BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3001
(602 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 105 bits (262), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 82/252 (32%), Positives = 127/252 (50%), Gaps = 28/252 (11%)
Query: 193 WPEKGEVE-FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
+P + EV F+D+ + G + +VG +G+GKS++ L R+ +PA GTI +DG DIR
Sbjct: 351 YPARPEVPIFQDFSLSIPSG-SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR 409
Query: 252 TLGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLII 311
L LRS++ + Q I C I ++ + D P +
Sbjct: 410 QLNPVWLRSKIGTVSQ--EPILFSCS------------------IAENIAYGAD-DPSSV 448
Query: 312 TPFCSNLQRFY-VATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKI 370
T +QR VA + R + + G ++G GQ+Q I +ARALL+ KI
Sbjct: 449 T--AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSG--GQKQRIAIARALLKNPKI 504
Query: 371 LILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430
L+LDEAT+A+D E + L+Q + TVL IAHRL+TI +++ V VLD+G + E+
Sbjct: 505 LLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGK 564
Query: 431 PSVLMKNKASIF 442
L+ I+
Sbjct: 565 HEELLSKPNGIY 576
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
LS+ +VG +G+GKS++ L R+ +PA GTI +DG DIR L LRS++ +
Sbjct: 365 LSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVS 424
Query: 547 QDPVLFSGTLRLNL-----DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
Q+P+LFS ++ N+ DP +++E I + E+A+ F+ N P V E G
Sbjct: 425 QEPILFSCSIAENIAYGADDPSSVTAEE-IQRVAEVANAVAFIRNFPQGFNTVVGEKG 481
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 92 KRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLSVQQTLSQPFKITQTL 151
RL L S+LR FFD T G +++R SSD L +T ++ L + + +
Sbjct: 95 NRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGI 154
Query: 152 NWLVRMTSDVETNIVAV 168
+ + ++ ++ T +++V
Sbjct: 155 SMMFFVSPNLATFVLSV 171
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 103 bits (258), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 126/252 (50%), Gaps = 28/252 (11%)
Query: 193 WPEKGEVE-FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
+P + EV F+D+ + G + +VG +G+GKS++ L R+ +PA GTI +DG DIR
Sbjct: 382 YPARPEVPIFQDFSLSIPSG-SVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIR 440
Query: 252 TLGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLII 311
L LRS++ + Q I C I ++ + D P +
Sbjct: 441 QLNPVWLRSKIGTVSQ--EPILFSCS------------------IAENIAYGAD-DPSSV 479
Query: 312 TPFCSNLQRFY-VATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKI 370
T +QR VA + R + + G ++G GQ+Q I +ARALL+ KI
Sbjct: 480 T--AEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSG--GQKQRIAIARALLKNPKI 535
Query: 371 LILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430
L+LDEAT+A+D E + L+Q + TVL IAH L+TI +++ V VLD+G + E+
Sbjct: 536 LLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGK 595
Query: 431 PSVLMKNKASIF 442
L+ I+
Sbjct: 596 HEELLSKPNGIY 607
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 66/118 (55%), Gaps = 6/118 (5%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
LS+ +VG +G+GKS++ L R+ +PA GTI +DG DIR L LRS++ +
Sbjct: 396 LSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVS 455
Query: 547 QDPVLFSGTLRLNL-----DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
Q+P+LFS ++ N+ DP +++E I + E+A+ F+ N P V E G
Sbjct: 456 QEPILFSCSIAENIAYGADDPSSVTAEE-IQRVAEVANAVAFIRNFPQGFNTVVGEKG 512
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 39/77 (50%)
Query: 92 KRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLSVQQTLSQPFKITQTL 151
RL L S+LR FFD T G +++R SSD L +T ++ L + + +
Sbjct: 126 NRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGI 185
Query: 152 NWLVRMTSDVETNIVAV 168
+ + ++ ++ T +++V
Sbjct: 186 SMMFFVSPNLATFVLSV 202
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 103 bits (257), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 85/307 (27%), Positives = 140/307 (45%), Gaps = 56/307 (18%)
Query: 141 LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVE 200
S F + + L L +TS+ + + A + + +G E E N K + GEV+
Sbjct: 288 FSAMFGLMRPLKALTSVTSEFQRGMAACQTL--FGLMDLETERDNGKYEAERV--NGEVD 343
Query: 201 FKD----YKVRYREGL----------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246
KD Y+ + + L + V +VGR+G+GKS++ R + G+I +D
Sbjct: 344 VKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403
Query: 247 GVDIRTLGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDV 306
G D+R L LR ++ Q + +F + +
Sbjct: 404 GHDVRDYKLTNLRRHFALVSQNVH------------------------------LFNDTI 433
Query: 307 KPLIITPFCSNLQRFYV-ATSRQLKRLESVSRSP-----IYSHFGETVTGNVGQRQLICL 360
I R + +RQ +E + P + G +++G GQRQ + +
Sbjct: 434 ANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG--GQRQRVAI 491
Query: 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL 420
ARALLR +LILDEAT+A+D E++ IQ+ + + TVL IAHRL+TI +D +LV+
Sbjct: 492 ARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVV 551
Query: 421 DKGLVVE 427
D+G ++E
Sbjct: 552 DEGEIIE 558
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 61/120 (50%), Gaps = 2/120 (1%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V S+ V +VGR+G+GKS++ R + G+I +DG D+R L LR +
Sbjct: 362 VSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFAL 421
Query: 545 IPQDPVLFSGTLRLNLDPV--GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ Q+ LF+ T+ N+ GE + E I +A AH F+ N+P L + E G +L
Sbjct: 422 VSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/260 (29%), Positives = 125/260 (48%), Gaps = 49/260 (18%)
Query: 188 KPKDEWPEKGEVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALF 233
K D WP G++ KD +Y EG + VG++GRTG+GKS+L A
Sbjct: 9 KKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFL 68
Query: 234 RIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLY 293
R++ +G I IDGV ++ L R +IPQ +F+
Sbjct: 69 RLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQ---KVFIF------------------ 106
Query: 294 FFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV- 352
S F +++ P S+ + + VA L+ + + + P F G V
Sbjct: 107 -----SGTFRKNLDP---NAAHSDQEIWKVADEVGLRSV--IEQFPGKLDFVLVDGGCVL 156
Query: 353 --GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNT 410
G +QL+CLAR++L K KIL+LDE +A +D T +I+ T++ FA CTV+ R+
Sbjct: 157 SHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEA 216
Query: 411 IIDSDRVLVLDKGLVVEFDS 430
+++ D+ LV+++ V ++DS
Sbjct: 217 MLECDQFLVIEENKVRQYDS 236
Score = 86.3 bits (212), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/115 (38%), Positives = 65/115 (56%), Gaps = 1/115 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ S+S +VG++GRTG+GKS+L A R++ +G I IDGV ++ L R +
Sbjct: 40 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGV 98
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
IPQ +FSGT R NLDP SD+ IWK + L + + P +L + +GG
Sbjct: 99 IPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGG 153
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 123/258 (47%), Gaps = 43/258 (16%)
Query: 193 WPEKGEVE-FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
+P + EV+ K ++ + G + V +VG +G GKS+ + R+ +P DG + IDG DIR
Sbjct: 397 YPSRKEVQILKGLNLKVKSG-QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR 455
Query: 252 TLGLHTLRSRLTII---PQVLATIFV--ICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDV 306
T+ + LR + ++ P + AT I Y EDV
Sbjct: 456 TINVRYLREIIGVVSQEPVLFATTIAENIRYGR------------------------EDV 491
Query: 307 KPLIITPFC--SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARAL 364
I +N F + Q L G ++G GQ+Q I +ARAL
Sbjct: 492 TMDEIEKAVKEANAYDFIMKLPHQFDTL--------VGERGAQLSG--GQKQRIAIARAL 541
Query: 365 LRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGL 424
+R KIL+LDEAT+A+D E++ ++Q+ + T + IAHRL+T+ ++D + D G+
Sbjct: 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGV 601
Query: 425 VVEFDSPSVLMKNKASIF 442
+VE + LM+ K F
Sbjct: 602 IVEQGNHDELMREKGIYF 619
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 26/233 (11%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
+ + +VG +G GKS++ L R +P G++ +DG +I+ L + LR++L I+ Q I
Sbjct: 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ--EPI 1117
Query: 273 FVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
C Y I K I F +L Y +R +
Sbjct: 1118 LFDCSIAENIAYGDNSRVVSYEEI------VRAAKEANIHQFIDSLPDKY--NTRVGDK- 1168
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
G ++G GQ+Q I +ARAL+R+ IL+LDEAT+A+D E++ ++Q +
Sbjct: 1169 ------------GTQLSG--GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1214
Query: 393 RSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445
T + IAHRL+TI ++D ++V+ G V E + L+ K I++SM
Sbjct: 1215 DKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKG-IYFSM 1266
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
L V V +VG +G GKS+ + R+ +P DG + IDG DIRT+ + LR + ++
Sbjct: 411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVS 470
Query: 547 QDPVLFSGTLRLNLDPVGE--SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
Q+PVLF+ T+ N+ E + DE I KA++ A+ F+ LP + V E G L
Sbjct: 471 QEPVLFATTIAENIRYGREDVTMDE-IEKAVKEANAYDFIMKLPHQFDTLVGERGAQL 527
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
L V + +VG +G GKS++ L R +P G++ +DG +I+ L + LR++L I+
Sbjct: 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVS 1113
Query: 547 QDPVLFSGTLRLNLDPVGESSD----EAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
Q+P+LF ++ N+ G++S E I +A + A+++ F+ +LP + V + G L
Sbjct: 1114 QEPILFDCSIAENI-AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 41 FSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTI---TVFFYGFVISLGTLFAAKRLHEK 97
FS+ V + P + + LFS+L+L+ I T F GF KRL
Sbjct: 728 FSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYM 787
Query: 98 LLKSMLRWSPLFFD--TTPVGRVLSRFSSD 125
+ KSMLR +FD G + +R ++D
Sbjct: 788 VFKSMLRQDVSWFDDPKNTTGALTTRLAND 817
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 118/242 (48%), Gaps = 36/242 (14%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ--VLA 270
E++GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ ++ Q VL
Sbjct: 30 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 89
Query: 271 TIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
+I +SL P S + Y A
Sbjct: 90 NRSIID--------------------NISLA----------NPGMSVEKVIYAAKLAGAH 119
Query: 331 RLESVSRSPIYSHFGETVTG-NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
S R + GE G + GQRQ I +ARAL+ KILI DEAT+A+D E++ +I
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 390 STIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF---YSMA 446
+ TV+ IAHRL+T+ ++DR++V++KG +VE L+ S++ Y +
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 447 KD 448
D
Sbjct: 240 SD 241
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ LS+ +GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ +
Sbjct: 22 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81
Query: 545 IPQDPVLFSGTL--RLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ QD VL + ++ ++L G S ++ I+ A +LA + F+S L V E G L
Sbjct: 82 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISELREGYNTIVGEQGAGL 140
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 77/258 (29%), Positives = 123/258 (47%), Gaps = 43/258 (16%)
Query: 193 WPEKGEVE-FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
+P + EV+ K ++ + G + V +VG +G GKS+ + R+ +P DG + IDG DIR
Sbjct: 397 YPSRKEVQILKGLNLKVKSG-QTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR 455
Query: 252 TLGLHTLRSRLTII---PQVLATIFV--ICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDV 306
T+ + LR + ++ P + AT I Y EDV
Sbjct: 456 TINVRYLREIIGVVSQEPVLFATTIAENIRYGR------------------------EDV 491
Query: 307 KPLIITPFC--SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARAL 364
I +N F + Q L G ++G GQ+Q I +ARAL
Sbjct: 492 TMDEIEKAVKEANAYDFIMKLPHQFDTL--------VGERGAQLSG--GQKQRIAIARAL 541
Query: 365 LRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGL 424
+R KIL+LDEAT+A+D E++ ++Q+ + T + IAHRL+T+ ++D + D G+
Sbjct: 542 VRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGV 601
Query: 425 VVEFDSPSVLMKNKASIF 442
+VE + LM+ K F
Sbjct: 602 IVEQGNHDELMREKGIYF 619
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/233 (29%), Positives = 113/233 (48%), Gaps = 26/233 (11%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
+ + +VG +G GKS++ L R +P G++ +DG +I+ L + LR++L I+ Q I
Sbjct: 1060 QTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ--EPI 1117
Query: 273 FVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
C Y I K I F +L Y +R +
Sbjct: 1118 LFDCSIAENIAYGDNSRVVSYEEI------VRAAKEANIHQFIDSLPDKY--NTRVGDK- 1168
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
G ++G GQ+Q I +ARAL+R+ IL+LDEAT+A+D E++ ++Q +
Sbjct: 1169 ------------GTQLSG--GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEAL 1214
Query: 393 RSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445
T + IAHRL+TI ++D ++V+ G V E + L+ K I++SM
Sbjct: 1215 DKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQKG-IYFSM 1266
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/118 (36%), Positives = 65/118 (55%), Gaps = 3/118 (2%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
L V V +VG +G GKS+ + R+ +P DG + IDG DIRT+ + LR + ++
Sbjct: 411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVS 470
Query: 547 QDPVLFSGTLRLNLDPVGE--SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
Q+PVLF+ T+ N+ E + DE I KA++ A+ F+ LP + V E G L
Sbjct: 471 QEPVLFATTIAENIRYGREDVTMDE-IEKAVKEANAYDFIMKLPHQFDTLVGERGAQL 527
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 68/120 (56%), Gaps = 5/120 (4%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
L V + +VG +G GKS++ L R +P G++ +DG +I+ L + LR++L I+
Sbjct: 1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVS 1113
Query: 547 QDPVLFSGTLRLNLDPVGESSD----EAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
Q+P+LF ++ N+ G++S E I +A + A+++ F+ +LP + V + G L
Sbjct: 1114 QEPILFDCSIAENI-AYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 5/90 (5%)
Query: 41 FSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTI---TVFFYGFVISLGTLFAAKRLHEK 97
FS+ V + P + + LFS+L+L+ I T F GF KRL
Sbjct: 728 FSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYM 787
Query: 98 LLKSMLRWSPLFFD--TTPVGRVLSRFSSD 125
+ KSMLR +FD G + +R ++D
Sbjct: 788 VFKSMLRQDVSWFDDPKNTTGALTTRLAND 817
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 118/242 (48%), Gaps = 36/242 (14%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ--VLA 270
E++GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ ++ Q VL
Sbjct: 36 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 95
Query: 271 TIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
+I +SL P S + Y A
Sbjct: 96 NRSIID--------------------NISLA----------NPGMSVEKVIYAAKLAGAH 125
Query: 331 RLESVSRSPIYSHFGETVTG-NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
S R + GE G + GQRQ I +ARAL+ KILI DEAT+A+D E++ +I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 390 STIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF---YSMA 446
+ TV+ IAHRL+T+ ++DR++V++KG +VE L+ S++ Y +
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Query: 447 KD 448
D
Sbjct: 246 SD 247
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ LS+ +GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ +
Sbjct: 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87
Query: 545 IPQDPVLFSGTL--RLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ QD VL + ++ ++L G S ++ I+ A +LA + F+S L V E G L
Sbjct: 88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISELREGYNTIVGEQGAGL 146
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 118/242 (48%), Gaps = 36/242 (14%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ--VLA 270
E++GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ ++ Q VL
Sbjct: 32 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 91
Query: 271 TIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
+I +SL P S + Y A
Sbjct: 92 NRSIID--------------------NISLA----------NPGMSVEKVIYAAKLAGAH 121
Query: 331 RLESVSRSPIYSHFGETVTG-NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
S R + GE G + GQRQ I +ARAL+ KILI DEAT+A+D E++ +I
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 390 STIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF---YSMA 446
+ TV+ IAHRL+T+ ++DR++V++KG +VE L+ S++ Y +
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 241
Query: 447 KD 448
D
Sbjct: 242 SD 243
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ LS+ +GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ +
Sbjct: 24 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 83
Query: 545 IPQDPVLFSGTL--RLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ QD VL + ++ ++L G S ++ I+ A +LA + F+S L V E G L
Sbjct: 84 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISELREGYNTIVGEQGAGL 142
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 85/298 (28%), Positives = 145/298 (48%), Gaps = 50/298 (16%)
Query: 154 LVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVE-FKDYKVRYREGL 212
++R S +++ +A E+ K YG+ V K + +PE+ E+E K G
Sbjct: 1054 MLRKISKIDSLSLAGEKKKLYGK-------VIFKNVRFAYPERPEIEILKGLSFSVEPG- 1105
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
+ + +VG +G GKS++ L R + G I IDG +I+TL RS++ I+ Q T+
Sbjct: 1106 QTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQE-PTL 1164
Query: 273 FVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
F I ++I+ D P +T +A + RL
Sbjct: 1165 FDCS-------------------IAENIIYGLD--PSSVT----------MAQVEEAARL 1193
Query: 333 ESVSR--SPIYSHFGETVTGNVG------QRQLICLARALLRKTKILILDEATAAIDLET 384
++ + + F ET G+ G Q+Q I +ARAL+R KIL+LDEAT+A+D E+
Sbjct: 1194 ANIHNFIAELPEGF-ETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTES 1252
Query: 385 DDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ ++Q + T + IAHRLNT++++D + V+ G ++E + + LM K + +
Sbjct: 1253 EKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAYY 1310
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 74/256 (28%), Positives = 123/256 (48%), Gaps = 34/256 (13%)
Query: 193 WPEKGEVE-FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
+P + +V + +R G + V +VG +G GKS++ L R + G I IDGVD+R
Sbjct: 425 YPSRPDVPILRGMNLRVNAG-QTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVR 483
Query: 252 TLGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLII 311
+ L LR + ++ Q A C +SL E + +
Sbjct: 484 DINLEFLRKNVAVVSQEPA--LFNCTIEE----------------NISL-GKEGITREEM 524
Query: 312 TPFC--SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTK 369
C +N ++F +K L + + + G ++G GQ+Q I +ARAL+R K
Sbjct: 525 VAACKMANAEKF-------IKTLPN-GYNTLVGDRGTQLSG--GQKQRIAIARALVRNPK 574
Query: 370 ILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFD 429
IL+LDEAT+A+D E++ ++Q + T + IAHRL+TI ++D ++ G VVE
Sbjct: 575 ILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVG 634
Query: 430 SPSVLMKNKASIFYSM 445
LM + ++Y +
Sbjct: 635 DHRALMAQQG-LYYDL 649
Score = 65.5 bits (158), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 61/119 (51%), Gaps = 1/119 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L V+ V +VG +G GKS++ L R + G I IDGVD+R + L LR + +
Sbjct: 437 MNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAV 496
Query: 545 IPQDPVLFSGTLRLNLDPVGES-SDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ Q+P LF+ T+ N+ E + E + A ++A+ F+ LP V + G L
Sbjct: 497 VSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQL 555
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 63/120 (52%), Gaps = 5/120 (4%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
SV + +VG +G GKS++ L R + G I IDG +I+TL RS++ I+
Sbjct: 1100 FSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVS 1159
Query: 547 QDPVLFSGTLRLN----LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
Q+P LF ++ N LDP + + + +A LA+++ F++ LP + V + G L
Sbjct: 1160 QEPTLFDCSIAENIIYGLDPSSVTMAQ-VEEAARLANIHNFIAELPEGFETRVGDRGTQL 1218
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 76/242 (31%), Positives = 117/242 (48%), Gaps = 36/242 (14%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ--VLA 270
E++GIVGR G+GKS+LT + R P +G ++IDG D+ + LR ++ ++ Q VL
Sbjct: 32 EVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 91
Query: 271 TIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
+I +SL P S + Y A
Sbjct: 92 NRSIID--------------------NISLA----------NPGMSVEKVIYAAKLAGAH 121
Query: 331 RLESVSRSPIYSHFGETVTG-NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
S R + GE G + GQRQ I +ARAL+ KILI DEAT+A+D E++ +I
Sbjct: 122 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 181
Query: 390 STIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF---YSMA 446
+ TV+ IAHRL+T+ ++DR++V++KG +VE L+ S++ Y +
Sbjct: 182 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 241
Query: 447 KD 448
D
Sbjct: 242 SD 243
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ LS+ +GIVGR G+GKS+LT + R P +G ++IDG D+ + LR ++ +
Sbjct: 24 INLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 83
Query: 545 IPQDPVLFSGTL--RLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ QD VL + ++ ++L G S ++ I+ A +LA + F+S L V E G L
Sbjct: 84 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISELREGYNTIVGEQGAGL 142
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 89/330 (26%), Positives = 148/330 (44%), Gaps = 65/330 (19%)
Query: 146 KITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYK 205
+ T+ LN L + ++ + + ERI E + +E + D + +GE+EFK+
Sbjct: 305 QFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD---DPDAVELREVRGEIEFKNVW 361
Query: 206 VRYREGL-------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
Y + + V +VG TG+GK+++ L R + G I++DG+DIR
Sbjct: 362 FSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK 421
Query: 253 LGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIIT 312
+ +LRS + I+ +Q +++F+ VK
Sbjct: 422 IKRSSLRSSIGIV------------------------------LQDTILFSTTVK----- 446
Query: 313 PFCSNLQRFYV-ATSRQLKRLESVSRSPIY-SHFGE----TVTGN-----VGQRQLICLA 361
NL+ AT ++K ++ S + H E +T N GQRQL+ +
Sbjct: 447 ---ENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAIT 503
Query: 362 RALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421
RA L KILILDEAT+ +D +T+ IQ+ + T + IAHRLNTI ++D ++VL
Sbjct: 504 RAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLR 563
Query: 422 KGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
G +VE L++ + + GL
Sbjct: 564 DGEIVEMGKHDELIQKRGFYYELFTSQYGL 593
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 83/151 (54%), Gaps = 6/151 (3%)
Query: 455 AVRLETVGNLITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFR 514
AV L V I F + K+ + + + +V +VG TG+GK+++ L R
Sbjct: 345 AVELREVRGEIEFKNVWFSYDKKKPVLKDIT-FHIKPGQKVALVGPTGSGKTTIVNLLMR 403
Query: 515 IIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL---DPVGESSDEAI 571
+ G I++DG+DIR + +LRS + I+ QD +LFS T++ NL +P ++DE I
Sbjct: 404 FYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNP--GATDEEI 461
Query: 572 WKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+A +L H + F+ +LP + +++ GE+L
Sbjct: 462 KEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 93 RLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLSVQQTLS 142
RL ++L + + R FFD TP G ++SR +DV+ ++N L S+ Q S
Sbjct: 111 RLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFS 160
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 26 MSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTITVFFYGFVISL 85
+ FFD TP G +ISR DV+ +++ L S I ++ L I +F ++SL
Sbjct: 125 VGFFDRTPHGDIISRVINDVDNINNVLGN---SIIQFFSGIVTLAGAVIMMFRVNVILSL 181
Query: 86 GTL 88
TL
Sbjct: 182 VTL 184
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 118/242 (48%), Gaps = 36/242 (14%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ--VLA 270
E++GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ ++ Q VL
Sbjct: 36 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 95
Query: 271 TIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
+I +SL P S + Y A
Sbjct: 96 NRSIID--------------------NISLA----------NPGMSVEKVIYAAKLAGAH 125
Query: 331 RLESVSRSPIYSHFGETVTG-NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
S R + GE G + GQRQ I +ARAL+ KILI D+AT+A+D E++ +I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIM 185
Query: 390 STIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF---YSMA 446
+ TV+ IAHRL+T+ ++DR++V++KG +VE L+ S++ Y +
Sbjct: 186 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Query: 447 KD 448
D
Sbjct: 246 SD 247
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ LS+ +GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ +
Sbjct: 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87
Query: 545 IPQDPVLFSGTL--RLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ QD VL + ++ ++L G S ++ I+ A +LA + F+S L V E G L
Sbjct: 88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISELREGYNTIVGEQGAGL 146
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 36/242 (14%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ--VLA 270
E++GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ ++ Q VL
Sbjct: 30 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 89
Query: 271 TIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
+I +SL P S + Y A
Sbjct: 90 NRSIID--------------------NISLA----------NPGMSVEKVIYAAKLAGAH 119
Query: 331 RLESVSRSPIYSHFGETVTG-NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
S R + GE G + GQRQ I +ARAL+ KILI DEAT+A+D E++ +I
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 390 STIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF---YSMA 446
+ TV+ IA RL+T+ ++DR++V++KG +VE L+ S++ Y +
Sbjct: 180 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
Query: 447 KD 448
D
Sbjct: 240 SD 241
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ LS+ +GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ +
Sbjct: 22 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81
Query: 545 IPQDPVLFSGTL--RLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ QD VL + ++ ++L G S ++ I+ A +LA + F+S L V E G L
Sbjct: 82 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISELREGYNTIVGEQGAGL 140
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 117/242 (48%), Gaps = 36/242 (14%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ--VLA 270
E++GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ ++ Q VL
Sbjct: 36 EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLL 95
Query: 271 TIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
+I +SL P S + Y A
Sbjct: 96 NRSIID--------------------NISLA----------NPGMSVEKVIYAAKLAGAH 125
Query: 331 RLESVSRSPIYSHFGETVTG-NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
S R + GE G + GQRQ I +ARAL+ KILI DEAT+A+D E++ +I
Sbjct: 126 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 185
Query: 390 STIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF---YSMA 446
+ TV+ IA RL+T+ ++DR++V++KG +VE L+ S++ Y +
Sbjct: 186 RNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245
Query: 447 KD 448
D
Sbjct: 246 SD 247
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 67/120 (55%), Gaps = 3/120 (2%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ LS+ +GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ +
Sbjct: 28 INLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 87
Query: 545 IPQDPVLFSGTL--RLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ QD VL + ++ ++L G S ++ I+ A +LA + F+S L V E G L
Sbjct: 88 VLQDNVLLNRSIIDNISLANPGMSVEKVIYAA-KLAGAHDFISELREGYNTIVGEQGAGL 146
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 76/277 (27%), Positives = 133/277 (48%), Gaps = 57/277 (20%)
Query: 184 VNDKKPKDEWPE-----KGEVEFKDYKVRY--RE------------GLELVGIVGRTGAG 224
++ ++ KDE G++EF++ Y RE + V +VGR+G+G
Sbjct: 322 LDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 225 KSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYXXXXXXX 284
KS++ + R + +G I++DG D+R L +LR+++ ++ Q +
Sbjct: 382 KSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVH-------------- 427
Query: 285 XXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVA-TSRQLKRLESVSR-----S 338
+F + V I R + +R ++ +++
Sbjct: 428 ----------------LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLD 471
Query: 339 PIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH 398
I G ++G GQRQ I +ARALLR + ILILDEAT+A+D E++ IQ+ + +
Sbjct: 472 TIIGENGVLLSG--GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN 529
Query: 399 CTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLM 435
T L IAHRL+TI +D ++V++ G++VE + S L+
Sbjct: 530 RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELL 566
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L + V +VGR+G+GKS++ + R + +G I++DG D+R L +LR+++ +
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 421
Query: 545 IPQDPVLFSGTLRLNL--DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
+ Q+ LF+ T+ N+ E S E I +A +A+ F++ + L + E G
Sbjct: 422 VSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENG 478
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/281 (26%), Positives = 136/281 (48%), Gaps = 57/281 (20%)
Query: 184 VNDKKPKDEWPE-----KGEVEFKDYKVRY--RE------------GLELVGIVGRTGAG 224
++ ++ KDE G+VEF++ Y R+ + V +VGR+G+G
Sbjct: 322 LDSEQEKDEGKRVIERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSG 381
Query: 225 KSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYXXXXXXX 284
KS++ + R + +G I++DG D+R L +LR+++ ++ Q +
Sbjct: 382 KSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVALVSQNVH-------------- 427
Query: 285 XXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVA-TSRQLKRLESVSR-----S 338
+F + V I R + +R ++ +++
Sbjct: 428 ----------------LFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLD 471
Query: 339 PIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH 398
+ G ++G GQRQ I +ARALLR + ILILDEAT+A+D E++ IQ+ + +
Sbjct: 472 TVIGENGVLLSG--GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN 529
Query: 399 CTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKA 439
T L IAHRL+TI +D ++V++ G++VE + + L++++
Sbjct: 530 RTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRG 570
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 64/117 (54%), Gaps = 2/117 (1%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L + V +VGR+G+GKS++ + R + +G I++DG D+R L +LR+++ +
Sbjct: 362 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGEILMDGHDLREYTLASLRNQVAL 421
Query: 545 IPQDPVLFSGTLRLNL--DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
+ Q+ LF+ T+ N+ + S E I +A +A+ F++ + L + E G
Sbjct: 422 VSQNVHLFNDTVANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENG 478
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/212 (30%), Positives = 102/212 (48%), Gaps = 26/212 (12%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273
++ G +G GKS++ L R +P G I IDG I + L RS++ + Q A +
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIM- 88
Query: 274 VICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLE 333
L + ++ ED+ ++ F R +V E
Sbjct: 89 -----------AGTIRENLTYGLEGDYT-DEDLWQVLDLAFA----RSFVENMPDQLNTE 132
Query: 334 SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR 393
R G ++G GQRQ + +ARA LR KIL+LDEATA++D E++ ++Q +
Sbjct: 133 VGER-------GVKISG--GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALD 183
Query: 394 SEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLV 425
S T L IAHRL+TI+D+D++ ++KG +
Sbjct: 184 SLMKGRTTLVIAHRLSTIVDADKIYFIEKGQI 215
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 60/107 (56%), Gaps = 2/107 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ G +G GKS++ L R +P G I IDG I + L RS++ + QD + +G
Sbjct: 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG 90
Query: 555 TLRLNLDP--VGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
T+R NL G+ +DE +W+ L+LA +FV N+P +L EV E G
Sbjct: 91 TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERG 137
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 85.9 bits (211), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/276 (24%), Positives = 126/276 (45%), Gaps = 65/276 (23%)
Query: 195 EKGEVEFKDYKVRYREGLELV-------------GIVGRTGAGKSSLTLALFRIIEPADG 241
+KG +EF++ Y +G E + +VG +GAGKS++ LFR + + G
Sbjct: 50 QKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG 109
Query: 242 TIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLI 301
I IDG DI + +LRS + ++P Q +++
Sbjct: 110 CIRIDGQDISQVTQASLRSHIGVVP------------------------------QDTVL 139
Query: 302 FTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYS---HFGETVTGNVGQR--- 355
F + + I R+ T+ + + + I+ F E VG+R
Sbjct: 140 FNDTIADNI---------RYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLK 190
Query: 356 ------QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN 409
Q + +AR +L+ I++LDEAT+A+D + IQ+++ A+ T + +AHRL+
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445
T++++D++LV+ G +VE L+ ++ ++ M
Sbjct: 251 TVVNADQILVIKDGCIVERGRHEALL-SRGGVYADM 285
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 67/126 (53%), Gaps = 5/126 (3%)
Query: 476 SKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL 535
+ETL V +V + +VG +GAGKS++ LFR + + G I IDG DI +
Sbjct: 66 GRETLQD--VSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ 123
Query: 536 HTLRSRLTIIPQDPVLFSGTLRLNL--DPVGESSDEAIWKALELAHLNTFVSNLPARLQH 593
+LRS + ++PQD VLF+ T+ N+ V +DE + A + A ++ + P +
Sbjct: 124 ASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDE-VEAAAQAAGIHDAIMAFPEGYRT 182
Query: 594 EVSEGG 599
+V E G
Sbjct: 183 QVGERG 188
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 112/225 (49%), Gaps = 38/225 (16%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276
+VG TG+GKS++ L+R + A+G I I G ++ +++RS + I+PQ
Sbjct: 51 LVGHTGSGKSTIAKLLYRFYD-AEGDIKIGGKNVNKYNRNSIRSIIGIVPQD-------- 101
Query: 277 YXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVS 336
+++F E +K I+ + ++ + + +
Sbjct: 102 ----------------------TILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIE 139
Query: 337 RSP-----IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQST 391
P I + G ++G G+RQ I +AR LL+ KI+I DEAT+++D +T+ L Q
Sbjct: 140 ALPKKWDTIVGNKGMKLSG--GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKA 197
Query: 392 IRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMK 436
+ + T++ IAHRL+TI ++ +++L+KG +VE + L+K
Sbjct: 198 VEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLK 242
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 62/107 (57%), Gaps = 2/107 (1%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
+VG TG+GKS++ L+R + A+G I I G ++ +++RS + I+PQD +LF+ T+
Sbjct: 51 LVGHTGSGKSTIAKLLYRFYD-AEGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETI 109
Query: 557 RLN-LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ N L +++DE + KA + A L F+ LP + V G L
Sbjct: 110 KYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 82.8 bits (203), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 1/119 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V SV V ++G TG+GKS+L + R+I+P G + +D +D+RT+ L LR ++
Sbjct: 362 VNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISA 421
Query: 545 IPQDPVLFSGTLRLNLDPVGE-SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+PQ+ VLFSGT++ NL E ++D+ I +A ++A ++ F+ +LP V GG N
Sbjct: 422 VPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNF 480
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404
G +G GQ+Q + +ARAL++K K+LILD+ T+++D T+ I ++ CT I
Sbjct: 477 GRNFSG--GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFII 534
Query: 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKN 437
++ T + +D++LVL +G V F + L+++
Sbjct: 535 TQKIPTALLADKILVLHEGKVAGFGTHKELLEH 567
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 14/86 (16%)
Query: 196 KGEVEFKDYKVRYREGLE--------------LVGIVGRTGAGKSSLTLALFRIIEPADG 241
+G V F++ + RY E + LV ++G TG+GKS+L + R+I+P G
Sbjct: 339 EGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG 398
Query: 242 TIIIDGVDIRTLGLHTLRSRLTIIPQ 267
+ +D +D+RT+ L LR ++ +PQ
Sbjct: 399 RVEVDELDVRTVKLKDLRGHISAVPQ 424
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 79.7 bits (195), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 110/229 (48%), Gaps = 34/229 (14%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
KD + +G E V VG +G GKS+L + R + G I+IDG +I+ +LR++
Sbjct: 358 KDINLSIEKG-ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416
Query: 262 LTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRF 321
+ ++ Q +++F++ VK I+ +
Sbjct: 417 IGLVQQD------------------------------NILFSDTVKENILLGRPTATDEE 446
Query: 322 YVATSRQLKRLESVSRSP--IYSHFGET-VTGNVGQRQLICLARALLRKTKILILDEATA 378
V ++ + + P + GE V + GQ+Q + +AR L ILILDEAT+
Sbjct: 447 VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATS 506
Query: 379 AIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
A+DLE++ +IQ + T L +AHRL+TI +D+++V++ G +VE
Sbjct: 507 ALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ LS+ V VG +G GKS+L + R + G I+IDG +I+ +LR+++ +
Sbjct: 360 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 419
Query: 545 IPQDPVLFSGTLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601
+ QD +LFS T++ N+ P ++DE + +A ++A+ + F+ NLP EV E G
Sbjct: 420 VQQDNILFSDTVKENILLGRPT--ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477
Query: 602 L 602
L
Sbjct: 478 L 478
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 9/65 (13%)
Query: 28 FFDTTPVGRMISRFSQDVE-TVDSNLPTFLRSWINCL-----FSVLYLMPVTIT---VFF 78
F+ VG++ISR DVE T D L + W++C+ S+++ + V +T +F
Sbjct: 111 FYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFI 170
Query: 79 YGFVI 83
+ F I
Sbjct: 171 FPFYI 175
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 116/272 (42%), Gaps = 50/272 (18%)
Query: 196 KGEVEFKDYKVRYR--------EGL-------ELVGIVGRTGAGKSSLTLALFRIIEPAD 240
KG V+F+D Y +GL ++ +VG G+GKS++ L + +P
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSL 300
G +++DG + H L +++ + Q +F + I L
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQE-PLLFGRSFREN---------------IAYGL 117
Query: 301 IFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV---GQRQL 357
T ++ + S F + + GET GN GQRQ
Sbjct: 118 TRTPTMEEITAVAMESGAHDFISGFPQGYD-----------TEVGET--GNQLSGGQRQA 164
Query: 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTI--RSEFAHCTVLTIAHRLNTIIDSD 415
+ LARAL+RK ++LILD+AT+A+D +Q + E+A TVL I H+L+ +
Sbjct: 165 VALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQLSLAERAH 224
Query: 416 RVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
+L L +G V E + LM+ + + SM +
Sbjct: 225 HILFLKEGSVCEQGTHLQLME-RGGCYRSMVE 255
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
+VG G+GKS++ L + +P G +++DG + H L +++ + Q+P+LF +
Sbjct: 50 LVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSF 109
Query: 557 RLNLDPVG----ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
R N+ G + +E A+E + + F+S P EV E G L
Sbjct: 110 RENIA-YGLTRTPTMEEITAVAME-SGAHDFISGFPQGYDTEVGETGNQL 157
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 70/272 (25%), Positives = 115/272 (42%), Gaps = 50/272 (18%)
Query: 196 KGEVEFKDYKVRYR--------EGL-------ELVGIVGRTGAGKSSLTLALFRIIEPAD 240
KG V+F+D Y +GL ++ +VG G+GKS++ L + +P
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSL 300
G +++DG + H L +++ + Q +F + I L
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQE-PLLFGRSFREN---------------IAYGL 117
Query: 301 IFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN---VGQRQL 357
T ++ + S F + + GET GN VGQRQ
Sbjct: 118 TRTPTMEEITAVAMESGAHDFISGFPQGYD-----------TEVGET--GNQLAVGQRQA 164
Query: 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTI--RSEFAHCTVLTIAHRLNTIIDSD 415
+ LARAL+RK ++LILD AT+A+D +Q + E+A TVL I +L+ +
Sbjct: 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAH 224
Query: 416 RVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
+L L +G V E + LM+ + + SM +
Sbjct: 225 HILFLKEGSVCEQGTHLQLME-RGGCYRSMVE 255
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
+VG G+GKS++ L + +P G +++DG + H L +++ + Q+P+LF +
Sbjct: 50 LVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSF 109
Query: 557 RLNLDPVG----ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
R N+ G + +E A+E + + F+S P EV E G L
Sbjct: 110 RENIA-YGLTRTPTMEEITAVAME-SGAHDFISGFPQGYDTEVGETGNQL 157
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 114/272 (41%), Gaps = 50/272 (18%)
Query: 196 KGEVEFKDYKVRYR--------EGL-------ELVGIVGRTGAGKSSLTLALFRIIEPAD 240
KG V+F+D Y +GL ++ +VG G+GKS++ L + +P
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSL 300
G +++DG + H L +++ + Q +F + I L
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQE-PLLFGRSFREN---------------IAYGL 117
Query: 301 IFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV---GQRQL 357
T ++ + S F + + GET GN GQRQ
Sbjct: 118 TRTPTMEEITAVAMESGAHDFISGFPQGYD-----------TEVGET--GNQLSGGQRQA 164
Query: 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTI--RSEFAHCTVLTIAHRLNTIIDSD 415
+ LARAL+RK ++LILD AT+A+D +Q + E+A TVL I +L+ +
Sbjct: 165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAH 224
Query: 416 RVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
+L L +G V E + LM+ + + SM +
Sbjct: 225 HILFLKEGSVCEQGTHLQLME-RGGCYRSMVE 255
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 6/110 (5%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
+VG G+GKS++ L + +P G +++DG + H L +++ + Q+P+LF +
Sbjct: 50 LVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSF 109
Query: 557 RLNLDPVG----ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
R N+ G + +E A+E + + F+S P EV E G L
Sbjct: 110 RENIA-YGLTRTPTMEEITAVAME-SGAHDFISGFPQGYDTEVGETGNQL 157
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 118/287 (41%), Gaps = 80/287 (27%)
Query: 196 KGEVEFKDYKVRYR--------EGL-------ELVGIVGRTGAGKSSLTLALFRIIEPAD 240
+G V+F+D Y +GL E+ +VG G+GKS++ L + +P
Sbjct: 12 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 71
Query: 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSL 300
G +++DG +PQ Y QV+
Sbjct: 72 GQLLLDG---------------KPLPQY---------------------EHRYLHRQVAA 95
Query: 301 IFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG---------- 350
+ E P + F +LQ Q +E ++ + + S ++G
Sbjct: 96 VGQE---PQV---FGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVD 149
Query: 351 ------NVGQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCT 400
+ GQRQ + LARAL+RK +LILD+AT+A+D L+ + L+ + E +
Sbjct: 150 EAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYES--PERYSRS 207
Query: 401 VLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
VL I L+ + +D +L L+ G + E + LM+ K +++M +
Sbjct: 208 VLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG-CYWAMVQ 253
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 53/108 (49%), Gaps = 2/108 (1%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
+VG G+GKS++ L + +P G +++DG + L ++ + Q+P +F +L
Sbjct: 48 LVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSL 107
Query: 557 RLNL--DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ N+ + + E I A + ++F+S LP EV E G L
Sbjct: 108 QENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQL 155
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 112/239 (46%), Gaps = 37/239 (15%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTL 258
K V REG E+V ++G +G+GKS+ L + + +G IIIDG++++ L+ +
Sbjct: 40 LKGINVHIREG-EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 259 RSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNL 318
R + ++ Q F ++++ + P+ + +
Sbjct: 99 REEVGMVFQ-----------------------RFNLFPHMTVLNNITLAPMKVRKWPRE- 134
Query: 319 QRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATA 378
A ++ ++ L+ V + ++++G GQ Q + +ARAL + KI++ DE T+
Sbjct: 135 ----KAEAKAMELLDKVGLKDKAHAYPDSLSG--GQAQRVAIARALAMEPKIMLFDEPTS 188
Query: 379 AIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434
A+D E + S ++ + A+ T++ + H + + DRVL +D G ++E P L
Sbjct: 189 ALDPEMVGEVLSVMK-QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 246
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSRLTIIPQDPVLFSG 554
++G +G+GKS+ L + + +G IIIDG++++ L+ +R + ++ Q LF
Sbjct: 55 VIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 114
Query: 555 TLRLN 559
LN
Sbjct: 115 MTVLN 119
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 112/239 (46%), Gaps = 37/239 (15%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTL 258
K V REG E+V ++G +G+GKS+ L + + +G IIIDG++++ L+ +
Sbjct: 19 LKGINVHIREG-EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 259 RSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNL 318
R + ++ Q F ++++ + P+ + +
Sbjct: 78 REEVGMVFQ-----------------------RFNLFPHMTVLNNITLAPMKVRKWPRE- 113
Query: 319 QRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATA 378
A ++ ++ L+ V + ++++G GQ Q + +ARAL + KI++ DE T+
Sbjct: 114 ----KAEAKAMELLDKVGLKDKAHAYPDSLSG--GQAQRVAIARALAMEPKIMLFDEPTS 167
Query: 379 AIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434
A+D E + S ++ + A+ T++ + H + + DRVL +D G ++E P L
Sbjct: 168 ALDPEMVGEVLSVMK-QLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDL 225
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSRLTIIPQDPVLFSG 554
++G +G+GKS+ L + + +G IIIDG++++ L+ +R + ++ Q LF
Sbjct: 34 VIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPH 93
Query: 555 TLRLN 559
LN
Sbjct: 94 MTVLN 98
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 104/238 (43%), Gaps = 39/238 (16%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268
REG E+VG++G +G+GK+++ + + P G + I G R+T +P
Sbjct: 39 REG-EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGG------------KRVTDLPPQ 85
Query: 269 LATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPL-IITPFCSNLQRFYVATSR 327
+ ++ + + VS E P + L RF
Sbjct: 86 KRNVGLVF-------QNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFM----- 133
Query: 328 QLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
RLES + + F ++G GQ+Q + LARAL + ++L+ DE AAID +
Sbjct: 134 ---RLESYA-----NRFPHELSG--GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRE 183
Query: 388 IQSTIRS---EFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+++ +R E +V + + +DRVLVL +G V +F +P + + ++F
Sbjct: 184 LRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
++ G++G +GAGKS+L + + P +G++++DG ++ TL S LT + + I
Sbjct: 32 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLS----ESELTKARRQIGMI 87
Query: 273 FVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
F + + +F PL + N + V R + L
Sbjct: 88 F-----------------QHFNLLSSRTVFGNVALPLEL----DNTPKDEVK-RRVTELL 125
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
V + + ++G GQ+Q + +ARAL K+L+ DEAT+A+D T I +
Sbjct: 126 SLVGLGDKHDSYPSNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELL 183
Query: 393 R--SEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432
+ + T+L I H ++ + D V V+ G ++E D+ S
Sbjct: 184 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 226
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSR 541
V L V G++G +GAGKS+L + + P +G++++DG ++ TL L R +
Sbjct: 24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQ 83
Query: 542 LTIIPQDPVLFS-----GTLRLNLDPVGESSDEAIWKALELAHL-------NTFVSNLPA 589
+ +I Q L S G + L L+ DE + EL L +++ SNL
Sbjct: 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG 143
Query: 590 RLQHEVS 596
+ V+
Sbjct: 144 GQKQRVA 150
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 101/223 (45%), Gaps = 31/223 (13%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
++ G++G +GAGKS+L + + P +G++++DG ++ TL S LT + + I
Sbjct: 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLS----ESELTKARRQIGMI 110
Query: 273 FVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
F + + +F PL + N + V R + L
Sbjct: 111 F-----------------QHFNLLSSRTVFGNVALPLEL----DNTPKDEVK-RRVTELL 148
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
V + + ++G GQ+Q + +ARAL K+L+ D+AT+A+D T I +
Sbjct: 149 SLVGLGDKHDSYPSNLSG--GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206
Query: 393 R--SEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432
+ + T+L I H ++ + D V V+ G ++E D+ S
Sbjct: 207 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 249
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSR 541
V L V G++G +GAGKS+L + + P +G++++DG ++ TL L R +
Sbjct: 47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQ 106
Query: 542 LTIIPQDPVLFS-----GTLRLNLDPVGESSDEAIWKALELAHL-------NTFVSNLPA 589
+ +I Q L S G + L L+ DE + EL L +++ SNL
Sbjct: 107 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG 166
Query: 590 RLQHEVS 596
+ V+
Sbjct: 167 GQKQRVA 173
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 64/119 (53%), Gaps = 9/119 (7%)
Query: 330 KRLESVSR----SPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD 385
KR+E V++ + +HF ++G GQ+Q + LARAL++ +L+LDE + +D
Sbjct: 119 KRVEEVAKILDIHHVLNHFPRELSG--GQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 386 DLIQSTIRSEFAH--CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASI 441
D ++ ++ + T+L ++H I +DRV VL KG +V+ P L N SI
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSI 235
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 100/223 (44%), Gaps = 31/223 (13%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
++ G++G +GAGKS+L + + P +G++++DG ++ TL S LT + + I
Sbjct: 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLS----ESELTKARRQIGXI 110
Query: 273 FVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
F + + +F PL + N + V R + L
Sbjct: 111 F-----------------QHFNLLSSRTVFGNVALPLEL----DNTPKDEVK-RRVTELL 148
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
V + + ++G GQ+Q + +ARAL K+L+ D+AT+A+D T I +
Sbjct: 149 SLVGLGDKHDSYPSNLSG--GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELL 206
Query: 393 R--SEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432
+ + T+L I H + + D V V+ G ++E D+ S
Sbjct: 207 KDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDTVS 249
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSR 541
V L V G++G +GAGKS+L + + P +G++++DG ++ TL L R +
Sbjct: 47 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQ 106
Query: 542 LTIIPQDPVLFS-----GTLRLNLDPVGESSDEAIWKALELAHL-------NTFVSNLPA 589
+ I Q L S G + L L+ DE + EL L +++ SNL
Sbjct: 107 IGXIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSG 166
Query: 590 RLQHEVS 596
+ V+
Sbjct: 167 GQKQRVA 173
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 63/119 (52%), Gaps = 9/119 (7%)
Query: 330 KRLESVSR----SPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD 385
KR+E V++ + +HF ++G Q+Q + LARAL++ +L+LDE + +D
Sbjct: 119 KRVEEVAKILDIHHVLNHFPRELSG--AQQQRVALARALVKDPSLLLLDEPFSNLDARMR 176
Query: 386 DLIQSTIRSEFAH--CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASI 441
D ++ ++ + T+L ++H I +DRV VL KG +V+ P L N SI
Sbjct: 177 DSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSI 235
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 53/237 (22%)
Query: 193 WPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
W E G KD + G +L+ + G TGAGK+SL + + +EP++G I
Sbjct: 16 WEEGGTPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKI--------- 65
Query: 253 LGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIIT 312
H+ R + F Q S I +K II
Sbjct: 66 --KHSGR--------------------------------ISFCSQFSWIMPGTIKENIIF 91
Query: 313 PFCSNLQRFYVATSRQLKRLESVSR-----SPIYSHFGETVTGNVGQRQLICLARALLRK 367
+ R Y + + + E +S+ + + G T++G GQR I LARA+ +
Sbjct: 92 GVSYDEYR-YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG--GQRARISLARAVYKD 148
Query: 368 TKILILDEATAAIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
+ +LD +D+ T+ ++ +S + A+ T + + ++ + +D++L+L +G
Sbjct: 149 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 205
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ + G TGAGK+SL + + +EP++G I G R++ Q + G
Sbjct: 37 LAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPG 83
Query: 555 TLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSEGG 599
T++ N+ G S DE +++ ++ L +S + + EGG
Sbjct: 84 TIKENI-IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 128
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 99/237 (41%), Gaps = 54/237 (22%)
Query: 193 WPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
W E G KD + G +L+ + G TGAGK+SL + + +EP++G I
Sbjct: 16 WEEGGTPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKI--------- 65
Query: 253 LGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIIT 312
H+ R + F Q S I +K II
Sbjct: 66 --KHSGR--------------------------------ISFCSQFSWIMPGTIKENIIG 91
Query: 313 PFCSNLQRFYVATSRQLKRLESVSR-----SPIYSHFGETVTGNVGQRQLICLARALLRK 367
+ V + QL+ E +S+ + + G T++G GQR I LARA+ +
Sbjct: 92 VSYDEYRYRSVIKACQLE--EDISKFAEKDNIVLGEGGITLSG--GQRARISLARAVYKD 147
Query: 368 TKILILDEATAAIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
+ +LD +D+ T+ ++ +S + A+ T + + ++ + +D++L+L +G
Sbjct: 148 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 204
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 16/106 (15%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ + G TGAGK+SL + + +EP++G I G R++ Q + G
Sbjct: 37 LAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPG 83
Query: 555 TLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSEGG 599
T++ N+ +G S DE +++ ++ L +S + + EGG
Sbjct: 84 TIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 127
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 99/237 (41%), Gaps = 53/237 (22%)
Query: 193 WPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
W E G KD + G +L+ + G TGAGK+SL + + +EP++G I
Sbjct: 28 WEEGGTPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKI--------- 77
Query: 253 LGLHTLRSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIIT 312
H+ R + F Q S I +K II
Sbjct: 78 --KHSGR--------------------------------ISFCSQFSWIMPGTIKENIIF 103
Query: 313 PFCSNLQRFYVATSRQLKRLESVSR-----SPIYSHFGETVTGNVGQRQLICLARALLRK 367
+ R Y + + + E +S+ + + G T++G GQR I LARA+ +
Sbjct: 104 GVSYDEYR-YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG--GQRARISLARAVYKD 160
Query: 368 TKILILDEATAAIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
+ +LD +D+ T+ ++ +S + A+ T + + ++ + +D++L+L +G
Sbjct: 161 ADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 217
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 49/106 (46%), Gaps = 15/106 (14%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ + G TGAGK+SL + + +EP++G I G R++ Q + G
Sbjct: 49 LAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPG 95
Query: 555 TLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSEGG 599
T++ N+ G S DE +++ ++ L +S + + EGG
Sbjct: 96 TIKENI-IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 140
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 49/73 (67%), Gaps = 3/73 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI--RSEFAHCTVLTIAHRLNT 410
GQRQLI +ARA+ + K+++LDE T+A+DL D++ S + ++ + TV+ H+ N
Sbjct: 132 GQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191
Query: 411 IID-SDRVLVLDK 422
++ +++ L+L+K
Sbjct: 192 VVAIANKTLLLNK 204
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/228 (27%), Positives = 101/228 (44%), Gaps = 43/228 (18%)
Query: 210 EGLELVGIVGRTGAGKSSLT--LALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E E I+G TGAGK+ +A F + P G I++DG D+ L P+
Sbjct: 24 ESGEYFVILGPTGAGKTLFLELIAGFHV--PDSGRILLDGKDVTDLS-----------PE 70
Query: 268 VLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR 327
FV Y L F +++ I +D K ++ T+R
Sbjct: 71 KHDIAFV--YQNYSLFPHMNVKKNLEFGMRMKKI--KDPKRVL-------------DTAR 113
Query: 328 QLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
LK + R+P+ T++G G++Q + LARAL+ KIL+LDE +A+D T +
Sbjct: 114 DLKIEHLLDRNPL------TLSG--GEQQRVALARALVTNPKILLLDEPLSALDPRTQEN 165
Query: 388 IQS--TIRSEFAHCTVLTIAH-RLNTIIDSDRVLVLDKGLVVEFDSPS 432
+ ++ + TVL I H + I +DR+ V+ G +++ P
Sbjct: 166 AREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPE 213
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/236 (22%), Positives = 100/236 (42%), Gaps = 44/236 (18%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-- 258
K+ + +EG E V I+G +G+GKS++ + + +P +G + ID + L L
Sbjct: 21 LKNVNLNIKEG-EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 259 --RSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCS 316
R ++ + Q I ++ +++ LIF
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALEN---------------VELPLIF-------------- 110
Query: 317 NLQRFYVATSRQLKR---LESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKIL 371
++ A S + +R LE + + + F + GQ+Q + +ARAL I+
Sbjct: 111 ---KYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPII 167
Query: 372 ILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLV 425
+ D+ T A+D +T + I ++ +E TV+ + H +N +R++ L G V
Sbjct: 168 LADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V L++ V I+G +G+GKS++ + + +P +G + ID +I+T L LT
Sbjct: 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID--NIKTNDLDD--DELTK 79
Query: 545 IPQDPVLF 552
I +D + F
Sbjct: 80 IRRDKIGF 87
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 98/236 (41%), Gaps = 44/236 (18%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-- 258
K+ + +EG E V I G +G+GKS+ + + +P +G + ID + L L
Sbjct: 21 LKNVNLNIKEG-EFVSIXGPSGSGKSTXLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 259 --RSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCS 316
R ++ + Q I ++ +++ LIF
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALEN---------------VELPLIF-------------- 110
Query: 317 NLQRFYVATSRQLKR---LESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKIL 371
++ A S + +R LE + + + F + GQ+Q + +ARAL I+
Sbjct: 111 ---KYRGAXSGEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANNPPII 167
Query: 372 ILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLV 425
+ DE T A+D +T + I ++ +E TV+ + H +N +R++ L G V
Sbjct: 168 LADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/233 (21%), Positives = 97/233 (41%), Gaps = 38/233 (16%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-- 258
K+ + +EG E V I+G +G+GKS++ + + +P +G + ID + L L
Sbjct: 21 LKNVNLNIKEG-EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK 79
Query: 259 --RSRLTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCS 316
R ++ + Q I ++ +++ LIF
Sbjct: 80 IRRDKIGFVFQQFNLIPLLTALEN---------------VELPLIFK------------- 111
Query: 317 NLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILD 374
+ R+ + LE + + + F + GQ+Q + +ARAL I++ D
Sbjct: 112 -YRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILAD 170
Query: 375 EATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLV 425
+ T A+D +T + I ++ +E TV+ + H +N +R++ L G V
Sbjct: 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V L++ V I+G +G+GKS++ + + +P +G + ID +I+T L LT
Sbjct: 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYID--NIKTNDLDD--DELTK 79
Query: 545 IPQDPVLF 552
I +D + F
Sbjct: 80 IRRDKIGF 87
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 40/212 (18%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276
+ G TG+GKS+L + +IEP G ++ DG R G + +R + I Q F
Sbjct: 40 VAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--RKKG-YEIRRNIGIAFQYPEDQFF-- 94
Query: 277 YXXXXXXXXXXXXXXLYFFIQVSLI---FTEDVKPLIITPFCSNLQRFYVATSRQLKRLE 333
F +V+ F D P+ P F K
Sbjct: 95 --------------AERVFDEVAFAVKNFYPDRDPV---PLVKKAMEFVGLDFDSFK--- 134
Query: 334 SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD-DLIQSTI 392
R P + ++G G+++ + +A ++ + ILILDE +D E DL++
Sbjct: 135 --DRVPFF------LSG--GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVE 184
Query: 393 RSEFAHCTVLTIAHRLNTIIDS-DRVLVLDKG 423
+ + TV+ I+H + T+I+ DRV+VL+KG
Sbjct: 185 KWKTLGKTVILISHDIETVINHVDRVVVLEKG 216
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
+ G TG+GKS+L + +IEP G ++ DG
Sbjct: 40 VAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG 70
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 40/216 (18%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E + + G TG+GKS+L + +IEP G ++ DG R G + +R + I Q
Sbjct: 34 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGE--RKKG-YEIRRNIGIAFQYPEDQ 90
Query: 273 FVICYXXXXXXXXXXXXXXLYFFIQVSLI---FTEDVKPLIITPFCSNLQRFYVATSRQL 329
F F +V+ F D P+ P F
Sbjct: 91 FF----------------AERVFDEVAFAVKNFYPDRDPV---PLVKKAMEFVGLDFDSF 131
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD-DLI 388
K R P + ++G G+++ + +A ++ + ILILDE +D E DL+
Sbjct: 132 K-----DRVPFF------LSG--GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLL 178
Query: 389 QSTIRSEFAHCTVLTIAHRLNTIIDS-DRVLVLDKG 423
+ + + TV+ I+H + T+I+ DRV+VL+KG
Sbjct: 179 RIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKG 214
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
+ G TG+GKS+L + +IEP G ++ DG
Sbjct: 38 VAGNTGSGKSTLLQIVAGLIEPTSGDVLYDG 68
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 21/95 (22%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS---EFAHCTVLTIAHRLN 409
GQRQ + L RA++RK ++ ++DE + +D + +++ ++ + T+ ++
Sbjct: 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYS 444
+ DR+ V+++G++ + SP + A+ F +
Sbjct: 203 AMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVA 237
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 96/228 (42%), Gaps = 53/228 (23%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
KD + G +L+ + G TGAGK+SL + + +EP++G I H+ R
Sbjct: 55 KDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-----------KHSGR-- 100
Query: 262 LTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRF 321
+ F Q S I +K II + R
Sbjct: 101 ------------------------------ISFCSQFSWIMPGTIKENIIAGVSYDEYR- 129
Query: 322 YVATSRQLKRLESVSR-----SPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEA 376
Y + + + E +S+ + + G T++G GQR I LARA+ + + +LD
Sbjct: 130 YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSG--GQRARISLARAVYKDADLYLLDSP 187
Query: 377 TAAIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
+D+ T+ ++ +S + A+ T + + ++ + +D++L+L +G
Sbjct: 188 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 235
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ + + + G TGAGK+SL + + +EP++G I G R++
Sbjct: 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISF 103
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSEGG 599
Q + GT++ N+ G S DE +++ ++ L +S + + EGG
Sbjct: 104 CSQFSWIMPGTIKENI-IAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 52/240 (21%), Positives = 105/240 (43%), Gaps = 50/240 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV---DI----RTLGLHTLRSRLTII 265
E V ++G +G GK++ L L I +P G I D V DI R +G+ + +
Sbjct: 30 EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGM--VFQNYALY 87
Query: 266 PQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVAT 325
P + T+F + F ++ I ++V ++ V
Sbjct: 88 PHM--TVF----------------ENIAFPLRARRISKDEV------------EKRVVEI 117
Query: 326 SRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD 385
+R+L + R P ++G GQ+Q + LARAL+++ K+L+ DE + +D
Sbjct: 118 ARKLLIDNLLDRKPT------QLSG--GQQQRVALARALVKQPKVLLFDEPLSNLDANLR 169
Query: 386 DLIQSTIR---SEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
++++ I+ E +V + + + R+ V ++G +V++ +P + + ++F
Sbjct: 170 MIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF 229
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 5/79 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR---SEFAHCTVLTIAHRL- 408
G+RQ + LARAL+ + ++L+LDE +A+DL+T ++ +R EF +L + H L
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREF-DVPILHVTHDLI 188
Query: 409 NTIIDSDRVLVLDKGLVVE 427
+ +D V V+ G +VE
Sbjct: 189 EAAMLADEVAVMLNGRIVE 207
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552
++G TGAGKS + I++P G + ++G DI L R + +PQD LF
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALF 82
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 54/228 (23%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
KD + G +L+ + G TGAGK+SL + + +EP++G I H+ R
Sbjct: 55 KDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-----------KHSGR-- 100
Query: 262 LTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRF 321
+ F Q S I +K II +
Sbjct: 101 ------------------------------ISFCSQNSWIMPGTIKENIIGVSYDEYRYR 130
Query: 322 YVATSRQLKRLESVSR-----SPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEA 376
V + QL+ E +S+ + + G T++G GQR I LARA+ + + +LD
Sbjct: 131 SVIKACQLE--EDISKFAEKDNIVLGEGGITLSG--GQRARISLARAVYKDADLYLLDSP 186
Query: 377 TAAIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
+D+ T+ ++ +S + A+ T + + ++ + +D++L+L +G
Sbjct: 187 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ + + + G TGAGK+SL + + +EP++G I G R++
Sbjct: 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISF 103
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSEGG 599
Q+ + GT++ N+ +G S DE +++ ++ L +S + + EGG
Sbjct: 104 CSQNSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 54/228 (23%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
KD + G +L+ + G TGAGK+SL + + +EP++G I H+ R
Sbjct: 55 KDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-----------KHSGR-- 100
Query: 262 LTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRF 321
+ F Q S I +K II +
Sbjct: 101 ------------------------------ISFCSQNSWIMPGTIKENIIGVSYDEYRYR 130
Query: 322 YVATSRQLKRLESVSR-----SPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEA 376
V + QL+ E +S+ + + G T++G GQR I LARA+ + + +LD
Sbjct: 131 SVIKACQLE--EDISKFAEKDNIVLGEGGITLSG--GQRARISLARAVYKDADLYLLDSP 186
Query: 377 TAAIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
+D+ T+ ++ +S + A+ T + + ++ + +D++L+L +G
Sbjct: 187 FGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ + + + G TGAGK+SL + + +EP++G I G R++
Sbjct: 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISF 103
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSEGG 599
Q+ + GT++ N+ +G S DE +++ ++ L +S + + EGG
Sbjct: 104 CSQNSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAH-RLN 409
GQRQ + +ARA++ + +L++DE + +D + +++ I+ + T + + H ++
Sbjct: 146 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 205
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYS 444
+ DR+ V+++G +++ SP+ + S+F +
Sbjct: 206 AMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 240
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 95/226 (42%), Gaps = 49/226 (21%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
KD + G +L+ + G TGAGK+SL + + +EP++G I H+ R
Sbjct: 55 KDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-----------KHSGR-- 100
Query: 262 LTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRF 321
+ F Q S I +K II + R
Sbjct: 101 ------------------------------ISFCSQFSWIMPGTIKENIIFGVSYDEYR- 129
Query: 322 YVATSRQLKRLESVSRSPIYSH--FGET-VTGNVGQRQLICLARALLRKTKILILDEATA 378
Y + + + E +S+ + GE +T + GQ+ I LARA+ + + +LD
Sbjct: 130 YRSVIKACQLEEDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFG 189
Query: 379 AIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
+D+ T+ ++ +S + A+ T + + ++ + +D++L+L +G
Sbjct: 190 YLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 235
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 51/116 (43%), Gaps = 15/116 (12%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ + + + G TGAGK+SL + + +EP++G I G R++
Sbjct: 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISF 103
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSEGG 599
Q + GT++ N+ G S DE +++ ++ L +S + + EGG
Sbjct: 104 CSQFSWIMPGTIKENI-IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 158
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAH-RLN 409
GQRQ + +ARA++ + +L++DE + +D + +++ I+ + T + + H ++
Sbjct: 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 204
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYS 444
+ DR+ V+++G +++ SP+ + S+F +
Sbjct: 205 AMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 239
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/226 (22%), Positives = 95/226 (42%), Gaps = 50/226 (22%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
KD + G +L+ + G TGAGK+SL + + +EP++G I H+ R
Sbjct: 55 KDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKI-----------KHSGR-- 100
Query: 262 LTIIPQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRF 321
+ F Q S I +K II +
Sbjct: 101 ------------------------------ISFCSQFSWIMPGTIKENIIGVSYDEYRYR 130
Query: 322 YVATSRQLKRLESVSRSPIYSH--FGET-VTGNVGQRQLICLARALLRKTKILILDEATA 378
V + QL+ E +S+ + GE +T + GQ+ I LARA+ + + +LD
Sbjct: 131 SVIKACQLE--EDISKFAEKDNIVLGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFG 188
Query: 379 AIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
+D+ T+ ++ +S + A+ T + + ++ + +D++L+L +G
Sbjct: 189 YLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 16/116 (13%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ + + + G TGAGK+SL + + +EP++G I G R++
Sbjct: 57 INFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISF 103
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSEGG 599
Q + GT++ N+ +G S DE +++ ++ L +S + + EGG
Sbjct: 104 CSQFSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGG 157
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/127 (22%), Positives = 62/127 (48%), Gaps = 12/127 (9%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-------CTVLTIA 405
GQ+Q + +ARAL+++ ++L+LDE + +D L++ +R+E TV
Sbjct: 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDA----LLRLEVRAELKRLQKELGITTVYVTH 192
Query: 406 HRLNTIIDSDRVLVLDKGLVVEFDSP-SVLMKNKASIFYSMAKDAGLAWLAVRLETVGNL 464
+ + +DR+ V+ +G +++ +P V K K + + ++ ++E +
Sbjct: 193 DQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLGNPPMNFVEAKVEDGKLV 252
Query: 465 ITFSAAL 471
IT + L
Sbjct: 253 ITEKSKL 259
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 93/220 (42%), Gaps = 52/220 (23%)
Query: 210 EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269
E E++ I G TG+GK+SL + + +E ++G I H+ R
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGII-----------KHSGR---------- 100
Query: 270 ATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
+ F Q S I +K II+ + R Y + +
Sbjct: 101 ----------------------VSFCSQFSWIMPGTIKENIISGVSYDEYR-YKSVVKAC 137
Query: 330 KRLESVSR-----SPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLET 384
+ + +++ + + G T++G GQR I LARA+ + + +LD +D+ T
Sbjct: 138 QLQQDITKFAEQDNTVLGEGGVTLSG--GQRARISLARAVYKDADLYLLDSPFGYLDVFT 195
Query: 385 DDLI-QSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
++ + +S + A+ T + + ++ + +D++L+L +G
Sbjct: 196 EEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L++ + I G TG+GK+SL + + +E ++G I G R++
Sbjct: 57 INLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSF 103
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSEGG 599
Q + GT++ N+ G S DE +K+ ++ L ++ + + EGG
Sbjct: 104 CSQFSWIMPGTIKENI-ISGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 326 SRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE-T 384
+ K LE + S +Y ++G GQ +L+ + RAL+ K++++DE A +
Sbjct: 132 EKAFKILEFLKLSHLYDRKAGELSG--GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
Query: 385 DDLIQSTIRSEFAHCTVLTIAHRLNTIIDS-DRVLVLDKGLVV 426
D+ + + T L I HRL+ +++ D + V+ G ++
Sbjct: 190 HDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 326 SRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE-T 384
+ K LE + S +Y ++G GQ +L+ + RAL+ K++++DE A +
Sbjct: 132 EKAFKILEFLKLSHLYDRKAGELSG--GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLA 189
Query: 385 DDLIQSTIRSEFAHCTVLTIAHRLNTIIDS-DRVLVLDKGLVV 426
D+ + + T L I HRL+ +++ D + V+ G ++
Sbjct: 190 HDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 107/261 (40%), Gaps = 51/261 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDIRTLGLHTLRSRLTIIPQVLA 270
E+ I+G G GKS+L I++P+ G I+ D +D G+ LR + I+
Sbjct: 35 EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIV----- 89
Query: 271 TIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
+ F V++ ED K
Sbjct: 90 ------FQDPDNQLFSASVYQDVSFGAVNMKLPED---------------------EIRK 122
Query: 331 RLESVSRSPIYSHFGETVTG--NVGQRQLICLARALLRKTKILILDEATAAID-LETDDL 387
R+++ + H + T + GQ++ + +A L+ + K+LILDE TA +D + ++
Sbjct: 123 RVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEI 182
Query: 388 IQ--STIRSEFAHCTVLTIAHRLNTI-IDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYS 444
++ ++ E T++ H ++ + + D V V+ +G V +L N +F
Sbjct: 183 MKLLVEMQKELG-ITIIIATHDIDIVPLYCDNVFVMKEGRV-------ILQGNPKEVF-- 232
Query: 445 MAKDAGLAWLAVRLETVGNLI 465
A+ + + +RL +G+L+
Sbjct: 233 -AEKEVIRKVNLRLPRIGHLM 252
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDIRTLGLHTLRSRL 542
+ +++ I+G G GKS+L I++P+ G I+ D +D G+ LR +
Sbjct: 27 INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86
Query: 543 TIIPQDP--VLFSGTL 556
I+ QDP LFS ++
Sbjct: 87 GIVFQDPDNQLFSASV 102
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 104/235 (44%), Gaps = 36/235 (15%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPA----DGTIIIDGVDIRTLGLHTLRS----RLTII 265
+ IVG + +GKS++ A+ + + P G ++ G D+ T+ LR + ++
Sbjct: 36 VTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEELRKIRWKEIALV 95
Query: 266 PQVLATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVAT 325
PQ L ++V F + V+ + S L +
Sbjct: 96 PQA-------------------AQQSLNPTMKVIEHFKDTVEAHGVRWSHSEL----IEK 132
Query: 326 SRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD 385
+ + R+ ++ + + + ++G + QR LI LA LL +LILDE T+A+D+ T
Sbjct: 133 ASEKLRMVRLNPEAVLNSYPLQLSGGMKQRVLIALA--LLLDPVVLILDEPTSALDVLTQ 190
Query: 386 -DLIQ-STIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
+IQ + T++ + H + + +D+V V+ G +VE++S + KN
Sbjct: 191 AHIIQLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIFKN 245
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 11/99 (11%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH------CTVLTIAH 406
GQRQ + L RA++R+ K+ + DE + +D + ++ R+E T + + H
Sbjct: 146 GQRQRVALGRAIIRRPKVFLXDEPLSNLDAK----LRVKXRAELKKLQRQLGVTTIYVTH 201
Query: 407 -RLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYS 444
++ DR+ V +KG + + +P + + F +
Sbjct: 202 DQVEAXTXGDRIAVXNKGELQQVGTPDEVYYKPVNTFVA 240
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 210 EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269
E E++ I G TG+GK+SL + + +E ++G I H+ R
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGII-----------KHSGR---------- 100
Query: 270 ATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
+ F Q S I +K II + R Y + +
Sbjct: 101 ----------------------VSFCSQFSWIMPGTIKENIIRGVSYDEYR-YKSVVKAC 137
Query: 330 KRLESVSR-----SPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLET 384
+ + +++ + + G T++G GQR I LARA+ + + +LD +D+ T
Sbjct: 138 QLQQDITKFAEQDNTVLGEGGVTLSG--GQRARISLARAVYKDADLYLLDSPFGYLDVFT 195
Query: 385 DDLI-QSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
++ + +S + A+ T + + ++ + +D++L+L +G
Sbjct: 196 EEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L++ + I G TG+GK+SL + + +E ++G I G R++
Sbjct: 57 INLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSF 103
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSEGG 599
Q + GT++ N+ G S DE +K+ ++ L ++ + + EGG
Sbjct: 104 CSQFSWIMPGTIKENI-IRGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 4/103 (3%)
Query: 326 SRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE-T 384
+ K LE + S +Y ++G GQ +L+ + RAL+ K++++D+ A +
Sbjct: 132 EKAFKILEFLKLSHLYDRKAGELSG--GQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLA 189
Query: 385 DDLIQSTIRSEFAHCTVLTIAHRLNTIIDS-DRVLVLDKGLVV 426
D+ + + T L I HRL+ +++ D + V+ G ++
Sbjct: 190 HDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQII 232
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 91/217 (41%), Gaps = 52/217 (23%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E++ I G TG+GK+SL + + +E ++G I H+ R
Sbjct: 65 EMLAITGSTGSGKTSLLMLILGELEASEGII-----------KHSGR------------- 100
Query: 273 FVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+ F Q S I +K II + R Y + + +
Sbjct: 101 -------------------VSFCSQFSWIMPGTIKENIIFGVSYDEYR-YKSVVKACQLQ 140
Query: 333 ESVSR-----SPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
+ +++ + + G T++G GQR I LARA+ + + +LD +D+ T++
Sbjct: 141 QDITKFAEQDNTVLGEGGVTLSG--GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQ 198
Query: 388 I-QSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
+ +S + A+ T + + ++ + +D++L+L +G
Sbjct: 199 VFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
Score = 32.3 bits (72), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L++ + I G TG+GK+SL + + +E ++G I G R++
Sbjct: 57 INLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSF 103
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSEGG 599
Q + GT++ N+ G S DE +K+ ++ L ++ + + EGG
Sbjct: 104 CSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 93/222 (41%), Gaps = 44/222 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ G++G GAGK++ + +I+P+ G + + G ++ H +R ++ +P+
Sbjct: 42 EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNV-VEEPHEVRKLISYLPEEAGA- 99
Query: 273 FVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
Y +Q + + FY ++S +++
Sbjct: 100 --------------------YRNMQG-------------IEYLRFVAGFYASSSSEIE-- 124
Query: 333 ESVSRSPIYSHFGETVTGNV-----GQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
E V R+ + GE + V G + + +ARAL+ ++ ILDE T+ +D+
Sbjct: 125 EMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 184
Query: 388 IQSTIRSEFAH-CTVLTIAHR-LNTIIDSDRVLVLDKGLVVE 427
++ ++ T+L +H L DR+ ++ G +VE
Sbjct: 185 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVE 226
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 92/220 (41%), Gaps = 52/220 (23%)
Query: 210 EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269
E E++ I G TG+GK+SL + + +E ++G I H+ R
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGII-----------KHSGR---------- 100
Query: 270 ATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
+ F Q S I +K II + R Y + +
Sbjct: 101 ----------------------VSFCSQFSWIMPGTIKENIIFGVSYDEYR-YKSVVKAC 137
Query: 330 KRLESVSR-----SPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLET 384
+ + +++ + + G T++G GQR I LARA+ + + +LD +D+ T
Sbjct: 138 QLQQDITKFAEQDNTVLGEGGVTLSG--GQRARISLARAVYKDADLYLLDSPFGYLDVFT 195
Query: 385 DDLI-QSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
++ + +S + A+ T + + ++ + +D++L+L +G
Sbjct: 196 EEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 52/116 (44%), Gaps = 15/116 (12%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L++ + I G TG+GK+SL + + +E ++G I G R++
Sbjct: 57 INLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSF 103
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSEGG 599
Q + GT++ N+ G S DE +K+ ++ L ++ + + EGG
Sbjct: 104 CSQFSWIMPGTIKENI-IFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 158
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 11/185 (5%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS-EFAHCTVLTIAHR---L 408
G+ Q + +A ALLRK DE ++ +D+ + IR VL + H L
Sbjct: 232 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL 291
Query: 409 NTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAW--LAVRLETVGNLIT 466
+ + D V+ + G+ F P KD + + +R + +
Sbjct: 292 DYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVD 351
Query: 467 FSAALLAVLSKETLNAGLVGLSVS-----YAMQVGIVGRTGAGKSSLTLALFRIIEPADG 521
L + + G L V +GIVG G GK++ L + EP +G
Sbjct: 352 VERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 411
Query: 522 TIIID 526
+ D
Sbjct: 412 KVEWD 416
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 340 IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFA 397
+Y E ++G G+ Q + +A LLR I +LDE +A +D+E + IR E
Sbjct: 464 LYDRNVEDLSG--GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN 521
Query: 398 HCTVLTIAHRLNTIID--SDRVLVLD 421
T L + H + +ID SDR++V +
Sbjct: 522 EKTALVVEHDV-LMIDYVSDRLIVFE 546
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246
R+G E++GIVG G GK++ L + EP +G + D
Sbjct: 380 RKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD 416
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 92/220 (41%), Gaps = 53/220 (24%)
Query: 210 EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269
E E++ I G TG+GK+SL + + +E ++G I H+ R
Sbjct: 62 EKGEMLAITGSTGSGKTSLLMLILGELEASEGII-----------KHSGR---------- 100
Query: 270 ATIFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
+ F Q S I +K II + V + QL
Sbjct: 101 ----------------------VSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKACQL 138
Query: 330 KRLESVSR-----SPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLET 384
+ + +++ + + G T++G GQR I LARA+ + + +LD +D+ T
Sbjct: 139 Q--QDITKFAEQDNTVLGEGGVTLSG--GQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
Query: 385 DDLI-QSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
++ + +S + A+ T + + ++ + +D++L+L +G
Sbjct: 195 EEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 234
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L++ + I G TG+GK+SL + + +E ++G I G R++
Sbjct: 57 INLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSF 103
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSEGG 599
Q + GT++ N+ +G S DE +K+ ++ L ++ + + EGG
Sbjct: 104 CSQFSWIMPGTIKENI--IGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGG 157
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 68/185 (36%), Gaps = 11/185 (5%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS-EFAHCTVLTIAHR---L 408
G+ Q + +A ALLRK DE ++ +D+ + IR VL + H L
Sbjct: 218 GELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVL 277
Query: 409 NTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAW--LAVRLETVGNLIT 466
+ + D V+ + G+ F P KD + + +R + +
Sbjct: 278 DYLSDVIHVVYGEPGVYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVD 337
Query: 467 FSAALLAVLSKETLNAGLVGLSVS-----YAMQVGIVGRTGAGKSSLTLALFRIIEPADG 521
L + + G L V +GIVG G GK++ L + EP +G
Sbjct: 338 VERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG 397
Query: 522 TIIID 526
+ D
Sbjct: 398 KVEWD 402
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 45/86 (52%), Gaps = 7/86 (8%)
Query: 340 IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFA 397
+Y E ++G G+ Q + +A LLR I +LDE +A +D+E + IR E
Sbjct: 450 LYDRNVEDLSG--GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN 507
Query: 398 HCTVLTIAHRLNTIID--SDRVLVLD 421
T L + H + +ID SDR++V +
Sbjct: 508 EKTALVVEHDV-LMIDYVSDRLIVFE 532
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246
R+G E++GIVG G GK++ L + EP +G + D
Sbjct: 366 RKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD 402
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 69/186 (37%), Gaps = 13/186 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRL-- 408
G+ Q + +A ALLR DE ++ +D+ IR SE +VL + H L
Sbjct: 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGK-SVLVVEHDLAV 220
Query: 409 -NTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAW--LAVRLETVGNLI 465
+ + D V+ + G+ F P KD + + ++ G +
Sbjct: 221 LDYLSDIIHVVYGEPGVYGIFSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERV 280
Query: 466 TFSAALLAVLSKETLNAGLVGLSVS-----YAMQVGIVGRTGAGKSSLTLALFRIIEPAD 520
L + + G L V +GIVG G GK++ L + EP +
Sbjct: 281 EIERETLVTYPRLVKDYGSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKXLAGVEEPTE 340
Query: 521 GTIIID 526
G I D
Sbjct: 341 GKIEWD 346
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
G+ Q + +A LLR I +LDE +A +D+E + IR E T L + H +
Sbjct: 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHDV-L 463
Query: 411 IID--SDRVLVLD 421
ID SDR+ V +
Sbjct: 464 XIDYVSDRLXVFE 476
Score = 29.6 bits (65), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246
E++GIVG G GK++ L + EP +G I D
Sbjct: 313 EVIGIVGPNGIGKTTFVKXLAGVEEPTEGKIEWD 346
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 48/227 (21%), Positives = 86/227 (37%), Gaps = 58/227 (25%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273
LV +VG+ G GKSSL AL ++ +G + I G
Sbjct: 33 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------------------- 66
Query: 274 VICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ----- 328
+ + Q + I + ++ I+ F L+ Y + Q
Sbjct: 67 -----------------SVAYVPQQAWIQNDSLRENIL--FGCQLEEPYYRSVIQACALL 107
Query: 329 --LKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDD 386
L+ L S R+ I G ++G GQ+Q + LARA+ I + D+ +A+D
Sbjct: 108 PDLEILPSGDRTEI-GEKGVNLSG--GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGK 164
Query: 387 LIQSTI---RSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430
I + + + T + + H ++ + D ++V+ G + E S
Sbjct: 165 HIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGS 211
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 479 TLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 538
TLN + S+ V +VG+ G GKSSL AL ++ +G + I G
Sbjct: 20 TLNG--ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----------- 66
Query: 539 RSRLTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKA-LELAHLNTFVSNLPARLQHEVSE 597
+ +PQ + + +LR N+ G +E +++ ++ L + LP+ + E+ E
Sbjct: 67 --SVAYVPQQAWIQNDSLRENI-LFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGE 123
Query: 598 GGENL 602
G NL
Sbjct: 124 KGVNL 128
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 59/231 (25%), Positives = 92/231 (39%), Gaps = 48/231 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+V I+G GAGKS+L L + P+ G + G ++ + P+ LA
Sbjct: 38 EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQ-----------PKALART 86
Query: 273 FVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+ L F VS + P + LQ+ T L
Sbjct: 87 RAV----------MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTD----CL 132
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLR------KTKILILDEATAAIDL---- 382
R ++G G++Q + LAR L + + L LDE T+A+DL
Sbjct: 133 ALAQRD------YRVLSG--GEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQ 184
Query: 383 ETDDLIQSTIRSE-FAHCTVLTIAHRLN-TIIDSDRVLVLDKGLVVEFDSP 431
T L++ R E A C VL H LN + +DR+++L +G +V +P
Sbjct: 185 HTLRLLRQLTRQEPLAVCCVL---HDLNLAALYADRIMLLAQGKLVACGTP 232
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 50/122 (40%), Gaps = 9/122 (7%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V L ++ V I+G GAGKS+L L + P+ G + G ++ + L +
Sbjct: 30 VSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89
Query: 545 IPQD-----PVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
+ Q P S +++ P G S D +AL+ T L R + V GG
Sbjct: 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDR---QALQQVMAQTDCLALAQR-DYRVLSGG 145
Query: 600 EN 601
E
Sbjct: 146 EQ 147
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID--LETDDLIQ-STIRSEFAHCTVLTIAHRLN 409
GQRQ + + R L+ + + +LDE + +D L I+ S + + ++
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYS 444
+ +D+++VLD G V + P L A F +
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID--LETDDLIQ-STIRSEFAHCTVLTIAHRLN 409
GQRQ + + R L+ + + +LDE + +D L I+ S + + ++
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYS 444
+ +D+++VLD G V + P L A F +
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 8/93 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAH--CTVLTIAHRL 408
GQ+Q + +ARAL + +L+ DE T+A+D E L+ +R + A T++ + H +
Sbjct: 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKNKAS 440
S V+ L +G + E P + N S
Sbjct: 214 GFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQS 246
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 3/95 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID--LETDDLIQ-STIRSEFAHCTVLTIAHRLN 409
GQRQ + + R L+ + + +LD+ + +D L I+ S + + ++
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVE 196
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYS 444
+ +D+++VLD G V + P L A F +
Sbjct: 197 AMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR----- 407
G + + LARA+LR IL+LDE T +D + + + + T +TI+H
Sbjct: 552 GWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLD 609
Query: 408 --LNTIIDSDRV-LVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNL 464
II+ + + L KG EF + K A+ Y + L + + +
Sbjct: 610 NVCEYIINYEGLKLRKYKGNFTEF-----VKKCPAAKAYEELSNTDLEFKFPEPGYLEGV 664
Query: 465 ITFSAALLAVLSKETLNAGL-------VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE 517
T A++ V + E G + S + ++ ++G GAGKS+L L +
Sbjct: 665 KTKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724
Query: 518 PADGTI 523
P G +
Sbjct: 725 PTSGEV 730
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 77/186 (41%), Gaps = 22/186 (11%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR----- 407
G + + LARA+LR IL+LDE T +D + + + + T +TI+H
Sbjct: 546 GWKXKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLD 603
Query: 408 --LNTIIDSDRV-LVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNL 464
II+ + + L KG EF + K A+ Y + L + + +
Sbjct: 604 NVCEYIINYEGLKLRKYKGNFTEF-----VKKCPAAKAYEELSNTDLEFKFPEPGYLEGV 658
Query: 465 ITFSAALLAVLSKETLNAGL-------VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE 517
T A++ V + E G + S + ++ ++G GAGKS+L L +
Sbjct: 659 KTKQKAIVKVTNXEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 718
Query: 518 PADGTI 523
P G +
Sbjct: 719 PTSGEV 724
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 41/97 (42%), Gaps = 17/97 (17%)
Query: 332 LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQST 391
LESV + GE G + + QL A LL +I +LD+ AID ++ + +
Sbjct: 119 LESVEVLDLKKKLGELSQGTIRRVQL---ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKS 175
Query: 392 I--------------RSEFAHCTVLTIAHRLNTIIDS 414
I R E ++C V H+ +T ID
Sbjct: 176 ILEILKEKGIVIISSREELSYCDVNENLHKYSTKIDK 212
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 33.1 bits (74), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS-EFAHCTVLTIAHRLNTI 411
GQ+Q + +A L R T+ L LDE + +D + I + S + ++ + H L +
Sbjct: 144 GQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESLKNEGKGIILVTHELEYL 203
Query: 412 IDSDRVLVLDKGLV 425
D D +L + G +
Sbjct: 204 DDMDFILHISNGTI 217
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 78/187 (41%), Gaps = 24/187 (12%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
G + + LARA+LR IL+LDE T +D + + + + T +TI+H + +
Sbjct: 552 GWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHD-SVFL 608
Query: 413 DSDRVLVLD---------KGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGN 463
D+ +++ KG EF + K A+ Y + L + +
Sbjct: 609 DNVCEYIINYEGLKLRKYKGNFTEF-----VKKCPAAKAYEELSNTDLEFKFPEPGYLEG 663
Query: 464 LITFSAALLAVLSKETLNAGL-------VGLSVSYAMQVGIVGRTGAGKSSLTLALFRII 516
+ T A++ V + E G + S + ++ ++G GAGKS+L L +
Sbjct: 664 VKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGEL 723
Query: 517 EPADGTI 523
P G +
Sbjct: 724 LPTSGEV 730
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 351 NVGQRQLICLARALLRKTKILILDEATAAIDL 382
+ G++Q + +ARAL + ++LILDE A +D
Sbjct: 163 STGEKQRVXIARALXGQPQVLILDEPAAGLDF 194
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 90/222 (40%), Gaps = 42/222 (18%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTII-PQVLAT 271
E V I+G +G+GKS+L L + P +G + ++G ++ +T L+++ + L
Sbjct: 31 EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVD----YTNEKELSLLRNRKLGF 86
Query: 272 IFVICYXXXXXXXXXXXXXXLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR---- 327
+F + ++ L E+V I P + A R
Sbjct: 87 VFQ------------------FHYLIPELTALENV----IVPMLKMGKPKKEAKERGEYL 124
Query: 328 --QLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID-LET 384
+L + +SR P Y G G++Q + +ARAL + +L DE T +D T
Sbjct: 125 LSELGLGDKLSRKP-YELSG-------GEQQRVAIARALANEPILLFADEPTGNLDSANT 176
Query: 385 DDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVV 426
++ ++ +++ + H + R L + G VV
Sbjct: 177 KRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVV 218
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
+ LSV V I+G +G+GKS+L L + P +G + ++G ++
Sbjct: 23 ISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEV 68
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTII 545
L V V ++G GAGK++ A+ ++ G II +G DI H + R + ++
Sbjct: 27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALV 86
Query: 546 PQDPVLF 552
P+ +F
Sbjct: 87 PEGRRIF 93
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQ 267
++V ++G GAGK++ A+ ++ G II +G DI H + R + ++P+
Sbjct: 33 QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRXGIALVPE 88
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 353 GQRQLICLARALLRKTK---ILILDEATAAIDLE-TDDLIQSTIRSEFAHCTVLTIAHRL 408
G+ Q I LA L ++ + ILDE T + E L++ R TV+ I H L
Sbjct: 809 GEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL 868
Query: 409 NTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKAS 440
+ I ++D ++ L + G +V +P + KN S
Sbjct: 869 DVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNPHS 906
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--RTLGLHTLRSRLTIIPQDPVLFSG 554
I+G +G GK++L L +P G I + G I + L RL + Q+ VLF
Sbjct: 35 IIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPH 94
Query: 555 -TLRLNL-----DPVGESSDE--AIWKALELAHLNTFVSNLPARLQHEVSEG 598
T+ N+ + G ++ E I LEL T +S L R HE+S G
Sbjct: 95 LTVYRNIAYGLGNGKGRTAQERQRIEAMLEL----TGISELAGRYPHELSGG 142
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 353 GQRQLICLARALLRKTK---ILILDEATAAID-LETDDLIQSTIRSEFAHCTVLTIAHRL 408
G+ Q I LA L R + + +LDE T + + + L + ++ A TV+ + H++
Sbjct: 734 GEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKM 793
Query: 409 NTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKASI 441
+ SD VL + D G +V +P+ + + S+
Sbjct: 794 QVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAAGSV 832
>pdb|1XMB|A Chain A, X-ray Structure Of Iaa-aminoacid Hydrolase From
Arabidopsis Thaliana Gene At5g56660
pdb|2Q43|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Iaa-Aminoacid Hydrolase From Arabidopsis Thaliana Gene
At5g56660
Length = 418
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 17/84 (20%)
Query: 153 WLVRMTSDVETNIVAVERIKEYGETPQEAEW-VNDKKPKDEWPEKGEVEFKDYK------ 205
W+ TS ++T ++ E+ ++P+ +W V ++ E PE G E + K
Sbjct: 5 WIAEDTSQIQTKLL------EFAKSPEVFDWMVKIRRKIHENPELGYEELETSKLIRSEL 58
Query: 206 ----VRYREGLELVGIVGRTGAGK 225
++YR + + G++G G G+
Sbjct: 59 ELIGIKYRYPVAITGVIGYIGTGE 82
>pdb|3OM4|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
pdb|3OM4|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
K373a
Length = 456
Score = 28.9 bits (63), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 6/63 (9%)
Query: 187 KKPKDEWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246
K EW G + KD KVR L G+ GK +LT A + +P D T+ +D
Sbjct: 138 KNQTQEWSGSGTLT-KDGKVR----LFYTDYSGKQ-YGKQTLTTAQVNMSQPNDNTLKVD 191
Query: 247 GVD 249
GV+
Sbjct: 192 GVE 194
>pdb|3OM5|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
pdb|3OM5|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
N252a
Length = 456
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 192 EWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
EW G + KD KVR L G+ GK +LT A + +P D T+ +DGV+
Sbjct: 143 EWSGSGTLT-KDGKVR----LFYTDYSGKQ-YGKQTLTTAQVNMSQPNDNTLKVDGVE 194
>pdb|3OM2|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
D257a
Length = 456
Score = 28.9 bits (63), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 192 EWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
EW G + KD KVR L G+ GK +LT A + +P D T+ +DGV+
Sbjct: 143 EWSGSGTLT-KDGKVR----LFYTDYSGKQ-YGKQTLTTAQVNMSQPNDNTLKVDGVE 194
>pdb|3OM7|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
pdb|3OM7|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247w
Length = 456
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 192 EWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
EW G + KD KVR L G+ GK +LT A + +P D T+ +DGV+
Sbjct: 143 EWSGSGTLT-KDGKVR----LFYTDYSGKQ-YGKQTLTTAQVNMSQPNDNTLKVDGVE 194
>pdb|3OM6|A Chain A, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|B Chain B, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|C Chain C, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
pdb|3OM6|D Chain D, Crystal Structure Of B. Megaterium Levansucrase Mutant
Y247a
Length = 456
Score = 28.9 bits (63), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 6/58 (10%)
Query: 192 EWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
EW G + KD KVR L G+ GK +LT A + +P D T+ +DGV+
Sbjct: 143 EWSGSGTLT-KDGKVR----LFYTDYSGKQ-YGKQTLTTAQVNMSQPNDNTLKVDGVE 194
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,028,968
Number of Sequences: 62578
Number of extensions: 642771
Number of successful extensions: 2165
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 1858
Number of HSP's gapped (non-prelim): 295
length of query: 602
length of database: 14,973,337
effective HSP length: 104
effective length of query: 498
effective length of database: 8,465,225
effective search space: 4215682050
effective search space used: 4215682050
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (25.4 bits)