EOG4VDPZN IPI:IPI00209446 RefSeq:NP_001013223.2
UniGene:Rn.1269 ProteinModelPortal:D4AEI5
Ensembl:ENSRNOT00000007103 GeneID:679712 KEGG:rno:679712
UCSC:RGD:1306547 NextBio:717095 ArrayExpress:D4AEI5 Uniprot:D4AEI5
Length = 591
Score = 119 (46.9 bits), Expect = 0.00058, P = 0.00058
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
++F++NLPF +T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA
Sbjct: 515 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFESPESAEKA 569
Score = 107 (42.7 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R+FI N+P+ + + K+ + G++ +L K+A+GK +GCG + + ++ KA+
Sbjct: 90 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAL 149
Query: 91 LKSNKKPYKGK 101
NK G+
Sbjct: 150 ETMNKYDLSGR 160
Score = 98 (39.6 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL FK+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 226 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 285
Score = 85 (35.0 bits), Expect = 6.4e-07, Sum P(2) = 6.4e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA N G E
Sbjct: 525 LTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFESPESAEKACRIMNGIKISGRE 582
Score = 73 (30.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 234 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 285
>UNIPROTKB|A6QQP0 [details] [associations]
symbol:MYEF2 "MYEF2 protein" species:9913 "Bos taurus"
[GO:0030182 "neuron differentiation" evidence=IEA] [GO:0014902
"myotube differentiation" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902 eggNOG:COG0724
GeneTree:ENSGT00410000025635 HOGENOM:HOG000231932
HOVERGEN:HBG054880 CTD:50804 OMA:HEEYRSH EMBL:DAAA02029125
EMBL:DAAA02029126 EMBL:BC149929 IPI:IPI00867158
RefSeq:NP_001095555.1 UniGene:Bt.99087 SMR:A6QQP0
Ensembl:ENSBTAT00000055253 GeneID:524920 KEGG:bta:524920
NextBio:20874060 Uniprot:A6QQP0
Length = 543
Score = 118 (46.6 bits), Expect = 0.00066, P = 0.00066
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
++F++NLPF +T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA
Sbjct: 467 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKA 521
Score = 107 (42.7 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R+FI N+P+ + + K+ + G++ +L K+A+GK +GCG + + ++ KA+
Sbjct: 99 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAL 158
Query: 91 LKSNKKPYKGK 101
NK G+
Sbjct: 159 ETMNKYDLSGR 169
Score = 98 (39.6 bits), Expect = 6.3e-06, Sum P(2) = 6.3e-06
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL FK+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 235 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 294
Score = 84 (34.6 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA N G E
Sbjct: 477 LTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGRE 534
Score = 73 (30.8 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 294
>TAIR|locus:2200965 [details] [associations]
symbol:PPa1 "pyrophosphorylase 1" species:3702
"Arabidopsis thaliana" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=ISM;IEA;IDA]
[GO:0008152 "metabolic process" evidence=ISS] [GO:0016020
"membrane" evidence=ISS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0019915 "lipid storage"
evidence=IMP] [GO:0000394 "RNA splicing, via endonucleolytic
cleavage and ligation" evidence=RCA] [GO:0009086 "methionine
biosynthetic process" evidence=RCA] HAMAP:MF_00209
InterPro:IPR008162 Pfam:PF00719 PROSITE:PS00387 EMBL:CP002684
GO:GO:0005829 GO:GO:0005634 GO:GO:0000287 GO:GO:0019915
GO:GO:0006796 KO:K01507 GO:GO:0004427 HOGENOM:HOG000236472
eggNOG:COG0221 Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
ProtClustDB:PLN02373 OMA:AMVIMEE HSSP:O59570 EMBL:AY052717
EMBL:AY057668 EMBL:AY065201 EMBL:AY081555 EMBL:AY085015
EMBL:BT001144 EMBL:AK226833 EMBL:AB493418 IPI:IPI00524320
RefSeq:NP_171613.1 UniGene:At.22088 UniGene:At.57123
ProteinModelPortal:Q93V56 SMR:Q93V56 IntAct:Q93V56 STRING:Q93V56
PaxDb:Q93V56 PRIDE:Q93V56 EnsemblPlants:AT1G01050.1 GeneID:839579
KEGG:ath:AT1G01050 TAIR:At1g01050 InParanoid:Q93V56
PhylomeDB:Q93V56 ArrayExpress:Q93V56 Genevestigator:Q93V56
Uniprot:Q93V56
Length = 212
Score = 135 (52.6 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 46/163 (28%), Positives = 77/163 (47%)
Query: 188 PRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETDAH 247
P+ N +EI + + D K G ++ ++ Y NYG +P+T
Sbjct: 46 PQIFNVVVEITKGSKVK-YELDKKTGLIKVDRILYSSVVYPHNYGFVPRTLCE------- 97
Query: 248 TGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLN 307
D DPIDVL I + G ++ +A+G++ +ID+G+ D KIIA+ V+DP
Sbjct: 98 -----DNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCVDDPEYKHYT 152
Query: 308 DVADIETHFPGYLKATNEWFKIYKIPDGKPENVLNTRVEGESS 350
D+ ++ H L +F+ YK + K E +N + ES+
Sbjct: 153 DIKELPPH---RLSEIRRFFEDYKKNENK-EVAVNDFLPSESA 191
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 100 (40.3 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LFI +P + E++ K F Q+G I + ++K+ G KGC F+ Y + SA+KA
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIKDKYTGMHKGCAFLTYCARESALKA 64
Score = 89 (36.4 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 20/72 (27%), Positives = 37/72 (51%)
Query: 100 GK-ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN-KKPYK 157
GK +++ + ++ F +G I + +L+ DG KGC F+ Y + A AI + +
Sbjct: 102 GKQLSDADVRKMFEPFGSIEECTVLRGPDGASKGCAFVKYQSNAEAQAAISALHGSRTLP 161
Query: 158 GSENGLISPFHD 169
G+ + L+ F D
Sbjct: 162 GASSSLVVKFAD 173
Score = 64 (27.6 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 101 KITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKSN 152
+ T+ E + F +G++I A++ + A + K GF+++ N SA AI N
Sbjct: 377 EFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN 429
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 101 (40.6 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F Q+G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 46 KLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDPYTGMHKGCAFLTYCARDSAIKA 102
Score = 82 (33.9 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
+EE+ F +G I + +L+ DG KGC F+ +++ A AI + G+ +
Sbjct: 146 SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 205
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 206 SLVVKFAD 213
Score = 45 (20.9 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 9/22 (40%), Positives = 16/22 (72%)
Query: 366 SSRLETPPLIGSSGSENGLISP 387
+S L +PPL+G++ GL++P
Sbjct: 296 ASGLHSPPLLGTTAVP-GLVAP 316
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 98 (39.6 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 35/162 (21%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E K+ FG++G + +++ + GK KG GF+++ A KA+ + N K
Sbjct: 151 KNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 210
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + + +K K M + I R+ + + NL++ ++ ++++
Sbjct: 211 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 270
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 271 PFGTITSAKVMMEGGRSKGFGFV--CFSSPEEATKAVTEMNG 310
Score = 94 (38.1 bits), Expect = 7.4e-07, Sum P(2) = 7.4e-07
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 54 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 112
Query: 93 SN 94
N
Sbjct: 113 MN 114
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 100 (40.3 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LFI +P + E++ K F Q+G I + ++K+ G KGC F+ Y + SA+KA
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKA 64
Score = 89 (36.4 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
T+E+ + F +G+I + +L+ DG KGC F+ + A AI + G+ +
Sbjct: 107 TDEDVRRMFETFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASS 166
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 167 SLVVKFAD 174
Score = 62 (26.9 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 101 KITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKSN 152
+ T+ E + F +G++I A++ + A + K GF+++ N SA AI N
Sbjct: 387 EFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQSMN 439
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 100 (40.3 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LFI +P + E++ K F Q+G I + ++K+ G KGC F+ Y + SA+KA
Sbjct: 8 KLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIKDKFTGMHKGCAFLTYCARESALKA 64
Score = 89 (36.4 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
T+E+ + F +G+I + +L+ DG KGC F+ + A AI + G+ +
Sbjct: 107 TDEDVRRMFEPFGNIDECTVLRGPDGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASS 166
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 167 SLVVKFAD 174
Score = 61 (26.5 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 101 KITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKSN 152
+ T+ E + F +G++I A++ + A + K GF+++ N SA AI N
Sbjct: 387 EFTDSEILQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPGSAQAAIQAMN 439
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 146 (56.5 bits), Expect = 7.9e-07, P = 7.9e-07
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 91
+ RL I+NL FK +E++ K F YG +++ + + DGK++G FI + N + A KA+
Sbjct: 113 KARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALK 172
Query: 92 KSNKKPYKGKITEEEFKEHFGQYGD 116
+N K KG+ ++ +Y D
Sbjct: 173 GANMKEIKGRTVAVDWAVAKDKYKD 197
Score = 110 (43.8 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 20/58 (34%), Positives = 34/58 (58%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
K +E++ K F YG +++ + + DGK++G FI + N + A KA+ +N K KG
Sbjct: 124 KCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALKGANMKEIKG 181
Score = 53 (23.7 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 14/59 (23%), Positives = 28/59 (47%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
LF+ LP ++ +E F Q G + ++ K +G G++ ++ + V+ LK
Sbjct: 6 LFVGRLPPSARSDQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFS-MLEDVQRALK 63
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 117 (46.2 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 22/68 (32%), Positives = 40/68 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+KN + +++ KE F +YG ++++++ GK KG GF+ Y +A KA+L +
Sbjct: 201 VFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLH 260
Query: 95 KKPYKGKI 102
K GK+
Sbjct: 261 GKSIDGKV 268
Score = 96 (38.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +++ KE F +YG ++++++ GK KG GF+ Y +A KA+L + K
Sbjct: 204 KNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQKAVLDLHGKS 263
Query: 156 YKG 158
G
Sbjct: 264 IDG 266
Score = 69 (29.3 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 17/62 (27%), Positives = 32/62 (51%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I F +G I+ +++ + +G KG ++++ + +A +AI
Sbjct: 106 GNIFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNGS-KGYAYVHFDSLAAANRAIWH 164
Query: 93 SN 94
N
Sbjct: 165 MN 166
Score = 68 (29.0 bits), Expect = 8.0e-07, Sum P(2) = 8.0e-07
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
I +E+ KE F +G I A+++ G+ KG G I +++ A KA+ + N
Sbjct: 313 IDDEKLKEEFSSFGSISRAKVMVEV-GQGKGFGVICFSSFEEATKAVDEMN 362
>ASPGD|ASPL0000063757 [details] [associations]
symbol:AN10941 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0030529 EMBL:BN001304 ProteinModelPortal:C8VBB9
EnsemblFungi:CADANIAT00000536 HOGENOM:HOG000162494 OMA:MNPAMMQ
Uniprot:C8VBB9
Length = 559
Score = 97 (39.2 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 21/74 (28%), Positives = 45/74 (60%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 91
G++FI L ++ T++ KE+F Q+G++ + ++++ A G+ +G GF+ + + V ++
Sbjct: 110 GKMFIGGLNWETTDQSLKEYFSQFGEVQECTVMRDSATGRSRGFGFLTFKDP-KTVNTVM 168
Query: 92 KSNKKPY-KGKITE 104
K+ Y GKI +
Sbjct: 169 V--KEHYLDGKIID 180
Score = 94 (38.1 bits), Expect = 8.3e-07, Sum P(2) = 8.3e-07
Identities = 20/48 (41%), Positives = 35/48 (72%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAIL 149
TE++FK+ F Q+G +IDA L+ + D G+ +G GF+ + ++ +AV+A L
Sbjct: 206 TEQDFKQFFMQFGRVIDATLMIDKDTGRPRGFGFVTFDSE-AAVEAAL 252
>UNIPROTKB|Q9P2K5 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0014902
"myotube differentiation" evidence=IEP] [GO:0030182 "neuron
differentiation" evidence=IEP] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005794 GO:GO:0030182
GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330 GO:GO:0006351
GO:GO:0003723 GO:GO:0014902 eggNOG:COG0724 EMBL:AC066612
HOVERGEN:HBG054880 EMBL:AB037762 EMBL:AK002075 EMBL:AK023133
EMBL:AC090526 EMBL:BC014533 EMBL:BC068523 EMBL:BC152420
EMBL:BC152451 EMBL:AF190159 IPI:IPI00292940 IPI:IPI00386418
IPI:IPI00555833 IPI:IPI00555987 RefSeq:NP_057216.2 UniGene:Hs.6638
ProteinModelPortal:Q9P2K5 SMR:Q9P2K5 STRING:Q9P2K5
PhosphoSite:Q9P2K5 DMDM:296439294 PaxDb:Q9P2K5 PRIDE:Q9P2K5
DNASU:50804 Ensembl:ENST00000267836 Ensembl:ENST00000324324
Ensembl:ENST00000561151 Ensembl:ENST00000561351 GeneID:50804
KEGG:hsa:50804 UCSC:uc001zwg.4 UCSC:uc001zwi.4 UCSC:uc001zwj.4
CTD:50804 GeneCards:GC15M048434 HGNC:HGNC:17940 HPA:HPA004883
neXtProt:NX_Q9P2K5 PharmGKB:PA134877084 InParanoid:Q9P2K5
OMA:HEEYRSH OrthoDB:EOG4VDPZN GenomeRNAi:50804 NextBio:53234
ArrayExpress:Q9P2K5 Bgee:Q9P2K5 CleanEx:HS_MYEF2
Genevestigator:Q9P2K5 GermOnline:ENSG00000104177 Uniprot:Q9P2K5
Length = 600
Score = 118 (46.6 bits), Expect = 0.00076, P = 0.00076
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
++F++NLPF +T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA
Sbjct: 524 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKA 578
Score = 107 (42.7 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R+FI N+P+ + + K+ + G++ +L K+A+GK +GCG + + ++ KA+
Sbjct: 99 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAL 158
Query: 91 LKSNKKPYKGK 101
NK G+
Sbjct: 159 ETMNKYDLSGR 169
Score = 84 (34.6 bits), Expect = 8.4e-07, Sum P(2) = 8.4e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA N G E
Sbjct: 534 LTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGRE 591
Score = 73 (30.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 243 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 294
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 126 (49.4 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN ++ +E KE F Q+G + +++++ +GK KG GF++Y A KA+ + N
Sbjct: 95 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 154
Query: 95 KKPYKGKI 102
K GKI
Sbjct: 155 GKEISGKI 162
Score = 107 (42.7 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 38/162 (23%), Positives = 74/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + ++ +E KE F Q+G + +++++ +GK KG GF++Y A KA+ + N K
Sbjct: 98 KNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE 157
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + +K K + E I R+ + I NL++ ++ ++++
Sbjct: 158 ISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKLRKEFS 217
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 218 PFGSITSAKVMLEDGRSKGFGFV--CFSSPEEATKAVTEMNG 257
Score = 83 (34.3 bits), Expect = 8.5e-07, Sum P(2) = 8.5e-07
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+FIKNL I + + F +G+I+ +++ + +G KG F+++ + +A KAI K N
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYAFVHFETQEAADKAIEKMN 61
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 146 (56.5 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 28/85 (32%), Positives = 48/85 (56%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 91
+ RL I+NL FK +E++ K F YG +++ + + DGK++G FI + N + A KA+
Sbjct: 113 KARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDGKMRGFAFIQFKNLLEAGKALK 172
Query: 92 KSNKKPYKGKITEEEFKEHFGQYGD 116
+N K KG+ ++ +Y D
Sbjct: 173 GANMKEIKGRTVAVDWAVAKDKYKD 197
>UNIPROTKB|F1PIK6 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0030182 "neuron differentiation"
evidence=IEA] [GO:0014902 "myotube differentiation" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0030182 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0014902
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022267 Uniprot:F1PIK6
Length = 611
Score = 118 (46.6 bits), Expect = 0.00078, P = 0.00078
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
++F++NLPF +T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA
Sbjct: 535 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKA 589
Score = 107 (42.7 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 21/71 (29%), Positives = 40/71 (56%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R+FI N+P+ + + K+ + G++ +L K+A+GK +GCG + + ++ KA+
Sbjct: 36 RNRVFISNIPYDMKWQAIKDLMREKVGEVTYVELFKDAEGKSRGCGVVEFKDEEFVKKAL 95
Query: 91 LKSNKKPYKGK 101
NK G+
Sbjct: 96 ETMNKYDLSGR 106
Score = 98 (39.6 bits), Expect = 8.5e-06, Sum P(2) = 8.5e-06
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL FK+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 134 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 193
Score = 84 (34.6 bits), Expect = 8.8e-07, Sum P(2) = 8.8e-07
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA N G E
Sbjct: 545 LTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGRE 602
Score = 73 (30.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 142 KVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 193
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 101 (40.6 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 20/62 (32%), Positives = 38/62 (61%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G+++IKNL I + + F +G+I++ + K+ DG +G GF+++ ++ +A AI K
Sbjct: 113 GKIYIKNLERSIDNKAVYDTFSVFGNILNCNVAKDEDGNSRGYGFVHFDSEEAARAAIEK 172
Query: 93 SN 94
N
Sbjct: 173 VN 174
Score = 82 (33.9 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 16/49 (32%), Positives = 29/49 (59%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 149
+ TE+ +E F YG I +L+ + +G+ + GF+ Y N SA+ A++
Sbjct: 213 EFTEQHLREMFEPYGRITSHKLMLDEEGRSRRFGFVAYENPQSALAAVI 261
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 98 (39.6 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 35/162 (21%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E K+ FG++G + +++ + GK KG GF+++ A KA+ + N K
Sbjct: 196 KNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + + +K K M + I R+ + + NL++ ++ ++++
Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 94 (38.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 98 (39.6 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 35/162 (21%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E K+ FG++G + +++ + GK KG GF+++ A KA+ + N K
Sbjct: 196 KNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + + +K K M + I R+ + + NL++ ++ ++++
Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 94 (38.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 98 (39.6 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 35/162 (21%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E K+ FG++G + +++ + GK KG GF+++ A KA+ + N K
Sbjct: 196 KNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + + +K K M + I R+ + + NL++ ++ ++++
Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 94 (38.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 98 (39.6 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 35/162 (21%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E K+ FG++G + +++ + GK KG GF+++ A KA+ + N K
Sbjct: 196 KNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + + +K K M + I R+ + + NL++ ++ ++++
Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 94 (38.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 98 (39.6 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 35/162 (21%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E K+ FG++G + +++ + GK KG GF+++ A KA+ + N K
Sbjct: 196 KNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + + +K K M + I R+ + + NL++ ++ ++++
Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 94 (38.1 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 98 (39.6 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 35/162 (21%), Positives = 73/162 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E K+ FG++G + +++ + GK KG GF+++ A KA+ + N K
Sbjct: 196 KNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + + +K K M + I R+ + + NL++ ++ ++++
Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGTITSAKVMMEGGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 94 (38.1 bits), Expect = 9.3e-07, Sum P(2) = 9.3e-07
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>TAIR|locus:2173967 [details] [associations]
symbol:AT5G55550 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K14411 HSSP:Q61474 ProtClustDB:CLSN2689626 EMBL:AY050796
EMBL:AY096460 IPI:IPI00543007 RefSeq:NP_568826.1 RefSeq:NP_974937.1
UniGene:At.6910 ProteinModelPortal:Q949Z3 SMR:Q949Z3 PRIDE:Q949Z3
EnsemblPlants:AT5G55550.2 EnsemblPlants:AT5G55550.3 GeneID:835649
KEGG:ath:AT5G55550 TAIR:At5g55550 InParanoid:Q949Z3 OMA:VSERVIM
PhylomeDB:Q949Z3 Genevestigator:Q949Z3 Uniprot:Q949Z3
Length = 460
Score = 109 (43.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 22/73 (30%), Positives = 44/73 (60%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 91
G+LFI + + EE +++F YGD+++A ++++ A G+ +G GFI +A+ + + I+
Sbjct: 6 GKLFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIM 65
Query: 92 KSNKKPYKGKITE 104
+K G+ E
Sbjct: 66 --DKHIIDGRTVE 76
Score = 78 (32.5 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAIL 149
ITEEEFK +F Q+G I D ++ + + + +G GFI + + AV +L
Sbjct: 121 ITEEEFKNYFDQFGTIADVVVMYDHNTQRPRGFGFITFDSD-DAVDRVL 168
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 120 (47.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 25/69 (36%), Positives = 39/69 (56%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
+LFI LPF T+EE +E +G + D +L+ N GK KG ++ Y N+ A +A++K
Sbjct: 41 KLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 100
Query: 94 NKKPYKGKI 102
+ K I
Sbjct: 101 DGMTIKENI 109
>UNIPROTKB|F8VZ49 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 EMBL:AC078778
HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022460
ProteinModelPortal:F8VZ49 SMR:F8VZ49 PRIDE:F8VZ49
Ensembl:ENST00000548688 ArrayExpress:F8VZ49 Bgee:F8VZ49
Uniprot:F8VZ49
Length = 231
Score = 112 (44.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 34 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 91
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 92 -NARPHKVDGRVVE 104
Score = 63 (27.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 124 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 183
Query: 150 K 150
+
Sbjct: 184 Q 184
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 97 (39.2 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F Q+G I + ++K+ G KGC F+ Y + SA+KA
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA 64
Score = 89 (36.4 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
T+E+ ++ F +G I + +L+ DG KGC F+ + A AI + + G+ +
Sbjct: 107 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 166
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 167 SLVVKFAD 174
Score = 63 (27.2 bits), Expect = 0.00055, Sum P(2) = 0.00055
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 101 KITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKSN 152
+ T+ E + F +G +I A++ + A + K GF+++ N SA AI N
Sbjct: 340 EFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN 392
>TAIR|locus:2007903 [details] [associations]
symbol:AT1G17640 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K12741 OMA:GHQTGYK IPI:IPI00519530 RefSeq:NP_173208.1
UniGene:At.51654 ProteinModelPortal:F4I906 SMR:F4I906 PRIDE:F4I906
EnsemblPlants:AT1G17640.1 GeneID:838341 KEGG:ath:AT1G17640
Uniprot:F4I906
Length = 369
Score = 101 (40.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 17/59 (28%), Positives = 37/59 (62%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAI 90
G+LF+ + ++ T E F +FG++G+++D+ ++ + G +G GF+ +A+ A K +
Sbjct: 66 GKLFVGGVSWETTAETFANYFGKFGEVVDSVIMTDRITGNPRGFGFVTFADSAVAEKVL 124
Score = 83 (34.3 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 21/66 (31%), Positives = 38/66 (57%)
Query: 82 NKISAVKAILKSNKKPYKGK---ITEEEFKEHFGQYGDIIDAQLL-KNADGKLKGCGFIN 137
+K + +KA+ K+ K G + E+E K +F YGDII+ Q++ + G+ +G GF+
Sbjct: 145 DKDTDIKAVSKTRKIFVGGLPPLLEEDELKNYFCVYGDIIEHQIMYDHHTGRSRGFGFVT 204
Query: 138 YANKIS 143
+ + S
Sbjct: 205 FQTEDS 210
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 119 (46.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 23/70 (32%), Positives = 40/70 (57%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 91
+ RL I+NL FK E++ K+ F ++G +++A++ DGK +G F+ + A KA+
Sbjct: 235 KSRLIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALT 294
Query: 92 KSNKKPYKGK 101
N K K +
Sbjct: 295 AMNGKKIKDR 304
Score = 73 (30.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 18/57 (31%), Positives = 32/57 (56%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKS-NKKPYKG 158
EE +E Q+G++ +++ N D G KGC F + +K +A K I + ++K + G
Sbjct: 452 EEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFKSKEAAEKCIAAALDEKEFSG 508
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 97 (39.2 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 37/162 (22%), Positives = 71/162 (43%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E KE FGQYG + +++ + GK +G GF+++ A KA+ N K
Sbjct: 196 KNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKD 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + + +K K M + I R+ + + NL++ ++ ++++
Sbjct: 256 LNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERLRKEFT 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G +G + + +P+E T A T G
Sbjct: 316 PFGSITSAKVMMEGGRSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 93 (37.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIDK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>DICTYBASE|DDB_G0284663 [details] [associations]
symbol:mrd1 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
[GO:0030515 "snoRNA binding" evidence=ISS] [GO:0006364 "rRNA
processing" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
[GO:0005634 "nucleus" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 dictyBase:DDB_G0284663 GO:GO:0005730
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0030515
Gene3D:3.30.70.330 GO:GO:0006364 eggNOG:COG0724 EMBL:AAFI02000070
KO:K14787 RefSeq:XP_638463.1 HSSP:Q8R3C6 ProteinModelPortal:Q54PB2
SMR:Q54PB2 STRING:Q54PB2 EnsemblProtists:DDB0233347 GeneID:8624714
KEGG:ddi:DDB_G0284663 OMA:YLEWAPR Uniprot:Q54PB2
Length = 895
Score = 121 (47.7 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 23/57 (40%), Positives = 39/57 (68%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R+ +K LP +T++ FKEHF ++G + DA+++K DGK + GFI ++ + SA A+
Sbjct: 5 RICVKQLPKHLTDKRFKEHFEKFGTVTDAKIIKK-DGKSRLFGFIGFSTEQSAKNAL 60
Score = 101 (40.6 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 22/71 (30%), Positives = 42/71 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAIL 91
GR+F++NL + EE+ ++ F ++G I + + + D K KG FI Y +AV+A+
Sbjct: 361 GRIFVRNLSYSTKEEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALN 420
Query: 92 KSNKKPYKGKI 102
+ K ++G++
Sbjct: 421 DMDGKVFQGRL 431
Score = 71 (30.1 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 40/161 (24%), Positives = 68/161 (42%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLL-----KNADGKLK-GCGFINYANKISAVKAILKSNKK 154
K T E F D ++ + KN +L G GFI +++K A + I K N
Sbjct: 688 KTTNETLVGKFKSLKDYVNVNIATKANPKNPSERLPCGFGFIEFSSKQGAYECIKKLNGS 747
Query: 155 PYKGSENGL-ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKG 213
G E L +S ++ +NV++ N E+P + ++ N +P P + I K
Sbjct: 748 SIDGYEISLKLSDKNE----TNVQE--INKRRELPENSKQSIKSNGGQPNKPSSKIIIK- 800
Query: 214 NLRYVANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDG 254
NL + + + YG + Q+ P + + G +G G
Sbjct: 801 NLPFESTIKEIRKLFTAYGEI-QSVRIPKKPNG--GHRGFG 838
Score = 63 (27.2 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 17/56 (30%), Positives = 31/56 (55%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSNKKPYKG 158
EE+ ++ F ++G I + + + D K KG FI Y +AV+A+ + K ++G
Sbjct: 374 EEDLEKVFSKFGKISEIHIPIDYDSKKSKGIAFILYLIPENAVQALNDMDGKVFQG 429
Score = 42 (19.8 bits), Expect = 6.8e-06, Sum P(3) = 6.8e-06
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 379 GSENGLISPFHDIPLY 394
G +N S FH +PLY
Sbjct: 604 GFKNLAYSKFHHVPLY 619
>MGI|MGI:1926465 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003823
"antigen binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=ISO] [GO:0019904 "protein domain specific binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1926465 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887 OMA:PGIERMA
ChiTaRS:HNRNPM InterPro:IPR024666 PANTHER:PTHR23003:SF6
Pfam:PF11532 EMBL:AK011521 EMBL:BC005758 EMBL:BC065172
IPI:IPI00132443 IPI:IPI00480357 RefSeq:NP_001103383.1
RefSeq:NP_084080.1 UniGene:Mm.311439 ProteinModelPortal:Q9D0E1
SMR:Q9D0E1 IntAct:Q9D0E1 STRING:Q9D0E1 PhosphoSite:Q9D0E1
PaxDb:Q9D0E1 PRIDE:Q9D0E1 Ensembl:ENSMUST00000087582
Ensembl:ENSMUST00000148178 GeneID:76936 KEGG:mmu:76936
InParanoid:Q9D0E1 NextBio:346119 Bgee:Q9D0E1 Genevestigator:Q9D0E1
Uniprot:Q9D0E1
Length = 729
Score = 110 (43.8 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL +K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 205 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFN 264
Score = 102 (41.0 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R FI N+PF + + K+ + G++ +LL +A+GK +GC + + + S KA
Sbjct: 69 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAA 128
Query: 91 LKSNKKPYKG---KITEEEFKEH 110
NK G K+ E+ EH
Sbjct: 129 EVLNKHSLSGRPLKVKEDPDGEH 151
Score = 89 (36.4 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 213 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGIVTFEQSIEAVQAISMFN 264
Score = 68 (29.0 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
T + K+ F + G ++ A + K +GK KGCG + + + A +A N G E
Sbjct: 664 TWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 720
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 95 (38.5 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 25/111 (22%), Positives = 54/111 (48%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E K+ FG++G + +++ + GK KG GF+++ A KA+ + N K
Sbjct: 196 KNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLN 204
G + + + + +K K M + I R+ + + NL++ ++
Sbjct: 256 LNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGID 306
Score = 94 (38.1 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 97 (39.2 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F Q+G I + ++K+ G KGC F+ Y + SA+KA
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA 64
Score = 89 (36.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
T+E+ ++ F +G I + +L+ DG KGC F+ + A AI + + G+ +
Sbjct: 107 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 166
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 167 SLVVKFAD 174
Score = 63 (27.2 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 101 KITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKSN 152
+ T+ E + F +G +I A++ + A + K GF+++ N SA AI N
Sbjct: 386 EFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN 438
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 97 (39.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F Q+G I + ++K+ G KGC F+ Y + SA+KA
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA 64
Score = 89 (36.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
T+E+ ++ F +G I + +L+ DG KGC F+ + A AI + + G+ +
Sbjct: 107 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 166
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 167 SLVVKFAD 174
Score = 63 (27.2 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 101 KITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKSN 152
+ T+ E + F +G +I A++ + A + K GF+++ N SA AI N
Sbjct: 390 EFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN 442
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 97 (39.2 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F Q+G I + ++K+ G KGC F+ Y + SA+KA
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA 64
Score = 89 (36.4 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
T+E+ ++ F +G I + +L+ DG KGC F+ + A AI + + G+ +
Sbjct: 106 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 165
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 166 SLVVKFAD 173
Score = 63 (27.2 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 101 KITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKSN 152
+ T+ E + F +G +I A++ + A + K GF+++ N SA AI N
Sbjct: 390 EFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN 442
>UNIPROTKB|H0YKS1 [details] [associations]
symbol:MYEF2 "Myelin expression factor 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005794 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC066612 EMBL:AC090526 HGNC:HGNC:17940
Ensembl:ENST00000560172 Uniprot:H0YKS1
Length = 126
Score = 118 (46.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
++F++NLPF +T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA
Sbjct: 50 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKA 104
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 96 (38.9 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LFI +P + E++ + F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 48 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCARESALKA 104
Score = 91 (37.1 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINY---ANKISAVKAILKSNKKPYKGSE 160
E++ + F +G I + +L+ DG KGC F+ Y A +A+ A+ S P G+
Sbjct: 148 EDDVRRLFESFGSIEECTILRGPDGNSKGCAFVKYSTHAEAQAAISALHGSQTMP--GAS 205
Query: 161 NGLISPFHD 169
+ L+ F D
Sbjct: 206 SSLVVKFAD 214
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 97 (39.2 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F Q+G I + ++K+ G KGC F+ Y + SA+KA
Sbjct: 8 KLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA 64
Score = 89 (36.4 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
T+E+ ++ F +G I + +L+ DG KGC F+ + A AI + + G+ +
Sbjct: 107 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 166
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 167 SLVVKFAD 174
Score = 63 (27.2 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 101 KITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKSN 152
+ T+ E + F +G +I A++ + A + K GF+++ N SA AI N
Sbjct: 419 EFTDSEILQMFVPFGHVISAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMN 471
>UNIPROTKB|Q9NW13 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005794 GO:GO:0005730 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 EMBL:CH471070 EMBL:CH236947 eggNOG:COG0724
EMBL:AC010655 KO:K14573 EMBL:AK001239 EMBL:AK222716 EMBL:AC018635
EMBL:BC013889 IPI:IPI00304187 RefSeq:NP_001159607.1
RefSeq:NP_060547.2 UniGene:Hs.274263 ProteinModelPortal:Q9NW13
SMR:Q9NW13 IntAct:Q9NW13 STRING:Q9NW13 PhosphoSite:Q9NW13
DMDM:55976611 SWISS-2DPAGE:Q9NW13 PaxDb:Q9NW13 PeptideAtlas:Q9NW13
PRIDE:Q9NW13 Ensembl:ENST00000223073 GeneID:55131 KEGG:hsa:55131
UCSC:uc003vmp.2 CTD:55131 GeneCards:GC07M127951 HGNC:HGNC:21863
HPA:HPA019058 HPA:HPA026672 MIM:612074 MIM:612079
neXtProt:NX_Q9NW13 Orphanet:157954 PharmGKB:PA134867266
HOGENOM:HOG000124666 HOVERGEN:HBG073213 InParanoid:Q9NW13
OMA:MRSKPAT OrthoDB:EOG4SN1NH PhylomeDB:Q9NW13 ChiTaRS:RBM28
GenomeRNAi:55131 NextBio:58802 ArrayExpress:Q9NW13 Bgee:Q9NW13
CleanEx:HS_RBM28 Genevestigator:Q9NW13 GermOnline:ENSG00000106344
Uniprot:Q9NW13
Length = 759
Score = 150 (57.9 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 28/85 (32%), Positives = 49/85 (57%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 91
+ RL I+NL FK +E++ K F Q+G +++ + + DGK++G GF+ + N + A KA+
Sbjct: 113 KARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALK 172
Query: 92 KSNKKPYKGKITEEEFKEHFGQYGD 116
N K KG+ ++ +Y D
Sbjct: 173 GMNMKEIKGRTVAVDWAVAKDKYKD 197
Score = 114 (45.2 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
K +E++ K F Q+G +++ + + DGK++G GF+ + N + A KA+ N K KG
Sbjct: 124 KCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKALKGMNMKEIKG 181
Score = 56 (24.8 bits), Expect = 0.00034, Sum P(3) = 0.00034
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
LF+ LP E+ +E F Q G + ++ K +G G++ ++ + V+ LK
Sbjct: 6 LFVGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFS-MLEDVQRALK 63
Score = 37 (18.1 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 7/28 (25%), Positives = 16/28 (57%)
Query: 241 PDETDAHTGQKGDGDPIDVLEIGERIAK 268
P ++ H+ + D + D ++ GE +A+
Sbjct: 277 PAKSSDHSEEDSDLEESDSIDDGEELAQ 304
>UNIPROTKB|F1NS10 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:AADN02063494
EMBL:AADN02063495 EMBL:AADN02063496 IPI:IPI00599569
Ensembl:ENSGALT00000000512 ArrayExpress:F1NS10 Uniprot:F1NS10
Length = 559
Score = 109 (43.4 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL +K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 195 VFVANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAISMFN 254
Query: 95 -----KKPYKGKITEEEF 107
+P K+ E F
Sbjct: 255 GQLLFDRPMHVKMDERAF 272
Score = 100 (40.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R FI N+PF + + K+ + G++ +LL +A+GK +GC + + + S KA
Sbjct: 58 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAA 117
Query: 91 LKSNKKPYKG---KITEEEFKEH 110
NK G K+ E+ EH
Sbjct: 118 EVLNKHSLGGRPLKVKEDPDGEH 140
Score = 87 (35.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 203 KVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAISMFN 254
Score = 68 (29.0 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
T + K+ F + G ++ A + K +GK KGCG + + + A +A N +G E
Sbjct: 494 TWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVRFESPEVAERACRMMNGIQLRGRE 550
>RGD|620369 [details] [associations]
symbol:Hnrnpm "heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;TAS] [GO:0003823 "antigen binding" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005681
"spliceosomal complex" evidence=IEA;ISO] [GO:0016363 "nuclear
matrix" evidence=IEA;ISO] [GO:0019904 "protein domain specific
binding" evidence=ISO] [GO:0042382 "paraspeckles" evidence=ISO]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:620369 GO:GO:0003823 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0016363
GO:GO:0000398 eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 108 (43.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL +K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 166 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 225
Score = 102 (41.0 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R FI N+PF + + K+ + G++ +LL +A+GK +GC + + + S KA
Sbjct: 69 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAA 128
Query: 91 LKSNKKPYKG---KITEEEFKEH 110
NK G K+ E+ EH
Sbjct: 129 EVLNKHSLSGRPLKVKEDPDGEH 151
Score = 87 (35.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 174 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 225
Score = 68 (29.0 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
T + K+ F + G ++ A + K +GK KGCG + + + A +A N G E
Sbjct: 625 TWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 681
>UNIPROTKB|F1LV13 [details] [associations]
symbol:Hnrpm "Protein Hnrpm" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
IPI:IPI01016435 RefSeq:NP_446328.2 UniGene:Rn.10156 GeneID:116655
KEGG:rno:116655 NextBio:619427 PRIDE:F1LV13
Ensembl:ENSRNOT00000011047 Uniprot:F1LV13
Length = 690
Score = 108 (43.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL +K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 166 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 225
Score = 102 (41.0 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R FI N+PF + + K+ + G++ +LL +A+GK +GC + + + S KA
Sbjct: 69 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAA 128
Query: 91 LKSNKKPYKG---KITEEEFKEH 110
NK G K+ E+ EH
Sbjct: 129 EVLNKHSLSGRPLKVKEDPDGEH 151
Score = 87 (35.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 174 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 225
Score = 68 (29.0 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
T + K+ F + G ++ A + K +GK KGCG + + + A +A N G E
Sbjct: 625 TWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 681
>UNIPROTKB|Q62826 [details] [associations]
symbol:Hnrnpm "Heterogeneous nuclear ribonucleoprotein M"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:620369 GO:GO:0003823 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0016363 GO:GO:0000398
eggNOG:COG0724 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:U32577
EMBL:BC088317 IPI:IPI00209148 IPI:IPI01016435 RefSeq:NP_001103381.1
RefSeq:NP_446328.2 UniGene:Rn.10156 ProteinModelPortal:Q62826
SMR:Q62826 PhosphoSite:Q62826 PRIDE:Q62826
Ensembl:ENSRNOT00000059985 GeneID:116655 KEGG:rno:116655
UCSC:RGD:620369 NextBio:619427 Genevestigator:Q62826
GermOnline:ENSRNOG00000007921 Uniprot:Q62826
Length = 690
Score = 108 (43.1 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL +K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 166 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 225
Score = 102 (41.0 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R FI N+PF + + K+ + G++ +LL +A+GK +GC + + + S KA
Sbjct: 69 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAA 128
Query: 91 LKSNKKPYKG---KITEEEFKEH 110
NK G K+ E+ EH
Sbjct: 129 EVLNKHSLSGRPLKVKEDPDGEH 151
Score = 87 (35.7 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 174 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 225
Score = 68 (29.0 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
T + K+ F + G ++ A + K +GK KGCG + + + A +A N G E
Sbjct: 625 TWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 681
>UNIPROTKB|F1SA50 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 OMA:PGIERMA InterPro:IPR024666
PANTHER:PTHR23003:SF6 Pfam:PF11532 EMBL:FP090904
Ensembl:ENSSSCT00000014856 Uniprot:F1SA50
Length = 704
Score = 108 (43.1 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL +K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 180 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 239
Score = 102 (41.0 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R FI N+PF + + K+ + G++ +LL +A+GK +GC + + + S KA
Sbjct: 83 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAA 142
Query: 91 LKSNKKPYKG---KITEEEFKEH 110
NK G K+ E+ EH
Sbjct: 143 EVLNKHSLSGRPLKVKEDPDGEH 165
Score = 87 (35.7 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 188 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 239
Score = 68 (29.0 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
T + K+ F + G ++ A + K +GK KGCG + + + A +A N G E
Sbjct: 639 TWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 695
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 102 (41.0 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LFI +P + E++ K F Q+G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 137 KLFIGQIPRNLEEKDLKPLFEQFGKIHELTVLKDRYTGMHKGCAFLTYCARESAIKA 193
Score = 85 (35.0 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 22/62 (35%), Positives = 32/62 (51%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINY---ANKISAVKAILKSNKKPYKGS 159
TEE+ F YG I + +L+ DG KGC F+ + A SA+ A+ S P GS
Sbjct: 236 TEEDVYRLFEPYGVIEECTVLRGPDGNSKGCAFVKFSTHAEAQSAISALHGSQTMP-TGS 294
Query: 160 EN 161
++
Sbjct: 295 DS 296
>UNIPROTKB|C9JE21 [details] [associations]
symbol:RBM28 "RNA-binding protein 28" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC010655
EMBL:AC018635 HGNC:HGNC:21863 ChiTaRS:RBM28 IPI:IPI00944978
ProteinModelPortal:C9JE21 SMR:C9JE21 STRING:C9JE21
Ensembl:ENST00000459726 ArrayExpress:C9JE21 Bgee:C9JE21
Uniprot:C9JE21
Length = 204
Score = 130 (50.8 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
+ RL I+NL FK +E++ K F Q+G +++ + + DGK++G GF+ + N + A KA
Sbjct: 147 KARLIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGKMRGFGFVQFKNLLEAGKA 204
>DICTYBASE|DDB_G0270634 [details] [associations]
symbol:DDB_G0270634 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270634 EMBL:AAFI02000005 GO:GO:0045335
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
RefSeq:XP_646268.1 ProteinModelPortal:Q55D63
EnsemblProtists:DDB0233675 GeneID:8617224 KEGG:ddi:DDB_G0270634
InParanoid:Q55D63 OMA:CAFITFS ProtClustDB:CLSZ2497105
Uniprot:Q55D63
Length = 368
Score = 121 (47.7 bits), Expect = 0.00017, P = 0.00017
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKS 93
LFI LPF +EE K+ F YG++I +++ + + + C GF++Y N SA+ AI +
Sbjct: 289 LFIYYLPFTYGDEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQEL 348
Query: 94 NKKPYKGKITEEEFK 108
N + +GK + FK
Sbjct: 349 NGRAIEGKKLKVNFK 363
Score = 94 (38.1 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKS 93
+F+ ++P + EE + F ++G+I+D ++K+ + KGC FI ++ K A A+ +
Sbjct: 20 VFVGHIPSSMNEEGVSQIFNKFGNILDITIIKDKRTNVSKGCAFITFSTKEEADNALNTT 79
Query: 94 NK 95
N+
Sbjct: 80 NE 81
Score = 91 (37.1 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 22/63 (34%), Positives = 35/63 (55%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
+LFI L E++ + FG YG I D +++ DGK KG GFI Y+ + + A+ +
Sbjct: 108 KLFIGMLGTS-DEDQIRILFGNYGIIEDLNIVREKDGKPKGYGFIKYSTRDESENALREI 166
Query: 94 NKK 96
+ K
Sbjct: 167 DGK 169
Score = 88 (36.0 bits), Expect = 2.3e-06, Sum P(2) = 2.3e-06
Identities = 18/58 (31%), Positives = 35/58 (60%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKSNKKPYKGSE 160
+EE K+ F YG++I +++ + + + C GF++Y N SA+ AI + N + +G +
Sbjct: 300 DEELKQLFAPYGNVISSKVFIDKNTQQSKCFGFVSYDNTQSAIAAIQELNGRAIEGKK 357
>UNIPROTKB|F1MY44 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0042382 "paraspeckles" evidence=IEA] [GO:0019904 "protein
domain specific binding" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 GO:GO:0000380 GO:GO:0042382
GeneTree:ENSGT00410000025635 CTD:4670 KO:K12887 OMA:PGIERMA
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:DAAA02019521 EMBL:DAAA02019520 IPI:IPI00826962
RefSeq:NP_001178152.1 UniGene:Bt.48882 PRIDE:F1MY44
Ensembl:ENSBTAT00000011559 GeneID:515290 KEGG:bta:515290
NextBio:20871749 ArrayExpress:F1MY44 Uniprot:F1MY44
Length = 730
Score = 108 (43.1 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL +K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 206 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 265
Score = 102 (41.0 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R FI N+PF + + K+ + G++ +LL +A+GK +GC + + + S KA
Sbjct: 70 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAA 129
Query: 91 LKSNKKPYKG---KITEEEFKEH 110
NK G K+ E+ EH
Sbjct: 130 EVLNKHSLSGRPLKVKEDPDGEH 152
Score = 87 (35.7 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 214 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 265
Score = 68 (29.0 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
T + K+ F + G ++ A + K +GK KGCG + + + A +A N G E
Sbjct: 665 TWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 721
>UNIPROTKB|P52272 [details] [associations]
symbol:HNRNPM "Heterogeneous nuclear ribonucleoprotein M"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IPI] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0005887 "integral to plasma membrane"
evidence=TAS] [GO:0005681 "spliceosomal complex" evidence=IDA]
[GO:0003723 "RNA binding" evidence=NAS] [GO:0005654 "nucleoplasm"
evidence=IDA;TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] [GO:0016363 "nuclear matrix" evidence=IDA]
[GO:0042382 "paraspeckles" evidence=IDA] [GO:0000380 "alternative
mRNA splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005887 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724
GO:GO:0000380 GO:GO:0042382 EMBL:L03532 EMBL:L32611 EMBL:AF061832
EMBL:BC000138 EMBL:BC008895 EMBL:BC019580 IPI:IPI00171903
IPI:IPI00383296 PIR:S35532 RefSeq:NP_005959.2 RefSeq:NP_112480.2
UniGene:Hs.465808 UniGene:Hs.666214 PDB:2DGV PDB:2DH9 PDB:2DO0
PDB:2OT8 PDBsum:2DGV PDBsum:2DH9 PDBsum:2DO0 PDBsum:2OT8
ProteinModelPortal:P52272 SMR:P52272 DIP:DIP-29336N IntAct:P52272
MINT:MINT-4999200 STRING:P52272 PhosphoSite:P52272 DMDM:55977747
REPRODUCTION-2DPAGE:IPI00383296 UCD-2DPAGE:P52272 PaxDb:P52272
PRIDE:P52272 Ensembl:ENST00000325495 Ensembl:ENST00000348943
GeneID:4670 KEGG:hsa:4670 UCSC:uc010dwd.3 UCSC:uc010dwe.3 CTD:4670
GeneCards:GC19P008509 H-InvDB:HIX0137462 HGNC:HGNC:5046
HPA:CAB016113 HPA:HPA024344 MIM:160994 neXtProt:NX_P52272
PharmGKB:PA29370 HOGENOM:HOG000231932 HOVERGEN:HBG054880
InParanoid:P52272 KO:K12887 OMA:PGIERMA OrthoDB:EOG4RBQJN
PhylomeDB:P52272 ChiTaRS:HNRNPM EvolutionaryTrace:P52272
GenomeRNAi:4670 NextBio:17994 ArrayExpress:P52272 Bgee:P52272
CleanEx:HS_HNRNPM Genevestigator:P52272 GermOnline:ENSG00000099783
InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
Uniprot:P52272
Length = 730
Score = 108 (43.1 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL +K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 206 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 265
Score = 102 (41.0 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R FI N+PF + + K+ + G++ +LL +A+GK +GC + + + S KA
Sbjct: 70 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAA 129
Query: 91 LKSNKKPYKG---KITEEEFKEH 110
NK G K+ E+ EH
Sbjct: 130 EVLNKHSLSGRPLKVKEDPDGEH 152
Score = 87 (35.7 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 214 KVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 265
Score = 68 (29.0 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
T + K+ F + G ++ A + K +GK KGCG + + + A +A N G E
Sbjct: 665 TWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 721
>UNIPROTKB|D4ACJ8 [details] [associations]
symbol:Hnrnpa1 "Heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 IPI:IPI00780243 Ensembl:ENSRNOT00000055282
ArrayExpress:D4ACJ8 Uniprot:D4ACJ8
Length = 268
Score = 112 (44.5 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>RGD|1565016 [details] [associations]
symbol:Celf5 "CUGBP, Elav-like family member 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565016 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13207 GeneTree:ENSGT00560000076837 OrthoDB:EOG4RJG30 CTD:60680
IPI:IPI00914219 RefSeq:NP_001129075.1 UniGene:Rn.12319
ProteinModelPortal:D4A8V0 Ensembl:ENSRNOT00000061219 GeneID:314647
KEGG:rno:314647 UCSC:RGD:1565016 NextBio:668034 Uniprot:D4A8V0
Length = 395
Score = 100 (40.3 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F Q+G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 8 KLFVGQIPRHLHEQDLKPLFEQFGRIYELTVLKDPHTGVHKGCAFLTYCARDSAIKA 64
Score = 82 (33.9 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 19/68 (27%), Positives = 33/68 (48%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
+EE+ F +G I + +L+ DG KGC F+ +++ A AI + G+ +
Sbjct: 108 SEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 167
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 168 SLVVKFAD 175
>UNIPROTKB|F1PIN4 [details] [associations]
symbol:MYEF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00410000025635 EMBL:AAEX03016110
Ensembl:ENSCAFT00000022252 Uniprot:F1PIN4
Length = 437
Score = 118 (46.6 bits), Expect = 0.00048, P = 0.00048
Identities = 23/56 (41%), Positives = 38/56 (67%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
++F++NLPF +T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA
Sbjct: 361 QIFVRNLPFDLTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKA 415
Score = 98 (39.6 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL FK+ ++ KE F G + A + ++ DGK +G G + + I AV+AI N
Sbjct: 75 IFVANLDFKVGWKKLKEVFSIAGTVKRADIKEDKDGKSRGMGTVTFEQAIEAVQAISMFN 134
Score = 84 (34.6 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 21/59 (35%), Positives = 32/59 (54%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
+T ++ KE F Q G ++ A++ K +GK KGCG + + + SA KA N G E
Sbjct: 371 LTWQKLKEKFSQCGHVMFAEI-KMENGKSKGCGTVRFDSPESAEKACRIMNGIKISGRE 428
>UNIPROTKB|H0YIB4 [details] [associations]
symbol:SRSF9 "Serine/arginine-rich-splicing factor 9"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL021546 HGNC:HGNC:10791 Ensembl:ENST00000550458
Uniprot:H0YIB4
Length = 110
Score = 115 (45.5 bits), Expect = 3.6e-06, P = 3.6e-06
Identities = 34/118 (28%), Positives = 58/118 (49%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
GR+++ NLP + E++ ++ F +YG I + +L KN G L F+ + + A AI
Sbjct: 2 GRIYVGNLPTDVREKDLEDLFYKYGRIREIEL-KNRHG-LVPFAFVRFEDPRDAEDAIYG 59
Query: 93 SNKKPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 150
N P G + ++ K+H + GD+ A + K+ G G + Y K A+ K
Sbjct: 60 RNGLPPSG--SWQDLKDHMREAGDVCYADVQKD------GVGMVEYLRKEDMEYALRK 109
>UNIPROTKB|Q5ZL80 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000380 "alternative
mRNA splicing, via spliceosome" evidence=IEA] [GO:0016363 "nuclear
matrix" evidence=IEA] [GO:0019904 "protein domain specific binding"
evidence=IEA] [GO:0042382 "paraspeckles" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0016363 GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380
GO:GO:0042382 GeneTree:ENSGT00410000025635 CTD:4670
HOGENOM:HOG000231932 HOVERGEN:HBG054880 KO:K12887 OMA:PGIERMA
OrthoDB:EOG4RBQJN InterPro:IPR024666 PANTHER:PTHR23003:SF6
Pfam:PF11532 EMBL:AADN02063494 EMBL:AADN02063495 EMBL:AADN02063496
EMBL:AJ719854 IPI:IPI00594541 RefSeq:NP_001026103.1
UniGene:Gga.13144 SMR:Q5ZL80 STRING:Q5ZL80
Ensembl:ENSGALT00000000510 GeneID:420054 KEGG:gga:420054
InParanoid:Q5ZL80 NextBio:20823019 Uniprot:Q5ZL80
Length = 709
Score = 109 (43.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 25/78 (32%), Positives = 42/78 (53%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL +K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 212 VFVANLDYKVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAISMFN 271
Query: 95 -----KKPYKGKITEEEF 107
+P K+ E F
Sbjct: 272 GQLLFDRPMHVKMDERAF 289
Score = 100 (40.3 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 26/83 (31%), Positives = 42/83 (50%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R FI N+PF + + K+ + G++ +LL +A+GK +GC + + + S KA
Sbjct: 75 RYRAFITNIPFDVKWQSLKDLVKEKVGEVTYVELLMDAEGKSRGCAVVEFKMEESMKKAA 134
Query: 91 LKSNKKPYKG---KITEEEFKEH 110
NK G K+ E+ EH
Sbjct: 135 EVLNKHSLGGRPLKVKEDPDGEH 157
Score = 87 (35.7 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 220 KVGWKKLKEVFSMAGAVVRADILEDKDGKSRGIGTVTFEQAIEAVQAISMFN 271
Score = 68 (29.0 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
T + K+ F + G ++ A + K +GK KGCG + + + A +A N +G E
Sbjct: 644 TWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVRFESPEVAERACRMMNGIQLRGRE 700
>TAIR|locus:504955752 [details] [associations]
symbol:AT3G13224 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000234441 HSSP:Q14103
KO:K12741 OMA:HAINGHH EMBL:AP002042 EMBL:AY080630 EMBL:AY123003
EMBL:AK221448 IPI:IPI00534312 RefSeq:NP_683559.2 UniGene:At.27259
ProteinModelPortal:Q9LHL2 SMR:Q9LHL2 IntAct:Q9LHL2 PRIDE:Q9LHL2
EnsemblPlants:AT3G13224.2 GeneID:820515 KEGG:ath:AT3G13224
TAIR:At3g13224 InParanoid:Q9LHL2 PhylomeDB:Q9LHL2
ProtClustDB:CLSN2918087 Genevestigator:Q9LHL2 Uniprot:Q9LHL2
Length = 358
Score = 100 (40.3 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 21/61 (34%), Positives = 38/61 (62%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAIL 91
G++FI L T F +HFG+YG+I D+ ++++ G+ +G GFI +A+ S V ++
Sbjct: 19 GKIFIGGLHKDTTNTVFNKHFGKYGEITDSVIMRDRHTGQPRGFGFITFADP-SVVDKVI 77
Query: 92 K 92
+
Sbjct: 78 E 78
Score = 79 (32.9 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 13/52 (25%), Positives = 34/52 (65%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSN 152
+TE+E K+ F +YG++++ Q++++ + + +G GF+ + ++ + + K N
Sbjct: 120 VTEDELKDFFAKYGNVVEHQVIRDHETNRSRGFGFVIFDSEEVVDELLSKGN 171
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 95 (38.5 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 18/61 (29%), Positives = 39/61 (63%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADG-KLKGCGFINYANKISAVKAILKS 93
+F+ +L ++ ++ +E F +GD+ DA+++++ + K KG GF++Y + A +AI +
Sbjct: 137 VFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEAERAIEQM 196
Query: 94 N 94
N
Sbjct: 197 N 197
Score = 86 (35.3 bits), Expect = 3.9e-06, Sum P(2) = 3.9e-06
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 94 NKKPYKGKI---TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 150
N Y G I TE+E ++ F +G I + ++ K ++G F+ + NK +A KAI++
Sbjct: 240 NTSVYVGNIASLTEDEIRQGFASFGRITEVRIFK-----MQGYAFVKFDNKDAAAKAIVQ 294
Query: 151 SNKKPYKG 158
N + G
Sbjct: 295 MNNQDVGG 302
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 106 (42.4 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LFI +P + E++ K F QYG I + ++K+ G KGC F+ Y + SA+KA
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQYGKIYELTVIKDKYTGMHKGCAFLTYCARESAIKA 64
Score = 75 (31.5 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 18/69 (26%), Positives = 35/69 (50%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLK-GCGFINYANKISAVKAILKSN-KKPYKGSE 160
++E+ ++ F +G I + +L+ DG K GC F+ + + A AI + + G+
Sbjct: 107 SDEDVRKIFEPFGGIDECTVLRGPDGTSKAGCAFVKFQSHSEAQSAINSLHGSRTLPGAS 166
Query: 161 NGLISPFHD 169
+ L+ F D
Sbjct: 167 SSLVVKFAD 175
Score = 64 (27.6 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 16/53 (30%), Positives = 29/53 (54%)
Query: 101 KITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKSN 152
+ T+ E + F +G++I A++ + A + K GF+++ N SA AI N
Sbjct: 367 EFTDSEMLQMFLPFGNVISAKVFVDRATNQSKCFGFVSFDNPASAQTAIQAMN 419
>SGD|S000005964 [details] [associations]
symbol:NOP4 "Nucleolar protein" species:4932 "Saccharomyces
cerevisiae" [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA;TAS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000005964 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BK006949
GO:GO:0006364 EMBL:U44030 EMBL:U02598 EMBL:X76245 PIR:S46365
RefSeq:NP_015282.1 ProteinModelPortal:P37838 SMR:P37838
DIP:DIP-3891N IntAct:P37838 MINT:MINT-559282 STRING:P37838
PaxDb:P37838 PeptideAtlas:P37838 EnsemblFungi:YPL043W GeneID:856063
KEGG:sce:YPL043W CYGD:YPL043w eggNOG:NOG323727
GeneTree:ENSGT00550000074976 HOGENOM:HOG000187841 KO:K14573
OMA:SSHRWAL OrthoDB:EOG4K6KCP NextBio:981044 Genevestigator:P37838
GermOnline:YPL043W Uniprot:P37838
Length = 685
Score = 104 (41.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 18/68 (26%), Positives = 41/68 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
LF++++P +T+E+ + F + I A ++K+ + + +G GF+++A + +A+ K+
Sbjct: 28 LFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNKRSRGFGFVSFAVEDDTKEALAKAR 87
Query: 95 KKPYKGKI 102
K + G I
Sbjct: 88 KTKFNGHI 95
Score = 82 (33.9 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 106 EFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153
+ K+ FG+YG +++A + + DGKL G F+ KIS + L++ K
Sbjct: 163 KLKKIFGRYGTVVEATIPRKRDGKLCGFAFVTM-KKISNCRIALENTK 209
Score = 60 (26.2 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 19/69 (27%), Positives = 33/69 (47%)
Query: 97 PYKGKITEEEFKEHFGQYGDIIDA-QLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
PY TEE HF ++G + A ++ + G KG F+ + ++ + + I + P
Sbjct: 298 PYDA--TEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYTYNECIKNA---P 352
Query: 156 YKGSENGLI 164
GS + LI
Sbjct: 353 AAGSTSLLI 361
>UNIPROTKB|F8VXY0 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022801 ProteinModelPortal:F8VXY0 SMR:F8VXY0 PRIDE:F8VXY0
Ensembl:ENST00000547617 ArrayExpress:F8VXY0 Bgee:F8VXY0
Uniprot:F8VXY0
Length = 304
Score = 112 (44.5 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>UNIPROTKB|F8VSB5 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01022218 ProteinModelPortal:F8VSB5 SMR:F8VSB5 PRIDE:F8VSB5
Ensembl:ENST00000552494 ArrayExpress:F8VSB5 Bgee:F8VSB5
Uniprot:F8VSB5
Length = 306
Score = 112 (44.5 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 4.3e-06, Sum P(2) = 4.3e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>UNIPROTKB|F8VRQ1 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021093 ProteinModelPortal:F8VRQ1 SMR:F8VRQ1 PRIDE:F8VRQ1
Ensembl:ENST00000551133 ArrayExpress:F8VRQ1 Bgee:F8VRQ1
Uniprot:F8VRQ1
Length = 307
Score = 112 (44.5 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 111 (44.1 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 18/68 (26%), Positives = 40/68 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+++KNLP + E+ ++ F Q+G ++ +++++ G + GF+N+ A KA++ N
Sbjct: 193 IYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVHMN 252
Query: 95 KKPYKGKI 102
K G++
Sbjct: 253 GKEVSGRL 260
Score = 73 (30.8 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
I +++ ++ F YG I A+++ G KG GF+ +++ A KA+ + N
Sbjct: 305 IDDDKLRKEFSPYGVITSAKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMN 354
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 100 (40.3 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 23/69 (33%), Positives = 37/69 (53%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ ++ + DG KG GF+++ + +A AI K
Sbjct: 120 GNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQK 179
Query: 93 SNKKPYKGK 101
N GK
Sbjct: 180 VNGMLLAGK 188
Score = 85 (35.0 bits), Expect = 4.7e-06, Sum P(2) = 4.7e-06
Identities = 15/53 (28%), Positives = 30/53 (56%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 154
+ ++ K+ F YG+I A+++ + +G+ KG GF+ + A A+ + N K
Sbjct: 328 VDDDGLKKQFESYGNITSAKVMTDENGRSKGFGFVCFEKPEEATSAVTEMNSK 380
Score = 81 (33.6 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 16/56 (28%), Positives = 32/56 (57%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+++KN +E ++ F ++G+I +++ +GK KG GF+ +AN A A+
Sbjct: 215 VYVKNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAV 269
Score = 74 (31.1 bits), Expect = 6.2e-05, Sum P(2) = 6.2e-05
Identities = 16/65 (24%), Positives = 34/65 (52%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + +E ++ F ++G+I +++ +GK KG GF+ +AN A A+ +
Sbjct: 218 KNFGDHYNKETLEKLFAKFGNITSCEVM-TVEGKSKGFGFVAFANPEEAETAVQALHDST 276
Query: 156 YKGSE 160
+G++
Sbjct: 277 IEGTD 281
>UNIPROTKB|D6RAD3 [details] [associations]
symbol:PPA2 "Inorganic pyrophosphatase 2, mitochondrial"
species:9606 "Homo sapiens" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006796
"phosphate-containing compound metabolic process" evidence=IEA]
InterPro:IPR008162 GO:GO:0005737 GO:GO:0000287 GO:GO:0006796
GO:GO:0004427 Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
EMBL:AC004066 EMBL:AC106888 HGNC:HGNC:28883 ChiTaRS:PPA2
IPI:IPI00966339 ProteinModelPortal:D6RAD3 SMR:D6RAD3
Ensembl:ENST00000513649 ArrayExpress:D6RAD3 Bgee:D6RAD3
Uniprot:D6RAD3
Length = 113
Score = 114 (45.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 27/57 (47%), Positives = 33/57 (57%)
Query: 156 YKGSENGLISPFHDIPLYSNVKDK---------------IFNMVVEIPRWTNAKMEI 197
+K ISPFHDIPL N K++ +FNM+VEIPRWTNAKME+
Sbjct: 52 FKNVTGHYISPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEV 108
Score = 113 (44.8 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 27/49 (55%), Positives = 31/49 (63%)
Query: 385 ISPFHDIPLYSNVKDK---------------IFNMVVEIPRWTNAKMEV 418
ISPFHDIPL N K++ +FNM+VEIPRWTNAKMEV
Sbjct: 60 ISPFHDIPLKVNSKEENGIPMKKARNDEYENLFNMIVEIPRWTNAKMEV 108
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 114 (45.2 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 24/58 (41%), Positives = 39/58 (67%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 91
+F+ +L +IT E+ K F +G I DA+++K+ A GK KG GF+++ NK+ A AI+
Sbjct: 60 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 117
Score = 108 (43.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 27/77 (35%), Positives = 45/77 (58%)
Query: 78 INYANKISAVKAILKSNKKPYKG----KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKG 132
+N+A S+ K ++ + G +IT E+ K F +G I DA+++K+ A GK KG
Sbjct: 41 VNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKG 100
Query: 133 CGFINYANKISAVKAIL 149
GF+++ NK+ A AI+
Sbjct: 101 YGFVSFYNKLDAENAIV 117
>ZFIN|ZDB-GENE-051120-114 [details] [associations]
symbol:myef2 "myelin expression factor 2"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-051120-114 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000231932 HOVERGEN:HBG054880 CTD:50804
OrthoDB:EOG4VDPZN EMBL:BC108001 IPI:IPI00656464
RefSeq:NP_001032500.1 UniGene:Dr.77011 ProteinModelPortal:Q32PS6
SMR:Q32PS6 PRIDE:Q32PS6 GeneID:641483 KEGG:dre:641483
NextBio:20901587 ArrayExpress:Q32PS6 Bgee:Q32PS6 Uniprot:Q32PS6
Length = 557
Score = 104 (41.7 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 21/60 (35%), Positives = 35/60 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL FK+ ++ KE FG G + A + ++ DGK +G G + + + AV+AI N
Sbjct: 214 IFVANLDFKVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFN 273
Score = 100 (40.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 24/83 (28%), Positives = 43/83 (51%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R R+FI N+P+ + K+ + G++ +L K+ +GK +GCG + + ++ KAI
Sbjct: 80 RNRVFISNIPYDKKWQAIKDLMREKVGEVTYVELFKDGEGKSRGCGVVEFKDEEFVKKAI 139
Query: 91 LKSNKKPYKGK---ITEEEFKEH 110
+K G+ I E+ EH
Sbjct: 140 EVMSKHDLNGRPLNIKEDPDGEH 162
Score = 79 (32.9 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 105 EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
++ KE F G ++ A++ K +GK KGCG + + + SA KA N G E
Sbjct: 494 QKLKEKFSHCGQVMYAEI-KMENGKSKGCGTVRFDSPESAEKACRLMNGTKINGRE 548
Score = 79 (32.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
K+ ++ KE FG G + A + ++ DGK +G G + + + AV+AI N
Sbjct: 222 KVGWKKLKEVFGMAGTVRRADVKEDKDGKSRGMGTVTFEQPLEAVQAISMFN 273
>UNIPROTKB|D6RF44 [details] [associations]
symbol:HNRNPD "Heterogeneous nuclear ribonucleoprotein D0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0043488 "regulation of mRNA stability" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048255 HOGENOM:HOG000234441 EMBL:AC124016
HGNC:HGNC:5036 ChiTaRS:HNRNPD IPI:IPI00967562
ProteinModelPortal:D6RF44 SMR:D6RF44 Ensembl:ENST00000515432
ArrayExpress:D6RF44 Bgee:D6RF44 Uniprot:D6RF44
Length = 112
Score = 90 (36.7 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 18/71 (25%), Positives = 39/71 (54%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKS 93
+FI L + T+++ K++F ++G+++D L L G+ +G GF+ + S K ++
Sbjct: 1 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDK-VMDQ 59
Query: 94 NKKPYKGKITE 104
+ GK+ +
Sbjct: 60 KEHKLNGKVID 70
Score = 44 (20.5 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 104 EEEFKEHFGQYGDI 117
EE+ +E+FG +G++
Sbjct: 97 EEKIREYFGGFGEV 110
>UNIPROTKB|P09867 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9913 "Bos taurus" [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GO:GO:0051028 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 EMBL:BC105413 IPI:IPI00692235 PIR:A27241
RefSeq:NP_001039376.1 UniGene:Bt.88002 ProteinModelPortal:P09867
SMR:P09867 STRING:P09867 PRIDE:P09867 Ensembl:ENSBTAT00000002033
GeneID:505093 KEGG:bta:505093 CTD:3178 GeneTree:ENSGT00550000074566
OMA:IEVEIMT BindingDB:P09867 NextBio:20866978 Uniprot:P09867
Length = 320
Score = 112 (44.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>UNIPROTKB|F8W6I7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021324 ProteinModelPortal:F8W6I7 SMR:F8W6I7 PRIDE:F8W6I7
Ensembl:ENST00000330752 ArrayExpress:F8W6I7 Bgee:F8W6I7
Uniprot:F8W6I7
Length = 320
Score = 112 (44.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>UNIPROTKB|Q06A94 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 OMA:IEVEIMT
EMBL:CU694683 EMBL:DQ972970 RefSeq:NP_001070686.1 UniGene:Ssc.49600
SMR:Q06A94 Ensembl:ENSSSCT00000000309 GeneID:768103 KEGG:ssc:768103
Uniprot:Q06A94
Length = 320
Score = 112 (44.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>UNIPROTKB|A5A6H4 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9598 "Pan troglodytes" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
GeneTree:ENSGT00550000074566 OMA:IEVEIMT EMBL:AB222102
EMBL:AL954201 RefSeq:NP_001091892.1 RefSeq:NP_001184040.1
RefSeq:XP_003318234.1 RefSeq:XP_003954396.1 UniGene:Ptr.6288
UniGene:Ptr.6435 ProteinModelPortal:A5A6H4 SMR:A5A6H4 PRIDE:A5A6H4
Ensembl:ENSPTRT00000010845 GeneID:100615525 GeneID:739306
GeneID:747284 KEGG:ptr:100615525 KEGG:ptr:739306 KEGG:ptr:747284
CTD:739306 InParanoid:A5A6H4 BindingDB:A5A6H4 NextBio:20906554
Uniprot:A5A6H4
Length = 320
Score = 112 (44.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>UNIPROTKB|Q28521 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9544 "Macaca mulatta" [GO:0030529 "ribonucleoprotein
complex" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0030529 GO:GO:0051028
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF InterPro:IPR021662 Pfam:PF11627 CTD:3178
EMBL:M84334 PIR:S30192 RefSeq:NP_001036248.1 UniGene:Mmu.4980
ProteinModelPortal:Q28521 SMR:Q28521 STRING:Q28521 PRIDE:Q28521
GeneID:702977 KEGG:mcc:702977 InParanoid:Q28521 NextBio:19966247
Uniprot:Q28521
Length = 320
Score = 112 (44.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEKVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHNSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>MGI|MGI:104820 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0051168 "nuclear export" evidence=ISO] [GO:0051170 "nuclear
import" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:104820 GO:GO:0005737
GO:GO:0005654 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0051028 GO:GO:0051168
eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 OrthoDB:EOG4HQDKF InterPro:IPR021662
Pfam:PF11627 CTD:3178 GeneTree:ENSGT00550000074566 ChiTaRS:HNRNPA1
EMBL:M99167 EMBL:D86729 EMBL:D86728 EMBL:AK007802 EMBL:AK088308
EMBL:AK131999 EMBL:AK135391 EMBL:AK161730 EMBL:AK166901
EMBL:AK167161 EMBL:AK167810 EMBL:AK167913 EMBL:AK168420
EMBL:AK168531 EMBL:BC080675 EMBL:BC083136 IPI:IPI00553777
IPI:IPI00817004 PIR:A44485 RefSeq:NP_034577.1 UniGene:Mm.237064
UniGene:Mm.432031 ProteinModelPortal:P49312 SMR:P49312
IntAct:P49312 STRING:P49312 PhosphoSite:P49312 PaxDb:P49312
PRIDE:P49312 Ensembl:ENSMUST00000087351 GeneID:15382 KEGG:mmu:15382
UCSC:uc007xxp.1 UCSC:uc012aah.1 BindingDB:P49312 NextBio:288050
Bgee:P49312 CleanEx:MM_HNRNPA1 Genevestigator:P49312
GermOnline:ENSMUSG00000058922 Uniprot:P49312
Length = 320
Score = 112 (44.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>RGD|69234 [details] [associations]
symbol:Hnrnpa1 "heterogeneous nuclear ribonucleoprotein A1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003697 "single-stranded DNA binding"
evidence=ISO;ISS;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005654 "nucleoplasm"
evidence=ISO;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISO;ISS] [GO:0005730 "nucleolus" evidence=ISO] [GO:0005737
"cytoplasm" evidence=ISO;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA;ISO]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0030529
"ribonucleoprotein complex" evidence=ISO;ISS] [GO:0045111
"intermediate filament cytoskeleton" evidence=ISO] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0051168 "nuclear export"
evidence=ISO;ISS] [GO:0051170 "nuclear import" evidence=ISO;ISS]
[GO:0071013 "catalytic step 2 spliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 GO:GO:0016070 GO:GO:0051028
GO:GO:0051168 eggNOG:COG0724 HOVERGEN:HBG002295 GO:GO:0051170
HOGENOM:HOG000234442 KO:K12741 InterPro:IPR021662 Pfam:PF11627
CTD:3178 EMBL:M12156 IPI:IPI00421500 PIR:A38304 RefSeq:NP_058944.1
UniGene:Rn.25771 ProteinModelPortal:P04256 SMR:P04256 IntAct:P04256
STRING:P04256 PhosphoSite:P04256 PRIDE:P04256 GeneID:29578
KEGG:rno:29578 UCSC:RGD:69234 NextBio:609678 ArrayExpress:P04256
Genevestigator:P04256 GermOnline:ENSRNOG00000036839 Uniprot:P04256
Length = 320
Score = 112 (44.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>UNIPROTKB|Q5I0M7 [details] [associations]
symbol:Hnrnpa1 "Hnrpa1 protein" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH474035 eggNOG:COG0724 HOVERGEN:HBG002295 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 IPI:IPI00421500
UniGene:Rn.25771 EMBL:BC088150 SMR:Q5I0M7 STRING:Q5I0M7
Ensembl:ENSRNOT00000055285 Genevestigator:Q5I0M7 Uniprot:Q5I0M7
Length = 320
Score = 112 (44.5 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>POMBASE|SPAC328.05 [details] [associations]
symbol:SPAC328.05 "RNA-binding protein involved in export
of mRNAs (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0016973 "poly(A)+ mRNA export from
nucleus" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 PomBase:SPAC328.05
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0016973
OrthoDB:EOG4F21C2 RefSeq:NP_594207.3 HSSP:Q9D0B0
EnsemblFungi:SPAC328.05.1 GeneID:2542567 NextBio:20803618
Uniprot:Q9P3U1
Length = 464
Score = 112 (44.5 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
R+++ NL +++ E KE GQ G++++ ++L +G KGC I Y+ A AI
Sbjct: 78 RVYVGNLSYQVRWFELKEFMGQVGNVLNCEILNLPNGLSKGCAIIEYSTAEEARTAIKTL 137
Query: 94 NKKPYKGKITE-EEFKEHFGQYG 115
+ + + G++ E +E ++G
Sbjct: 138 SNQKFMGRLVYIREDREQNARFG 160
Score = 104 (41.7 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 22/80 (27%), Positives = 42/80 (52%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
+LF+ NLP+ + ++ K+ F Q G +I A + N +G+ +G G + ++ A+ AI
Sbjct: 180 QLFVGNLPYNVRWQDLKDLFRQAGSVIRADIQMNQEGRSRGIGIVVMSSMKEAMHAIQML 239
Query: 94 NKKPYKGKITE---EEFKEH 110
+ + G+ E + F H
Sbjct: 240 HNTDFMGRTLEVRLDRFAHH 259
Score = 68 (29.0 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 29/114 (25%), Positives = 45/114 (39%)
Query: 111 FGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSENGLISPFHDI 170
F G +I A++ G+ KG G + + N+ A +I K N Y G L +
Sbjct: 330 FTDIGSVIRARIAYEPTGRSKGFGVVQFENENDAASSIEKLNGYRYGGRPLQLSYAHYAT 389
Query: 171 PLYSNVKDKIFNMVVEIPRWTNAKMEI-NLNEPLNPIKQDIKKGNLRYVANVFP 223
PL + + + + + +T M I N PL P Q L Y+ P
Sbjct: 390 PLPA--VPTVLSGLPSVA-YTPPVMHIPTTNSPLTP--QSFTNSFLGYLPISMP 438
>UNIPROTKB|F8W1S7 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0045111
"intermediate filament cytoskeleton" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0045111 InterPro:IPR021662
Pfam:PF11627 EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
IPI:IPI01021812 ProteinModelPortal:F8W1S7 SMR:F8W1S7 PRIDE:F8W1S7
Ensembl:ENST00000552591 ArrayExpress:F8W1S7 Bgee:F8W1S7
Uniprot:F8W1S7
Length = 330
Score = 112 (44.5 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 126 (49.4 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN ++ +E KE F Q+G + +++++ +GK KG GF++Y A KA+ + N
Sbjct: 106 VYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMN 165
Query: 95 KKPYKGKI 102
K GKI
Sbjct: 166 GKEISGKI 173
Score = 105 (42.0 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 20/63 (31%), Positives = 36/63 (57%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + ++ +E KE F Q+G + +++++ +GK KG GF++Y A KA+ + N K
Sbjct: 109 KNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEEMNGKE 168
Query: 156 YKG 158
G
Sbjct: 169 ISG 171
Score = 41 (19.5 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 73 KGCGFINYANKISAVKAILKSN 94
KG F+++ + +A KAI K N
Sbjct: 51 KGYAFVHFETQEAADKAIEKMN 72
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 109 (43.4 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN + +E K+ FG++G + +++ + GK KG GF+++ A KA+ + N
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 95 KKPYKGK 101
K GK
Sbjct: 253 GKELNGK 259
Score = 90 (36.7 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 22/77 (28%), Positives = 40/77 (51%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +F+KNL I + + +G+I+ ++ + +G KG GF+++ +A +AI K
Sbjct: 99 GNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGS-KGYGFVHFETHEAAERAIKK 157
Query: 93 SNKKPYKG-KITEEEFK 108
N G K+ +FK
Sbjct: 158 MNGMLLNGRKVFVGQFK 174
Score = 74 (31.1 bits), Expect = 6.2e-06, Sum P(2) = 6.2e-06
Identities = 15/51 (29%), Positives = 29/51 (56%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
I +E ++ F +G I A+++ G+ KG GF+ +++ A KA+ + N
Sbjct: 305 IDDERLRKAFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMN 354
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 112 (44.5 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 20/68 (29%), Positives = 39/68 (57%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN + ++ KE F +G+ + +++ + G+ +G GF+NY N A KA+ + N
Sbjct: 193 VYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTEMN 252
Query: 95 KKPYKGKI 102
K G++
Sbjct: 253 GKEVNGRM 260
Score = 70 (29.7 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
I ++ ++ F YG I +++ G KG GF+ +++ A KA+ + N
Sbjct: 305 IDDDRLRKEFSPYGTITSTKVMTEG-GHSKGFGFVCFSSPEEATKAVTEMN 354
>UNIPROTKB|Q1RMF9 [details] [associations]
symbol:DAZ1 "DAZ1 protein" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 RefSeq:NP_004072.3
UniGene:Hs.522868 UniGene:Hs.70936 GeneID:1617 KEGG:hsa:1617
CTD:1617 HGNC:HGNC:2682 PharmGKB:PA27149 HOVERGEN:HBG048860
GenomeRNAi:1617 NextBio:6642 EMBL:AC053490 EMBL:AC010088
EMBL:BC114927 IPI:IPI00942129 SMR:Q1RMF9 STRING:Q1RMF9
Ensembl:ENST00000382510 Uniprot:Q1RMF9
Length = 613
Score = 92 (37.4 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+F+ + ++ E E FG+YG + + +++ N G KG GF+++ N + K +
Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV 97
Score = 91 (37.1 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 51/232 (21%), Positives = 95/232 (40%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
++ E E FG+YG + + +++ N G KG GF+++ N + K + ++ + G +
Sbjct: 215 RMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKK 272
Query: 161 NGLISPFHDIPLYS-NVKDKIFNMVVEIPR-------WTNAKMEINLNEPL--NPIKQDI 210
L L + +V+ + +VV P W N E L + NP+ Q +
Sbjct: 273 LKLGPAIRKQKLCARHVQPR--PLVVNPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHV 330
Query: 211 KKGNLRYVAN--VFPHHGYIWNYGALPQTWENPD-ETDAHTGQKGDGDP-IDVLEIGERI 266
+ N + + A Q W P+ + +T G D +D EIG
Sbjct: 331 QSAANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCF 390
Query: 267 AKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPG 318
+ G + +VK + + +G + ++ VND + K + + HF G
Sbjct: 391 GRYGSVKEVKIITNRTGVSKG---YGFVSF-VNDVDVQK---IVGSQIHFHG 435
>UNIPROTKB|J3KQA8 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1
ProteinModelPortal:J3KQA8 Ensembl:ENST00000420780 Uniprot:J3KQA8
Length = 102
Score = 112 (44.5 bits), Expect = 7.7e-06, P = 7.7e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 112 (44.5 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 19/56 (33%), Positives = 40/56 (71%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
LFIK LP+ +T+++ ++ F +G II+ +++ + +G+ K GF+ +++++ A KAI
Sbjct: 199 LFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAI 254
Score = 98 (39.6 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 16/67 (23%), Positives = 40/67 (59%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+K+LP++ +E+ + F +YG ++ ++++ + G G GF+ +++ + AI + +
Sbjct: 111 VFVKHLPYEFNDEDLENLFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEELD 170
Query: 95 KKPYKGK 101
Y+ K
Sbjct: 171 GYQYQNK 177
Score = 88 (36.0 bits), Expect = 8.4e-06, Sum P(2) = 8.4e-06
Identities = 15/53 (28%), Positives = 35/53 (66%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 148
KP +T+++ ++ F +G II+ +++ + +G+ K GF+ +++++ A KAI
Sbjct: 202 KPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAI 254
Score = 54 (24.1 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 111 FGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSN 152
F Q+G + +++ + D G+ KG GF+ + A+K + N
Sbjct: 789 FSQFGKLQSVRVITDKDTGENKGYGFVKFYQTDEALKCQKEMN 831
>UNIPROTKB|P09651 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0051028 "mRNA transport" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0030529 "ribonucleoprotein
complex" evidence=IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006397 "mRNA processing" evidence=TAS] [GO:0003727
"single-stranded RNA binding" evidence=IC] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006405 "RNA export from nucleus" evidence=IC]
[GO:0051170 "nuclear import" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0051168 "nuclear
export" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0045111 "intermediate
filament cytoskeleton" evidence=IDA] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0019048 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 Reactome:REACT_1675 GO:GO:0003727
Gene3D:3.30.70.330 EMBL:CH471054 GO:GO:0045111 GO:GO:0003697
Pathway_Interaction_DB:ar_pathway GO:GO:0051028 GO:GO:0000398
GO:GO:0071013 eggNOG:COG0724 GO:GO:0000380 HOVERGEN:HBG002295
GO:GO:0051170 GO:GO:0006405 HOGENOM:HOG000234442 KO:K12741
OrthoDB:EOG4HQDKF CTD:3178 OMA:IEVEIMT EMBL:X12671 EMBL:X06747
EMBL:X79536 EMBL:AK291113 EMBL:AC078778 EMBL:BC002355 EMBL:BC009600
EMBL:BC012158 EMBL:BC033714 EMBL:BC052296 EMBL:BC070315
EMBL:BC074502 EMBL:BC103707 EMBL:X04347 IPI:IPI00215965
IPI:IPI00465365 IPI:IPI00797148 PIR:S02061 PIR:S12520
RefSeq:NP_002127.1 RefSeq:NP_112420.1 UniGene:Hs.546261
UniGene:Hs.655424 PDB:1HA1 PDB:1L3K PDB:1PGZ PDB:1PO6 PDB:1U1K
PDB:1U1L PDB:1U1M PDB:1U1N PDB:1U1O PDB:1U1P PDB:1U1Q PDB:1U1R
PDB:1UP1 PDB:2H4M PDB:2LYV PDB:2UP1 PDBsum:1HA1 PDBsum:1L3K
PDBsum:1PGZ PDBsum:1PO6 PDBsum:1U1K PDBsum:1U1L PDBsum:1U1M
PDBsum:1U1N PDBsum:1U1O PDBsum:1U1P PDBsum:1U1Q PDBsum:1U1R
PDBsum:1UP1 PDBsum:2H4M PDBsum:2LYV PDBsum:2UP1 DisProt:DP00324
ProteinModelPortal:P09651 SMR:P09651 DIP:DIP-29338N IntAct:P09651
MINT:MINT-1035550 STRING:P09651 PhosphoSite:P09651 DMDM:288558857
SWISS-2DPAGE:P09651 PaxDb:P09651 PRIDE:P09651
Ensembl:ENST00000340913 Ensembl:ENST00000546500
Ensembl:ENST00000547276 Ensembl:ENST00000547566 GeneID:3178
KEGG:hsa:3178 UCSC:uc001sfl.3 UCSC:uc001sfm.3 UCSC:uc001sfn.3
GeneCards:GC12P054674 H-InvDB:HIX0032087 H-InvDB:HIX0040127
H-InvDB:HIX0202582 HGNC:HGNC:5031 HPA:CAB010894 HPA:HPA001666
MIM:164017 neXtProt:NX_P09651 PharmGKB:PA162391113
InParanoid:P09651 PhylomeDB:P09651 BindingDB:P09651
ChEMBL:CHEMBL1955709 ChiTaRS:HNRNPA1 EvolutionaryTrace:P09651
GenomeRNAi:3178 NextBio:12614 ArrayExpress:P09651 Bgee:P09651
CleanEx:HS_HNRNPA1 Genevestigator:P09651 GermOnline:ENSG00000135486
Uniprot:P09651
Length = 372
Score = 112 (44.5 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>UNIPROTKB|E2QYP1 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
ProteinModelPortal:E2QYP1 PRIDE:E2QYP1 Ensembl:ENSCAFT00000010628
NextBio:20853043 Uniprot:E2QYP1
Length = 373
Score = 112 (44.5 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>UNIPROTKB|D4ACJ7 [details] [associations]
symbol:Hnrnpa1 "RCG50547, isoform CRA_b" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:69234 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013 GO:GO:0051168
EMBL:CH474035 GO:GO:0000380 GO:GO:0051170 OrthoDB:EOG4HQDKF
OMA:IEVEIMT IPI:IPI00781944 SMR:D4ACJ7 Ensembl:ENSRNOT00000055284
Uniprot:D4ACJ7
Length = 373
Score = 112 (44.5 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 100 (40.3 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 39/164 (23%), Positives = 75/164 (45%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + ++ +E F +G+ + +++ + G+ +G GF+NY N A KA+ + N K
Sbjct: 196 KNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNPIKQDIKKG 213
G + I S +K K + E I R+ + + NL++ ++ + ++K
Sbjct: 256 VNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDR--LRKE 313
Query: 214 NLRY----VANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
L Y A V G+ +G + + +P+E T A T G
Sbjct: 314 FLPYGTITSAKVMTEGGHSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 82 (33.9 bits), Expect = 8.9e-06, Sum P(2) = 8.9e-06
Identities = 23/89 (25%), Positives = 46/89 (51%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINY-----ANK-ISA 86
G +FIKNL I + + F +G+I+ +++ + G +G GF+++ AN+ I
Sbjct: 99 GNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETHEAANRAIQT 157
Query: 87 VKAILKSNKKPYKGKITEEEFKEHFGQYG 115
+ +L +++K + G +E +YG
Sbjct: 158 MNGMLLNDRKVFVGHFKSRREREL--EYG 184
>UNIPROTKB|F1Q3G7 [details] [associations]
symbol:HNRNPA1 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003697 GO:GO:0071013
GO:GO:0051168 GO:GO:0000380 GO:GO:0051170
GeneTree:ENSGT00550000074566 EMBL:AAEX03014967
Ensembl:ENSCAFT00000010627 OMA:QAQQGGW Uniprot:F1Q3G7
Length = 384
Score = 112 (44.5 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 36 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 93
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 94 -NARPHKVDGRVVE 106
Score = 63 (27.2 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 126 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 185
Query: 150 K 150
+
Sbjct: 186 Q 186
>UNIPROTKB|D4AD23 [details] [associations]
symbol:D4AD23 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OrthoDB:EOG4HQDKF
InterPro:IPR021662 Pfam:PF11627 IPI:IPI00390944
ProteinModelPortal:D4AD23 Ensembl:ENSRNOT00000039846 Uniprot:D4AD23
Length = 313
Score = 110 (43.8 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 22/72 (30%), Positives = 41/72 (56%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGALSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAMN 73
Query: 93 SNKKPYKGKITE 104
+ + G++ E
Sbjct: 74 ARPQKVNGRVVE 85
Score = 62 (26.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 95 KKPYKGKI---TEEEFKEHFGQYG--DIIDAQLLKNADGKLKGCGFINYANKISAVKAIL 149
KK + G I TE +++F QYG ++I+ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEHHLRDYFEQYGKTEVIEI-MTDRGRGKKRGFAFVTFDDHDSVDKIVI 163
Query: 150 K 150
+
Sbjct: 164 Q 164
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 119 (46.9 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 25/63 (39%), Positives = 35/63 (55%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
+LF+ LP ++E E + F +YG I D Q+L+ A KGC F+ Y K AV A+
Sbjct: 107 KLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESI 166
Query: 94 NKK 96
N K
Sbjct: 167 NGK 169
Score = 104 (41.7 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 25/69 (36%), Positives = 36/69 (52%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN-KKPYKGSE 160
++E E + F +YG I D Q+L+ A KGC F+ Y K AV A+ N K +GS
Sbjct: 117 VSEAEVQSLFSKYGTIKDLQILRGAQQTSKGCAFLKYETKEQAVSAMESINGKHKMEGST 176
Query: 161 NGLISPFHD 169
L+ + D
Sbjct: 177 VPLVVKWAD 185
Score = 57 (25.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 104 EEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
++E F +G ++ A++ + A G K GF++Y ++ +A AI N + G +
Sbjct: 362 DQELAAAFQSFGIVLSAKVFVDKATGVSKCFGFVSYDSQAAAQNAIDMMNGRHLGGKK 419
Score = 54 (24.1 bits), Expect = 0.00092, Sum P(2) = 0.00092
Identities = 15/69 (21%), Positives = 34/69 (49%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LF+ +P ++E + F ++ + + ++K+ + +GC F+ ++ A K +
Sbjct: 19 KLFVGQIPKHMSESQLLTLFQEFAVVDEVNIIKDKITRASRGCCFLLCPSREEADKLVNA 78
Query: 93 S-NKKPYKG 100
NKK G
Sbjct: 79 CHNKKTLPG 87
>TAIR|locus:2062379 [details] [associations]
symbol:AT2G35410 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0015979 "photosynthesis"
evidence=RCA] [GO:0015995 "chlorophyll biosynthetic process"
evidence=RCA] [GO:0019288 "isopentenyl diphosphate biosynthetic
process, mevalonate-independent pathway" evidence=RCA] [GO:0034660
"ncRNA metabolic process" evidence=RCA] [GO:0042793 "transcription
from plastid promoter" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009570 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0009579 EMBL:AC005314
UniGene:At.48551 eggNOG:COG0724 HSSP:P11940 EMBL:AY042799
EMBL:BT000365 IPI:IPI00522747 PIR:C84768 RefSeq:NP_181084.1
ProteinModelPortal:O82299 SMR:O82299 STRING:O82299 PaxDb:O82299
PRIDE:O82299 EnsemblPlants:AT2G35410.1 GeneID:818107
KEGG:ath:AT2G35410 TAIR:At2g35410 HOGENOM:HOG000240991
InParanoid:O82299 OMA:VSNLAWK PhylomeDB:O82299
ProtClustDB:CLSN2720628 ArrayExpress:O82299 Genevestigator:O82299
Uniprot:O82299
Length = 308
Score = 113 (44.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 24/78 (30%), Positives = 41/78 (52%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
+LF+ NLP+ ++ + E FGQ G + + ++++ DGK +G F+ A+ A AI K
Sbjct: 96 KLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDKF 155
Query: 94 NKKPYKGKITEEEFKEHF 111
+ G+I F F
Sbjct: 156 DTFQVSGRIISVSFARRF 173
Score = 58 (25.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 127 DGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+G+ G GF+++A + A AI K N K G
Sbjct: 232 EGRSSGYGFVSFATREEAENAITKLNGKEIMG 263
>UNIPROTKB|Q32P51 [details] [associations]
symbol:HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein
A1-like 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0000380 "alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 HSSP:Q61474
EMBL:CH471124 EMBL:AK123159 EMBL:AL137058 EMBL:BC108266
IPI:IPI00879501 RefSeq:NP_001011724.1 RefSeq:NP_001011725.1
UniGene:Hs.447506 ProteinModelPortal:Q32P51 SMR:Q32P51
IntAct:Q32P51 STRING:Q32P51 PhosphoSite:Q32P51 DMDM:190356061
PaxDb:Q32P51 PRIDE:Q32P51 Ensembl:ENST00000342657
Ensembl:ENST00000357495 Ensembl:ENST00000398039 GeneID:144983
KEGG:hsa:144983 UCSC:uc001vgx.1 CTD:144983 GeneCards:GC13P053192
HGNC:HGNC:27067 neXtProt:NX_Q32P51 PharmGKB:PA164720701
HOGENOM:HOG000234442 InParanoid:Q32P51 KO:K12741 OMA:HYGSIVD
OrthoDB:EOG4HQDKF GenomeRNAi:144983 NextBio:85023 Bgee:Q32P51
Genevestigator:Q32P51 InterPro:IPR021662 Pfam:PF11627
Uniprot:Q32P51
Length = 320
Score = 109 (43.4 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 22/72 (30%), Positives = 40/72 (55%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAMN 73
Query: 93 SNKKPYKGKITE 104
+ G++ E
Sbjct: 74 TTPHKVDGRVVE 85
Score = 63 (27.2 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +++F QYG I +++ + GK +G F+ + + S K ++
Sbjct: 105 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVI 164
Query: 150 K 150
+
Sbjct: 165 Q 165
>POMBASE|SPAC19G12.07c [details] [associations]
symbol:rsd1 "RNA-binding protein Rsd1 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0045292 "mRNA cis
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR006509 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC19G12.07c EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 eggNOG:COG0724 GO:GO:0045292
TIGRFAMs:TIGR01622 PIR:T37994 RefSeq:NP_594422.2
EnsemblFungi:SPAC19G12.07c.1 GeneID:2542545 HOGENOM:HOG000204008
OrthoDB:EOG4SR154 NextBio:20803597 Uniprot:O13845
Length = 603
Score = 91 (37.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 23/80 (28%), Positives = 42/80 (52%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAI 90
R +F+ L ++T E + F Q G + DAQ++++ G+ KG ++ + ++ S AI
Sbjct: 239 RRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAI 298
Query: 91 LKSNKK----PYKGKITEEE 106
S K+ P ++TE E
Sbjct: 299 ALSGKRLLGLPVIVQLTEAE 318
Score = 90 (36.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
+T+E+ K F +GDI L ++ + KG G+I Y N ISA A+ K N
Sbjct: 351 LTDEDVKAIFEPFGDIEFVHLQRDDQNRSKGFGYIQYRNPISARNALEKMN 401
>ZFIN|ZDB-GENE-030131-618 [details] [associations]
symbol:hnrnpa0l "heterogeneous nuclear
ribonucleoprotein A0, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030131-618
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
GeneTree:ENSGT00700000104255 HOGENOM:HOG000234442 EMBL:BX088707
EMBL:BC050513 IPI:IPI00489762 UniGene:Dr.75590 UniGene:Dr.79301
SMR:Q7ZU48 STRING:Q7ZU48 Ensembl:ENSDART00000052511
InParanoid:Q7ZU48 OMA:ICRRIAP Uniprot:Q7ZU48
Length = 302
Score = 90 (36.7 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 99 KGKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAIL 149
K I +E +++F Q+G I AQ++ + D GK +G GF+ + + SA KA++
Sbjct: 105 KDDIEDEHLQDYFSQFGPIEKAQVITDKDTGKKRGFGFVYFDDNDSADKAVV 156
Score = 83 (34.3 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 18/58 (31%), Positives = 31/58 (53%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAI 90
+LF+ L + T+E + HF QYG + D ++ N + C GF+ Y++ A A+
Sbjct: 7 KLFVGGLNVQTTDEGLRAHFEQYGQLTDCVVVMNQPLQRSRCFGFVTYSSTEEADAAM 64
>UNIPROTKB|Q9NQZ3 [details] [associations]
symbol:DAZ1 "Deleted in azoospermia protein 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0007275 "multicellular
organismal development" evidence=IEA] [GO:0007283 "spermatogenesis"
evidence=IEA] [GO:0030154 "cell differentiation" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008494 "translation activator activity"
evidence=IDA] [GO:0045948 "positive regulation of translational
initiation" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007275 GO:GO:0005634
GO:GO:0005737 GO:GO:0030154 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0008494 GO:GO:0045948
EMBL:AC006338 EMBL:AF271087 EMBL:AF271088 IPI:IPI00334616
RefSeq:NP_004072.3 UniGene:Hs.522868 UniGene:Hs.70936
ProteinModelPortal:Q9NQZ3 SMR:Q9NQZ3 IntAct:Q9NQZ3 MINT:MINT-254473
STRING:Q9NQZ3 PhosphoSite:Q9NQZ3 DMDM:44887841 PRIDE:Q9NQZ3
Ensembl:ENST00000405239 GeneID:1617 KEGG:hsa:1617 UCSC:uc004fvl.3
CTD:1617 GeneCards:GC0YM025275 HGNC:HGNC:2682 MIM:400003 MIM:415000
neXtProt:NX_Q9NQZ3 Orphanet:1646 PharmGKB:PA27149 eggNOG:KOG0118
HOGENOM:HOG000207950 HOVERGEN:HBG048860 InParanoid:Q9NQZ3
OMA:NYQAYSP GenomeRNAi:1617 NextBio:6642 ArrayExpress:Q9NQZ3
Bgee:Q9NQZ3 CleanEx:HS_DAZ1 Genevestigator:Q9NQZ3
GermOnline:ENSG00000188120 Uniprot:Q9NQZ3
Length = 744
Score = 92 (37.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
+F+ + ++ E E FG+YG + + +++ N G KG GF+++ N + K +
Sbjct: 42 VFVGGIDARMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV 97
Score = 91 (37.1 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 51/232 (21%), Positives = 95/232 (40%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
++ E E FG+YG + + +++ N G KG GF+++ N + K + ++ + G +
Sbjct: 215 RMDETEIGSCFGRYGSVKEVKIITNRTGVSKGYGFVSFVNDVDVQKIV--GSQIHFHGKK 272
Query: 161 NGLISPFHDIPLYS-NVKDKIFNMVVEIPR-------WTNAKMEINLNEPL--NPIKQDI 210
L L + +V+ + +VV P W N E L + NP+ Q +
Sbjct: 273 LKLGPAIRKQKLCARHVQPR--PLVVNPPPPPQFQNVWRNPNTETYLQPQITPNPVTQHV 330
Query: 211 KKGNLRYVAN--VFPHHGYIWNYGALPQTWENPD-ETDAHTGQKGDGDP-IDVLEIGERI 266
+ N + + A Q W P+ + +T G D +D EIG
Sbjct: 331 QSAANPETPNSTISREASTQSSSAAASQGWVLPEGKIVPNTVFVGGIDARMDETEIGSCF 390
Query: 267 AKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPG 318
+ G + +VK + + +G + ++ VND + K + + HF G
Sbjct: 391 GRYGSVKEVKIITNRTGVSKG---YGFVSF-VNDVDVQK---IVGSQIHFHG 435
>FB|FBgn0001215 [details] [associations]
symbol:Hrb98DE "Heterogeneous nuclear ribonucleoprotein at
98DE" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0003729
"mRNA binding" evidence=ISS;NAS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001745 "compound eye morphogenesis"
evidence=IGI] [GO:0043565 "sequence-specific DNA binding"
evidence=IDA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005703 "polytene chromosome
puff" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IMP] [GO:0005634 "nucleus" evidence=IDA]
[GO:0045727 "positive regulation of translation" evidence=IMP]
[GO:0048477 "oogenesis" evidence=IMP] [GO:0036099 "female germ-line
stem cell maintenance" evidence=IMP] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0005634 GO:GO:0000166 GO:GO:0043565 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0048027 GO:GO:0030529 GO:GO:0033119
GO:GO:0045727 eggNOG:COG0724 GO:GO:0005703 GO:GO:0000381
GeneTree:ENSGT00700000104255 GO:GO:0036099 KO:K12741
OrthoDB:EOG46WWRF EMBL:M15766 EMBL:M25545 EMBL:M28871 EMBL:M28872
EMBL:M33955 EMBL:M31560 EMBL:M28870 EMBL:AY061448 PIR:A26459
RefSeq:NP_524543.1 RefSeq:NP_733249.1 RefSeq:NP_733250.1
RefSeq:NP_733251.1 RefSeq:NP_733252.1 RefSeq:NP_733253.1
UniGene:Dm.7147 ProteinModelPortal:P07909 SMR:P07909 DIP:DIP-19217N
IntAct:P07909 MINT:MINT-764040 STRING:P07909 PaxDb:P07909
PRIDE:P07909 EnsemblMetazoa:FBtr0085300 EnsemblMetazoa:FBtr0085301
GeneID:43385 KEGG:dme:Dmel_CG9983 CTD:43385 FlyBase:FBgn0001215
InParanoid:P07909 OMA:INIVIDK PhylomeDB:P07909 ChiTaRS:Hrb98DE
GenomeRNAi:43385 NextBio:833644 Bgee:P07909 GermOnline:CG9983
Uniprot:P07909
Length = 365
Score = 111 (44.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 24/72 (33%), Positives = 41/72 (56%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L ++ T+E K HF ++G+I+D ++K+ K +G GFI Y++ S + K
Sbjct: 32 KLFIGGLDYRTTDENLKAHFEKWGNIVDVVVMKDPRTKRSRGFGFITYSHS-SMIDEAQK 90
Query: 93 SNKKPYKGKITE 104
S G++ E
Sbjct: 91 SRPHKIDGRVVE 102
Score = 62 (26.9 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 11/48 (22%), Positives = 28/48 (58%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILK 150
E+ +++F +G+I+D ++ + + GK +G F+ + + K +L+
Sbjct: 135 EQSIRDYFQHFGNIVDINIVIDKETGKKRGFAFVEFDDYDPVDKVVLQ 182
>TAIR|locus:2041424 [details] [associations]
symbol:PPa3 "pyrophosphorylase 3" species:3702
"Arabidopsis thaliana" [GO:0000287 "magnesium ion binding"
evidence=IEA] [GO:0004427 "inorganic diphosphatase activity"
evidence=IEA;NAS] [GO:0005737 "cytoplasm" evidence=ISM;IEA]
[GO:0006796 "phosphate-containing compound metabolic process"
evidence=IEA] [GO:0008152 "metabolic process" evidence=ISS]
[GO:0016020 "membrane" evidence=ISS] [GO:0016462 "pyrophosphatase
activity" evidence=ISS] HAMAP:MF_00209 InterPro:IPR008162
Pfam:PF00719 PROSITE:PS00387 GO:GO:0005737 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0000287 EMBL:AC004411 GO:GO:0006796
EMBL:AC005310 KO:K01507 GO:GO:0004427 HOGENOM:HOG000236472
eggNOG:COG0221 Gene3D:3.90.80.10 PANTHER:PTHR10286 SUPFAM:SSF50324
ProtClustDB:PLN02373 OMA:NYGFIKE HSSP:O59570 EMBL:BT025278
IPI:IPI00542102 PIR:T02201 RefSeq:NP_182209.1 UniGene:At.36443
ProteinModelPortal:O82793 SMR:O82793 STRING:O82793 PaxDb:O82793
PRIDE:O82793 EnsemblPlants:AT2G46860.1 GeneID:819299
KEGG:ath:AT2G46860 TAIR:At2g46860 InParanoid:O82793
PhylomeDB:O82793 Genevestigator:O82793 Uniprot:O82793
Length = 216
Score = 125 (49.1 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 44/165 (26%), Positives = 75/165 (45%)
Query: 186 EIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHGYIWNYGALPQTWENPDETD 245
E P N +EI + + D K G ++ ++ Y NYG +P+T
Sbjct: 48 EAPLVFNVVVEITKGSKVK-YELDKKTGLIKVDRILYSSVVYPHNYGFIPRTLCE----- 101
Query: 246 AHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDPNAAK 305
D DP+DVL + + G ++ +A+G++ +ID+G+ D KIIA+ +DP
Sbjct: 102 -------DNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYKH 154
Query: 306 LNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVLNTRVEGESS 350
D+ + H L+ +F+ YK + K V N + ES+
Sbjct: 155 FTDIKQLAPH---RLQEIRRFFEDYKKNENKKVAV-NDFLPSESA 195
>TAIR|locus:2134638 [details] [associations]
symbol:LIF2 "LHP1-Interacting Factor 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006635 "fatty acid beta-oxidation" evidence=RCA]
[GO:0010048 "vernalization response" evidence=RCA] [GO:0016558
"protein import into peroxisome matrix" evidence=RCA] [GO:0048573
"photoperiodism, flowering" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13161 UniGene:At.24279
HSSP:Q9Y5S9 EMBL:AF367357 EMBL:AY113171 EMBL:AK227578
IPI:IPI00532730 RefSeq:NP_001031566.1 RefSeq:NP_567192.1
ProteinModelPortal:Q9ASP6 SMR:Q9ASP6 PRIDE:Q9ASP6
EnsemblPlants:AT4G00830.1 EnsemblPlants:AT4G00830.2 GeneID:827998
KEGG:ath:AT4G00830 TAIR:At4g00830 HOGENOM:HOG000243749
InParanoid:Q9ASP6 PhylomeDB:Q9ASP6 ProtClustDB:CLSN2698006
Genevestigator:Q9ASP6 Uniprot:Q9ASP6
Length = 495
Score = 106 (42.4 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKS 93
+FI LP + EE+ ++ + G+I + +L+K+ D G KG F+ + K A KAI +
Sbjct: 118 VFIGGLPRDVGEEDLRDLCEEIGEIFEVRLMKDRDSGDSKGYAFVAFKTKDVAQKAIEEL 177
Query: 94 NKKPYKGK 101
+ K +KGK
Sbjct: 178 HSKEFKGK 185
Score = 71 (30.1 bits), Expect = 1.4e-05, Sum P(2) = 1.4e-05
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 105 EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
E+ KE F ++G++ GK + GF++YA + SA+KA+ + + G
Sbjct: 306 EQLKELFQRHGEVTKIVTPPGKGGK-RDFGFVHYAERSSALKAVKDTERYEVNG 358
>UNIPROTKB|F1NCI5 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006954 "inflammatory
response" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0032496 "response to lipopolysaccharide" evidence=IEA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006954
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:EDNQHAL EMBL:AADN02028465
IPI:IPI00573116 Ensembl:ENSGALT00000009947 Uniprot:F1NCI5
Length = 328
Score = 87 (35.7 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 21/72 (29%), Positives = 33/72 (45%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILK 92
+LFI L + TE +EHF YG + D ++ N K C GF+ Y+ + A +
Sbjct: 29 KLFIGGLNVQTTEAGLREHFAAYGTLTDCVVVLNPQTKRSRCFGFVTYS-AVEEADAAMA 87
Query: 93 SNKKPYKGKITE 104
++ G E
Sbjct: 88 ASPHAVDGNSVE 99
Score = 86 (35.3 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 99 KGKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKA-ILKSNKKPY 156
KG + E + +HF Q+G + A+++ + GK +G GF+ + N +A KA ++K + P
Sbjct: 127 KGDVGEGDLVQHFSQFGPVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFH--PI 184
Query: 157 KG 158
+G
Sbjct: 185 QG 186
>DICTYBASE|DDB_G0275027 [details] [associations]
symbol:DDB_G0275027 "SRA stem-loop-interacting
RNA-binding protein, mitochondrial" species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0275027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000013 eggNOG:COG0724
ProtClustDB:CLSZ2430003 RefSeq:XP_643856.1
ProteinModelPortal:Q86I71 PRIDE:Q86I71 EnsemblProtists:DDB0167377
GeneID:8619907 KEGG:ddi:DDB_G0275027 InParanoid:Q86I71 OMA:QFESKES
Uniprot:Q86I71
Length = 91
Score = 109 (43.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 25/82 (30%), Positives = 43/82 (52%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILK 92
++F+ LP+ + +E K HF Q+G+I D + L + KG GF+ + +K S AI
Sbjct: 5 KIFVTRLPWSVCKEALKNHFSQFGNIKDCYVVLDRVTKRSKGFGFVQFESKESVQNAINS 64
Query: 93 SN----KKPYKGKITEEEFKEH 110
N +K + ++FKE+
Sbjct: 65 DNEINGRKLVVNEALAKDFKEN 86
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 109 (43.4 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 23/64 (35%), Positives = 37/64 (57%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILK 92
RLF+ L T E+ ++ F +G ++DA+++ + D G+ KG GF+ YA A KA +
Sbjct: 35 RLFVSGLSRLTTNEKLQDAFASFGQLVDARVITDRDSGRSKGFGFVTYATIEDAEKAKAE 94
Query: 93 SNKK 96
N K
Sbjct: 95 MNAK 98
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 103 (41.3 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 21/67 (31%), Positives = 38/67 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN + +E+ KE F +YG + +++ + GK KG GF+++ A +A+ + N
Sbjct: 193 VYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMN 252
Query: 95 KKPYKGK 101
K GK
Sbjct: 253 GKEMNGK 259
Score = 92 (37.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 20/62 (32%), Positives = 36/62 (58%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ +A +AI K
Sbjct: 99 GNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETHEAAERAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
Score = 88 (36.0 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + +E+ KE F +YG + +++ + GK KG GF+++ A +A+ + N K
Sbjct: 196 KNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKE 255
Query: 156 YKGSE 160
G +
Sbjct: 256 MNGKQ 260
Score = 74 (31.1 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
+ +E ++ F +G I A+++ G+ KG GF+ +++ A KA+ + N
Sbjct: 305 LDDERLRKEFSPFGTITSAKVMMEG-GRSKGFGFVCFSSPEEATKAVTEMN 354
>UNIPROTKB|E2RJS6 [details] [associations]
symbol:E2RJS6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03015762
Ensembl:ENSCAFT00000024318 Uniprot:E2RJS6
Length = 316
Score = 101 (40.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 20/72 (27%), Positives = 40/72 (55%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI+ L F+ T+E + HF Q+G + ++++ + K +G GF+ +A + V A +
Sbjct: 15 KLFIRGLSFETTDESLRSHFEQWGTLTGCVVMRDPNTKRSRGFGFVMFAT-VEEVDAAMN 73
Query: 93 SNKKPYKGKITE 104
+ G++ E
Sbjct: 74 ARPNKVNGRVLE 85
Score = 70 (29.7 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 95 KKPYKGKITE--EEFKEHFGQYG--DIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 150
KK + G I E EE +++F QYG ++I+ + GK +G F+ + N S + +++
Sbjct: 105 KKIFVGGIKEDTEEHEDYFEQYGKFEVIEV-MTDQGSGKKRGFAFVTFDNHDSVDQIVIQ 163
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 102 (41.0 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 18/68 (26%), Positives = 41/68 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN + +++ K+ F +YG+ + +++ + +GK +G GF+++ A +A+ + N
Sbjct: 193 VYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDEMN 252
Query: 95 KKPYKGKI 102
K GK+
Sbjct: 253 GKEMNGKL 260
Score = 77 (32.2 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
I +E ++ F +G I A+++ + G+ KG GF+ +++ A KA+ + N
Sbjct: 305 IDDERLRKEFSPFGTITSAKVMMDG-GRSKGFGFVCFSSPEEATKAVTEMN 354
>ZFIN|ZDB-GENE-040426-1546 [details] [associations]
symbol:zgc:66127 "zgc:66127" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1546 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00700000104376 EMBL:CABZ01055593
EMBL:CABZ01000532 EMBL:CABZ01000533 EMBL:CABZ01000534
EMBL:CABZ01000536 EMBL:CABZ01000539 EMBL:CABZ01000540
EMBL:CABZ01085064 EMBL:CABZ01085065 EMBL:CABZ01085066
EMBL:CABZ01085067 EMBL:CABZ01085068 EMBL:CABZ01088246
EMBL:CABZ01088247 EMBL:CABZ01088248 EMBL:CABZ01088249
EMBL:CABZ01088250 EMBL:CABZ01088251 EMBL:CABZ01092715
EMBL:CABZ01092716 EMBL:CABZ01092717 EMBL:CABZ01092718
IPI:IPI00971841 Ensembl:ENSDART00000082448 Bgee:E7FAB3
Uniprot:E7FAB3
Length = 411
Score = 101 (40.6 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 21/72 (29%), Positives = 40/72 (55%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ Y++ + V A +
Sbjct: 39 KLFIGGLSFETTDESLRAHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYSS-VGEVDAAMD 97
Query: 93 SNKKPYKGKITE 104
+ G+ E
Sbjct: 98 ARPHKVDGRAVE 109
Score = 73 (30.8 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLL--KNADGKLKGCGFINY 138
KK + G I T+EE +E+FGQ+G I + ++ KN+D K +G FI +
Sbjct: 129 KKMFVGGIKEDTDEEHLREYFGQFGKIDEVNIMTEKNSD-KRRGFAFITF 177
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 127 (49.8 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 25/67 (37%), Positives = 41/67 (61%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F++NL F T E E F QYG+++DA++ ++A G KG GFI + +A KA ++N
Sbjct: 75 IFVRNLVFDATNEHLAEAFSQYGNVVDAKVARDARGLSKGFGFIYFETPEAAQKACEEAN 134
Query: 95 KKPYKGK 101
+ G+
Sbjct: 135 NTFWHGR 141
>UNIPROTKB|F1M6U1 [details] [associations]
symbol:F1M6U1 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 IPI:IPI00362299 Ensembl:ENSRNOT00000007800
Uniprot:F1M6U1
Length = 252
Score = 105 (42.0 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 23/74 (31%), Positives = 43/74 (58%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF ++G + D ++++ + K +G GF+ Y + V A +
Sbjct: 8 KLFIDGLSFETTDESLRSHFERWGTLTDCVVMRDPNTKRPRGFGFVTYTT-VEEVDAAM- 65
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 66 -NARPHKVDGRVVE 78
Score = 61 (26.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 18/61 (29%), Positives = 33/61 (54%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAIL 149
KK + G I TEE +E+F QYG I +++ + G+ +G F+ + + S K ++
Sbjct: 98 KKIFVGSIKEDTEEHHLREYFEQYGKIEVIEIMTDRGSGQKRGFVFVTFDDHDSVDKIVI 157
Query: 150 K 150
+
Sbjct: 158 Q 158
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 95 (38.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKA 103
Score = 81 (33.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN-KKPYKGSENG 162
EE+ + F +G I + +L++ DG KGC F+ + ++ A AI + + G+ +
Sbjct: 147 EEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSS 206
Query: 163 LISPFHD 169
L+ D
Sbjct: 207 LVVKLAD 213
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 95 (38.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKA 103
Score = 81 (33.6 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN-KKPYKGSENG 162
EE+ + F +G I + +L++ DG KGC F+ + ++ A AI + + G+ +
Sbjct: 147 EEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQSLHGSRTMAGASSS 206
Query: 163 LISPFHD 169
L+ D
Sbjct: 207 LVVKLAD 213
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 92 (37.4 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 34/162 (20%), Positives = 70/162 (43%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + + +E F ++G + +++ + G+ KG GF+N+ A KA+ N K
Sbjct: 196 KNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVADMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + + S +K K M E + R+ + + NL++ ++ ++++
Sbjct: 256 INGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G+ +G + + +P+E T A T G
Sbjct: 316 PYGTITSAKVMTEGGHSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 87 (35.7 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 23/87 (26%), Positives = 47/87 (54%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-- 90
G +FIKNL I + + F +G+I+ +++ + +G +G GF+++ + +A +AI
Sbjct: 99 GNVFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGS-RGHGFVHFETQEAATRAIQT 157
Query: 91 ----LKSNKKPYKGKITEEEFKE-HFG 112
L +++K + G + +E FG
Sbjct: 158 MNGMLLNDRKVFVGHFKSRKEREAEFG 184
>UNIPROTKB|K7GQZ8 [details] [associations]
symbol:LOC100515986 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 GeneTree:ENSGT00550000074641 EMBL:CU861981
Ensembl:ENSSSCT00000036547 Uniprot:K7GQZ8
Length = 88
Score = 108 (43.1 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 20/64 (31%), Positives = 40/64 (62%)
Query: 39 NLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSNKKP 97
N+P++ TEE+ K+ F + G ++ +L+ + + GK KG GF Y ++ +A+ A+ N +
Sbjct: 3 NIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGRE 62
Query: 98 YKGK 101
+ G+
Sbjct: 63 FSGR 66
>WB|WBGene00004315 [details] [associations]
symbol:rbd-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0040010
"positive regulation of growth rate" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0018996
"molting cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0008406 "gonad development" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0006396
"RNA processing" evidence=IMP] [GO:0040039 "inductive cell
migration" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0000478 "endonucleolytic cleavage involved in rRNA processing"
evidence=IMP] [GO:0040025 "vulval development" evidence=IMP]
[GO:0040002 "collagen and cuticulin-based cuticle development"
evidence=IMP] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0040007 GO:GO:0040010
GO:GO:0005730 GO:GO:0008406 GO:GO:0000166 GO:GO:0018996
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040035 GO:GO:0040039
HSSP:P19339 GO:GO:0040002 GO:GO:0040025 eggNOG:COG0724 KO:K14787
HOGENOM:HOG000211156 OMA:VFREKNV GeneTree:ENSGT00700000104575
GO:GO:0000478 EMBL:Z83127 PIR:T25186 RefSeq:NP_502432.1
ProteinModelPortal:Q9XU67 SMR:Q9XU67 DIP:DIP-26131N
MINT:MINT-1105789 STRING:Q9XU67 PaxDb:Q9XU67
EnsemblMetazoa:T23F6.4.1 EnsemblMetazoa:T23F6.4.2 GeneID:178229
KEGG:cel:CELE_T23F6.4 UCSC:T23F6.4.1 CTD:178229 WormBase:T23F6.4
InParanoid:Q9XU67 NextBio:900268 Uniprot:Q9XU67
Length = 872
Score = 141 (54.7 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 31/80 (38%), Positives = 48/80 (60%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
RL +KNLP TE++ ++ F +YG I DA L +GK +G F+ + ++ SA A+ KS
Sbjct: 4 RLIVKNLPSTCTEQQLRKFFEKYGQISDASLKYTKEGKFRGFAFVGFLDEGSASNALAKS 63
Query: 94 NKKPYKGK-ITEEEFKEHFG 112
N+ + K +T EE + FG
Sbjct: 64 NQTFFNSKKLTVEECRP-FG 82
Score = 38 (18.4 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 196 EINLNEPLNPIKQDIKK 212
E+ ++P NP+K + KK
Sbjct: 368 EVVPDDPDNPLKAEAKK 384
>UNIPROTKB|F1MYI2 [details] [associations]
symbol:HNRNPM "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398
GeneTree:ENSGT00410000025635 PANTHER:PTHR23003:SF6
EMBL:DAAA02019521 EMBL:DAAA02019520 IPI:IPI00903735
Ensembl:ENSBTAT00000028022 ArrayExpress:F1MYI2 Uniprot:F1MYI2
Length = 549
Score = 108 (43.1 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 21/60 (35%), Positives = 36/60 (60%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+F+ NL +K+ ++ KE F G ++ A +L++ DGK +G G + + I AV+AI N
Sbjct: 43 VFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFN 102
Score = 68 (29.0 bits), Expect = 2.3e-05, Sum P(2) = 2.3e-05
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
T + K+ F + G ++ A + K +GK KGCG + + + A +A N G E
Sbjct: 484 TWKMLKDKFNECGHVLYADI-KMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 540
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 132 (51.5 bits), Expect = 2.4e-05, P = 2.4e-05
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+++KNL T+++ K FG+YG I A ++K+ +GK KG GF+N+ N A +A+ N
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVESLN 276
Query: 95 KKPYKGK 101
+ K
Sbjct: 277 GHKFDDK 283
Score = 129 (50.5 bits), Expect = 5.0e-05, P = 5.0e-05
Identities = 40/136 (29%), Positives = 66/136 (48%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ ++ ++ G+ KG GF+ YAN+ SA KAI K
Sbjct: 124 GNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEK 183
Query: 93 SN------KKPYKGKITEEEFKEHFG---QYGDIIDAQLLKNA-DGKLKGCGFINYANKI 142
N K+ Y G + ++ ++ ++ L ++ D LK F Y
Sbjct: 184 LNGMLLNDKQVYVGPFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNA-FGEYGKIT 242
Query: 143 SAVKAILKSNKKPYKG 158
SAV ++K + KG
Sbjct: 243 SAV--VMKDGEGKSKG 256
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 101 (40.6 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +F+KNL I + + F +G+I+ ++ + GK K GF++Y ++ SA +AI K
Sbjct: 104 GNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEK 163
Query: 93 SN 94
N
Sbjct: 164 VN 165
Score = 97 (39.2 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
L++KN P +TE ++ F YG+I + ++K + K C FINYA+ SA A+ N
Sbjct: 195 LYVKNFPDSVTETHLRQLFNPYGEIT-SMIVKMDNKNRKFC-FINYADAESAKNAMDNLN 252
Query: 95 KKPYKGKITEE 105
K KIT++
Sbjct: 253 GK----KITDD 259
Score = 80 (33.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + +TE ++ F YG+I + ++K + K C FINYA+ SA A+ N K
Sbjct: 198 KNFPDSVTETHLRQLFNPYGEIT-SMIVKMDNKNRKFC-FINYADAESAKNAMDNLNGK- 254
Query: 156 YKGSENGLISPFHD 169
K +++G I +D
Sbjct: 255 -KITDDGQIDETYD 267
Score = 71 (30.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/98 (24%), Positives = 47/98 (47%)
Query: 108 KEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSENGLISPF 167
+E F +G I A+++++ + KG GF+ +A++ A KA+ + + K G
Sbjct: 467 RELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGK-------- 518
Query: 168 HDIPLYSNVKDKIFNMVVEIP-RWTNAKMEINLNEPLN 204
PLY + +K + + R+ + ++N PLN
Sbjct: 519 ---PLYVGLAEKREQRLSRLQQRFRMHPIRHHMNNPLN 553
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 101 (40.6 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +F+KNL I + + F +G+I+ ++ + GK K GF++Y ++ SA +AI K
Sbjct: 104 GNIFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEK 163
Query: 93 SN 94
N
Sbjct: 164 VN 165
Score = 97 (39.2 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 26/71 (36%), Positives = 40/71 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
L++KN P +TE ++ F YG+I + ++K + K C FINYA+ SA A+ N
Sbjct: 195 LYVKNFPDSVTETHLRQLFNPYGEIT-SMIVKMDNKNRKFC-FINYADAESAKNAMDNLN 252
Query: 95 KKPYKGKITEE 105
K KIT++
Sbjct: 253 GK----KITDD 259
Score = 80 (33.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 24/74 (32%), Positives = 39/74 (52%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + +TE ++ F YG+I + ++K + K C FINYA+ SA A+ N K
Sbjct: 198 KNFPDSVTETHLRQLFNPYGEIT-SMIVKMDNKNRKFC-FINYADAESAKNAMDNLNGK- 254
Query: 156 YKGSENGLISPFHD 169
K +++G I +D
Sbjct: 255 -KITDDGQIDETYD 267
Score = 71 (30.1 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 24/98 (24%), Positives = 47/98 (47%)
Query: 108 KEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSENGLISPF 167
+E F +G I A+++++ + KG GF+ +A++ A KA+ + + K G
Sbjct: 467 RELFEPFGTITSAKVMRDEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGK-------- 518
Query: 168 HDIPLYSNVKDKIFNMVVEIP-RWTNAKMEINLNEPLN 204
PLY + +K + + R+ + ++N PLN
Sbjct: 519 ---PLYVGLAEKREQRLSRLQQRFRMHPIRHHMNNPLN 553
>UNIPROTKB|F1P1R2 [details] [associations]
symbol:RBM19 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0040019 "positive regulation of
embryonic development" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0040019
GeneTree:ENSGT00700000104575 EMBL:AADN02050416 IPI:IPI00822335
Ensembl:ENSGALT00000013489 Uniprot:F1P1R2
Length = 621
Score = 115 (45.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 25/71 (35%), Positives = 41/71 (57%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAIL 91
GRLF++NLPF TEE+ ++ F +YG + + + K KG FI Y AVKA
Sbjct: 78 GRLFVRNLPFTSTEEDLEKIFSKYGPLSEIHFPIDRLTKKPKGFAFITYMIPEHAVKAYA 137
Query: 92 KSNKKPYKGKI 102
+ + + ++G++
Sbjct: 138 EMDGQVFQGRM 148
Score = 61 (26.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKN--ADGKLKGCGFINYANKISAVKA 147
T E +E F +G++ +L K G +G GF+++ K A KA
Sbjct: 507 TVREIRELFSTFGELKTVRLPKKMAGTGSHRGFGFVDFLTKQDAKKA 553
Score = 58 (25.5 bits), Expect = 5.7e-05, Sum P(2) = 5.7e-05
Identities = 18/50 (36%), Positives = 23/50 (46%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNAD--GKL--KGCGFINYANKISAVKAI 148
TE KE F + G + + K D G L G GF+ Y SA KA+
Sbjct: 405 TEGTLKETFSKVGAVKSCTISKKKDKAGTLLSMGFGFVEYKKPESAQKAL 454
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 95 (38.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKA 103
Score = 79 (32.9 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN-KKPYKGSENG 162
EE+ + F +G I + +L++ DG KGC F+ + ++ A AI + + G+ +
Sbjct: 147 EEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSS 206
Query: 163 LISPFHD 169
L+ D
Sbjct: 207 LVVKLAD 213
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 95 (38.5 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKA 103
Score = 79 (32.9 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN-KKPYKGSENG 162
EE+ + F +G I + +L++ DG KGC F+ + ++ A AI + + G+ +
Sbjct: 147 EEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIQGLHGSRTMTGASSS 206
Query: 163 LISPFHD 169
L+ D
Sbjct: 207 LVVKLAD 213
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 95 (38.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 8 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKA 64
Score = 78 (32.5 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 148
EE+ + F +G I + +L++ DG KGC F+ + ++ A AI
Sbjct: 108 EEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAI 152
>UNIPROTKB|Q13151 [details] [associations]
symbol:HNRNPA0 "Heterogeneous nuclear ribonucleoprotein A0"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISS;TAS] [GO:0006954
"inflammatory response" evidence=ISS] [GO:0032496 "response to
lipopolysaccharide" evidence=ISS] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 EMBL:CH471062 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0030529 GO:GO:0000398 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 HOGENOM:HOG000234442 EMBL:U23803 EMBL:CR456986
EMBL:BC001008 EMBL:BC007271 EMBL:BC009284 EMBL:BC011972
EMBL:BC012980 EMBL:BC018949 EMBL:BC019271 EMBL:BC028976
EMBL:BC030249 IPI:IPI00011913 RefSeq:NP_006796.1 UniGene:Hs.645902
UniGene:Hs.96996 ProteinModelPortal:Q13151 SMR:Q13151 IntAct:Q13151
MINT:MINT-5001237 STRING:Q13151 PhosphoSite:Q13151 DMDM:8134660
REPRODUCTION-2DPAGE:Q13151 SWISS-2DPAGE:Q13151 PaxDb:Q13151
PeptideAtlas:Q13151 PRIDE:Q13151 DNASU:10949
Ensembl:ENST00000314940 GeneID:10949 KEGG:hsa:10949 UCSC:uc003lbt.3
CTD:10949 GeneCards:GC05M137114 HGNC:HGNC:5030 HPA:HPA036569
MIM:609409 neXtProt:NX_Q13151 PharmGKB:PA162391106
InParanoid:Q13151 KO:K12894 OMA:GPMKQNL OrthoDB:EOG4W6NX4
PhylomeDB:Q13151 GenomeRNAi:10949 NextBio:41601 Bgee:Q13151
CleanEx:HS_HNRNPA0 Genevestigator:Q13151 GermOnline:ENSG00000177733
Uniprot:Q13151
Length = 305
Score = 90 (36.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 99 KGKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKA-ILKSNKKPY 156
KG + E + EHF Q+G + A+++ + GK +G GF+ + N +A KA ++K + P
Sbjct: 106 KGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFH--PI 163
Query: 157 KG 158
+G
Sbjct: 164 QG 165
Score = 79 (32.9 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILK 92
+LFI L + +E + HF +G + D ++ N K C GF+ Y+N + A +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSN-VEEADAAMA 66
Query: 93 SNKKPYKGKITE 104
++ G E
Sbjct: 67 ASPHAVDGNTVE 78
>UNIPROTKB|F8W646 [details] [associations]
symbol:HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC078778 HGNC:HGNC:5031 ChiTaRS:HNRNPA1 IPI:IPI01022306
ProteinModelPortal:F8W646 SMR:F8W646 PRIDE:F8W646
Ensembl:ENST00000547708 ArrayExpress:F8W646 Bgee:F8W646
Uniprot:F8W646
Length = 156
Score = 112 (44.5 bits), Expect = 3.1e-05, P = 3.1e-05
Identities = 25/74 (33%), Positives = 44/74 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ T+E + HF Q+G + D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYAT-VEEVDAAM- 72
Query: 93 SNKKPYK--GKITE 104
N +P+K G++ E
Sbjct: 73 -NARPHKVDGRVVE 85
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 95 (38.5 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 35/162 (21%), Positives = 72/162 (44%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + + ++ +E F +G+ + +++ + G+ +G GF+NY N A KA+ + N K
Sbjct: 196 KNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKE 255
Query: 156 YKGSENGLISPFHDIPLYSNVKDKIFNMVVE-IPRWTNAKMEI-NLNEPLNP--IKQDIK 211
G + I +K K + E I R+ + + NL++ ++ ++++
Sbjct: 256 VNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRLRKEFS 315
Query: 212 KGNLRYVANVFPHHGYIWNYGALPQTWENPDE-TDAHTGQKG 252
A V G+ +G + + +P+E T A T G
Sbjct: 316 PYGTITSAKVMTEGGHSKGFGFV--CFSSPEEATKAVTEMNG 355
Score = 82 (33.9 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + G +G GF+++ + +A +AI
Sbjct: 99 GNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGS-RGYGFVHFETQEAANRAIQT 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 103 (41.3 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 19/68 (27%), Positives = 40/68 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+++KNL + E+ ++ F Q+G +++++++G+ +G GFIN+ A KA+ N
Sbjct: 193 IYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMN 252
Query: 95 KKPYKGKI 102
K G++
Sbjct: 253 GKEVSGQL 260
Score = 90 (36.7 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/62 (32%), Positives = 34/62 (54%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G I+ ++++ N G +G GF+++ +A KAI
Sbjct: 99 GNIFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGS-RGFGFVHFETHEAAQKAINT 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
Score = 81 (33.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
E+ ++ F Q+G +++++++G+ +G GFIN+ A KA+ N K G
Sbjct: 204 EQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDHMNGKEVSG 258
Score = 73 (30.8 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
I ++ KE F YG I A+++ + KG GF+ +++ A KA+ + N
Sbjct: 305 INDDRLKEVFSTYGVITSAKVMTESSHS-KGFGFVCFSSPEEATKAVTEMN 354
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 95 (38.5 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+LF+ +P + E++ K F ++G I + +LK+ G KGC F+ Y + SA+KA
Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLKDRLTGLHKGCAFLTYCARDSALKA 103
Score = 79 (32.9 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 18/67 (26%), Positives = 34/67 (50%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN-KKPYKGSENG 162
EE+ + F +G I + +L++ DG KGC F+ + ++ A AI + + G+ +
Sbjct: 147 EEDVRRLFQPFGHIEECTVLRSPDGTSKGCAFVKFGSQGEAQAAIRGLHGSRTMAGASSS 206
Query: 163 LISPFHD 169
L+ D
Sbjct: 207 LVVKLAD 213
>UNIPROTKB|F6RSR1 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:DAAA02020383
IPI:IPI00687625 Ensembl:ENSBTAT00000022514 Uniprot:F6RSR1
Length = 310
Score = 90 (36.7 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 99 KGKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKA-ILKSNKKPY 156
KG + E + EHF Q+G + A+++ + GK +G GF+ + N +A KA ++K + P
Sbjct: 111 KGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFH--PI 168
Query: 157 KG 158
+G
Sbjct: 169 QG 170
Score = 79 (32.9 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILK 92
+LFI L + +E + HF +G + D ++ N K C GF+ Y+N + A +
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSN-VEEADAAMA 71
Query: 93 SNKKPYKGKITE 104
++ G E
Sbjct: 72 ASPHAVDGNTVE 83
>UNIPROTKB|E2RBV8 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=IEA] [GO:0032496 "response to
lipopolysaccharide" evidence=IEA] [GO:0019901 "protein kinase
binding" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0006954 "inflammatory response" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0000166 GO:GO:0032496 GO:GO:0006954 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0070935 GeneTree:ENSGT00700000104255 CTD:10949
KO:K12894 OMA:GPMKQNL EMBL:AAEX03007810 RefSeq:XP_538645.2
ProteinModelPortal:E2RBV8 Ensembl:ENSCAFT00000001730 GeneID:481524
KEGG:cfa:481524 NextBio:20856300 Uniprot:E2RBV8
Length = 310
Score = 90 (36.7 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 99 KGKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKA-ILKSNKKPY 156
KG + E + EHF Q+G + A+++ + GK +G GF+ + N +A KA ++K + P
Sbjct: 106 KGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFH--PI 163
Query: 157 KG 158
+G
Sbjct: 164 QG 165
Score = 79 (32.9 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILK 92
+LFI L + +E + HF +G + D ++ N K C GF+ Y+N + A +
Sbjct: 8 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSN-VEEADAAMA 66
Query: 93 SNKKPYKGKITE 104
++ G E
Sbjct: 67 ASPHAVDGNTVE 78
>UNIPROTKB|F1RH94 [details] [associations]
symbol:HNRNPA0 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=IEA] [GO:0032496 "response to lipopolysaccharide"
evidence=IEA] [GO:0019901 "protein kinase binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0006954
"inflammatory response" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0032496
GO:GO:0006954 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0070935
GeneTree:ENSGT00700000104255 OMA:GPMKQNL EMBL:CU468422
Ensembl:ENSSSCT00000015648 Uniprot:F1RH94
Length = 315
Score = 90 (36.7 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 99 KGKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKA-ILKSNKKPY 156
KG + E + EHF Q+G + A+++ + GK +G GF+ + N +A KA ++K + P
Sbjct: 111 KGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKAAVVKFH--PI 168
Query: 157 KG 158
+G
Sbjct: 169 QG 170
Score = 79 (32.9 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 19/72 (26%), Positives = 33/72 (45%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILK 92
+LFI L + +E + HF +G + D ++ N K C GF+ Y+N + A +
Sbjct: 13 KLFIGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSN-VEEADAAMA 71
Query: 93 SNKKPYKGKITE 104
++ G E
Sbjct: 72 ASPHAVDGNTVE 83
>UNIPROTKB|F1LYG7 [details] [associations]
symbol:F1LYG7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024667 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0000398 InterPro:IPR024666 PANTHER:PTHR23003:SF6 Pfam:PF11532
EMBL:AC113901 IPI:IPI00360639 Ensembl:ENSRNOT00000010809
ArrayExpress:F1LYG7 Uniprot:F1LYG7
Length = 678
Score = 100 (40.3 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 26/83 (31%), Positives = 45/83 (54%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQ-YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI 90
R + FI N+PF + + K+ + G++ +LL +A+GK +GC + + + S KA+
Sbjct: 67 RYKAFITNIPFDVKWQSLKDLAKEKVGEVTYMELLMDAEGKSRGCAVVEFKMEESMKKAV 126
Query: 91 LKSNKKPYKG---KITEEEFKEH 110
NK +KG K+ E+ EH
Sbjct: 127 EVLNK--HKGRPLKVEEDPDGEH 147
Score = 77 (32.2 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 105 EEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
++ KE F G ++ A +L++ DGK G G + + AV+A+ N
Sbjct: 212 KKLKEVFSMAGAVVRADILEDKDGKSHGLGTVTFEQSTEAVQALFMFN 259
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 92 (37.4 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 47/183 (25%), Positives = 86/183 (46%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGSEN 161
+T++ F QYG + ++++ G+ +G GF+N+ N +A KA ++S GS+
Sbjct: 213 VTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPENAKKA-MESLCGLQLGSKK 271
Query: 162 GLISP-FHDIPLYSNVKDKIFNMVVEIP--RWTNAKMEINLNEPLNPIK-QDIKKGNLRY 217
+ +K K + + P RW+N ++ NL+E +N + ++I +
Sbjct: 272 LFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVK-NLSESMNETRLREIFGCYGQI 330
Query: 218 V-ANVFPH-HGYIWNYGALPQTWENPDET-DAHTGQKG---DGDPIDVLEIGERIAKRGE 271
V A V H +G +G + + N +E+ A G DG PI V+ + ER R +
Sbjct: 331 VSAKVMCHENGRSKGFGFV--CFSNCEESKQAKRYLNGFLVDGKPI-VVRVAERKEDRIK 387
Query: 272 IIQ 274
+Q
Sbjct: 388 RLQ 390
Score = 83 (34.3 bits), Expect = 3.5e-05, Sum P(2) = 3.5e-05
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
L++KNL IT + F +G I+ ++++ +G+ KG GF+ + + SAV A
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEE-NGQSKGFGFVQFDTEQSAVSA 167
Score = 78 (32.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 19/70 (27%), Positives = 35/70 (50%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKAIL 91
G L++ +L +TE++ + F ++ L +N+ GK +IN+ + SA A+
Sbjct: 21 GSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMT 80
Query: 92 KSNKKPYKGK 101
+ N KGK
Sbjct: 81 RLNHSDLKGK 90
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 101 (40.6 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKS 93
L+I LP +T+++ +E FG+YG II++++L + A G +G FI + + A AI
Sbjct: 122 LYISGLPKTMTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDL 181
Query: 94 N-KKP 97
N +KP
Sbjct: 182 NGQKP 186
Score = 86 (35.3 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKS 93
L + LP ++++E + F G++ A+L+++ G G GF+NY N A +AI
Sbjct: 36 LIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAISTL 95
Query: 94 N 94
N
Sbjct: 96 N 96
Score = 84 (34.6 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 21/61 (34%), Positives = 37/61 (60%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSN-KKPYKGS 159
+T+++ +E FG+YG II++++L + A G +G FI + + A AI N +KP +
Sbjct: 131 MTQKDVEEMFGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQKPPGAA 190
Query: 160 E 160
E
Sbjct: 191 E 191
Score = 55 (24.4 bits), Expect = 0.00071, Sum P(2) = 0.00071
Identities = 12/43 (27%), Positives = 23/43 (53%)
Query: 111 FGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSN 152
FG +G + + +++++ + K KG GF+ + A AI N
Sbjct: 278 FGPFGAVTNVKVIRDFNTNKCKGFGFVTMTHYEEAAMAIASLN 320
>UNIPROTKB|F1PGQ0 [details] [associations]
symbol:F1PGQ0 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 InterPro:IPR021662
Pfam:PF11627 GeneTree:ENSGT00550000074566 EMBL:AAEX03010176
Ensembl:ENSCAFT00000005615 OMA:RRYQRIT Uniprot:F1PGQ0
Length = 318
Score = 107 (42.7 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 25/73 (34%), Positives = 42/73 (57%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
+LFI L F+ TEE + HF Q+G D ++++ + K +G GF+ YA + V A +
Sbjct: 15 KLFIGGLSFETTEESLRSHFEQWGTFTDCVVMRDPNTKRSRGVGFLMYAT-VEEVDAAM- 72
Query: 93 SNKKPY-KGKITE 104
N +P+ G++ E
Sbjct: 73 -NARPHVDGRVVE 84
Score = 60 (26.2 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
Identities = 17/60 (28%), Positives = 31/60 (51%)
Query: 95 KKPYKGKI---TEEE-FKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 150
KK + G I TEE +++F QYG I +++ + KG F+ + + S K +++
Sbjct: 104 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKGFAFVTFDDHDSVDKIVIQ 163
>UNIPROTKB|G3V6A5 [details] [associations]
symbol:Hnrpd "Heterogeneous nuclear ribonucleoprotein D,
isoform CRA_c" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:620365 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0030529
GeneTree:ENSGT00700000104347 KO:K13044 InterPro:IPR012956
Pfam:PF08143 RefSeq:NP_001076008.1 UniGene:Rn.94022 GeneID:79256
KEGG:rno:79256 CTD:79256 NextBio:614748 EMBL:CH474022
Ensembl:ENSRNOT00000003173 Uniprot:G3V6A5
Length = 334
Score = 102 (41.0 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 20/73 (27%), Positives = 41/73 (56%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAIL 91
G++FI L + T+++ K++F ++GD++D L L G+ +G GF+ + S K ++
Sbjct: 76 GKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGFVLFKESESVDK-VM 134
Query: 92 KSNKKPYKGKITE 104
+ GK+ +
Sbjct: 135 DQKEHKLNGKVID 147
Score = 66 (28.3 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 104 EEEFKEHFGQYGDIIDAQL-LKNADGKLKGCGFINYANKISAVKAILK 150
EE+ +E+FG +G++ +L + N K +G FI + + VK I++
Sbjct: 174 EEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEE-EPVKKIME 220
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 89 (36.4 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
T+E+ ++ F +G I + +L+ DG KGC F+ + A AI + + G+ +
Sbjct: 108 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 167
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 168 SLVVKFAD 175
Score = 84 (34.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 40 LPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+P + E++ K F Q+G I + ++K+ G KGC F+ Y + SA+KA
Sbjct: 15 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA 65
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 89 (36.4 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKSNKKPYKGSEN 161
T+E+ ++ F +G I + +L+ DG KGC F+ + A AI + + G+ +
Sbjct: 108 TDEDVRKMFEPFGTIDECTVLRGPDGTSKGCAFVKFQTHAEAQAAINTLHSSRTLPGASS 167
Query: 162 GLISPFHD 169
L+ F D
Sbjct: 168 SLVVKFAD 175
Score = 84 (34.6 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 40 LPFKITEEEFKEHFGQYGDIIDAQLLKNA-DGKLKGCGFINYANKISAVKA 89
+P + E++ K F Q+G I + ++K+ G KGC F+ Y + SA+KA
Sbjct: 16 IPRHLEEKDLKPIFEQFGRIFELTVIKDKYTGLHKGCAFLTYCARDSALKA 66
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 102 (41.0 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
++IKN ++ ++ FG++G ++ +++ + GK KG GF+++ A KA+ + N
Sbjct: 193 VYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 95 KKPYKGK 101
K GK
Sbjct: 253 GKELNGK 259
Score = 90 (36.7 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 20/62 (32%), Positives = 37/62 (59%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K
Sbjct: 99 GNVFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGS-KGHGFVHFETEEAAERAIEK 157
Query: 93 SN 94
N
Sbjct: 158 MN 159
Score = 86 (35.3 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 16/63 (25%), Positives = 34/63 (53%)
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
K + ++ ++ FG++G ++ +++ + GK KG GF+++ A KA+ + N K
Sbjct: 196 KNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDEMNGKE 255
Query: 156 YKG 158
G
Sbjct: 256 LNG 258
Score = 70 (29.7 bits), Expect = 9.0e-05, Sum P(2) = 9.0e-05
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 152
I +E ++ F +G I +++ G+ KG GF+ +++ A KA+ + N
Sbjct: 305 IDDERLQKEFSPFGTITSTKVMTEG-GRSKGFGFVCFSSPEEATKAVSEMN 354
>UNIPROTKB|F5H606 [details] [associations]
symbol:RBM7 "RNA-binding protein 7" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HGNC:HGNC:9904
EMBL:AP002373 IPI:IPI01013862 ProteinModelPortal:F5H606 SMR:F5H606
Ensembl:ENST00000542140 ArrayExpress:F5H606 Bgee:F5H606
Uniprot:F5H606
Length = 123
Score = 105 (42.0 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAI-LKS 93
LF+ NL K+TEE E F Q G +I ++ K+ DGK K F+N+ +++S A+ L +
Sbjct: 12 LFVGNLETKVTEELLFELFHQAGPVIKVKIPKDKDGKPKQFAFVNFKHEVSVPYAMNLLN 71
Query: 94 NKKPYKGKITEEEFK 108
K Y G+ + +F+
Sbjct: 72 GIKLY-GRPIKIQFR 85
WARNING: HSPs involving 265 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.138 0.417 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 451 409 0.00079 118 3 11 22 0.44 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 515
No. of states in DFA: 615 (65 KB)
Total size of DFA: 263 KB (2137 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 37.15u 0.08s 37.23t Elapsed: 00:00:24
Total cpu time: 37.19u 0.08s 37.27t Elapsed: 00:00:25
Start: Thu Aug 15 12:41:06 2013 End: Thu Aug 15 12:41:31 2013
WARNINGS ISSUED: 2