RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy300
(451 letters)
>d1e9ga_ b.40.5.1 (A:) Inorganic pyrophosphatase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 284
Score = 219 bits (560), Expect = 2e-69
Identities = 120/183 (65%), Positives = 145/183 (79%)
Query: 159 SENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYV 218
+ +S FHDIPLY++ ++ IFNMVVEIPRWTNAK+EI E LNPI QD KKG LR+V
Sbjct: 21 KDGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEITKEETLNPIIQDTKKGKLRFV 80
Query: 219 ANVFPHHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKAL 278
N FPHHGYI NYGA PQTWE+P+ + T GD DPIDVLEIGE IA G++ QVKAL
Sbjct: 81 RNCFPHHGYIHNYGAFPQTWEDPNVSHPETKAVGDNDPIDVLEIGETIAYTGQVKQVKAL 140
Query: 279 GVIGLIDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPE 338
G++ L+DEG+TDWK+IAI++NDP A KLND+ D+E +FPG L+ATNEWF+IYKIPDGKPE
Sbjct: 141 GIMALLDEGETDWKVIAIDINDPLAPKLNDIEDVEKYFPGLLRATNEWFRIYKIPDGKPE 200
Query: 339 NVL 341
N
Sbjct: 201 NQF 203
Score = 66.9 bits (163), Expect = 6e-13
Identities = 24/39 (61%), Positives = 32/39 (82%)
Query: 380 SENGLISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+ +S FHDIPLY++ ++ IFNMVVEIPRWTNAK+E+
Sbjct: 21 KDGKPVSAFHDIPLYADKENNIFNMVVEIPRWTNAKLEI 59
>d1twla_ b.40.5.1 (A:) Inorganic pyrophosphatase {Pyrococcus
furiosus [TaxId: 2261]}
Length = 173
Score = 148 bits (374), Expect = 2e-43
Identities = 46/177 (25%), Positives = 77/177 (43%), Gaps = 27/177 (15%)
Query: 165 SPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPH 224
+PFHD+ +V ++ ++EIP+ + K E+ D K G L+ ++
Sbjct: 1 NPFHDLEPGPDV-PEVVYAIIEIPKGSRNKYEL-----------DKKTGLLKLDRVLYSP 48
Query: 225 HGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLI 284
Y +YG +P+TW DP D++ I II+ + +G+ +I
Sbjct: 49 FFYPVDYGIIPRTWYED------------DDPFDIMVIMREPVYPLTIIEARPIGLFKMI 96
Query: 285 DEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVL 341
D G D+K++A+ V DP D+ D+ +L +FK YK GK V
Sbjct: 97 DSGDKDYKVLAVPVEDPYFKDWKDIDDVP---KAFLDEIAHFFKRYKELQGKEIIVE 150
Score = 51.5 bits (123), Expect = 2e-08
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 386 SPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV 418
+PFHD+ +V ++ ++EIP+ + K E+
Sbjct: 1 NPFHDLEPGPDV-PEVVYAIIEIPKGSRNKYEL 32
>d2prda_ b.40.5.1 (A:) Inorganic pyrophosphatase {Thermus
thermophilus [TaxId: 274]}
Length = 174
Score = 133 bits (335), Expect = 1e-37
Identities = 39/181 (21%), Positives = 72/181 (39%), Gaps = 29/181 (16%)
Query: 167 FHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHHG 226
+P+ + + +MV+E+PR + K E D G ++ +
Sbjct: 3 LKSLPVGDKAPE-VVHMVIEVPRGSGNKYEY-----------DPDLGAIKLDRVLPGAQF 50
Query: 227 YIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDE 286
Y +YG +P T DGDP+D L + G +++V+ +G++ + DE
Sbjct: 51 YPGDYGFIPSTLAE------------DGDPLDGLVLSTYPLLPGVVVEVRVVGLLLMEDE 98
Query: 287 GQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVLNTRVE 346
D K+I + D + D+ D+ G + +F+ YK + K +V
Sbjct: 99 KGGDAKVIGVVAEDQRLDHIQDIGDV---PEGVKQEIQHFFETYKALEAKKGKW--VKVT 153
Query: 347 G 347
G
Sbjct: 154 G 154
Score = 43.7 bits (103), Expect = 9e-06
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
Query: 388 FHDIPLYSNVKDKIFNMVVEIPRWTNAKMEVGNAM-EMRLYLVCFNL---PSPLGYLQLN 443
+P+ + + +MV+E+PR + K E + ++L V P G++
Sbjct: 3 LKSLPVGDKAPE-VVHMVIEVPRGSGNKYEYDPDLGAIKLDRVLPGAQFYPGDYGFIPST 61
Query: 444 L 444
L
Sbjct: 62 L 62
>d1i40a_ b.40.5.1 (A:) Inorganic pyrophosphatase {Escherichia coli
[TaxId: 562]}
Length = 175
Score = 128 bits (322), Expect = 1e-35
Identities = 35/177 (19%), Positives = 66/177 (37%), Gaps = 26/177 (14%)
Query: 167 FHDIPLYSNVKDKIFNMVVEIPRWT-NAKMEINLNEPLNPIKQDIKKGNLRYVANVFPHH 225
++P ++ + +V+EIP K EI D + G L +
Sbjct: 2 LLNVPAGKDLPE-DIYVVIEIPANADPIKYEI-----------DKESGALFVDRFMSTAM 49
Query: 226 GYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGLID 285
Y NYG + T DGDP+DVL + G + + + +GV+ + D
Sbjct: 50 FYPCNYGYINHTLSL------------DGDPVDVLVPTPYPLQPGSVTRCRPVGVLKMTD 97
Query: 286 EGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGKPENVLN 342
E D K++A+ + + + + + D+ +F+ YK + +
Sbjct: 98 EAGEDAKLVAVPHSKLS-KEYDHIKDVNDLPELLKAQIAHFFEHYKDLEKGKWVKVE 153
Score = 41.8 bits (98), Expect = 4e-05
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 388 FHDIPLYSNVKDKIFNMVVEIPRWT-NAKMEV 418
++P ++ + +V+EIP K E+
Sbjct: 2 LLNVPAGKDLPE-DIYVVIEIPANADPIKYEI 32
>d1qeza_ b.40.5.1 (A:) Inorganic pyrophosphatase {Archaeon
Sulfolobus acidocaldarius [TaxId: 2285]}
Length = 170
Score = 125 bits (315), Expect = 8e-35
Identities = 43/173 (24%), Positives = 75/173 (43%), Gaps = 31/173 (17%)
Query: 164 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYVANVFP 223
+SP + P + N++VEIP+ +N K E D ++G ++ ++
Sbjct: 2 LSPGKNAP-------DVVNVLVEIPQGSNIKYEY-----------DDEEGVIKVDRVLYT 43
Query: 224 HHGYIWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKRGEIIQVKALGVIGL 283
Y +NYG +P T E DGDP+DVL I G +I+V+ +G++ +
Sbjct: 44 SMNYPFNYGFIPGTLEE------------DGDPLDVLVITNYQLYPGSVIEVRPIGILYM 91
Query: 284 IDEGQTDWKIIAINVNDPNAAKLNDVADIETHFPGYLKATNEWFKIYKIPDGK 336
DE D KI+A+ + +++ DI +F+ YK +
Sbjct: 92 KDEEGEDAKIVAVPKDK-TDPSFSNIKDINDLPQATKNKIVHFFEHYKELEPG 143
Score = 46.5 bits (110), Expect = 1e-06
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 11/61 (18%)
Query: 385 ISPFHDIPLYSNVKDKIFNMVVEIPRWTNAKMEV----GNAMEMRLYLVCFNLPSPLGYL 440
+SP + P + N++VEIP+ +N K E G R+ N P G++
Sbjct: 2 LSPGKNAP-------DVVNVLVEIPQGSNIKYEYDDEEGVIKVDRVLYTSMNYPFNYGFI 54
Query: 441 Q 441
Sbjct: 55 P 55
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 66.1 bits (161), Expect = 2e-14
Identities = 18/69 (26%), Positives = 38/69 (55%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
G+L + NL F +++ + +E F ++G + A + + G+ G +++ K A+KA+ +
Sbjct: 1 GKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQ 60
Query: 93 SNKKPYKGK 101
N P G+
Sbjct: 61 YNGVPLDGR 69
Score = 44.5 bits (105), Expect = 8e-07
Identities = 13/58 (22%), Positives = 30/58 (51%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+++ + +E F ++G + A + + G+ G +++ K A+KA+ + N P G
Sbjct: 11 GVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG 68
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 67.7 bits (164), Expect = 6e-14
Identities = 33/163 (20%), Positives = 66/163 (40%), Gaps = 36/163 (22%)
Query: 25 KKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANK 83
K+P++ ++ LFI L F+ T+E + HF Q+G + D ++++ + + +G GF+ YA
Sbjct: 1 KEPEQLRK--LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 58
Query: 84 ISAVKAILKSNKKPYKGK--------------------------------ITEEEFKEHF 111
A+ K E +++F
Sbjct: 59 EEVDAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYF 118
Query: 112 GQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSNK 153
QYG I +++ + GK +G F+ + + S K +++
Sbjct: 119 EQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQKYH 161
Score = 43.8 bits (102), Expect = 9e-06
Identities = 15/86 (17%), Positives = 38/86 (44%), Gaps = 1/86 (1%)
Query: 11 KKEFKKKGKKKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD- 69
E K+ ++ ++ ++F+ + E +++F QYG I +++ +
Sbjct: 76 VVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGS 135
Query: 70 GKLKGCGFINYANKISAVKAILKSNK 95
GK +G F+ + + S K +++
Sbjct: 136 GKKRGFAFVTFDDHDSVDKIVIQKYH 161
Score = 38.8 bits (89), Expect = 4e-04
Identities = 25/164 (15%), Positives = 51/164 (31%), Gaps = 15/164 (9%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSNKKPYKGS 159
+ T+E + HF Q+G + D ++++ + + +G GF+ YA A+ K
Sbjct: 17 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHKVDGRV 76
Query: 160 ENGLISPFHDIPLYSNVKDKIFN-MVVEIPRWTNAKMEINLNEPLNPIKQDIKKGNLRYV 218
+ + + V I T + E I+
Sbjct: 77 VEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEV--------IE 128
Query: 219 ANVFPHHGYIWNYGALPQTWENPDETDA---HTGQKGDGDPIDV 259
G + + T+++ D D +G +V
Sbjct: 129 IMTDRGSGKKRGFAFV--TFDDHDSVDKIVIQKYHTVNGHNCEV 170
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 63.0 bits (153), Expect = 3e-13
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
Query: 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD--GKLKGCGFINYANKI 84
P K ++ ++N+PF+ + E +E F +G++ +L K G +G GF+++ K
Sbjct: 3 PKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQ 62
Query: 85 SAVKAILK-SNKKPYKGK 101
A KA + G+
Sbjct: 63 DAKKAFNALCHSTHLYGR 80
Score = 42.2 bits (99), Expect = 6e-06
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNAD--GKLKGCGFINYANKISAVKAILK-SNKKPYK 157
+ + E +E F +G++ +L K G +G GF+++ K A KA +
Sbjct: 19 QANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 78
Query: 158 G 158
G
Sbjct: 79 G 79
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 59.9 bits (145), Expect = 3e-12
Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLK-GCGFINYANKISAVKAILKS 93
L++ +L +TE E F G I+ ++ ++ + G ++N+ A +A+
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 94 NKKPYKGK 101
N KGK
Sbjct: 63 NFDVIKGK 70
Score = 43.4 bits (102), Expect = 2e-06
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLK-GCGFINYANKISAVKAILKSNKKPYKG 158
+TE E F G I+ ++ ++ + G ++N+ A +A+ N KG
Sbjct: 11 DVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKG 69
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 58.4 bits (141), Expect = 1e-11
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISA 86
+ K L++ NLP IT+++ FG+YG I+ +L++ F+ Y + A
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 61
Query: 87 VKAILKSNKKPYKG 100
+AI N +G
Sbjct: 62 QEAISALNNVIPEG 75
Score = 41.1 bits (96), Expect = 1e-05
Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKSNKKPYKGS 159
IT+++ FG+YG I+ +L++ F+ Y + A +AI N +G
Sbjct: 17 TITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGG 76
Query: 160 E 160
Sbjct: 77 S 77
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 57.2 bits (138), Expect = 4e-11
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 8/78 (10%)
Query: 25 KKPDKTKRGRLFIKNL-PFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANK 83
K ++ R+FI NL + + + + F +YG I+ + KG F+ Y N+
Sbjct: 8 KTDPRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV-------HKGFAFVQYVNE 60
Query: 84 ISAVKAILKSNKKPYKGK 101
+A A+ + + G+
Sbjct: 61 RNARAAVAGEDGRMIAGQ 78
Score = 42.2 bits (99), Expect = 7e-06
Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+ + + + F +YG I+ + K G F+ Y N+ +A A+ + + G
Sbjct: 28 VKKSDVEAIFSKYGKIVGCSVHK-------GFAFVQYVNERNARAAVAGEDGRMIAG 77
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 57.3 bits (138), Expect = 6e-11
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 22/114 (19%)
Query: 25 KKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKI 84
+ P + R L+I+NLP+KIT EE + FG+YG I + + +G ++ Y +
Sbjct: 1 RLPPEVNR-ILYIRNLPYKITAEEMYDIFGKYGPIRQIR--VGNTPETRGTAYVVYEDIF 57
Query: 85 SAVKAILKSNKKPYKGKI-------------------TEEEFKEHFGQYGDIID 119
A A + + EE+ K +YG D
Sbjct: 58 DAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLLKEKYGINTD 111
Score = 40.4 bits (94), Expect = 5e-05
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
KIT EE + FG+YG I + + +G ++ Y + A A +
Sbjct: 18 KITAEEMYDIFGKYGPIRQIR--VGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCN 73
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 55.4 bits (133), Expect = 9e-11
Identities = 15/69 (21%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 92
++FI L ++ T+E +E+FGQ+G++ + ++++ + +G GF+ + ++ K +
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-A 60
Query: 93 SNKKPYKGK 101
++ K
Sbjct: 61 QSRHELDSK 69
Score = 38.0 bits (88), Expect = 1e-04
Identities = 12/55 (21%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKK 154
+ T+E +E+FGQ+G++ + ++++ + +G GF+ + ++ K + +S +
Sbjct: 11 QTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHE 65
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 56.2 bits (135), Expect = 9e-11
Identities = 22/83 (26%), Positives = 45/83 (54%), Gaps = 2/83 (2%)
Query: 20 KKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFI 78
+ERKK +K + +LFI L F+ TEE + ++ Q+G + D ++++ A + +G GF+
Sbjct: 8 VPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFV 67
Query: 79 NYANKISAVKAILKSNKKPYKGK 101
+++ A+ + G+
Sbjct: 68 TFSSMAEVDAAM-AARPHSIDGR 89
Score = 33.9 bits (77), Expect = 0.007
Identities = 11/54 (20%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKK 154
TEE + ++ Q+G + D ++++ A + +G GF+ +++ A+
Sbjct: 32 TTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAARPHS 85
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 55.0 bits (132), Expect = 1e-10
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILK 92
L + LP +T+ E F G I +++++ G G F+++ +++ + +AI
Sbjct: 4 NLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKV 63
Query: 93 SNKKPYKGK 101
N + K
Sbjct: 64 LNGITVRNK 72
Score = 37.7 bits (87), Expect = 2e-04
Identities = 11/58 (18%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+T+ E F G I +++++ G G F+++ +++ + +AI N +
Sbjct: 14 MTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRN 71
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 55.4 bits (133), Expect = 2e-10
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVK 88
K+ G +FIKNL I + + F +G+I+ +++ + +G KG GF+++ + +A +
Sbjct: 5 KSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAER 63
Query: 89 AILKSNKKPYKGK 101
AI K N +
Sbjct: 64 AIEKMNGMLLNDR 76
Score = 35.0 bits (80), Expect = 0.002
Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
I + + F +G+I+ +++ + +G KG GF+++ + +A +AI K N
Sbjct: 19 SIDNKALYDTFSAFGNILSCKVVCDENGS-KGYGFVHFETQEAAERAIEKMNGMLLND 75
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 55.1 bits (132), Expect = 2e-10
Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLK--GCGFINYANKISAVKAILK 92
+FI NL +I E+ + F +G I+ + G FIN+A+ ++ AI
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 93 SNKKPYKGK 101
N + +
Sbjct: 61 MNGQYLCNR 69
Score = 39.0 bits (90), Expect = 7e-05
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 2/59 (3%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLK--GCGFINYANKISAVKAILKSNKKPYKG 158
I E+ + F +G I+ + G FIN+A+ ++ AI N +
Sbjct: 10 IDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN 68
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 54.7 bits (131), Expect = 2e-10
Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD----GKLKGCGFINYANKISAVKAI 90
LFIKNL F TEE K F + G I + K + G GF+ Y A KA+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 91 LKSNKKPYKGK 101
+ G
Sbjct: 61 KQLQGHTVDGH 71
Score = 38.1 bits (88), Expect = 2e-04
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 4/62 (6%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNAD----GKLKGCGFINYANKISAVKAILKSNKKPY 156
TEE K F + G I + K + G GF+ Y A KA+ +
Sbjct: 9 STTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTV 68
Query: 157 KG 158
G
Sbjct: 69 DG 70
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 54.2 bits (130), Expect = 4e-10
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
T+R RLF+ NLP ITEEE ++ F +YG + + K+ GFI + A A
Sbjct: 6 TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG-----FGFIRLETRTLAEIA 60
Query: 90 ILKSNKKPYKGK 101
++ + P +GK
Sbjct: 61 KVELDNMPLRGK 72
Score = 33.4 bits (76), Expect = 0.007
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 5/57 (8%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
ITEEE ++ F +YG + + K+ GFI + A A ++ + P +G
Sbjct: 20 ITEEEMRKLFEKYGKAGEVFIHKDKG-----FGFIRLETRTLAEIAKVELDNMPLRG 71
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 54.2 bits (130), Expect = 4e-10
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILK 92
L++ NL F TEE+ E F + GDI + + G F+ Y ++ A A+
Sbjct: 9 TLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRY 68
Query: 93 SNKKPYKGKI 102
N +I
Sbjct: 69 INGTRLDDRI 78
Score = 36.9 bits (85), Expect = 5e-04
Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
TEE+ E F + GDI + + G F+ Y ++ A A+ N
Sbjct: 18 YTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD 76
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 54.3 bits (130), Expect = 6e-10
Identities = 15/89 (16%), Positives = 37/89 (41%)
Query: 19 KKKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFI 78
+ + ++ + ++ + EE F E +YG++ + + N L G ++
Sbjct: 14 QNSSQSADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYV 73
Query: 79 NYANKISAVKAILKSNKKPYKGKITEEEF 107
+ + A KA++ N + + G+ E
Sbjct: 74 KFRREEDAEKAVIDLNNRWFNGQPIHAEL 102
Score = 45.8 bits (108), Expect = 4e-07
Identities = 14/58 (24%), Positives = 28/58 (48%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+ EE F E +YG++ + + N L G ++ + + A KA++ N + + G
Sbjct: 38 EFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG 95
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 53.5 bits (128), Expect = 6e-10
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 31 KRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLK-GCGFINYANKISAVKA 89
+ L++ LP +T++E ++ F QYG II +++L + + G GFI + +I A +A
Sbjct: 5 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEA 64
Query: 90 ILKSNKKPYKGK 101
I N + G
Sbjct: 65 IKGLNGQKPSGA 76
Score = 37.3 bits (86), Expect = 3e-04
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLK-GCGFINYANKISAVKAILKSNKKPYKGS 159
+T++E ++ F QYG II +++L + + G GFI + +I A +AI N + G+
Sbjct: 17 TMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGA 76
Query: 160 E 160
Sbjct: 77 T 77
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 53.8 bits (129), Expect = 6e-10
Identities = 12/87 (13%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 15 KKKGKKKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKG 74
+ + + + + P ++ + +T++ ++ F +G I++ ++
Sbjct: 4 QLRFEDVVNQSSPKNC---TVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG----- 55
Query: 75 CGFINYANKISAVKAILKSNKKPYKGK 101
F+ ++ SA AI+ N +G
Sbjct: 56 YSFVRFSTHESAAHAIVSVNGTTIEGH 82
Score = 37.3 bits (86), Expect = 4e-04
Identities = 11/58 (18%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+T++ ++ F +G I++ ++ F+ ++ SA AI+ N +G
Sbjct: 29 GLTDQLMRQTFSPFGQIMEIRVFPEKG-----YSFVRFSTHESAAHAIVSVNGTTIEG 81
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 53.2 bits (127), Expect = 9e-10
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLK------NADGKLKGCGFINYANKISAV 87
RL++ N+PF ITEE + F + + K F+ + +
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 88 KAILKSNKKPYKGK 101
+A+ + ++G+
Sbjct: 63 QAMAF-DGIIFQGQ 75
Score = 37.0 bits (85), Expect = 5e-04
Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 6/59 (10%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLK------NADGKLKGCGFINYANKISAVKAILKSNKK 154
ITEE + F + + K F+ + + +A+
Sbjct: 13 ITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGII 71
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 53.1 bits (127), Expect = 1e-09
Identities = 23/74 (31%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAV 87
K+ RL + N+PF+ + + ++ FGQ+G I+D +++ N G KG GF+ + N A
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGS-KGFGFVTFENSADAD 65
Query: 88 KAILKSNKKPYKGK 101
+A K + +G+
Sbjct: 66 RAREKLHGTVVEGR 79
Score = 34.3 bits (78), Expect = 0.005
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+ + + ++ FGQ+G I+D +++ N G KG GF+ + N A +A K + +G
Sbjct: 22 RFRDPDLRQMFGQFGKILDVEIIFNERGS-KGFGFVTFENSADADRAREKLHGTVVEG 78
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 52.8 bits (126), Expect = 1e-09
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 24 RKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKG-CGFINYAN 82
R PD L + L TE + +E F +YG I D ++ + + F+ + N
Sbjct: 3 RANPDPNCC--LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFEN 60
Query: 83 KISAVKAILKSNKKPYKGK 101
A +A ++N G+
Sbjct: 61 VDDAKEAKERANGMELDGR 79
Score = 33.9 bits (77), Expect = 0.005
Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKG-CGFINYANKISAVKAILKSNKKPYKG 158
TE + +E F +YG I D ++ + + F+ + N A +A ++N G
Sbjct: 20 YTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG 78
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1,
SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 52.8 bits (126), Expect = 1e-09
Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 2/75 (2%)
Query: 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISA 86
P R+++ NLP I ++ ++ F +YG I D L F+ + + A
Sbjct: 9 PAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN--RRGGPPFAFVEFEDPRDA 66
Query: 87 VKAILKSNKKPYKGK 101
A+ + Y G
Sbjct: 67 EDAVYGRDGYDYDGY 81
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 51.6 bits (123), Expect = 3e-09
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Query: 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKG-CGFINYANKIS 85
++ + +++ L K++E E F Q G +++ + K+ GF+ + ++
Sbjct: 4 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEED 63
Query: 86 AVKAILKSNKKPYKGK 101
A AI + GK
Sbjct: 64 ADYAIKIMDMIKLYGK 79
Score = 33.5 bits (76), Expect = 0.009
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKG-CGFINYANKISAVKAILKSNKKPYKG 158
K++E E F Q G +++ + K+ GF+ + ++ A AI + G
Sbjct: 20 KVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG 78
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 51.3 bits (122), Expect = 3e-09
Identities = 24/71 (33%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 32 RGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAI 90
+ L + LP +T+EEF+ FG G+I +L+++ G+ G GF+NY + A KAI
Sbjct: 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAI 61
Query: 91 LKSNKKPYKGK 101
N + K
Sbjct: 62 NTLNGLRLQTK 72
Score = 33.9 bits (77), Expect = 0.005
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+T+EEF+ FG G+I +L+++ G+ G GF+NY + A KAI N +
Sbjct: 14 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT 71
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 51.2 bits (122), Expect = 4e-09
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDA-QLLKNADGKLKGCGFINYANKISAVKAILK 92
+LFI LP + +++ KE +G + + +A G KG F Y + +AI
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAG 62
Query: 93 SNKKPYKGK 101
N K
Sbjct: 63 LNGMQLGDK 71
Score = 33.5 bits (76), Expect = 0.007
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 102 ITEEEFKEHFGQYGDIIDA-QLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+ +++ KE +G + + +A G KG F Y + +AI N
Sbjct: 13 LNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD 70
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 50.8 bits (121), Expect = 5e-09
Identities = 21/73 (28%), Positives = 40/73 (54%), Gaps = 3/73 (4%)
Query: 25 KKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANK 83
K+P++ ++ LFI L F+ T+E + HF Q+G + D ++++ + + +G GF+ YA
Sbjct: 1 KEPEQLRK--LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATV 58
Query: 84 ISAVKAILKSNKK 96
A+ K
Sbjct: 59 EEVDAAMNARPHK 71
Score = 32.3 bits (73), Expect = 0.016
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKSNKK 154
+ T+E + HF Q+G + D ++++ + + +G GF+ YA A+ K
Sbjct: 17 ETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNARPHK 71
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 50.8 bits (121), Expect = 7e-09
Identities = 12/88 (13%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 15 KKKGKKKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADG-KLK 73
K ++ ++ P++ +F L +I + ++ F G + D +++ + + + K
Sbjct: 1 KSPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 60
Query: 74 GCGFINYANKISAVKAILKSNKKPYKGK 101
G ++ + +V + + G
Sbjct: 61 GIAYVEFCEI-QSVPLAIGLTGQRLLGV 87
Score = 30.8 bits (69), Expect = 0.087
Identities = 9/55 (16%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADG-KLKGCGFINYANKISAVKAILKSNKK 154
+I + ++ F G + D +++ + + + KG ++ + S AI + ++
Sbjct: 29 RIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAIGLTGQR 83
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 51.2 bits (122), Expect = 7e-09
Identities = 12/64 (18%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
R+ ++NL + +T + + F ++G ++ + + YA+ +SA A L
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSL 65
Query: 94 NKKP 97
+ +
Sbjct: 66 DGQN 69
Score = 35.0 bits (80), Expect = 0.003
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKP 155
+T + + F ++G ++ + + YA+ +SA A L + +
Sbjct: 19 VTLDVLHQIFSKFGTVLKIITFTK---NNQFQALLQYADPVSAQHAKLSLDGQN 69
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 50.0 bits (119), Expect = 9e-09
Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
++FI L + T+++ K++F ++G+++D L + +G GF+ + S K +
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-D 59
Query: 93 SNKKPYKGKI 102
+ GK+
Sbjct: 60 QKEHKLNGKV 69
Score = 33.0 bits (75), Expect = 0.008
Identities = 12/55 (21%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSNKK 154
T+++ K++F ++G+++D L + +G GF+ + S K + + K
Sbjct: 10 DTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQKEHK 64
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 49.6 bits (118), Expect = 1e-08
Identities = 13/64 (20%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILK 92
++F+ L EE+ +E+FG +G++ +L + + FI + + K + K
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK 60
Query: 93 SNKK 96
Sbjct: 61 KYHN 64
Score = 33.4 bits (76), Expect = 0.005
Identities = 11/54 (20%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILKSNKK 154
EE+ +E+FG +G++ +L + + FI + + K + K
Sbjct: 11 TPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKKYHN 64
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 50.1 bits (119), Expect = 1e-08
Identities = 20/70 (28%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAIL 91
GRLF++NL + +EE+ ++ F YG + + ++ K KG F+ + AVKA
Sbjct: 9 GRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYA 68
Query: 92 KSNKKPYKGK 101
+ + + ++G+
Sbjct: 69 EVDGQVFQGR 78
Score = 30.5 bits (68), Expect = 0.12
Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSNKKPYKG 158
+EE+ ++ F YG + + ++ K KG F+ + AVKA + + + ++G
Sbjct: 19 TSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG 77
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 49.7 bits (118), Expect = 1e-08
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDA-QLLKNADGKLKGCGFINYANKI 84
KP T + ++N+PF ++ +E + F Y I + L N G G + + ++
Sbjct: 6 KPGPTI---IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRD 62
Query: 85 SAVKAILKSNKKPYKGK 101
A A++ N +P +
Sbjct: 63 EATAAVIDLNDRPIGSR 79
Score = 32.3 bits (73), Expect = 0.018
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
Query: 102 ITEEEFKEHFGQYGDIIDA-QLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
++ +E + F Y I + L N G G + + ++ A A++ N +P
Sbjct: 21 VSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS 78
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 49.7 bits (118), Expect = 2e-08
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 8/81 (9%)
Query: 25 KKPDKTKRGR----LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINY 80
+ P +K+ R L KNL F ITE+E KE F +I DGK KG +I +
Sbjct: 5 EDPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQ----DGKSKGIAYIEF 60
Query: 81 ANKISAVKAILKSNKKPYKGK 101
++ A K + + G+
Sbjct: 61 KSEADAEKNLEEKQGAEIDGR 81
Score = 32.3 bits (73), Expect = 0.025
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
ITE+E KE F +I DGK KG +I + ++ A K + + G
Sbjct: 27 NITEDELKEVFEDALEIRLVSQ----DGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG 80
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 49.3 bits (117), Expect = 2e-08
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 1/74 (1%)
Query: 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAV 87
D + L++ NL +TE + F Q G +++ F+ + A
Sbjct: 4 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE-HTSNDPYCFVEFYEHRDAA 62
Query: 88 KAILKSNKKPYKGK 101
A+ N + GK
Sbjct: 63 AALAAMNGRKILGK 76
Score = 33.1 bits (75), Expect = 0.011
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 1/58 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+TE + F Q G +++ F+ + A A+ N + G
Sbjct: 19 DVTEVLILQLFSQIGPCKSCKMITE-HTSNDPYCFVEFYEHRDAAAALAAMNGRKILG 75
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 49.2 bits (117), Expect = 2e-08
Identities = 20/73 (27%), Positives = 39/73 (53%), Gaps = 3/73 (4%)
Query: 24 RKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYAN 82
++ KT L + LP+K TE++ KE+F +G+++ Q+ K+ KG GF+ +
Sbjct: 2 KRAVQKTSD--LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTE 59
Query: 83 KISAVKAILKSNK 95
+ VK + + +
Sbjct: 60 YETQVKVMSQRHM 72
Score = 32.6 bits (74), Expect = 0.013
Identities = 14/53 (26%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSNK 153
TE++ KE+F +G+++ Q+ K+ KG GF+ + + VK + + +
Sbjct: 20 TTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQRHM 72
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 48.9 bits (116), Expect = 3e-08
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Query: 29 KTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAV 87
TKR L++ L ++ ++ F +GDI D Q+ + + + +G F+ + A
Sbjct: 3 TTKR-VLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61
Query: 88 KAILKSNKKPYKGK 101
AI N+ G+
Sbjct: 62 AAIDNMNESELFGR 75
Score = 31.6 bits (71), Expect = 0.039
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSNKKPYKG 158
++ ++ F +GDI D Q+ + + + +G F+ + A AI N+ G
Sbjct: 16 EVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG 74
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 48.9 bits (116), Expect = 3e-08
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 15 KKKGKKKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIID-AQLLKNADGKLK 73
+ G +++ P+ LFI +LP + +++ + F +G+++ + K
Sbjct: 4 QSIGAAGSQKEGPEGAN---LFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 60
Query: 74 GCGFINYANKISAVKAILKSNKKPYKGK 101
GF++Y N +SA AI N K
Sbjct: 61 CFGFVSYDNPVSAQAAIQSMNGFQIGMK 88
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 47.8 bits (113), Expect = 6e-08
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 5/63 (7%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
+L+I NL +T ++ ++ FG + Q+ G F++Y ++ A++AI
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQV-----LLKSGYAFVDYPDQNWAIRAIETL 57
Query: 94 NKK 96
+ K
Sbjct: 58 SGK 60
Score = 32.0 bits (72), Expect = 0.021
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 154
+T ++ ++ FG + Q+ G F++Y ++ A++AI + K
Sbjct: 13 VTADDLRQLFGDRKLPLAGQV-----LLKSGYAFVDYPDQNWAIRAIETLSGK 60
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 47.3 bits (112), Expect = 9e-08
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 5/72 (6%)
Query: 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
+ L+++NL +EE ++ F ++ K++ F++++N+ AV+A
Sbjct: 6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERV-----KKIRDYAFVHFSNREDAVEA 60
Query: 90 ILKSNKKPYKGK 101
+ N K G
Sbjct: 61 MKALNGKVLDGS 72
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 47.9 bits (113), Expect = 9e-08
Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 10/74 (13%)
Query: 34 RLFIKNLPFKITEE-----EFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVK 88
L + E +F+ F Y Q K+ IN++N +SA
Sbjct: 7 GLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAAD 61
Query: 89 AILKSNKKPYKGKI 102
A L+ +K + GK
Sbjct: 62 ARLRLHKTEFLGKE 75
Score = 39.0 bits (90), Expect = 1e-04
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)
Query: 94 NKKPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153
N + T +F+ F Y Q K+ IN++N +SA A L+ +K
Sbjct: 14 NDDVFSESETRAKFESLFRTYDKDTTFQYFKS-----FKRVRINFSNPLSAADARLRLHK 68
Query: 154 KPYKG 158
+ G
Sbjct: 69 TEFLG 73
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 47.8 bits (113), Expect = 9e-08
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 3/69 (4%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDI---IDAQLLKNADGKLKGCGFINYANKISAVKAI 90
RLFI +P EE E + + + K +G F+ Y + +A A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMAR 62
Query: 91 LKSNKKPYK 99
K +
Sbjct: 63 RKLMPGRIQ 71
Score = 31.2 bits (70), Expect = 0.052
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 102 ITEEEFKEHFGQYGDI---IDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYK 157
EE E + + + K +G F+ Y + +A A K +
Sbjct: 13 KKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQ 71
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.3 bits (112), Expect = 9e-08
Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Query: 24 RKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYAN 82
R+ D + + NL E + +E F +G I L K+ G+ KG FI++
Sbjct: 3 RRADDNAT---IRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHR 59
Query: 83 KISAVKAILKSNKKPYKGKI 102
+ A +AI + Y I
Sbjct: 60 REDAARAIAGVSGFGYDHLI 79
Score = 30.0 bits (67), Expect = 0.14
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKN-ADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
E + +E F +G I L K+ G+ KG FI++ + A +AI + Y
Sbjct: 19 DTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH 77
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 46.7 bits (110), Expect = 2e-07
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 33 GRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGK-LKGCGFINYANKISAVKAIL 91
G+LF+ L F E+ ++ F +YG I + ++K+ + + +G GF+ + N A A++
Sbjct: 6 GKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMM 65
Query: 92 KSNKKPYKGK 101
N K G+
Sbjct: 66 AMNGKSVDGR 75
Score = 27.4 bits (60), Expect = 1.1
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGK-LKGCGFINYANKISAVKAILKSNKKPYKG 158
E+ ++ F +YG I + ++K+ + + +G GF+ + N A A++ N K G
Sbjct: 17 TNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG 74
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 46.6 bits (110), Expect = 2e-07
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 10/80 (12%)
Query: 26 KPDKTKRGRLFIKNLPFKITEEEFKEH----FGQYGDIIDAQLLKNADGKLKGCGFINYA 81
+P+ T ++I NL KI ++E K+ F ++G I+D + ++ +G F+ +
Sbjct: 1 RPNHT----IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKM--RGQAFVIFK 54
Query: 82 NKISAVKAILKSNKKPYKGK 101
SA A+ P+ K
Sbjct: 55 EVSSATNALRSMQGFPFYDK 74
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 47.0 bits (111), Expect = 2e-07
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 1/78 (1%)
Query: 24 RKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANK 83
+ P F+ NLP+ +TEE KE F + ++ +
Sbjct: 8 SRLPKSPPY-TAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFED 66
Query: 84 ISAVKAILKSNKKPYKGK 101
+ ++ + L N++ K
Sbjct: 67 LDSLLSALSLNEESLGNK 84
Score = 28.9 bits (64), Expect = 0.43
Identities = 8/58 (13%), Positives = 19/58 (32%)
Query: 101 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+TEE KE F + ++ + + ++ + L N++
Sbjct: 26 DVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSALSLNEESLGN 83
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 46.3 bits (109), Expect = 2e-07
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
Query: 28 DKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAV 87
+ K ++IK P T ++ KE G +++ Q+ + KG F+ + + SA
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAK 61
Query: 88 KAILKSNKKPYKGKITEEEFKE 109
K + ++ + YK FK+
Sbjct: 62 KFV-ETPGQKYKETDLLILFKD 82
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 46.3 bits (109), Expect = 2e-07
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 2/77 (2%)
Query: 27 PDKTKRGR-LFIKNLPFKITEEEFKEHFGQYGDII-DAQLLKNADGKLKGCGFINYANKI 84
P ++ G LF+ ++ + E+E +E F YG+I L G KG + Y
Sbjct: 1 PQRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHK 60
Query: 85 SAVKAILKSNKKPYKGK 101
A+ A N G+
Sbjct: 61 QALAAKEALNGAEIMGQ 77
Score = 28.5 bits (63), Expect = 0.40
Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)
Query: 101 KITEEEFKEHFGQYGDII-DAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+ E+E +E F YG+I L G KG + Y A+ A N G
Sbjct: 18 EAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG 76
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 46.3 bits (109), Expect = 3e-07
Identities = 14/84 (16%), Positives = 34/84 (40%), Gaps = 9/84 (10%)
Query: 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN---------ADGKLKGCGF 77
+ + ++++ L +T ++ + F Q G + + GK KG
Sbjct: 3 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDAT 62
Query: 78 INYANKISAVKAILKSNKKPYKGK 101
++Y + +A A+ + K ++G
Sbjct: 63 VSYEDPPTAKAAVEWFDGKDFQGS 86
Score = 28.2 bits (62), Expect = 0.68
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKN---------ADGKLKGCGFINYANKISAVKAILKSN 152
+T ++ + F Q G + + GK KG ++Y + +A A+ +
Sbjct: 20 VTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFD 79
Query: 153 KKPYKG 158
K ++G
Sbjct: 80 GKDFQG 85
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 46.3 bits (109), Expect = 4e-07
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 22 IERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADG-KLKGCGFINY 80
+ + D T ++F+ LP+ T+ +++F +GDI +A ++ + K +G GF+
Sbjct: 1 MHGSQKDTTFT-KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTM 59
Query: 81 ANKISAVKAILKSNKK 96
A++ +A +A N
Sbjct: 60 ADRAAAERACKDPNPI 75
Score = 28.9 bits (64), Expect = 0.42
Identities = 14/54 (25%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADG-KLKGCGFINYANKISAVKAILKSNKK 154
T+ +++F +GDI +A ++ + K +G GF+ A++ +A +A N
Sbjct: 22 TTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNPI 75
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 45.8 bits (108), Expect = 4e-07
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
+F+ +TE+E +E F QYGD++D + K F+ +A+ A
Sbjct: 7 GVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR----AFAFVTFADDQIAQSLC--G 60
Query: 94 NKKPYKGK 101
KG
Sbjct: 61 EDLIIKGI 68
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 45.1 bits (106), Expect = 4e-07
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILK 92
++F+ L T E+ K +F Q+G + DA L+ + +G GF+ + ++ K +
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-E 59
Query: 93 SNKKPYKGK 101
+ K
Sbjct: 60 IHFHEINNK 68
Score = 27.8 bits (61), Expect = 0.66
Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFINYANKISAVKAILKSNKK 154
T E+ K +F Q+G + DA L+ + +G GF+ + ++ K +
Sbjct: 11 TTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIHFHE 64
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 44.0 bits (103), Expect = 1e-06
Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 1/69 (1%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDII-DAQLLKNADGKLKGCGFINYANKISAVKAILK 92
L++ N P T+ ++ + +L + +I+ +K A + K
Sbjct: 3 TLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEK 62
Query: 93 SNKKPYKGK 101
N +G
Sbjct: 63 LNGLKIEGY 71
Score = 28.2 bits (62), Expect = 0.53
Identities = 8/59 (13%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 101 KITEEEFKEHFGQYGDII-DAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
T+ ++ + +L + +I+ +K A + K N +G
Sbjct: 12 SYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG 70
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 44.0 bits (103), Expect = 1e-06
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 6/68 (8%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
+ +KNLP +E + Y F+ N A AI
Sbjct: 7 GILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNK------RTAFVTLLNGEQAQNAIQMF 60
Query: 94 NKKPYKGK 101
++ ++GK
Sbjct: 61 HQYSFRGK 68
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 44.2 bits (103), Expect = 1e-06
Identities = 15/79 (18%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 18 GKKKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGF 77
G +E + LFI NL + E K + D ++ G + G+
Sbjct: 1 GSHMVEGSESTTPFN--LFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGY 58
Query: 78 INYANKISAVKAILKSNKK 96
+++ + KA+ + K
Sbjct: 59 VDFESAEDLEKALELTGLK 77
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 43.6 bits (102), Expect = 3e-06
Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Query: 15 KKKGKKKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKG 74
K G + K+ ++ L+I NLP + E+E + +G +I ++L+++ G +G
Sbjct: 2 KASGVQAQMAKQQEQDPT-NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRG 60
Query: 75 CGFINYANKISAVKAILKSNKKPYKGK 101
GF + I N K K
Sbjct: 61 VGFARMESTEKCEAVIGHFNGKFIKTP 87
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 44.1 bits (103), Expect = 3e-06
Identities = 19/98 (19%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 5 AKKKKVKKEFKKKGKKKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQL 64
A+ ++++++ ++ +PD + L + +P + E + ++ F +YG I ++
Sbjct: 17 AQLQQLQQQQQQHIPPTQMNPEPDVLRN--LMVNYIPTTVDEVQLRQLFERYGPIESVKI 74
Query: 65 LKNADG-KLKGCGFINYANKISAVKAILKSNKKPYKGK 101
+ + + + +G GF+ + + SA +AI N K
Sbjct: 75 VCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 42.9 bits (100), Expect = 4e-06
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 31 KRGRLFIKNLPFKITEEE---FKEHFGQYGDIIDAQLLKNADGK----LKGCGFINYANK 83
++ +F+ L ++ + E E+FG++G I + + ++ Y
Sbjct: 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRS 66
Query: 84 ISAVKAILKSNKKPYKGKI 102
A++AI N G+
Sbjct: 67 EDALRAIQCVNNVVVDGRT 85
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 42.4 bits (99), Expect = 4e-06
Identities = 15/69 (21%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNAD-GKLKGCGFINYANKISAVKAILKS 93
L+I+ L T+++ + YG I+ + + + K KG GF+++ + +A KA+
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 94 NKKPYKGKI 102
+ ++
Sbjct: 61 KASGVQAQM 69
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 42.7 bits (100), Expect = 5e-06
Identities = 18/81 (22%), Positives = 28/81 (34%), Gaps = 7/81 (8%)
Query: 21 KIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINY 80
KI K + T R L++ L + F ++G I +K +I Y
Sbjct: 8 KIGYGKANPTTR--LWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS-----FAYIQY 60
Query: 81 ANKISAVKAILKSNKKPYKGK 101
+ +A A K P G
Sbjct: 61 ESLDAAQAACAKMRGFPLGGP 81
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 42.9 bits (100), Expect = 6e-06
Identities = 19/79 (24%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 25 KKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDA-QLLKNADGKLKGCGFINYANK 83
PD G + ++ LPF ++EE + F + + L + G+ G F+ +A++
Sbjct: 8 NSPDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQ 67
Query: 84 ISAVKAILKSNKKPYKGKI 102
A KA+ K ++ I
Sbjct: 68 EIAEKALKKHKERIGHRYI 86
Score = 26.7 bits (58), Expect = 2.1
Identities = 13/59 (22%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 97 PYKGKITEEEFKEHFGQYGDIIDA-QLLKNADGKLKGCGFINYANKISAVKAILKSNKK 154
P+ ++EE + F + + L + G+ G F+ +A++ A KA+ K ++
Sbjct: 24 PFG--CSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKKHKER 80
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 42.5 bits (99), Expect = 7e-06
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 27 PDKTKRGR-LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLK-GCGFINYANKI 84
P G+ +FI+NL F EE E Q+GD+ +++ + D + GC F + +
Sbjct: 2 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQE 61
Query: 85 SAVKAILKSNKKPYKGKIT 103
+A K + ++ + G +
Sbjct: 62 AAQKCLAAASLEAEGGGLK 80
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 42.1 bits (98), Expect = 9e-06
Identities = 22/77 (28%), Positives = 43/77 (55%), Gaps = 2/77 (2%)
Query: 26 KPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDA-QLLKNADGKLKGCGFINYANKI 84
D++ R +F+ N+P++ TEE+ K+ F + G ++ + GK KG GF Y ++
Sbjct: 3 AVDRSLR-SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQE 61
Query: 85 SAVKAILKSNKKPYKGK 101
+A+ A+ N + + G+
Sbjct: 62 TALSAMRNLNGREFSGR 78
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 41.3 bits (96), Expect = 2e-05
Identities = 9/64 (14%), Positives = 23/64 (35%), Gaps = 5/64 (7%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+ ++ L + E + E ++G I ++ + + N SA + + +
Sbjct: 18 VHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR-----QALVEFENIDSAKECVTFAA 72
Query: 95 KKPY 98
P
Sbjct: 73 DVPV 76
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 41.0 bits (95), Expect = 2e-05
Identities = 18/87 (20%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDA-QLLKNADGKLKGCGFINYANKISAVK 88
+ + I N+PF IT+ + + +A +L + +G+ G + + N+ A K
Sbjct: 6 SAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARK 65
Query: 89 AILKSNKKPYKG------KITEEEFKE 109
+ + ++K G +T E+ +E
Sbjct: 66 SE-RLHRKKLNGREAFVHVVTLEDMRE 91
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 40.1 bits (93), Expect = 3e-05
Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 2/69 (2%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGC-GFINYANKISAVKAILK 92
++F+ + E +++F QYG I +++ + K F+ + + +V I+
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDH-DSVDKIVI 62
Query: 93 SNKKPYKGK 101
G
Sbjct: 63 QKYHTVNGH 71
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 39.5 bits (91), Expect = 4e-05
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+ I+ LP +T +E + Y K KG F+ N A AI +
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDYELKYC------FVDKYKGTAFVTLLNGEQAEAAINTFH 54
Query: 95 KKPYKGKITEEEFKEH 110
+ + + + +
Sbjct: 55 QSRLRERELSVQLQPT 70
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 40.1 bits (93), Expect = 4e-05
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISA 86
P + R+ + LP + ++ K+H + GD+ A + K+ G G + Y K
Sbjct: 10 PTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKD------GMGMVEYLRKEDM 63
Query: 87 VKAILKSNKKPYKGK 101
A+ K + ++
Sbjct: 64 EYALRKLDDTKFRSH 78
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 39.4 bits (91), Expect = 4e-05
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+ +KNLP + + ++F G II + + I +A A+ AI K++
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKN-FRFARIEFARYDGALAAITKTH 61
Query: 95 KK 96
K
Sbjct: 62 KV 63
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 39.9 bits (93), Expect = 6e-05
Identities = 13/102 (12%), Positives = 32/102 (31%), Gaps = 18/102 (17%)
Query: 24 RKKPDKTKRGRLFIKNL-----------PFKITEEEFKEHFGQYGDIIDAQLLKNADGKL 72
R + ++ + IKN+ E+ + ++G I D
Sbjct: 4 RMRHERV----VIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKL---LLFDRHP 56
Query: 73 KGCGFINYANKISAVKAILKSNKKPYKGKITEEEFKEHFGQY 114
G +++ + A I + + + G+ + + Y
Sbjct: 57 DGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDY 98
Score = 34.9 bits (80), Expect = 0.003
Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 3/55 (5%)
Query: 104 EEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
E+ + ++G I D G +++ + A I + + + G
Sbjct: 33 REDLRVECSKFGQIRKL---LLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 84
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 39.3 bits (91), Expect = 8e-05
Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 5/67 (7%)
Query: 30 TKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKA 89
T+ + L ++ + + G + + N F Y + +A
Sbjct: 18 TQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP-----YSFARYRTTEESKRA 72
Query: 90 ILKSNKK 96
+ N K
Sbjct: 73 YVTLNGK 79
Score = 30.8 bits (69), Expect = 0.071
Identities = 7/53 (13%), Positives = 16/53 (30%), Gaps = 5/53 (9%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKK 154
++ + + G + + N F Y + +A + N K
Sbjct: 32 VSRNQLLPVLEKCGLVDALLMPPNKP-----YSFARYRTTEESKRAYVTLNGK 79
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 38.6 bits (89), Expect = 1e-04
Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 3/63 (4%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
L + N+P ++EE+ K F G ++ K + I + AV+A++ +
Sbjct: 13 LHLSNIPPSVSEEDLKVLFSSNGGVVKG---FKFFQKDRKMALIQMGSVEEAVQALIDLH 69
Query: 95 KKP 97
Sbjct: 70 NHD 72
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 38.1 bits (88), Expect = 1e-04
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 7/68 (10%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
L++ +T + F +G+IID + + C F+ Y SA +A+ +
Sbjct: 7 TLYVYGED--MTPTLLRGAFSPFGNIIDLSMDPP-----RNCAFVTYEKMESADQAVAEL 59
Query: 94 NKKPYKGK 101
N +
Sbjct: 60 NGTQVESV 67
Score = 31.1 bits (70), Expect = 0.039
Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 102 ITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKG 158
+T + F +G+IID + + C F+ Y SA +A+ + N +
Sbjct: 15 MTPTLLRGAFSPFGNIIDLSMDPP-----RNCAFVTYEKMESADQAVAELNGTQVES 66
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 38.6 bits (89), Expect = 2e-04
Identities = 11/68 (16%), Positives = 23/68 (33%), Gaps = 6/68 (8%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKIS-AVKAILKS 93
F +L + E+ F +G+I ++ G I + K A+ +
Sbjct: 14 KFSGDLDDQTCREDLHILFSNHGEIKWIDFVRG-----AKEGIILFKEKAKEALGKAKDA 68
Query: 94 NKKPYKGK 101
N + +
Sbjct: 69 NNGNLQLR 76
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 111
Score = 38.0 bits (87), Expect = 3e-04
Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 5/73 (6%)
Query: 35 LFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSN 94
+ KNLP E +E F ++G + + + + + A KA
Sbjct: 13 ILAKNLPAGTLAAEIQETFSRFGSLGRVL-----LPEGGITAIVEFLEPLEARKAFRHLA 67
Query: 95 KKPYKGKITEEEF 107
+ E+
Sbjct: 68 YSKFHHVPLYLEW 80
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 37.2 bits (85), Expect = 4e-04
Identities = 13/68 (19%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
R+ + LP + ++ K+H + GD+ A + ++ G G + + K A+ K
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------GTGVVEFVRKEDMTYAVRKL 55
Query: 94 NKKPYKGK 101
+ ++
Sbjct: 56 DNTKFRSH 63
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 37.0 bits (85), Expect = 7e-04
Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Query: 25 KKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKI 84
T + ++ LP++ TE + F + DG++ G + +A
Sbjct: 8 SSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHI-EIGPDGRVTGEADVEFATHE 66
Query: 85 SAVKAILKSNKK 96
AV A+ K
Sbjct: 67 DAVAAMAKDKAN 78
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 36.7 bits (84), Expect = 7e-04
Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 5/83 (6%)
Query: 20 KKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKL-KGCGFI 78
+P+K L++KNL ++TE + F ++ + + +G FI
Sbjct: 10 SSYNPGEPNKV----LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFI 65
Query: 79 NYANKISAVKAILKSNKKPYKGK 101
+ NK A +A+ N GK
Sbjct: 66 TFPNKEIAWQALHLVNGYKLYGK 88
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 36.7 bits (84), Expect = 9e-04
Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 5/78 (6%)
Query: 34 RLFIKNL-PFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILK 92
L + NL P ++T + FG YGD+ ++L N + A+ A A+
Sbjct: 4 VLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK----ENALVQMADGNQAQLAMSH 59
Query: 93 SNKKPYKGKITEEEFKEH 110
N GK +H
Sbjct: 60 LNGHKLHGKPIRITLSKH 77
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 35.1 bits (80), Expect = 0.002
Identities = 16/74 (21%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 31 KRGRLFIKNLPFKITEEE-FKEHFGQYGDIIDAQLLKNADG--KLKGCGFINYANKISAV 87
+ + I+NL ++ +E +E F +G I + C F+ + NK SA
Sbjct: 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 62
Query: 88 KAILKSNKKPYKGK 101
+A+ + N+ +
Sbjct: 63 RAL-QMNRSLLGNR 75
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 33.8 bits (77), Expect = 0.005
Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 36 FIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 95
+ P F QYG+I+ + I Y +K+ A KA+ K +
Sbjct: 8 TVFGFPQASASYILL-QFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALSKDGR 61
Score = 29.5 bits (66), Expect = 0.17
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 5/51 (9%)
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 153
+ F QYG+I+ + I Y +K+ A KA+ K +
Sbjct: 16 SASYILLQFAQYGNILKHVMSNT-----GNWMHIRYQSKLQARKALSKDGR 61
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 32.5 bits (73), Expect = 0.019
Identities = 13/65 (20%), Positives = 27/65 (41%), Gaps = 5/65 (7%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
L I+ LP ++TE E +G + + +LK + F+ A + +A+ +
Sbjct: 10 VLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN-----QAFLELATEEAAITMVNYY 64
Query: 94 NKKPY 98
+
Sbjct: 65 SAVTP 69
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 30.6 bits (68), Expect = 0.066
Identities = 11/71 (15%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 27 PDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISA 86
P++ LF+ NLP + E F Q+ + F+ + ++ +
Sbjct: 7 PNQI----LFLTNLPEETNEMMLSMLFNQFPGFKE----VRLVPNRHDIAFVEFTTELQS 58
Query: 87 VKAILKSNKKP 97
A
Sbjct: 59 NAAKEALQGFK 69
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 30.4 bits (68), Expect = 0.097
Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 15/84 (17%)
Query: 16 KKGKKKIERKKPDKTKRGRLFIKNLPF-KITEEEFKEHFGQYGDIIDAQLLKNADGKLKG 74
+KG+ + R + I + K + + +G I + +L +
Sbjct: 1 QKGRVETRRV---------VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN----- 46
Query: 75 CGFINYANKISAVKAILKSNKKPY 98
FI A A A+ P
Sbjct: 47 EAFIEMATTEDAQAAVDYYTTTPA 70
Score = 27.0 bits (59), Expect = 1.6
Identities = 11/58 (18%), Positives = 19/58 (32%), Gaps = 5/58 (8%)
Query: 99 KGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 156
+GK + + +G I + +L + FI A A A+ P
Sbjct: 18 RGKNLRYQLLQLVEPFGVISNHLILNKIN-----EAFIEMATTEDAQAAVDYYTTTPA 70
>gi|134310692|gb|EBA55606.1|(1-172:250) hypothetical protein
GOS_8779 [marine metagenome] E=1e-09 s/c=0.40 id=31%
cov=30%
Length = 159
Score = 30.2 bits (68), Expect = 0.31
Identities = 9/52 (17%), Positives = 13/52 (25%), Gaps = 9/52 (17%)
Query: 220 NVFPHHGY--IWNYGALPQTWENPDETDAHTGQKGDGDPIDVLEIGERIAKR 269
GY IWN W + D + G +A+
Sbjct: 111 AAHYVKGYNKIWN------RWYR-VPNNTDEIAVDSIPGDDAAKYGLPVARL 155
>d1qx2a_ a.39.1.1 (A:) Calbindin D9K {Cow (Bos taurus) [TaxId:
9913]}
Length = 76
Score = 28.0 bits (62), Expect = 0.58
Identities = 14/69 (20%), Positives = 28/69 (40%), Gaps = 10/69 (14%)
Query: 45 TEEEFKEHFGQYGDI------IDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPY 98
+ EE K F + I + LK ++ G + +S + +++ K
Sbjct: 3 SPEEIKGAFEVFAAKEGDPNQISKEELKLV---MQTLGP-SLLKGMSTLDEMIEEVDKNG 58
Query: 99 KGKITEEEF 107
G+++ EEF
Sbjct: 59 DGEVSFEEF 67
>d1vqoj1 c.21.1.1 (J:4-145) Ribosomal protein L13 {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 142
Score = 28.7 bits (64), Expect = 0.78
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 19 KKKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKN 67
K+ I P K +RGR +++ ++ + G+ D L N
Sbjct: 77 KRTIRGMLPHKKQRGREAFESV--RVYLGNPYDEDGEVLDGTSLDRLSN 123
>d1uw4a_ d.58.7.4 (A:) RNA processing protein UPF3x, RRM domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 91
Score = 27.4 bits (61), Expect = 1.2
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDI 59
++ I+ LP +T+E+ +EH +
Sbjct: 3 KVVIRRLPPTLTKEQLQEHLQPMPEH 28
>gi|94984680|ref|YP_604044.1|(2-62:67) 50S ribosomal protein L35
[Deinococcus geothermalis DSM 11300]
gi|145572732|sp|Q1J0V9.1|RL35_DEIGD RecName: Full=50S
ribosomal protein L35 gi|94554961|gb|ABF44875.1|
ribosomal protein L35 [Deinococcus geothermalis DSM
11300] E=4e-21 s/c=1.69 id=84% cov=98%
Length = 61
Score = 26.5 bits (59), Expect = 1.2
Identities = 9/42 (21%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 3 KLAKKKKVKKEFKKKGKKKIERKKPDK----TKRGRLFIKNL 40
K+ KK + + K K+ K K T + I+
Sbjct: 2 KMKTKKSMTRRVKVTATGKVMAFKSGKRHQNTGKSGDEIRGK 43
>d1ny4a_ b.40.4.5 (A:) Ribosomal protein S28e {Archaeon Pyrococcus
horikoshii [TaxId: 53953]}
Length = 71
Score = 25.7 bits (57), Expect = 2.6
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 253 DGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDP 301
+G P +V+EI R G++ QVK I EG+ ++I NV P
Sbjct: 5 EGYPAEVIEIIGRTGTTGDVTQVKV-----RILEGRDKGRVIRRNVRGP 48
>d2j0181 d.301.1.1 (8:2-65) Ribosomal protein L35p {Thermus
thermophilus [TaxId: 274]}
Length = 64
Score = 25.4 bits (56), Expect = 3.0
Identities = 9/42 (21%), Positives = 14/42 (33%), Gaps = 4/42 (9%)
Query: 3 KLAKKKKVKKEFKKKGKKKIERKKPDK----TKRGRLFIKNL 40
K+ K KK K K+ K K ++ I+
Sbjct: 2 KMKTHKGAKKRVKITASGKVVAMKTGKRHLNWQKSGKEIRQK 43
>d1vqza1 d.224.1.3 (A:242-329) LplA-like protein SP1160, C-terminal
domain {Streptococcus pneumoniae [TaxId: 1313]}
Length = 88
Score = 26.2 bits (58), Expect = 3.2
Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Query: 56 YGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS-NKKPYKGKITEEEFKE 109
YGD + + + L+G + + V LK+ + Y I+ EE E
Sbjct: 35 YGDFFGIEDVAAVEDVLRGVKY-----EREDVLKALKTIDITRYFAGISREEIAE 84
>d1rxta2 d.108.1.2 (A:219-455) N-myristoyl transferase, NMT {Human
(Homo sapiens) [TaxId: 9606]}
Length = 201
Score = 27.0 bits (60), Expect = 3.4
Identities = 19/85 (22%), Positives = 42/85 (49%), Gaps = 9/85 (10%)
Query: 1 MEKLAKKKKVKKEFKKKGKKKIERKKPDKTKRGRLFIKNLP-FKI----TEEEFKEHFGQ 55
M++ K ++ + K G + +E K + L + L F + ++EE + F
Sbjct: 25 MQRTMKLYRLPETPKTAGLRPMETKDIPVVHQ--LLTRYLKQFHLTPVMSQEEVEHWFYP 82
Query: 56 YGDIIDAQLLKNADGKLKGCGFINY 80
+IID +++NA+G++ F+++
Sbjct: 83 QENIIDTFVVENANGEVT--DFLSF 105
>d1juoa_ a.39.1.8 (A:) Sorcin {Human (Homo sapiens) [TaxId: 9606]}
Length = 172
Score = 27.0 bits (59), Expect = 3.6
Identities = 12/111 (10%), Positives = 36/111 (32%), Gaps = 3/111 (2%)
Query: 34 RLFIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKS 93
+ + + F + ++ + L ++ G + F ++ + S
Sbjct: 29 QRCLTQSGIAGGYKPFNLETCR---LMVSMLDRDMSGTMGFNEFKELWAVLNGWRQHFIS 85
Query: 94 NKKPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISA 144
G + +E ++ G + Q + + + G I + + I+
Sbjct: 86 FDTDRSGTVDPQELQKALTTMGFRLSPQAVNSIAKRYSTNGKITFDDYIAC 136
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId:
9606]}
Length = 165
Score = 26.9 bits (59), Expect = 3.8
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 3/110 (2%)
Query: 36 FIKNLPFKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNK 95
+ T F + +I A L ++ GK+ F ++A K +
Sbjct: 24 CLTQSGINGTYSPFSLETCR--IMI-AMLDRDHTGKMGFNAFKELWAALNAWKENFMTVD 80
Query: 96 KPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAV 145
+ G + E ++ G G + Q L + G I + + ++
Sbjct: 81 QDGSGTVEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACC 130
>d1mjta_ d.174.1.1 (A:) Nitric oxide (NO) synthase oxygenase domain
{Staphylococcus aureus [TaxId: 1280]}
Length = 346
Score = 27.4 bits (61), Expect = 4.2
Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 11/66 (16%)
Query: 206 IKQDIKKGNLRYVANVFPHHG--YIWN-----YGALPQTWE--NPDETDA--HTGQKGDG 254
I Q +G L+ ++ I+N Y + + T H G KG G
Sbjct: 93 ITQATNEGKLKPYITIYAPKDGPKIFNNQLIRYAGYDNCGDPAEKEVTRLANHLGWKGKG 152
Query: 255 DPIDVL 260
DVL
Sbjct: 153 TNFDVL 158
>d2qam31 d.301.1.1 (3:1-64) Ribosomal protein L35p {Escherichia
coli [TaxId: 562]}
Length = 64
Score = 25.0 bits (55), Expect = 4.2
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 3 KLAKKKKVKKEFKKKGKKKIERKKPDK 29
K+ + K FKK GK + K +
Sbjct: 2 KIKTVRGAAKRFKKTGKGGFKHKHANL 28
>d1ne3a_ b.40.4.5 (A:) Ribosomal protein S28e {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 68
Score = 25.0 bits (55), Expect = 4.7
Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 253 DGDPIDVLEIGERIAKRGEIIQVKALGVIGLIDEGQTDWKIIAINVNDP 301
D P +V+E+ +R GE++QVK ++ D+G +I+ NV P
Sbjct: 3 DATPAEVIEVLKRTGMTGEVMQVKCR-ILDGRDKG----RILTRNVMGP 46
>d2dp9a1 b.122.1.5 (A:1-120) Hypothetical protein TTHA0113
{Thermus thermophilus [TaxId: 274]}
Length = 120
Score = 26.0 bits (57), Expect = 5.4
Identities = 9/47 (19%), Positives = 16/47 (34%)
Query: 18 GKKKIERKKPDKTKRGRLFIKNLPFKITEEEFKEHFGQYGDIIDAQL 64
G+K E ++ RG L I + I + + G +
Sbjct: 21 GRKVWEIRRRKTRHRGPLGIVSGGRLIGQADLVGVEGPFSVEELLAH 67
>d1bjfa_ a.39.1.5 (A:) Neurocalcin {Cow (Bos taurus) [TaxId: 9913]}
Length = 181
Score = 26.3 bits (57), Expect = 5.5
Identities = 27/125 (21%), Positives = 42/125 (33%), Gaps = 2/125 (1%)
Query: 43 KITEEEFKEHFGQYGDIIDAQLLKNADGKLKGCGFINYANKISAVKAILKSNKKPYKGKI 102
TE E +E + + + L + K F Y + + + ++ G I
Sbjct: 17 DFTEHEIQEWYKGFLRDCPSGHLSMEEFKKIYGNFFPYGDASKFAEHVFRTFDANGDGTI 76
Query: 103 TEEEFKEHFGQYGDIIDAQLLKNA--DGKLKGCGFINYANKISAVKAILKSNKKPYKGSE 160
EF Q LK A L G G+I+ A + V+AI K K E
Sbjct: 77 DFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPE 136
Query: 161 NGLIS 165
+
Sbjct: 137 DESTP 141
>d2cqaa1 b.40.4.14 (A:8-89) RuvB-like 2 protein, RUVBL2 (TIP49b)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 24.7 bits (54), Expect = 8.9
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 92 KSNKKPYKGKITEEEFKEHFGQYGDIIDAQLLKNADGK 129
K + +G++ E + G + LK + +
Sbjct: 1 KEETEIIEGEVVEIQIDRPATGTGSKVGKLTLKTTEME 38
>d1h16a_ c.7.1.1 (A:) Pyruvate formate-lyase, PFL {Escherichia coli
[TaxId: 562]}
Length = 759
Score = 26.3 bits (58), Expect = 9.7
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 74 GCGFINYANKISAVKAILKSNKKPYKGKITEEEFKEHFGQYGDIID 119
G A+ +SA+K + G + E + + Q+G+
Sbjct: 526 IAGLSVAADSLSAIKYAKVKPIRDEDGLAIDFEIEGEYPQFGNNDP 571
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.137 0.406
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,794,668
Number of extensions: 91276
Number of successful extensions: 510
Number of sequences better than 10.0: 1
Number of HSP's gapped: 439
Number of HSP's successfully gapped: 183
Length of query: 451
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,199,356
Effective search space: 435366228
Effective search space used: 435366228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.2 bits)