Query psy3001
Match_columns 602
No_of_seqs 417 out of 4287
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 22:59:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0055|consensus 100.0 1E-75 2.2E-80 652.9 47.4 406 3-437 96-577 (1228)
2 PTZ00265 multidrug resistance 100.0 4.6E-65 9.9E-70 606.5 45.1 404 3-423 122-655 (1466)
3 KOG0054|consensus 100.0 2.6E-63 5.6E-68 566.7 51.6 383 4-435 268-730 (1381)
4 PLN03130 ABC transporter C fam 100.0 1.1E-62 2.3E-67 591.5 54.2 378 5-435 368-827 (1622)
5 PLN03232 ABC transporter C fam 100.0 1.2E-62 2.6E-67 591.3 52.2 384 5-435 368-827 (1495)
6 TIGR00957 MRP_assoc_pro multi 100.0 2.3E-60 4.9E-65 572.4 57.5 381 5-434 385-848 (1522)
7 KOG0058|consensus 100.0 3.7E-62 8.1E-67 516.7 36.4 417 2-449 212-704 (716)
8 KOG0054|consensus 100.0 9.5E-60 2.1E-64 537.5 43.6 414 2-447 882-1373(1381)
9 PTZ00243 ABC transporter; Prov 100.0 1E-57 2.2E-62 547.8 50.4 119 484-602 1328-1446(1560)
10 COG2274 SunT ABC-type bacterio 100.0 5E-58 1.1E-62 505.1 37.9 406 3-447 219-706 (709)
11 TIGR01271 CFTR_protein cystic 100.0 3.8E-57 8.2E-62 542.8 45.8 118 484-602 1237-1354(1490)
12 PLN03130 ABC transporter C fam 100.0 1.3E-54 2.9E-59 521.6 40.9 415 3-450 978-1475(1622)
13 KOG0055|consensus 100.0 1E-54 2.2E-59 485.0 36.6 415 2-448 731-1224(1228)
14 COG1123 ATPase components of v 100.0 2.7E-56 6E-61 466.3 21.9 370 198-599 22-434 (539)
15 TIGR00957 MRP_assoc_pro multi 100.0 1.3E-53 2.7E-58 514.0 41.4 413 3-448 1030-1519(1522)
16 PLN03232 ABC transporter C fam 100.0 4.9E-53 1.1E-57 508.3 44.1 416 3-451 975-1473(1495)
17 PRK11174 cysteine/glutathione 100.0 1E-51 2.2E-56 460.7 41.3 407 4-448 89-583 (588)
18 COG1132 MdlB ABC-type multidru 100.0 1.2E-51 2.6E-56 457.6 40.7 406 5-448 79-563 (567)
19 PTZ00243 ABC transporter; Prov 100.0 1.6E-51 3.5E-56 494.4 42.0 413 5-449 1025-1546(1560)
20 COG4988 CydD ABC-type transpor 100.0 3.9E-50 8.4E-55 418.0 41.4 412 3-448 65-554 (559)
21 TIGR00958 3a01208 Conjugate Tr 100.0 8.4E-51 1.8E-55 460.0 38.3 401 4-443 227-708 (711)
22 TIGR01271 CFTR_protein cystic 100.0 1.6E-50 3.6E-55 485.6 42.0 413 2-449 949-1452(1490)
23 PRK11160 cysteine/glutathione 100.0 2.6E-50 5.7E-55 446.1 39.3 406 5-447 87-572 (574)
24 KOG0056|consensus 100.0 9.9E-51 2.2E-55 406.4 30.6 280 140-448 481-773 (790)
25 TIGR01193 bacteriocin_ABC ABC- 100.0 3.7E-50 8E-55 456.6 39.2 407 4-446 222-706 (708)
26 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 5.9E-50 1.3E-54 453.4 40.6 403 4-447 202-683 (686)
27 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 3.4E-50 7.3E-55 457.4 38.3 406 4-445 220-708 (710)
28 PTZ00265 multidrug resistance 100.0 3.2E-50 6.9E-55 479.5 37.8 410 3-447 891-1463(1466)
29 PRK09700 D-allose transporter 100.0 1.7E-51 3.7E-56 450.4 23.6 354 198-589 18-408 (510)
30 PRK10762 D-ribose transporter 100.0 1.5E-51 3.2E-56 449.6 22.9 350 198-589 17-394 (501)
31 TIGR03375 type_I_sec_LssB type 100.0 1.8E-49 4E-54 449.9 39.8 398 4-437 213-689 (694)
32 PRK11176 lipid transporter ATP 100.0 7E-49 1.5E-53 437.6 43.6 407 5-447 92-577 (582)
33 PRK10790 putative multidrug tr 100.0 6E-49 1.3E-53 438.5 43.0 404 5-447 92-573 (592)
34 PRK13549 xylose transporter AT 100.0 3.7E-51 8E-56 447.0 24.2 355 198-589 18-404 (506)
35 PRK15134 microcin C ABC transp 100.0 2.1E-51 4.6E-56 451.2 22.3 359 198-589 22-424 (529)
36 PRK15439 autoinducer 2 ABC tra 100.0 1E-50 2.2E-55 443.3 24.5 351 198-589 24-402 (510)
37 PRK11288 araG L-arabinose tran 100.0 1.4E-50 3E-55 442.0 25.0 353 198-589 17-395 (501)
38 KOG0057|consensus 100.0 4E-49 8.7E-54 403.6 33.9 408 2-447 98-584 (591)
39 PRK10261 glutathione transport 100.0 4E-51 8.6E-56 455.2 20.2 361 198-589 29-462 (623)
40 COG4172 ABC-type uncharacteriz 100.0 6.8E-51 1.5E-55 400.7 19.3 368 198-599 23-431 (534)
41 COG4987 CydC ABC-type transpor 100.0 4.6E-49 9.9E-54 403.0 33.0 405 5-446 85-570 (573)
42 TIGR02633 xylG D-xylose ABC tr 100.0 2.5E-50 5.4E-55 440.4 23.3 354 198-588 14-401 (500)
43 TIGR01846 type_I_sec_HlyB type 100.0 1E-47 2.2E-52 435.3 44.7 407 4-447 205-690 (694)
44 PRK10982 galactose/methyl gala 100.0 6.3E-50 1.4E-54 436.0 23.9 351 198-589 11-390 (491)
45 TIGR03269 met_CoM_red_A2 methy 100.0 1.4E-50 3.1E-55 444.2 18.8 346 198-582 13-414 (520)
46 PRK10938 putative molybdenum t 100.0 4.7E-50 1E-54 437.2 20.0 355 199-589 17-400 (490)
47 PRK10789 putative multidrug tr 100.0 3.6E-47 7.8E-52 421.1 41.7 405 5-447 63-548 (569)
48 TIGR02203 MsbA_lipidA lipid A 100.0 3.6E-47 7.8E-52 423.3 41.4 406 4-445 80-564 (571)
49 TIGR01192 chvA glucan exporter 100.0 7.3E-47 1.6E-51 419.2 42.3 405 8-448 86-569 (585)
50 PRK13657 cyclic beta-1,2-gluca 100.0 1E-46 2.2E-51 420.0 43.3 405 8-447 86-568 (588)
51 TIGR02868 CydC thiol reductant 100.0 2E-47 4.3E-52 420.9 37.0 370 5-408 80-529 (529)
52 TIGR02204 MsbA_rel ABC transpo 100.0 4.2E-46 9E-51 415.0 43.8 408 5-446 85-572 (576)
53 COG5265 ATM1 ABC-type transpor 100.0 2E-46 4.3E-51 371.8 30.5 270 141-447 206-496 (497)
54 TIGR02857 CydD thiol reductant 100.0 7.7E-46 1.7E-50 408.3 37.6 381 4-420 70-529 (529)
55 PRK15064 ABC transporter ATP-b 100.0 2.6E-46 5.6E-51 411.1 25.6 360 198-589 14-437 (530)
56 COG1129 MglA ABC-type sugar tr 100.0 2.2E-46 4.7E-51 389.5 23.4 319 197-561 20-359 (500)
57 TIGR01194 cyc_pep_trnsptr cycl 100.0 3.5E-44 7.7E-49 395.7 40.8 382 4-428 79-551 (555)
58 PRK10522 multidrug transporter 100.0 6.7E-44 1.5E-48 393.4 42.6 378 4-429 74-531 (547)
59 TIGR01842 type_I_sec_PrtD type 100.0 1.1E-43 2.3E-48 391.8 42.2 257 144-436 267-542 (544)
60 PRK11819 putative ABC transpor 100.0 1.2E-44 2.6E-49 399.2 31.8 353 198-589 20-444 (556)
61 COG3845 ABC-type uncharacteriz 100.0 5.3E-46 1.2E-50 378.0 19.3 327 197-561 16-359 (501)
62 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 5.7E-44 1.2E-48 393.8 31.6 346 198-582 18-434 (552)
63 COG1126 GlnQ ABC-type polar am 100.0 5.3E-45 1.1E-49 333.4 17.4 212 197-439 14-228 (240)
64 PRK11147 ABC transporter ATPas 100.0 1.5E-44 3.3E-49 403.6 22.5 349 198-581 16-430 (635)
65 PRK10636 putative ABC transpor 100.0 8.8E-44 1.9E-48 396.5 28.0 349 198-588 14-428 (638)
66 COG0488 Uup ATPase components 100.0 1.7E-43 3.6E-48 378.2 22.4 340 196-582 14-430 (530)
67 PRK13409 putative ATPase RIL; 100.0 3.9E-44 8.5E-49 393.4 15.6 336 199-590 88-453 (590)
68 COG1135 AbcC ABC-type metal io 100.0 6.8E-43 1.5E-47 335.8 18.3 211 198-440 19-235 (339)
69 PLN03073 ABC transporter F fam 100.0 1.1E-42 2.3E-47 388.6 21.6 360 199-589 191-626 (718)
70 COG1125 OpuBA ABC-type proline 100.0 2.3E-42 5E-47 322.2 18.0 215 197-444 13-233 (309)
71 COG4618 ArpD ABC-type protease 100.0 8.5E-41 1.8E-45 339.1 25.6 255 148-437 289-561 (580)
72 COG1120 FepC ABC-type cobalami 100.0 9.3E-41 2E-45 322.0 17.7 213 197-437 14-229 (258)
73 COG1124 DppF ABC-type dipeptid 100.0 1.7E-40 3.6E-45 310.4 15.5 213 199-444 21-239 (252)
74 COG1127 Ttg2A ABC-type transpo 100.0 1.9E-39 4.2E-44 301.6 18.6 214 196-442 19-241 (263)
75 COG1136 SalX ABC-type antimicr 100.0 3.1E-39 6.7E-44 305.4 17.3 196 198-426 18-221 (226)
76 COG3839 MalK ABC-type sugar tr 100.0 2.9E-39 6.2E-44 323.7 17.3 210 200-443 18-230 (338)
77 COG1116 TauB ABC-type nitrate/ 100.0 7E-39 1.5E-43 302.7 16.6 191 198-425 16-211 (248)
78 COG1122 CbiO ABC-type cobalt t 100.0 1.3E-38 2.9E-43 307.5 17.9 208 198-437 17-229 (235)
79 COG1117 PstB ABC-type phosphat 100.0 5.1E-39 1.1E-43 292.6 13.7 211 199-439 21-240 (253)
80 TIGR02314 ABC_MetN D-methionin 100.0 2.3E-38 4.9E-43 325.0 20.1 209 198-439 18-233 (343)
81 COG3638 ABC-type phosphate/pho 100.0 2.2E-38 4.7E-43 293.8 15.8 208 196-435 15-236 (258)
82 TIGR00954 3a01203 Peroxysomal 100.0 1.2E-36 2.7E-41 340.3 32.8 231 146-422 378-653 (659)
83 COG3842 PotA ABC-type spermidi 100.0 2.2E-38 4.7E-43 319.1 16.2 213 197-443 17-233 (352)
84 TIGR01186 proV glycine betaine 100.0 7.6E-38 1.6E-42 322.8 20.0 212 198-442 6-225 (363)
85 COG3840 ThiQ ABC-type thiamine 100.0 4.8E-38 1E-42 278.6 15.7 193 212-437 25-220 (231)
86 COG4175 ProV ABC-type proline/ 100.0 7.6E-38 1.7E-42 300.3 17.2 215 198-444 41-262 (386)
87 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7.7E-38 1.7E-42 300.0 16.8 205 199-437 18-228 (254)
88 COG1118 CysA ABC-type sulfate/ 100.0 8.5E-38 1.8E-42 299.8 15.2 209 199-441 16-232 (345)
89 COG2884 FtsE Predicted ATPase 100.0 1.6E-37 3.4E-42 277.8 15.4 202 197-430 14-220 (223)
90 COG0444 DppD ABC-type dipeptid 100.0 2.1E-37 4.6E-42 302.7 17.0 221 198-446 18-253 (316)
91 PRK11650 ugpC glycerol-3-phosp 100.0 5.8E-37 1.3E-41 317.3 19.7 207 198-439 17-227 (356)
92 cd03261 ABC_Org_Solvent_Resist 100.0 1.2E-36 2.6E-41 299.9 19.5 207 198-437 13-227 (235)
93 PRK11432 fbpC ferric transport 100.0 1.2E-36 2.6E-41 313.9 19.7 208 198-440 19-230 (351)
94 TIGR03265 PhnT2 putative 2-ami 100.0 1.4E-36 3.1E-41 314.0 19.6 207 198-439 17-227 (353)
95 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.1E-36 2.3E-41 304.4 18.1 216 198-448 17-236 (275)
96 PRK13631 cbiO cobalt transport 100.0 2.3E-36 5E-41 308.9 19.4 207 199-437 40-266 (320)
97 PRK11022 dppD dipeptide transp 100.0 2.2E-36 4.8E-41 310.1 19.4 217 198-443 20-250 (326)
98 PRK09473 oppD oligopeptide tra 100.0 2.6E-36 5.6E-41 309.9 19.5 218 198-444 29-259 (330)
99 PRK11153 metN DL-methionine tr 100.0 3E-36 6.6E-41 311.6 20.1 208 198-438 18-232 (343)
100 PRK15079 oligopeptide ABC tran 100.0 2.9E-36 6.2E-41 309.4 19.5 215 198-443 34-258 (331)
101 PRK11308 dppF dipeptide transp 100.0 3.4E-36 7.4E-41 308.6 19.8 217 198-443 28-251 (327)
102 COG1123 ATPase components of v 100.0 2.2E-36 4.7E-41 316.9 18.4 218 198-446 304-529 (539)
103 PRK13637 cbiO cobalt transport 100.0 3.9E-36 8.5E-41 304.0 19.7 208 198-437 20-235 (287)
104 TIGR00956 3a01205 Pleiotropic 100.0 2.7E-35 5.9E-40 351.5 30.0 209 198-434 74-298 (1394)
105 TIGR01188 drrA daunorubicin re 100.0 3.7E-36 8E-41 306.7 18.9 205 198-436 6-213 (302)
106 PRK10851 sulfate/thiosulfate t 100.0 6.1E-36 1.3E-40 309.3 20.6 207 198-439 15-229 (353)
107 PRK09452 potA putrescine/sperm 100.0 4.8E-36 1E-40 311.5 19.9 208 198-440 27-238 (375)
108 PRK13647 cbiO cobalt transport 100.0 4.3E-36 9.4E-41 301.8 18.9 204 199-434 19-225 (274)
109 PRK14257 phosphate ABC transpo 100.0 6.1E-36 1.3E-40 306.7 20.2 204 200-439 97-316 (329)
110 cd03219 ABC_Mj1267_LivG_branch 100.0 5.5E-36 1.2E-40 295.5 18.9 207 198-436 13-232 (236)
111 TIGR03258 PhnT 2-aminoethylpho 100.0 5.6E-36 1.2E-40 309.9 19.7 207 198-439 18-231 (362)
112 PRK13650 cbiO cobalt transport 100.0 6E-36 1.3E-40 301.6 19.4 207 199-437 21-230 (279)
113 PRK09536 btuD corrinoid ABC tr 100.0 6.3E-36 1.4E-40 312.3 20.0 206 198-437 16-229 (402)
114 TIGR03415 ABC_choXWV_ATP choli 100.0 7.4E-36 1.6E-40 309.3 20.2 211 197-440 36-258 (382)
115 PRK13651 cobalt transporter AT 100.0 5.6E-36 1.2E-40 304.3 18.9 207 199-437 21-255 (305)
116 PRK13537 nodulation ABC transp 100.0 4.8E-36 1E-40 305.5 18.2 206 198-437 20-228 (306)
117 cd03256 ABC_PhnC_transporter A 100.0 9.5E-36 2E-40 294.9 19.7 204 198-434 14-232 (241)
118 cd03259 ABC_Carb_Solutes_like 100.0 4.5E-36 9.8E-41 291.3 16.9 197 198-429 13-213 (213)
119 PRK11000 maltose/maltodextrin 100.0 7.9E-36 1.7E-40 311.0 19.7 206 198-438 16-225 (369)
120 TIGR00960 3a0501s02 Type II (G 100.0 4E-36 8.6E-41 292.4 16.3 194 199-425 17-216 (216)
121 cd03294 ABC_Pro_Gly_Bertaine T 100.0 8.6E-36 1.9E-40 299.0 19.1 208 198-438 37-252 (269)
122 PRK10070 glycine betaine trans 100.0 1E-35 2.2E-40 310.5 20.3 209 198-439 41-257 (400)
123 PRK13646 cbiO cobalt transport 100.0 7.6E-36 1.6E-40 302.0 18.7 207 199-437 21-236 (286)
124 cd03296 ABC_CysA_sulfate_impor 100.0 1.1E-35 2.4E-40 293.7 19.4 206 198-437 15-227 (239)
125 cd03263 ABC_subfamily_A The AB 100.0 5.4E-36 1.2E-40 292.4 16.9 203 198-434 15-219 (220)
126 cd03260 ABC_PstB_phosphate_tra 100.0 6.7E-36 1.5E-40 293.0 17.5 202 199-433 14-226 (227)
127 COG4555 NatA ABC-type Na+ tran 100.0 2E-36 4.3E-41 272.9 12.4 201 200-436 17-222 (245)
128 COG0411 LivG ABC-type branched 100.0 4.2E-36 9.1E-41 281.2 14.8 224 196-439 15-242 (250)
129 cd03252 ABCC_Hemolysin The ABC 100.0 1.9E-35 4.1E-40 291.9 20.4 207 198-437 15-226 (237)
130 PRK11607 potG putrescine trans 100.0 1.2E-35 2.6E-40 309.1 19.9 208 198-440 32-243 (377)
131 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.3E-35 2.8E-40 293.8 19.1 206 199-437 15-226 (242)
132 PRK13643 cbiO cobalt transport 100.0 1.1E-35 2.4E-40 300.9 19.0 207 199-437 20-234 (288)
133 PRK14250 phosphate ABC transpo 100.0 1.6E-35 3.5E-40 292.6 19.3 203 198-438 16-223 (241)
134 cd03265 ABC_DrrA DrrA is the A 100.0 1.1E-35 2.4E-40 290.0 17.5 202 198-433 13-218 (220)
135 PRK13634 cbiO cobalt transport 100.0 1.2E-35 2.6E-40 301.0 18.3 205 199-437 21-236 (290)
136 cd03258 ABC_MetN_methionine_tr 100.0 1.4E-35 2.9E-40 292.1 18.2 205 199-436 19-230 (233)
137 cd03225 ABC_cobalt_CbiO_domain 100.0 9.7E-36 2.1E-40 288.6 16.8 195 198-424 14-211 (211)
138 PRK13635 cbiO cobalt transport 100.0 2.3E-35 4.9E-40 297.2 19.8 206 198-437 20-230 (279)
139 PRK13636 cbiO cobalt transport 100.0 1.8E-35 3.8E-40 298.9 19.0 208 198-437 19-232 (283)
140 PRK13652 cbiO cobalt transport 100.0 2.1E-35 4.6E-40 297.5 19.3 207 199-437 18-228 (277)
141 PRK13536 nodulation factor exp 100.0 1.7E-35 3.7E-40 304.4 18.8 206 198-437 54-262 (340)
142 TIGR02315 ABC_phnC phosphonate 100.0 1.9E-35 4.2E-40 293.0 18.5 211 198-434 15-233 (243)
143 cd03226 ABC_cobalt_CbiO_domain 100.0 1.3E-35 2.7E-40 286.4 16.4 190 199-426 14-205 (205)
144 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 2.9E-35 6.2E-40 290.2 19.1 205 198-436 14-221 (236)
145 PRK13648 cbiO cobalt transport 100.0 3.6E-35 7.8E-40 294.9 20.1 208 199-437 23-232 (269)
146 cd03224 ABC_TM1139_LivF_branch 100.0 2.6E-35 5.7E-40 288.0 18.4 204 198-435 13-220 (222)
147 cd03218 ABC_YhbG The ABC trans 100.0 2.1E-35 4.5E-40 290.6 17.8 204 198-436 13-222 (232)
148 TIGR00972 3a0107s01c2 phosphat 100.0 3.9E-35 8.4E-40 291.3 19.7 206 199-437 15-233 (247)
149 PRK15093 antimicrobial peptide 100.0 3.1E-35 6.8E-40 302.7 19.5 220 198-443 20-255 (330)
150 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1.7E-35 3.6E-40 288.5 16.3 195 198-425 17-218 (218)
151 PRK11831 putative ABC transpor 100.0 4.6E-35 1E-39 293.9 19.9 207 198-437 20-234 (269)
152 cd03288 ABCC_SUR2 The SUR doma 100.0 8.9E-35 1.9E-39 290.0 21.9 212 199-443 35-250 (257)
153 TIGR01288 nodI ATP-binding ABC 100.0 2.5E-35 5.4E-40 300.7 18.2 203 198-436 17-224 (303)
154 TIGR03522 GldA_ABC_ATP gliding 100.0 3.3E-35 7.1E-40 299.3 19.1 205 198-436 15-221 (301)
155 COG1131 CcmA ABC-type multidru 100.0 2.5E-35 5.5E-40 297.2 17.9 204 198-436 18-226 (293)
156 cd03264 ABC_drug_resistance_li 100.0 2.3E-35 5.1E-40 285.9 16.2 197 198-429 13-211 (211)
157 PRK13641 cbiO cobalt transport 100.0 3.9E-35 8.4E-40 296.9 18.5 207 199-437 21-235 (287)
158 PRK13632 cbiO cobalt transport 100.0 5E-35 1.1E-39 294.0 19.1 208 198-437 22-232 (271)
159 PRK11629 lolD lipoprotein tran 100.0 5.1E-35 1.1E-39 287.8 18.6 200 198-430 22-228 (233)
160 PRK13638 cbiO cobalt transport 100.0 3.5E-35 7.6E-40 295.3 17.8 208 199-437 15-226 (271)
161 TIGR02211 LolD_lipo_ex lipopro 100.0 4E-35 8.6E-40 286.4 17.6 196 198-426 18-220 (221)
162 PRK14247 phosphate ABC transpo 100.0 8.5E-35 1.8E-39 289.5 20.1 210 198-437 16-235 (250)
163 TIGR02769 nickel_nikE nickel i 100.0 6.1E-35 1.3E-39 292.6 19.1 209 198-437 24-241 (265)
164 COG0410 LivF ABC-type branched 100.0 1.4E-34 2.9E-39 269.0 19.8 206 198-438 16-228 (237)
165 cd03301 ABC_MalK_N The N-termi 100.0 3.5E-35 7.7E-40 285.1 16.7 196 199-429 14-213 (213)
166 PRK13642 cbiO cobalt transport 100.0 5.9E-35 1.3E-39 294.3 18.9 205 199-437 21-230 (277)
167 PRK13644 cbiO cobalt transport 100.0 6.1E-35 1.3E-39 293.5 18.9 205 199-437 16-225 (274)
168 PRK11264 putative amino-acid A 100.0 7.2E-35 1.6E-39 290.1 19.2 207 198-437 16-234 (250)
169 cd03266 ABC_NatA_sodium_export 100.0 3.1E-35 6.8E-40 286.6 16.2 197 199-429 19-218 (218)
170 PRK13548 hmuV hemin importer A 100.0 8E-35 1.7E-39 290.4 19.3 204 198-436 15-230 (258)
171 PRK09493 glnQ glutamine ABC tr 100.0 8.2E-35 1.8E-39 287.8 19.1 207 198-437 14-226 (240)
172 PRK13640 cbiO cobalt transport 100.0 8.2E-35 1.8E-39 293.8 19.5 207 199-437 21-233 (282)
173 PRK14269 phosphate ABC transpo 100.0 1.4E-34 3E-39 287.0 20.7 207 198-437 15-231 (246)
174 cd03251 ABCC_MsbA MsbA is an e 100.0 1.1E-34 2.3E-39 285.9 19.6 206 199-437 16-226 (234)
175 cd03293 ABC_NrtD_SsuB_transpor 100.0 4E-35 8.6E-40 286.1 16.3 196 198-431 17-218 (220)
176 PRK10908 cell division protein 100.0 7.5E-35 1.6E-39 284.5 18.0 195 198-427 15-217 (222)
177 PRK11701 phnK phosphonate C-P 100.0 1.5E-34 3.2E-39 288.9 20.4 211 198-437 19-242 (258)
178 PRK13649 cbiO cobalt transport 100.0 8.2E-35 1.8E-39 294.2 18.7 205 199-437 21-235 (280)
179 COG4181 Predicted ABC-type tra 100.0 5.6E-35 1.2E-39 256.4 15.1 197 199-427 24-226 (228)
180 PRK13633 cobalt transporter AT 100.0 1E-34 2.2E-39 293.1 19.2 208 198-437 23-234 (280)
181 TIGR03411 urea_trans_UrtD urea 100.0 1.4E-34 3.1E-39 286.5 20.0 213 198-436 15-231 (242)
182 PRK10575 iron-hydroxamate tran 100.0 9.8E-35 2.1E-39 291.1 18.8 211 198-436 24-237 (265)
183 PRK15112 antimicrobial peptide 100.0 8.8E-35 1.9E-39 291.6 18.4 210 199-437 27-240 (267)
184 cd03257 ABC_NikE_OppD_transpor 100.0 5.4E-35 1.2E-39 287.0 16.5 199 199-429 19-228 (228)
185 PRK13639 cbiO cobalt transport 100.0 9.7E-35 2.1E-39 292.4 18.7 207 199-437 16-227 (275)
186 PRK13645 cbiO cobalt transport 100.0 8.5E-35 1.8E-39 295.1 18.2 205 199-437 25-241 (289)
187 TIGR03005 ectoine_ehuA ectoine 100.0 1.6E-34 3.4E-39 287.8 19.7 208 198-438 13-238 (252)
188 TIGR02673 FtsE cell division A 100.0 5.6E-35 1.2E-39 283.9 16.1 194 198-424 15-214 (214)
189 cd03292 ABC_FtsE_transporter F 100.0 7E-35 1.5E-39 283.3 16.7 192 199-425 15-214 (214)
190 PRK10895 lipopolysaccharide AB 100.0 1.7E-34 3.7E-39 285.7 19.4 206 198-436 16-226 (241)
191 cd03268 ABC_BcrA_bacitracin_re 100.0 5.9E-35 1.3E-39 282.4 15.7 193 198-429 13-208 (208)
192 COG4172 ABC-type uncharacteriz 100.0 1.1E-34 2.5E-39 286.2 17.8 220 198-446 300-526 (534)
193 PRK14273 phosphate ABC transpo 100.0 1.6E-34 3.6E-39 288.0 19.3 206 199-440 21-242 (254)
194 PRK14267 phosphate ABC transpo 100.0 1.8E-34 3.9E-39 287.7 19.5 205 198-437 17-238 (253)
195 PRK11614 livF leucine/isoleuci 100.0 1.3E-34 2.9E-39 285.7 18.3 205 198-436 18-226 (237)
196 PRK10619 histidine/lysine/argi 100.0 2.6E-34 5.7E-39 286.9 20.3 207 198-437 18-242 (257)
197 cd03269 ABC_putative_ATPase Th 100.0 6.7E-35 1.5E-39 282.4 15.5 195 198-429 13-210 (210)
198 PRK10253 iron-enterobactin tra 100.0 1.7E-34 3.6E-39 289.4 18.9 211 198-436 20-233 (265)
199 COG4608 AppF ABC-type oligopep 100.0 1.8E-34 4E-39 276.3 18.1 181 198-447 26-210 (268)
200 TIGR03873 F420-0_ABC_ATP propo 100.0 2.4E-34 5.2E-39 287.1 19.4 207 198-436 14-226 (256)
201 PRK10584 putative ABC transpor 100.0 1.7E-34 3.7E-39 283.3 18.0 197 199-428 24-227 (228)
202 PRK14268 phosphate ABC transpo 100.0 2.6E-34 5.5E-39 287.1 19.5 205 198-438 25-244 (258)
203 TIGR02770 nickel_nikD nickel i 100.0 1.5E-34 3.3E-39 283.8 17.5 205 201-437 2-216 (230)
204 PRK11231 fecE iron-dicitrate t 100.0 2.2E-34 4.8E-39 287.1 18.9 211 198-436 15-227 (255)
205 cd03235 ABC_Metallic_Cations A 100.0 1E-34 2.2E-39 281.8 15.9 192 198-427 12-211 (213)
206 PRK14242 phosphate transporter 100.0 2.4E-34 5.2E-39 286.7 18.7 206 199-437 20-238 (253)
207 TIGR03410 urea_trans_UrtE urea 100.0 1.8E-34 3.9E-39 283.5 17.5 203 198-434 13-219 (230)
208 COG1137 YhbG ABC-type (unclass 100.0 4.4E-35 9.5E-40 264.0 11.9 211 197-439 16-231 (243)
209 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 3.7E-34 8.1E-39 282.8 19.7 207 198-437 16-227 (238)
210 PRK11144 modC molybdate transp 100.0 2.3E-34 5E-39 298.6 18.9 198 203-438 16-220 (352)
211 cd03214 ABC_Iron-Siderophores_ 100.0 2.4E-34 5.3E-39 271.2 17.2 165 198-428 12-179 (180)
212 PRK11124 artP arginine transpo 100.0 3.5E-34 7.6E-39 283.6 19.1 204 199-435 16-229 (242)
213 cd03298 ABC_ThiQ_thiamine_tran 100.0 2.4E-34 5.2E-39 278.8 17.4 192 203-428 16-210 (211)
214 cd03254 ABCC_Glucan_exporter_l 100.0 3E-34 6.5E-39 281.8 18.3 205 199-436 17-226 (229)
215 cd03369 ABCC_NFT1 Domain 2 of 100.0 4.3E-34 9.3E-39 276.1 19.0 185 199-430 22-206 (207)
216 COG4559 ABC-type hemin transpo 100.0 1.6E-34 3.5E-39 262.7 14.6 212 196-437 12-231 (259)
217 PRK10771 thiQ thiamine transpo 100.0 3.3E-34 7.2E-39 281.8 17.9 201 203-437 17-220 (232)
218 cd03247 ABCC_cytochrome_bd The 100.0 3.3E-34 7.1E-39 269.9 17.0 163 199-429 16-178 (178)
219 PRK10744 pstB phosphate transp 100.0 5.5E-34 1.2E-38 285.0 19.6 203 199-437 27-245 (260)
220 PRK11300 livG leucine/isoleuci 100.0 5.1E-34 1.1E-38 284.8 19.3 220 198-436 18-243 (255)
221 cd03253 ABCC_ATM1_transporter 100.0 7E-34 1.5E-38 280.5 19.8 206 198-436 14-224 (236)
222 cd03244 ABCC_MRP_domain2 Domai 100.0 4.1E-34 8.9E-39 279.3 17.8 199 199-430 18-220 (221)
223 cd03300 ABC_PotA_N PotA is an 100.0 5.2E-34 1.1E-38 280.4 18.6 205 198-437 13-221 (232)
224 cd03262 ABC_HisP_GlnQ_permease 100.0 2.9E-34 6.2E-39 278.8 16.6 195 198-425 13-213 (213)
225 PRK14235 phosphate transporter 100.0 8.4E-34 1.8E-38 284.5 20.3 207 198-437 32-252 (267)
226 cd03299 ABC_ModC_like Archeal 100.0 6.5E-34 1.4E-38 280.1 19.0 203 200-437 14-220 (235)
227 TIGR02142 modC_ABC molybdenum 100.0 4.7E-34 1E-38 296.8 18.8 201 203-438 15-223 (354)
228 cd03246 ABCC_Protease_Secretio 100.0 4E-34 8.7E-39 267.9 16.4 157 199-425 16-173 (173)
229 PRK14241 phosphate transporter 100.0 7.4E-34 1.6E-38 283.9 19.3 208 198-437 17-243 (258)
230 TIGR01277 thiQ thiamine ABC tr 100.0 4.3E-34 9.2E-39 277.3 17.1 196 201-430 14-212 (213)
231 PRK11247 ssuB aliphatic sulfon 100.0 5.4E-34 1.2E-38 283.1 18.1 192 198-432 25-219 (257)
232 PRK14244 phosphate ABC transpo 100.0 6E-34 1.3E-38 283.4 18.3 210 198-438 18-239 (251)
233 PRK14259 phosphate ABC transpo 100.0 9.4E-34 2E-38 284.3 19.8 208 198-438 26-255 (269)
234 TIGR00968 3a0106s01 sulfate AB 100.0 9.1E-34 2E-38 279.4 19.3 204 199-437 14-221 (237)
235 TIGR02323 CP_lyasePhnK phospho 100.0 8.6E-34 1.9E-38 282.8 19.1 210 199-437 17-239 (253)
236 PRK14274 phosphate ABC transpo 100.0 1E-33 2.2E-38 283.0 19.7 208 198-438 25-245 (259)
237 COG4598 HisP ABC-type histidin 100.0 3.2E-34 6.9E-39 253.4 14.0 211 199-440 20-245 (256)
238 PRK10419 nikE nickel transport 100.0 1.1E-33 2.3E-38 283.7 19.5 209 198-437 25-242 (268)
239 PRK14245 phosphate ABC transpo 100.0 1.1E-33 2.4E-38 281.3 19.5 208 198-438 16-236 (250)
240 PRK14256 phosphate ABC transpo 100.0 1.3E-33 2.8E-38 281.2 19.9 206 198-438 17-238 (252)
241 PRK13547 hmuV hemin importer A 100.0 1E-33 2.2E-38 283.5 19.3 211 198-436 14-244 (272)
242 PRK11248 tauB taurine transpor 100.0 6.6E-34 1.4E-38 282.9 17.6 196 198-431 14-215 (255)
243 PRK14248 phosphate ABC transpo 100.0 1E-33 2.2E-38 284.3 19.2 207 198-437 34-253 (268)
244 PRK14251 phosphate ABC transpo 100.0 1.1E-33 2.3E-38 281.7 18.9 207 198-437 17-236 (251)
245 TIGR01184 ntrCD nitrate transp 100.0 3.9E-34 8.5E-39 280.6 15.5 196 201-434 1-202 (230)
246 TIGR01978 sufC FeS assembly AT 100.0 1.3E-33 2.8E-38 279.9 19.1 208 198-434 13-232 (243)
247 PRK14240 phosphate transporter 100.0 1.6E-33 3.5E-38 280.3 19.4 206 199-437 17-235 (250)
248 PRK14238 phosphate transporter 100.0 1.5E-33 3.2E-38 283.2 19.0 210 199-437 38-256 (271)
249 PRK14237 phosphate transporter 100.0 2E-33 4.4E-38 281.7 19.9 207 198-437 33-252 (267)
250 PRK03695 vitamin B12-transport 100.0 1.6E-33 3.5E-38 279.3 18.9 201 200-436 11-222 (248)
251 PRK14270 phosphate ABC transpo 100.0 1.9E-33 4.2E-38 279.8 19.2 204 198-437 17-236 (251)
252 cd03245 ABCC_bacteriocin_expor 100.0 1.7E-33 3.8E-38 274.7 18.6 198 198-428 17-219 (220)
253 PRK14239 phosphate transporter 100.0 1.5E-33 3.3E-38 280.9 18.5 206 199-437 19-237 (252)
254 PRK14272 phosphate ABC transpo 100.0 2.1E-33 4.5E-38 279.9 19.5 212 198-437 17-237 (252)
255 cd03267 ABC_NatA_like Similar 100.0 9.6E-34 2.1E-38 278.9 16.7 197 198-429 34-236 (236)
256 PRK14262 phosphate ABC transpo 100.0 2.5E-33 5.4E-38 278.9 19.3 208 198-437 16-235 (250)
257 cd03216 ABC_Carb_Monos_I This 100.0 2.8E-33 6.1E-38 259.2 18.0 146 199-427 14-162 (163)
258 PRK14275 phosphate ABC transpo 100.0 2.6E-33 5.6E-38 283.3 19.1 203 199-437 53-271 (286)
259 PRK10418 nikD nickel transport 100.0 2E-33 4.3E-38 280.0 18.0 205 199-437 17-231 (254)
260 cd03297 ABC_ModC_molybdenum_tr 100.0 1.8E-33 3.9E-38 273.2 17.1 192 203-429 16-214 (214)
261 PRK10247 putative ABC transpor 100.0 3.1E-33 6.7E-38 273.4 18.8 199 198-432 20-223 (225)
262 PRK14249 phosphate ABC transpo 100.0 3.2E-33 6.9E-38 278.2 19.2 203 199-437 18-236 (251)
263 PRK14246 phosphate ABC transpo 100.0 4.1E-33 9E-38 277.6 19.9 206 198-438 23-243 (257)
264 PRK14263 phosphate ABC transpo 100.0 9.5E-33 2.1E-37 275.6 22.5 205 198-437 21-246 (261)
265 PRK10261 glutathione transport 100.0 2E-33 4.4E-38 313.2 19.6 214 199-442 338-559 (623)
266 PRK14271 phosphate ABC transpo 100.0 4.1E-33 8.8E-38 280.4 19.9 204 198-437 34-252 (276)
267 PRK14253 phosphate ABC transpo 100.0 3.8E-33 8.1E-38 277.5 19.4 207 198-437 16-234 (249)
268 PRK09984 phosphonate/organopho 100.0 2.7E-33 5.9E-38 280.4 18.5 209 198-434 17-240 (262)
269 COG4615 PvdE ABC-type sideroph 100.0 9.3E-32 2E-36 264.7 28.5 384 3-429 73-530 (546)
270 PRK14261 phosphate ABC transpo 100.0 4E-33 8.6E-38 277.9 19.3 208 198-437 19-238 (253)
271 cd03230 ABC_DR_subfamily_A Thi 100.0 2.5E-33 5.4E-38 262.5 16.5 158 199-425 14-173 (173)
272 PRK14236 phosphate transporter 100.0 6.3E-33 1.4E-37 278.9 20.2 208 198-437 38-257 (272)
273 cd03215 ABC_Carb_Monos_II This 100.0 1.5E-33 3.3E-38 266.2 14.8 165 200-425 15-182 (182)
274 cd03229 ABC_Class3 This class 100.0 3E-33 6.6E-38 263.2 16.5 161 198-424 13-178 (178)
275 cd03248 ABCC_TAP TAP, the Tran 100.0 1.6E-33 3.6E-38 275.9 15.3 195 199-425 28-226 (226)
276 KOG0927|consensus 100.0 2.6E-33 5.7E-38 286.4 16.6 227 347-588 221-506 (614)
277 PRK14254 phosphate ABC transpo 100.0 5.8E-33 1.3E-37 280.4 19.0 204 199-437 53-270 (285)
278 PLN03140 ABC transporter G fam 100.0 2.5E-32 5.4E-37 324.9 27.6 221 198-434 178-425 (1470)
279 PRK14243 phosphate transporter 100.0 6.8E-33 1.5E-37 277.5 19.3 205 198-438 23-250 (264)
280 cd03228 ABCC_MRP_Like The MRP 100.0 3.3E-33 7.1E-38 261.2 15.8 156 199-424 16-171 (171)
281 PRK14260 phosphate ABC transpo 100.0 5.4E-33 1.2E-37 277.7 18.3 205 199-437 21-244 (259)
282 COG4161 ArtP ABC-type arginine 100.0 3.7E-33 8E-38 242.4 14.5 204 200-436 17-230 (242)
283 TIGR02982 heterocyst_DevA ABC 100.0 4.8E-33 1E-37 271.3 16.8 197 198-425 18-219 (220)
284 PRK15056 manganese/iron transp 100.0 7.5E-33 1.6E-37 278.4 18.6 208 198-435 20-229 (272)
285 TIGR03740 galliderm_ABC gallid 100.0 4.5E-33 9.7E-38 272.2 16.4 195 198-433 13-210 (223)
286 PRK14265 phosphate ABC transpo 100.0 1.2E-32 2.5E-37 277.0 19.8 205 198-438 33-260 (274)
287 COG4619 ABC-type uncharacteriz 100.0 3.8E-33 8.3E-38 244.1 13.9 195 197-426 15-213 (223)
288 PRK14266 phosphate ABC transpo 100.0 1.2E-32 2.7E-37 273.9 19.5 208 198-437 16-235 (250)
289 cd03217 ABC_FeS_Assembly ABC-t 100.0 1.3E-32 2.8E-37 263.8 18.7 171 198-431 13-189 (200)
290 PRK14255 phosphate ABC transpo 100.0 8.8E-33 1.9E-37 275.3 18.1 208 198-437 18-237 (252)
291 TIGR03608 L_ocin_972_ABC putat 100.0 6.7E-33 1.5E-37 267.7 16.1 190 198-420 11-206 (206)
292 PRK14252 phosphate ABC transpo 100.0 1.6E-32 3.4E-37 275.3 19.1 206 199-437 30-250 (265)
293 PRK14258 phosphate ABC transpo 100.0 1.5E-32 3.3E-37 274.6 18.8 207 199-438 21-247 (261)
294 COG4167 SapF ABC-type antimicr 100.0 2E-32 4.4E-37 242.6 17.0 212 200-440 28-243 (267)
295 cd03234 ABCG_White The White s 100.0 1.1E-32 2.3E-37 270.0 16.7 200 198-429 20-226 (226)
296 PRK09580 sufC cysteine desulfu 100.0 2E-32 4.3E-37 272.2 18.7 212 198-434 14-233 (248)
297 TIGR01166 cbiO cobalt transpor 100.0 1.4E-32 3.1E-37 261.8 15.7 179 199-411 6-190 (190)
298 CHL00131 ycf16 sulfate ABC tra 100.0 3.9E-32 8.5E-37 270.7 19.1 211 198-433 20-238 (252)
299 cd03232 ABC_PDR_domain2 The pl 100.0 5.1E-32 1.1E-36 258.0 18.7 167 198-429 20-192 (192)
300 cd03213 ABCG_EPDR ABCG transpo 100.0 4.1E-32 8.9E-37 259.0 17.8 167 198-428 22-193 (194)
301 TIGR01187 potA spermidine/putr 100.0 1.7E-32 3.8E-37 281.7 16.3 188 217-438 1-192 (325)
302 PRK15134 microcin C ABC transp 100.0 2.7E-32 5.8E-37 300.0 18.9 209 198-438 299-517 (529)
303 TIGR03771 anch_rpt_ABC anchore 100.0 2.2E-32 4.7E-37 266.9 15.3 194 208-436 3-201 (223)
304 PRK09544 znuC high-affinity zi 100.0 6.1E-32 1.3E-36 267.8 18.3 190 198-436 17-209 (251)
305 cd03233 ABC_PDR_domain1 The pl 100.0 8.5E-32 1.8E-36 258.5 18.5 177 197-429 19-202 (202)
306 COG4604 CeuD ABC-type enteroch 100.0 1.4E-32 2.9E-37 247.1 11.7 206 197-437 13-226 (252)
307 PRK14264 phosphate ABC transpo 100.0 1.2E-31 2.6E-36 273.5 20.1 218 200-437 60-290 (305)
308 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 7.3E-32 1.6E-36 263.3 16.8 185 198-429 35-224 (224)
309 PRK13549 xylose transporter AT 100.0 6.9E-32 1.5E-36 295.2 18.3 207 198-434 275-492 (506)
310 cd03231 ABC_CcmA_heme_exporter 100.0 1E-31 2.2E-36 258.0 17.0 184 198-420 13-198 (201)
311 COG4148 ModC ABC-type molybdat 100.0 4.2E-32 9.1E-37 256.5 13.9 196 204-437 17-219 (352)
312 PRK10762 D-ribose transporter 100.0 7.6E-32 1.6E-36 294.5 18.0 205 200-434 267-482 (501)
313 PRK09700 D-allose transporter 100.0 1.2E-31 2.6E-36 293.8 19.0 201 200-431 278-493 (510)
314 PRK13546 teichoic acids export 100.0 2.4E-31 5.2E-36 265.0 19.0 193 197-437 36-233 (264)
315 PRK11288 araG L-arabinose tran 100.0 1.1E-31 2.3E-36 293.3 17.7 206 200-434 268-483 (501)
316 PRK13538 cytochrome c biogenes 100.0 1.4E-31 3.1E-36 257.7 16.3 186 198-420 14-202 (204)
317 COG4525 TauB ABC-type taurine 100.0 7.9E-32 1.7E-36 241.7 13.1 202 193-432 13-220 (259)
318 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-31 3.1E-36 292.6 17.8 208 200-435 278-491 (510)
319 KOG0058|consensus 100.0 1.6E-31 3.4E-36 284.1 17.2 121 482-602 484-605 (716)
320 cd03291 ABCC_CFTR1 The CFTR su 100.0 5.3E-31 1.2E-35 264.3 19.8 193 199-437 51-248 (282)
321 TIGR03269 met_CoM_red_A2 methy 100.0 2.1E-31 4.6E-36 292.5 18.4 205 198-435 297-516 (520)
322 cd03250 ABCC_MRP_domain1 Domai 100.0 2.9E-31 6.2E-36 255.7 16.7 179 199-424 19-204 (204)
323 PRK13543 cytochrome c biogenes 100.0 3.4E-31 7.3E-36 257.0 16.5 186 198-422 24-212 (214)
324 TIGR02324 CP_lyasePhnL phospho 100.0 2.3E-31 4.9E-36 260.4 15.4 190 198-420 21-222 (224)
325 TIGR02633 xylG D-xylose ABC tr 100.0 3.2E-31 7E-36 289.9 18.2 205 198-432 273-488 (500)
326 cd03290 ABCC_SUR1_N The SUR do 100.0 4.7E-31 1E-35 257.0 17.2 192 199-424 15-218 (218)
327 TIGR01257 rim_protein retinal- 100.0 3.4E-31 7.4E-36 316.5 19.3 204 198-435 943-1148(2272)
328 cd03223 ABCD_peroxisomal_ALDP 100.0 3.8E-31 8.2E-36 245.7 14.8 150 199-424 15-164 (166)
329 PRK13540 cytochrome c biogenes 100.0 5.4E-31 1.2E-35 252.8 16.3 183 198-418 14-197 (200)
330 PRK13545 tagH teichoic acids e 100.0 1.1E-30 2.5E-35 275.0 18.5 192 198-437 37-233 (549)
331 PRK13539 cytochrome c biogenes 100.0 8.1E-31 1.7E-35 252.9 16.0 184 198-422 15-200 (207)
332 TIGR01189 ccmA heme ABC export 100.0 1.1E-30 2.3E-35 250.5 16.5 182 198-418 13-196 (198)
333 cd03237 ABC_RNaseL_inhibitor_d 100.0 7.6E-31 1.6E-35 258.8 15.8 178 200-425 9-194 (246)
334 PRK10982 galactose/methyl gala 100.0 9.2E-31 2E-35 285.4 18.0 207 199-432 262-476 (491)
335 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 1.2E-30 2.7E-35 236.0 15.1 130 199-424 14-144 (144)
336 COG1119 ModF ABC-type molybden 100.0 2.3E-30 5E-35 242.6 16.0 199 198-429 44-255 (257)
337 TIGR01257 rim_protein retinal- 100.0 1.6E-30 3.5E-35 310.8 18.4 206 198-437 1952-2160(2272)
338 COG4152 ABC-type uncharacteriz 100.0 1.1E-30 2.3E-35 242.7 12.6 201 197-436 14-219 (300)
339 PRK10535 macrolide transporter 100.0 3.2E-30 7E-35 288.5 18.4 206 198-435 21-231 (648)
340 PLN03211 ABC transporter G-25; 100.0 3.2E-30 6.9E-35 287.0 18.0 207 197-436 80-296 (659)
341 PRK15177 Vi polysaccharide exp 100.0 3.3E-30 7.1E-35 249.3 14.5 185 200-435 2-191 (213)
342 cd03222 ABC_RNaseL_inhibitor T 100.0 5.5E-30 1.2E-34 238.3 15.0 136 198-426 13-151 (177)
343 PRK13541 cytochrome c biogenes 100.0 6.3E-30 1.4E-34 244.4 15.8 177 199-417 15-192 (195)
344 cd03238 ABC_UvrA The excision 100.0 1.5E-29 3.2E-34 235.1 16.8 155 198-425 8-166 (176)
345 cd03236 ABC_RNaseL_inhibitor_d 100.0 2.7E-30 5.9E-35 255.8 12.4 191 199-429 15-220 (255)
346 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.1E-29 4.5E-34 232.3 16.4 143 199-424 13-157 (157)
347 PRK10938 putative molybdenum t 100.0 1.4E-29 3E-34 276.3 17.3 206 199-430 274-486 (490)
348 PRK15064 ABC transporter ATP-b 100.0 2.4E-29 5.2E-34 276.7 18.5 189 200-436 334-525 (530)
349 COG2274 SunT ABC-type bacterio 100.0 2.3E-30 4.9E-35 286.1 8.6 121 482-602 489-610 (709)
350 COG4674 Uncharacterized ABC-ty 100.0 2.4E-29 5.2E-34 225.8 11.4 217 196-438 16-237 (249)
351 COG4586 ABC-type uncharacteriz 100.0 2.5E-29 5.4E-34 237.3 12.0 205 200-436 39-246 (325)
352 TIGR00955 3a01204 The Eye Pigm 100.0 6.8E-29 1.5E-33 276.6 17.4 207 197-435 37-255 (617)
353 KOG0062|consensus 100.0 1.1E-29 2.4E-34 258.5 9.1 228 346-588 197-479 (582)
354 PRK10636 putative ABC transpor 100.0 1.1E-28 2.4E-33 275.4 16.7 187 199-434 326-515 (638)
355 PLN03073 ABC transporter F fam 100.0 3.2E-28 6.9E-33 272.4 19.3 186 200-434 524-712 (718)
356 COG1101 PhnK ABC-type uncharac 100.0 1.4E-28 3E-33 224.5 13.1 208 197-429 18-231 (263)
357 COG4107 PhnK ABC-type phosphon 100.0 4.1E-28 8.9E-33 213.6 15.0 221 197-446 18-251 (258)
358 PRK00635 excinuclease ABC subu 100.0 4.2E-28 9.2E-33 285.6 19.9 188 330-526 791-991 (1809)
359 PRK11819 putative ABC transpor 100.0 3.9E-28 8.4E-33 268.1 17.8 192 199-437 338-534 (556)
360 PRK13409 putative ATPase RIL; 100.0 1.9E-28 4.2E-33 269.5 15.3 179 201-430 355-536 (590)
361 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.8E-28 1E-32 267.3 17.6 189 199-434 336-529 (552)
362 COG0396 sufC Cysteine desulfur 100.0 9.7E-28 2.1E-32 222.1 16.4 209 199-435 18-232 (251)
363 PRK11147 ABC transporter ATPas 100.0 4E-28 8.6E-33 271.6 16.8 189 199-434 333-526 (635)
364 TIGR00956 3a01205 Pleiotropic 100.0 4.9E-28 1.1E-32 289.4 18.3 202 199-433 777-990 (1394)
365 COG1245 Predicted ATPase, RNas 99.9 2.4E-28 5.3E-33 244.9 9.8 203 334-560 200-422 (591)
366 COG1134 TagH ABC-type polysacc 99.9 2.6E-27 5.6E-32 222.5 14.4 195 198-436 40-236 (249)
367 COG4136 ABC-type uncharacteriz 99.9 3E-26 6.4E-31 197.1 15.8 190 196-420 13-207 (213)
368 TIGR02868 CydC thiol reductant 99.9 1.3E-27 2.9E-32 263.5 9.4 120 482-602 351-471 (529)
369 PLN03140 ABC transporter G fam 99.9 1.3E-26 2.7E-31 276.3 17.9 200 199-432 894-1106(1470)
370 COG1132 MdlB ABC-type multidru 99.9 1.8E-27 3.9E-32 264.3 9.9 122 481-602 344-466 (567)
371 KOG0057|consensus 99.9 1.6E-27 3.4E-32 245.2 8.6 120 482-602 368-488 (591)
372 COG4178 ABC-type uncharacteriz 99.9 4.4E-24 9.5E-29 227.2 33.1 229 143-421 331-587 (604)
373 PRK11174 cysteine/glutathione 99.9 7.6E-27 1.7E-31 260.7 10.4 120 482-602 366-486 (588)
374 COG4778 PhnL ABC-type phosphon 99.9 2.1E-26 4.5E-31 202.2 10.3 191 199-421 25-226 (235)
375 cd03270 ABC_UvrA_I The excisio 99.9 3.2E-26 6.9E-31 223.4 12.5 97 331-429 120-226 (226)
376 TIGR03797 NHPM_micro_ABC2 NHPM 99.9 2.1E-26 4.5E-31 261.3 11.1 121 482-602 469-589 (686)
377 COG0488 Uup ATPase components 99.9 1.2E-25 2.7E-30 240.9 15.4 188 198-436 335-525 (530)
378 COG4988 CydD ABC-type transpor 99.9 2.9E-26 6.3E-31 239.7 10.2 122 480-602 335-457 (559)
379 PRK10790 putative multidrug tr 99.9 5.5E-26 1.2E-30 253.9 10.0 121 482-602 357-477 (592)
380 PF00005 ABC_tran: ABC transpo 99.9 2.9E-25 6.4E-30 199.8 12.2 136 201-378 1-137 (137)
381 cd03278 ABC_SMC_barmotin Barmo 99.9 2.4E-25 5.1E-30 212.2 11.4 164 202-422 14-190 (197)
382 COG4987 CydC ABC-type transpor 99.9 2.3E-26 4.9E-31 236.6 4.6 136 467-602 339-475 (573)
383 KOG0066|consensus 99.9 1.7E-26 3.7E-31 229.6 3.6 348 194-582 273-695 (807)
384 TIGR01193 bacteriocin_ABC ABC- 99.9 8.2E-26 1.8E-30 257.3 9.4 121 482-602 490-612 (708)
385 COG4618 ArpD ABC-type protease 99.9 9.6E-26 2.1E-30 229.8 8.7 122 481-602 351-473 (580)
386 TIGR03796 NHPM_micro_ABC1 NHPM 99.9 9.9E-26 2.1E-30 256.9 9.9 121 482-602 495-616 (710)
387 TIGR00958 3a01208 Conjugate Tr 99.9 1.4E-25 2.9E-30 254.6 10.3 121 482-602 497-618 (711)
388 COG4133 CcmA ABC-type transpor 99.9 1.7E-24 3.6E-29 194.4 14.2 179 197-413 14-195 (209)
389 PRK11176 lipid transporter ATP 99.9 2.1E-25 4.5E-30 249.0 10.2 121 482-602 359-481 (582)
390 TIGR03375 type_I_sec_LssB type 99.9 1.9E-25 4.2E-30 253.7 10.1 121 482-602 481-602 (694)
391 cd03271 ABC_UvrA_II The excisi 99.9 1.2E-24 2.7E-29 214.2 13.7 102 328-431 149-261 (261)
392 TIGR02857 CydD thiol reductant 99.9 3.6E-25 7.7E-30 244.2 10.2 121 482-602 338-459 (529)
393 PRK11160 cysteine/glutathione 99.9 3.9E-25 8.5E-30 245.3 10.4 120 482-602 356-476 (574)
394 KOG0056|consensus 99.9 1.8E-25 3.8E-30 225.4 6.4 122 481-602 553-675 (790)
395 KOG0061|consensus 99.9 2.5E-24 5.3E-29 237.5 15.8 205 197-435 42-259 (613)
396 TIGR02203 MsbA_lipidA lipid A 99.9 1.1E-24 2.3E-29 242.9 9.8 121 482-602 348-470 (571)
397 PRK13657 cyclic beta-1,2-gluca 99.9 1.6E-24 3.4E-29 241.8 9.8 121 482-602 351-472 (588)
398 TIGR02204 MsbA_rel ABC transpo 99.9 3E-24 6.4E-29 239.5 10.5 121 482-602 356-477 (576)
399 KOG0059|consensus 99.9 5.6E-24 1.2E-28 244.7 12.5 203 200-436 580-787 (885)
400 cd03279 ABC_sbcCD SbcCD and ot 99.9 4.3E-24 9.4E-29 206.8 9.7 171 212-425 28-211 (213)
401 TIGR01846 type_I_sec_HlyB type 99.9 5.7E-24 1.2E-28 241.5 10.3 121 482-602 473-594 (694)
402 KOG0060|consensus 99.9 8.2E-21 1.8E-25 196.5 31.8 194 197-423 447-642 (659)
403 cd03289 ABCC_CFTR2 The CFTR su 99.9 9.7E-24 2.1E-28 211.1 9.8 121 481-602 19-139 (275)
404 PRK10789 putative multidrug tr 99.9 1.2E-23 2.5E-28 233.5 10.3 121 482-602 331-452 (569)
405 COG1129 MglA ABC-type sugar tr 99.9 1.7E-22 3.8E-27 211.1 17.5 207 200-432 274-486 (500)
406 TIGR01842 type_I_sec_PrtD type 99.9 1.9E-23 4.1E-28 230.9 10.3 120 483-602 335-455 (544)
407 COG4138 BtuD ABC-type cobalami 99.9 1.5E-23 3.2E-28 185.1 4.2 195 205-437 19-222 (248)
408 PRK00349 uvrA excinuclease ABC 99.9 1.5E-22 3.2E-27 230.2 13.0 173 332-513 473-656 (943)
409 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1E-22 2.2E-27 202.5 9.9 186 213-421 26-242 (251)
410 cd03272 ABC_SMC3_euk Eukaryoti 99.9 1.6E-22 3.5E-27 200.4 11.3 77 343-421 154-234 (243)
411 TIGR01192 chvA glucan exporter 99.9 9.2E-23 2E-27 226.7 10.1 121 482-602 351-472 (585)
412 COG5265 ATM1 ABC-type transpor 99.9 2.8E-23 6E-28 207.3 4.7 118 484-601 281-399 (497)
413 TIGR00630 uvra excinuclease AB 99.9 1.1E-22 2.4E-27 230.6 10.2 171 332-511 471-652 (924)
414 COG4170 SapD ABC-type antimicr 99.9 3.1E-22 6.7E-27 181.8 11.0 223 199-447 21-259 (330)
415 PRK00635 excinuclease ABC subu 99.9 7.4E-22 1.6E-26 233.3 14.3 169 332-510 460-639 (1809)
416 cd03240 ABC_Rad50 The catalyti 99.9 6.3E-22 1.4E-26 189.8 11.3 161 213-422 23-197 (204)
417 KOG0927|consensus 99.9 8.1E-22 1.8E-26 202.5 8.1 186 197-429 388-588 (614)
418 PRK00349 uvrA excinuclease ABC 99.8 1.7E-20 3.7E-25 213.4 18.4 109 329-439 811-930 (943)
419 KOG0062|consensus 99.8 1.2E-20 2.7E-25 192.8 15.2 185 196-428 360-560 (582)
420 COG1245 Predicted ATPase, RNas 99.8 7.8E-21 1.7E-25 191.2 11.8 160 212-421 367-530 (591)
421 cd03274 ABC_SMC4_euk Eukaryoti 99.8 1.7E-21 3.7E-26 187.8 6.0 75 346-422 126-204 (212)
422 cd03275 ABC_SMC1_euk Eukaryoti 99.8 2.1E-20 4.6E-25 185.2 12.3 75 346-422 154-233 (247)
423 cd03244 ABCC_MRP_domain2 Domai 99.8 1.2E-20 2.7E-25 184.1 10.3 121 482-602 20-140 (221)
424 TIGR01194 cyc_pep_trnsptr cycl 99.8 8.6E-21 1.9E-25 209.8 9.0 111 482-594 358-468 (555)
425 cd03288 ABCC_SUR2 The SUR doma 99.8 1.9E-20 4E-25 186.9 10.5 121 482-602 37-157 (257)
426 COG2884 FtsE Predicted ATPase 99.8 9.3E-21 2E-25 170.3 7.0 121 469-590 6-137 (223)
427 TIGR00630 uvra excinuclease AB 99.8 4.8E-20 1E-24 209.3 14.5 104 329-434 809-923 (924)
428 COG1125 OpuBA ABC-type proline 99.8 1.1E-20 2.4E-25 177.4 7.3 116 482-599 17-140 (309)
429 COG3839 MalK ABC-type sugar tr 99.8 1.9E-20 4.1E-25 188.2 9.2 109 481-591 18-134 (338)
430 KOG0064|consensus 99.8 1.5E-17 3.3E-22 170.1 29.8 186 196-420 493-681 (728)
431 cd03276 ABC_SMC6_euk Eukaryoti 99.8 5.2E-20 1.1E-24 175.6 11.2 82 341-424 103-192 (198)
432 COG1126 GlnQ ABC-type polar am 99.8 2.3E-20 4.9E-25 171.8 7.4 113 482-598 18-140 (240)
433 KOG0065|consensus 99.8 1.4E-18 3.1E-23 195.9 22.1 207 199-435 129-350 (1391)
434 COG3842 PotA ABC-type spermidi 99.8 3.5E-20 7.6E-25 187.4 8.1 113 480-598 19-140 (352)
435 COG1120 FepC ABC-type cobalami 99.8 7.9E-20 1.7E-24 176.9 8.4 108 480-587 16-135 (258)
436 cd03252 ABCC_Hemolysin The ABC 99.8 1.2E-19 2.7E-24 179.0 9.7 121 482-602 18-139 (237)
437 cd03251 ABCC_MsbA MsbA is an e 99.8 1.7E-19 3.7E-24 177.7 10.1 120 482-601 18-138 (234)
438 cd03254 ABCC_Glucan_exporter_l 99.8 1.3E-19 2.8E-24 178.0 9.0 120 482-601 19-139 (229)
439 COG1135 AbcC ABC-type metal io 99.8 1.2E-19 2.6E-24 175.6 8.4 116 480-599 20-146 (339)
440 cd03253 ABCC_ATM1_transporter 99.8 2E-19 4.4E-24 177.4 9.8 120 482-601 17-137 (236)
441 cd03245 ABCC_bacteriocin_expor 99.8 2.5E-19 5.4E-24 174.8 10.1 120 482-601 20-140 (220)
442 COG4619 ABC-type uncharacteriz 99.8 3.2E-19 7E-24 156.9 9.1 103 482-584 19-126 (223)
443 COG1122 CbiO ABC-type cobalt t 99.8 2.4E-19 5.2E-24 173.6 8.9 111 481-591 19-139 (235)
444 KOG0065|consensus 99.8 6.2E-20 1.3E-24 206.8 4.9 201 201-432 807-1017(1391)
445 COG3840 ThiQ ABC-type thiamine 99.8 2.3E-19 5E-24 160.1 7.4 105 485-591 18-130 (231)
446 COG1116 TauB ABC-type nitrate/ 99.8 3.2E-19 6.9E-24 169.3 8.9 104 481-589 18-129 (248)
447 cd03290 ABCC_SUR1_N The SUR do 99.8 4.8E-19 1E-23 172.5 9.9 121 481-601 16-140 (218)
448 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.8 4.2E-19 9E-24 175.4 9.4 120 481-600 18-138 (238)
449 COG3845 ABC-type uncharacteriz 99.8 3.6E-18 7.7E-23 175.2 16.3 212 197-433 270-489 (501)
450 COG1136 SalX ABC-type antimicr 99.8 5.1E-19 1.1E-23 167.9 9.3 114 482-598 21-146 (226)
451 KOG0066|consensus 99.8 5.9E-19 1.3E-23 176.2 10.0 181 198-426 586-780 (807)
452 COG1121 ZnuC ABC-type Mn/Zn tr 99.8 3.9E-19 8.4E-24 171.2 8.3 106 481-589 19-138 (254)
453 cd03250 ABCC_MRP_domain1 Domai 99.8 5.8E-19 1.3E-23 170.0 9.6 109 481-602 20-128 (204)
454 COG1137 YhbG ABC-type (unclass 99.8 4.6E-20 9.9E-25 167.1 1.4 108 482-589 20-138 (243)
455 cd03248 ABCC_TAP TAP, the Tran 99.8 5.1E-19 1.1E-23 173.3 8.7 120 482-601 30-150 (226)
456 PRK10522 multidrug transporter 99.8 6.5E-19 1.4E-23 194.8 10.2 101 482-585 339-439 (547)
457 TIGR01186 proV glycine betaine 99.8 3.6E-19 7.7E-24 184.2 7.3 110 481-590 8-129 (363)
458 COG1127 Ttg2A ABC-type transpo 99.8 6E-19 1.3E-23 165.0 7.6 115 481-598 23-149 (263)
459 COG0410 LivF ABC-type branched 99.8 3E-19 6.6E-24 166.7 5.2 98 482-579 19-124 (237)
460 TIGR00960 3a0501s02 Type II (G 99.8 5.9E-19 1.3E-23 171.6 7.5 110 481-590 18-138 (216)
461 cd03261 ABC_Org_Solvent_Resist 99.8 8.7E-19 1.9E-23 172.7 8.5 108 482-589 16-135 (235)
462 cd03226 ABC_cobalt_CbiO_domain 99.8 1.1E-18 2.4E-23 168.2 9.0 108 481-591 15-127 (205)
463 PRK14257 phosphate ABC transpo 99.8 8.8E-19 1.9E-23 180.0 8.3 114 482-602 98-226 (329)
464 PRK13650 cbiO cobalt transport 99.8 8.6E-19 1.9E-23 176.8 8.0 111 481-591 22-141 (279)
465 PRK13647 cbiO cobalt transport 99.8 7.8E-19 1.7E-23 176.7 7.5 109 482-590 21-138 (274)
466 COG0411 LivG ABC-type branched 99.8 2.6E-19 5.7E-24 168.4 3.6 111 481-591 19-150 (250)
467 TIGR01166 cbiO cobalt transpor 99.8 1.1E-18 2.4E-23 166.1 7.4 108 482-589 8-126 (190)
468 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.8 1.1E-18 2.5E-23 169.9 7.7 110 481-590 19-140 (218)
469 PRK14250 phosphate ABC transpo 99.8 2E-18 4.4E-23 170.6 9.4 108 482-589 19-130 (241)
470 PRK11629 lolD lipoprotein tran 99.7 1.3E-18 2.9E-23 171.1 7.6 109 481-589 24-144 (233)
471 cd03280 ABC_MutS2 MutS2 homolo 99.7 2.8E-18 6E-23 164.5 9.6 76 352-428 94-171 (200)
472 cd03225 ABC_cobalt_CbiO_domain 99.7 1.6E-18 3.5E-23 167.9 8.0 108 482-589 17-133 (211)
473 cd03298 ABC_ThiQ_thiamine_tran 99.7 2.3E-18 5.1E-23 166.8 9.1 106 484-591 16-129 (211)
474 PRK13635 cbiO cobalt transport 99.7 1.5E-18 3.2E-23 175.0 7.9 110 482-591 23-141 (279)
475 PRK10247 putative ABC transpor 99.7 3E-18 6.5E-23 167.5 9.7 107 482-588 23-135 (225)
476 PRK11650 ugpC glycerol-3-phosp 99.7 2E-18 4.3E-23 179.2 8.6 107 482-590 20-134 (356)
477 TIGR02314 ABC_MetN D-methionin 99.7 2.2E-18 4.8E-23 177.3 8.7 109 481-589 20-139 (343)
478 PRK13637 cbiO cobalt transport 99.7 2.1E-18 4.6E-23 174.6 8.2 109 481-589 22-143 (287)
479 PRK14269 phosphate ABC transpo 99.7 2.1E-18 4.6E-23 171.1 7.9 105 481-585 17-133 (246)
480 cd03369 ABCC_NFT1 Domain 2 of 99.7 3.4E-18 7.3E-23 165.1 9.0 95 482-576 24-118 (207)
481 PF00005 ABC_tran: ABC transpo 99.7 1.3E-18 2.8E-23 156.5 5.7 101 483-589 2-103 (137)
482 cd03256 ABC_PhnC_transporter A 99.7 3E-18 6.6E-23 169.6 8.5 109 481-589 16-143 (241)
483 TIGR02673 FtsE cell division A 99.7 2.1E-18 4.6E-23 167.5 7.2 108 482-589 18-136 (214)
484 cd03260 ABC_PstB_phosphate_tra 99.7 3E-18 6.4E-23 168.0 8.0 107 481-587 15-136 (227)
485 PRK13652 cbiO cobalt transport 99.7 3.3E-18 7.1E-23 172.5 8.3 111 481-591 19-138 (277)
486 cd03292 ABC_FtsE_transporter F 99.7 2.2E-18 4.9E-23 167.3 6.7 110 481-590 16-136 (214)
487 cd03266 ABC_NatA_sodium_export 99.7 2.8E-18 6.1E-23 167.1 7.2 107 482-589 21-135 (218)
488 PRK11432 fbpC ferric transport 99.7 3.1E-18 6.7E-23 177.2 7.9 107 482-590 22-136 (351)
489 cd03259 ABC_Carb_Solutes_like 99.7 3.3E-18 7.2E-23 165.9 7.6 107 482-590 16-130 (213)
490 PRK09536 btuD corrinoid ABC tr 99.7 4.2E-18 9.2E-23 178.4 8.8 108 482-589 19-138 (402)
491 COG1131 CcmA ABC-type multidru 99.7 5.8E-18 1.3E-22 171.1 9.4 104 480-584 19-130 (293)
492 cd03258 ABC_MetN_methionine_tr 99.7 3.9E-18 8.5E-23 167.8 7.9 110 481-590 20-140 (233)
493 cd03265 ABC_DrrA DrrA is the A 99.7 4.6E-18 1E-22 165.8 8.3 107 482-589 16-130 (220)
494 TIGR03265 PhnT2 putative 2-ami 99.7 3.6E-18 7.9E-23 177.0 7.9 107 482-590 20-134 (353)
495 TIGR02315 ABC_phnC phosphonate 99.7 4.7E-18 1E-22 168.5 8.4 108 482-589 18-144 (243)
496 KOG2355|consensus 99.7 3.3E-17 7.2E-22 148.8 13.1 199 199-430 28-231 (291)
497 TIGR01277 thiQ thiamine ABC tr 99.7 4.9E-18 1.1E-22 164.7 8.3 106 484-591 16-129 (213)
498 cd03239 ABC_SMC_head The struc 99.7 2.1E-17 4.5E-22 154.7 12.0 73 348-422 95-172 (178)
499 cd03235 ABC_Metallic_Cations A 99.7 4E-18 8.6E-23 165.4 7.5 104 481-589 14-131 (213)
500 cd03219 ABC_Mj1267_LivG_branch 99.7 4.5E-18 9.7E-23 167.8 7.9 109 481-589 15-142 (236)
No 1
>KOG0055|consensus
Probab=100.00 E-value=1e-75 Score=652.90 Aligned_cols=406 Identities=25% Similarity=0.343 Sum_probs=272.7
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHH--H
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITV--F 77 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~ 77 (602)
-..+.|...++|.++++.+++++++|||++..|++.+|+++|++.|++.+..-+..++..+...+..++ +..|. +
T Consensus 96 ~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltl 175 (1228)
T KOG0055|consen 96 MRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTL 175 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999988777777666554433222 11121 1
Q ss_pred HHHHHHHHHHHH---HH---HHHHHHHHHHhhcccchhhhhcchh-----------HHHHHHHHHHhhhh-----hHHH-
Q psy3001 78 FYGFVISLGTLF---AA---KRLHEKLLKSMLRWSPLFFDTTPVG-----------RVLSRFSSDVNTLD-----NKLT- 134 (602)
Q Consensus 78 ~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~r~~~~~~~~~-----~~~~- 134 (602)
+.....|+.++. .. .+...+..++..+ .....++...+ +..+||.+...... ..+.
T Consensus 176 v~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~-Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~ 254 (1228)
T KOG0055|consen 176 VMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAK-AGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFK 254 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222221 11 1222233333333 22233444333 23355544222110 0110
Q ss_pred -HHHH-----------HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy3001 135 -LSVQ-----------QTLSQPFK---------------------ITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA 181 (602)
Q Consensus 135 -~~~~-----------~~~~~~~~---------------------~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 181 (602)
+..| ..++|-.. -...+....-....+..+..+..+|.+..+..+..
T Consensus 255 G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i 334 (1228)
T KOG0055|consen 255 GLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSI 334 (1228)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCC
Confidence 1111 11111100 00011112233455667778899999988765543
Q ss_pred ccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEEC
Q psy3001 182 EWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246 (602)
Q Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~ 246 (602)
+... .........++.++|+||.|+|+.. ++.+||||+|||||||++++|.|+|+|++|+|.+|
T Consensus 335 ~~~~-~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~id 413 (1228)
T KOG0055|consen 335 DPYS-KGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLID 413 (1228)
T ss_pred Cccc-ccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEc
Confidence 3211 1111122246789999999999642 27799999999999999999999999999999999
Q ss_pred CeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH
Q psy3001 247 GVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS 326 (602)
Q Consensus 247 g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (602)
|.|+++++...+|++||+|.|+ |++|..++..++.+.-...+ .+++. .....++..+++...+
T Consensus 414 G~di~~~~~~~lr~~iglV~Qe-----------PvlF~~tI~eNI~~G~~dat---~~~i~---~a~k~ana~~fi~~lp 476 (1228)
T KOG0055|consen 414 GEDIRNLNLKWLRSQIGLVSQE-----------PVLFATTIRENIRYGKPDAT---REEIE---EAAKAANAHDFILKLP 476 (1228)
T ss_pred CccchhcchHHHHhhcCeeeec-----------hhhhcccHHHHHhcCCCccc---HHHHH---HHHHHccHHHHHHhhH
Confidence 9999999999999999999998 55552222111111100000 01110 0112334445555555
Q ss_pred HHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeee
Q psy3001 327 RQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH 406 (602)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 406 (602)
.++++ .+++.|..|| |||||||||||||+++|+||+||||||+||+++++.++++|++..+|+|.|+|+|
T Consensus 477 ~g~~T--------~vge~g~qLS--GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaH 546 (1228)
T KOG0055|consen 477 DGYDT--------LVGERGVQLS--GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAH 546 (1228)
T ss_pred Hhhcc--------cccCCCCCCC--hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEee
Confidence 55544 4778888888 5999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCeEEEEeCceEEeecChhHHhhc
Q psy3001 407 RLNTIIDSDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 407 ~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
|++++++||+|++|++|+|+|.|+|+|++..
T Consensus 547 RLStIrnaD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 547 RLSTIRNADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred ehhhhhccCEEEEEECCEEEEecCHHHHHhc
Confidence 9999999999999999999999999999854
No 2
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.6e-65 Score=606.49 Aligned_cols=404 Identities=20% Similarity=0.272 Sum_probs=244.0
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHH--
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVF-- 77 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-- 77 (602)
...+.+...++|.++|++++++|++||+++++|++.+|+++|++.++..+...+..++..++++++.++ +..+.+
T Consensus 122 ~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lal 201 (1466)
T PTZ00265 122 DVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTL 201 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 456889999999999999999999999999999999999999999998877767666666554443332 122211
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHH----HHhhcccchhhhhcchh----HH-------HHHHHHHHhh----------hh
Q psy3001 78 FYGFVISLGTLF--AAKRLHEKLL----KSMLRWSPLFFDTTPVG----RV-------LSRFSSDVNT----------LD 130 (602)
Q Consensus 78 ~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~g----~~-------~~r~~~~~~~----------~~ 130 (602)
+..+.+|++.+. +..+...+.. +...+ ...+..|...| +. .++|...... ..
T Consensus 202 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~ 280 (1466)
T PTZ00265 202 CITCVFPLIYICGVICNKKVKINKKTSLLYNNN-TMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFME 280 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222211 1111111111 11111 22345555555 11 1333321110 00
Q ss_pred hH-------H-HH------HHH--------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3001 131 NK-------L-TL------SVQ--------------------QTLSQP---FKITQTLNWLVRMTSDVETNIVAVERIKE 173 (602)
Q Consensus 131 ~~-------~-~~------~~~--------------------~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~ri~~ 173 (602)
.. + .. ..| .+++.. ...+..+..+...+..++.+..+.+|+.+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ 360 (1466)
T PTZ00265 281 SLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYE 360 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 000 000000 00111122334455677889999999999
Q ss_pred HhcCCcccccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCC
Q psy3001 174 YGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEP 238 (602)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~ 238 (602)
+++.+++.+..... ...+....++|+||+|+|+.. ++++||+|+||||||||+++|+|+|+|
T Consensus 361 ii~~~~~~~~~~~~---~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 437 (1466)
T PTZ00265 361 IINRKPLVENNDDG---KKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP 437 (1466)
T ss_pred HHcCCCCCCCCCCC---ccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC
Confidence 99876543211110 111112357777777777421 278999999999999999999999999
Q ss_pred CCceEEE-CCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeecccc-ce-----eec--------
Q psy3001 239 ADGTIII-DGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQV-SL-----IFT-------- 303 (602)
Q Consensus 239 ~~G~I~i-~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~-------- 303 (602)
++|+|.+ ||.++.+++...+|++|++|+|+ |.+|..++..+..+..... .. ..+
T Consensus 438 ~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~-----------~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~ 506 (1466)
T PTZ00265 438 TEGDIIINDSHNLKDINLKWWRSKIGVVSQD-----------PLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQE 506 (1466)
T ss_pred CCCeEEEeCCcchhhCCHHHHHHhccEeccc-----------ccchhccHHHHHHhcCCCccccchhccccccccccccc
Confidence 9999999 57999999999999999999998 4444222221111110000 00 000
Q ss_pred ----------------------ccccccccc--c-ccchhHHHHHHHHH-HHHH-Hhh--cccCCcccccCCcCCCChhh
Q psy3001 304 ----------------------EDVKPLIIT--P-FCSNLQRFYVATSR-QLKR-LES--VSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 304 ----------------------~~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~-l~~--~~~~~~~~~~~~~lsgs~Gq 354 (602)
....+.+.. + .....++....... .++. +.. .+.+..+++.+..+| |||
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LS--GGQ 584 (1466)
T PTZ00265 507 NKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLS--GGQ 584 (1466)
T ss_pred cccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCC--HHH
Confidence 000000000 0 00000011111000 0011 111 112233566777888 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCc
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKG 423 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G 423 (602)
||||+|||||+++|+|||||||||+||+.++..+.+.|++.. +++|+|+||||++++..||+|++|++|
T Consensus 585 kQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 585 KQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999875 479999999999999789999999986
No 3
>KOG0054|consensus
Probab=100.00 E-value=2.6e-63 Score=566.68 Aligned_cols=383 Identities=22% Similarity=0.311 Sum_probs=245.8
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---------H
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVT---------I 74 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 74 (602)
..|+|+-..+-..+|+|.++++-..=....+|+++|-+++|++.+.+.... +..+....+.++..+.++ .
T Consensus 268 ~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~~LG~sa~~ 346 (1381)
T KOG0054|consen 268 RVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYGLLGPSALA 346 (1381)
T ss_pred hhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 345666667777888999999888878889999999999999999987543 333444433332222211 1
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcccchhhhhcchh-HHH------HHHHHHHhh--------hh------h
Q psy3001 75 TVFFYGFVISLGTLF--AAKRLHEKLLKSMLRWSPLFFDTTPVG-RVL------SRFSSDVNT--------LD------N 131 (602)
Q Consensus 75 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~------~r~~~~~~~--------~~------~ 131 (602)
...++.+++|+-.+. ...+.+.+.++..-+ ......|...| +.. +.|.+.+.. +. .
T Consensus 347 G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~-Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~ 425 (1381)
T KOG0054|consen 347 GVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDE-RIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSA 425 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111222221111 112222222211111 22234555555 222 112111111 00 0
Q ss_pred ---HHH---------HHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 132 ---KLT---------LSVQQ----------------TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 132 ---~~~---------~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
.+. .+++. .+++...+-.|+..+-.....+.++.++++|+.+|+..++..+.
T Consensus 426 ~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~ 505 (1381)
T KOG0054|consen 426 LNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPD 505 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 000 00000 01112223345555667777888899999999999876543322
Q ss_pred ccC-------------CCCCCCCCCC-CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 184 VND-------------KKPKDEWPEK-GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 184 ~~~-------------~~~~~~~~~~-~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
... ......|... ....++|+||.+++| +.+||||+.|||||+|+.+|.|..+..+|++.++|
T Consensus 506 ~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G-~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-- 582 (1381)
T KOG0054|consen 506 SVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKG-QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-- 582 (1381)
T ss_pred ccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCC-CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC--
Confidence 111 1112234432 234899999999988 99999999999999999999999999999999999
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH--
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-- 327 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 327 (602)
.++|+||. ||++ + .++++++.+....+.+++ ...-+
T Consensus 583 -----------siaYv~Q~-----------pWI~-------------n------gTvreNILFG~~~d~~rY-~~Vi~aC 620 (1381)
T KOG0054|consen 583 -----------SVAYVPQQ-----------PWIQ-------------N------GTVRENILFGSPYDEERY-DKVIKAC 620 (1381)
T ss_pred -----------eEEEeccc-----------cHhh-------------C------CcHHHhhhcCccccHHHH-HHHHHHc
Confidence 38999997 7776 3 334444443332222222 11111
Q ss_pred -HHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHH-HHHHhccccEEEE
Q psy3001 328 -QLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS-TIRSEFAHCTVLT 403 (602)
Q Consensus 328 -~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~ 403 (602)
..+.++. .+....+++.|.+|| |||||||+||||+++|++|++||.|.|++|.++.+++.+ .++...+++|+|+
T Consensus 621 ~L~~Dle~Lp~GD~TeIGErGinLS--GGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~IL 698 (1381)
T KOG0054|consen 621 ALKKDLEILPFGDLTEIGERGINLS--GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVIL 698 (1381)
T ss_pred cCHhHHhhcCCCCcceecCCccCCc--HhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEE
Confidence 1122222 233456888899999 599999999999999999999999999999999887764 5555667899999
Q ss_pred eeecccccccCCeEEEEeCceEEeecChhHHh
Q psy3001 404 IAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
|||.++.+..||.|++|++|+|.+.|+++|++
T Consensus 699 VTHql~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 699 VTHQLQFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred EeCchhhhhhCCEEEEecCCeEecccCHHHHH
Confidence 99999999999999999999999999998877
No 4
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.1e-62 Score=591.51 Aligned_cols=378 Identities=19% Similarity=0.261 Sum_probs=234.2
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHH---
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTI----TVF--- 77 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--- 77 (602)
.+.++...++..+|+|+++++..++.+.++|++++++++|++.++.... .+..++...+.++..+.++. +..
T Consensus 368 ~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g 446 (1622)
T PLN03130 368 VGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIG 446 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778899999999999999999999999999999999998763 33444443333322211111 000
Q ss_pred --HHHHHHHHHHHH--HHHHHHHHHHHHhhcccchhhhhcchh----HHH---HHHHHHHhh-----------------h
Q psy3001 78 --FYGFVISLGTLF--AAKRLHEKLLKSMLRWSPLFFDTTPVG----RVL---SRFSSDVNT-----------------L 129 (602)
Q Consensus 78 --~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~---~r~~~~~~~-----------------~ 129 (602)
++.+++++..+. ...+.+.+..+...+ ....+.|...| +.+ +++.+..+. +
T Consensus 447 ~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~-r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~ 525 (1622)
T PLN03130 447 SLMLVLMFPIQTFIISKMQKLTKEGLQRTDK-RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAF 525 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111111 111122222222111 12234444444 111 111110000 0
Q ss_pred hhHH----H-----------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Q psy3001 130 DNKL----T-----------------LSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVN 185 (602)
Q Consensus 130 ~~~~----~-----------------~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 185 (602)
...+ . ++.+.+ +.+...+..|+..+......+.++..+++|+.++++.++......
T Consensus 526 ~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~ 605 (1622)
T PLN03130 526 NSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN 605 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC
Confidence 0000 0 011111 112233445666677788889999999999999987544321100
Q ss_pred CCCCCCCCCCCCcEEEeeeEEEE----------------ecCCceEEEEeccCCChhHHHHHHhcccCCCC-ceEEECCe
Q psy3001 186 DKKPKDEWPEKGEVEFKDYKVRY----------------REGLELVGIVGRTGAGKSSLTLALFRIIEPAD-GTIIIDGV 248 (602)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~vs~~~----------------~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~-G~I~i~g~ 248 (602)
.. . .+..+.++|+|++|+| ++| +.++|+|+||||||||+++|.|+++|++ |+|.+
T Consensus 606 ~~-~---~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--- 677 (1622)
T PLN03130 606 PP-L---EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVG-SLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI--- 677 (1622)
T ss_pred Cc-c---cCCCCceEEEeeEEEccCCCCCceeeceeEEecCC-CEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE---
Confidence 00 0 0011235555555555 444 8899999999999999999999999999 99975
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHH
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ 328 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (602)
+..|+||+|+ |++| +++ +++++........ +.+...-+.
T Consensus 678 ----------~~~Iayv~Q~-----------p~Lf-------------ngT------IreNI~fg~~~d~-e~y~~vl~a 716 (1622)
T PLN03130 678 ----------RGTVAYVPQV-----------SWIF-------------NAT------VRDNILFGSPFDP-ERYERAIDV 716 (1622)
T ss_pred ----------cCeEEEEcCc-----------cccC-------------CCC------HHHHHhCCCcccH-HHHHHHHHH
Confidence 4579999998 6666 333 3333322211111 111111111
Q ss_pred ---HHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHH-HHHHHhccccEEE
Q psy3001 329 ---LKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ-STIRSEFAHCTVL 402 (602)
Q Consensus 329 ---~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~~~~tvi 402 (602)
.+.++. .+....+++.|.+|| |||||||+||||++++|+|+|||||||+||+++++.+. +.++...+++|+|
T Consensus 717 ~~L~~di~~LP~Gd~T~IGe~G~~LS--GGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvI 794 (1622)
T PLN03130 717 TALQHDLDLLPGGDLTEIGERGVNIS--GGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRV 794 (1622)
T ss_pred hCcHHHHHhCCCcccccccCCCCCCC--HHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEE
Confidence 111222 233445778888888 59999999999999999999999999999999998775 4566555789999
Q ss_pred EeeecccccccCCeEEEEeCceEEeecChhHHh
Q psy3001 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+|||+++.+..||+|++|++|++++.|++++++
T Consensus 795 lVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 795 LVTNQLHFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred EEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999998877664
No 5
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.2e-62 Score=591.32 Aligned_cols=384 Identities=20% Similarity=0.268 Sum_probs=233.4
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTITV----FFY- 79 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~- 79 (602)
.+.++...++..+|+|+++++..+|++.++|++++++++|++.+++.. ..+..++...+.++..+.++... .+.
T Consensus 368 ~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~ 446 (1495)
T PLN03232 368 VGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLFG 446 (1495)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455666777779999999999999999999999999999999999875 33444444333332222111110 000
Q ss_pred ----HHHHHHHHHH--HHHHHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHH---H-Hhh------h---
Q psy3001 80 ----GFVISLGTLF--AAKRLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSS---D-VNT------L--- 129 (602)
Q Consensus 80 ----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~---~-~~~------~--- 129 (602)
.+++++..+. ...+.+.+..+...+ ......|...| +.+ +++.. + ... .
T Consensus 447 ~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~-r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~ 525 (1495)
T PLN03232 447 SLILFLLIPLQTLIVRKMRKLTKEGLQWTDK-RVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAF 525 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 111112222222111 12234444444 111 11111 0 000 0
Q ss_pred hhHHH---------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Q psy3001 130 DNKLT---------------------LSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVN 185 (602)
Q Consensus 130 ~~~~~---------------------~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 185 (602)
...+. ++.+.+ +.+...+..|+..+...+..+.++..+++|+.++++.+++.....
T Consensus 526 ~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~ 605 (1495)
T PLN03232 526 NSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN 605 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc
Confidence 00000 011111 112334455667777888889999999999999997654321100
Q ss_pred CCCC-----------CCCCCCC-CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC
Q psy3001 186 DKKP-----------KDEWPEK-GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253 (602)
Q Consensus 186 ~~~~-----------~~~~~~~-~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~ 253 (602)
.... ...|+.. ....++|+||++++| +.++|+|+||||||||+++|.|+++|++|.+.
T Consensus 606 ~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--------- 675 (1495)
T PLN03232 606 PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVG-SLVAIVGGTGEGKTSLISAMLGELSHAETSSV--------- 675 (1495)
T ss_pred CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---------
Confidence 0000 0112211 123345555555555 88999999999999999999999999998763
Q ss_pred ChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH--HHHHH
Q psy3001 254 GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS--RQLKR 331 (602)
Q Consensus 254 ~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 331 (602)
.+++.|+||+|+ |++| ++++ ++++......+.++...... ...+.
T Consensus 676 ---~~~~~Iayv~Q~-----------p~Lf-------------~gTI------reNI~fg~~~~~e~~~~vl~~~~L~~d 722 (1495)
T PLN03232 676 ---VIRGSVAYVPQV-----------SWIF-------------NATV------RENILFGSDFESERYWRAIDVTALQHD 722 (1495)
T ss_pred ---EecCcEEEEcCc-----------cccc-------------cccH------HHHhhcCCccCHHHHHHHHHHhCCHHH
Confidence 246789999998 6666 3333 33322211111111111110 01111
Q ss_pred Hhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHH-HHHhccccEEEEeeecc
Q psy3001 332 LES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQST-IRSEFAHCTVLTIAHRL 408 (602)
Q Consensus 332 l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~l 408 (602)
++. .+....+++.|.+|| |||||||+||||++++|+|+|||||||+||+++++.+.+. ++...+++|+|+|||++
T Consensus 723 i~~Lp~Gd~T~IGe~G~~LS--GGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~ 800 (1495)
T PLN03232 723 LDLLPGRDLTEIGERGVNIS--GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQL 800 (1495)
T ss_pred HHhCCCCCCceecCCCcccC--HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECCh
Confidence 221 223445778888888 5999999999999999999999999999999999888654 55555789999999999
Q ss_pred cccccCCeEEEEeCceEEeecChhHHh
Q psy3001 409 NTIIDSDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 409 ~~i~~~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+.+..||+|++|++|++++.|++++++
T Consensus 801 ~~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 801 HFLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred hhHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999889999999999999998876654
No 6
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2.3e-60 Score=572.36 Aligned_cols=381 Identities=18% Similarity=0.261 Sum_probs=231.9
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHH---
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV----TITVF--- 77 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--- 77 (602)
.+.++...++..+|+|+++++..++++.++|++++++++|++.+..... .+..++...+.+++.+.. ..+..
T Consensus 385 ~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~ 463 (1522)
T TIGR00957 385 SGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLAT-YINMIWSAPLQVILALYFLWLNLGPSVLAG 463 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4678888899999999999999999999999999999999999987542 333333333322221111 11010
Q ss_pred --HHHHHHHHHHHH--HHHHHHHHHHHHhhcccchhhhhcchh-H---HH-------HHHHH----HHhh---------h
Q psy3001 78 --FYGFVISLGTLF--AAKRLHEKLLKSMLRWSPLFFDTTPVG-R---VL-------SRFSS----DVNT---------L 129 (602)
Q Consensus 78 --~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g-~---~~-------~r~~~----~~~~---------~ 129 (602)
+..+++++.... ...+.+.+..+...+ ......|...| + .+ +++.+ .... +
T Consensus 464 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~ 542 (1522)
T TIGR00957 464 VAVMVLMVPLNAVMAMKTKTYQVAHMKSKDN-RIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV 542 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111111 111222222222221 12233444443 1 11 11111 0000 0
Q ss_pred hhHHHH---------HH--------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 130 DNKLTL---------SV--------------QQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 130 ~~~~~~---------~~--------------~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
...... ++ +.+ +.+...+..|+..+......+.++..+++||.++++.+++.+.
T Consensus 543 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~ 622 (1522)
T TIGR00957 543 GTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPD 622 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 000000 00 000 1112234456677778888899999999999999976543221
Q ss_pred ccCCCC--------------CCCCCCCCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 184 VNDKKP--------------KDEWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 184 ~~~~~~--------------~~~~~~~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
...... ...|+......++|+||++++| ++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 623 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G-~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-- 699 (1522)
T TIGR00957 623 SIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-- 699 (1522)
T ss_pred cccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--
Confidence 000000 0011111123455555555555 89999999999999999999999999999999987
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHH-
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ- 328 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 328 (602)
.++|++|+ |+++ .+ ++++++........ +.+....+.
T Consensus 700 -----------~i~yv~Q~-----------~~l~-------------~~------Ti~eNI~~g~~~~~-~~~~~~~~~~ 737 (1522)
T TIGR00957 700 -----------SVAYVPQQ-----------AWIQ-------------ND------SLRENILFGKALNE-KYYQQVLEAC 737 (1522)
T ss_pred -----------EEEEEcCC-----------cccc-------------CC------cHHHHhhcCCccCH-HHHHHHHHHh
Confidence 58999997 4444 22 22222221111011 111111111
Q ss_pred --HHHHhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHH---hccccEE
Q psy3001 329 --LKRLESV--SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS---EFAHCTV 401 (602)
Q Consensus 329 --~~~l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~---~~~~~tv 401 (602)
.+.++.. +....+++.|.++| ||||||++||||++++|++++||||||+||+.+++.+.+.+.. ..+++|+
T Consensus 738 ~l~~~l~~~~~g~~t~ig~~g~~LS--GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tv 815 (1522)
T TIGR00957 738 ALLPDLEILPSGDRTEIGEKGVNLS--GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTR 815 (1522)
T ss_pred CCHHHHHhcCCCCCceecCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEE
Confidence 1112211 22334677788888 5999999999999999999999999999999999999988853 3457999
Q ss_pred EEeeecccccccCCeEEEEeCceEEeecChhHH
Q psy3001 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 402 i~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l 434 (602)
|+|||+++.+..||+|++|++|++++.|+++++
T Consensus 816 IlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l 848 (1522)
T TIGR00957 816 ILVTHGISYLPQVDVIIVMSGGKISEMGSYQEL 848 (1522)
T ss_pred EEEeCChhhhhhCCEEEEecCCeEEeeCCHHHH
Confidence 999999999988999999999999987765544
No 7
>KOG0058|consensus
Probab=100.00 E-value=3.7e-62 Score=516.66 Aligned_cols=417 Identities=25% Similarity=0.387 Sum_probs=307.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q psy3001 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFF 78 (602)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 78 (602)
|-+.+.|+..+||..+|++++++.++|||++.+||++||+++|...+...++..+.+.+.+.+.+++.+. +.++.+.
T Consensus 212 ~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Lt 291 (716)
T KOG0058|consen 212 LQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLT 291 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 3467899999999999999999999999999999999999999999998888777777777666544332 2222211
Q ss_pred --HHHHHHHHHH---HH---HHHHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhhh---h------
Q psy3001 79 --YGFVISLGTL---FA---AKRLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNTL---D------ 130 (602)
Q Consensus 79 --~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~~---~------ 130 (602)
..+.+|..+. ++ .+++..+..+...+ .....+|...+ |.| +||....+.. .
T Consensus 292 lv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~-a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 292 LVTLIVVPIVALVAKIYGKYLRKLSKQTQDALAR-ANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222221 11 12222333344444 22334444443 222 4443322210 0
Q ss_pred ------------hHH---------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy3001 131 ------------NKL---------------TLSVQ---QTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQE 180 (602)
Q Consensus 131 ------------~~~---------------~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 180 (602)
+.. .++.+ .++.|..++...+..+..++..+.++..|.+|+.++++.+|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 000 11222 345566677778899999999999999999999999997765
Q ss_pred cccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEE
Q psy3001 181 AEWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245 (602)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i 245 (602)
.+.. . ...+ ....+.++|+||+|+|+.. +|++|||||||+||||++++|.++|+|++|+|.+
T Consensus 451 i~~~-G-~~~p-~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 451 IPLT-G-TLAP-DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CCCC-C-cccc-ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 4432 1 1111 1346889999999999642 3789999999999999999999999999999999
Q ss_pred CCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHH
Q psy3001 246 DGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVAT 325 (602)
Q Consensus 246 ~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (602)
||+|+++++...+|++|++|.|+ |++|..++..++.|.....+ .++++ .....++.++|+...
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QE-----------PvLFs~sI~eNI~YG~~~~t---~e~i~---~AAk~ANah~FI~~~ 590 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQE-----------PVLFSGSIRENIAYGLDNAT---DEEIE---AAAKMANAHEFITNF 590 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeecc-----------ceeecccHHHHHhcCCCCCC---HHHHH---HHHHHhChHHHHHhC
Confidence 99999999999999999999998 88885555444444332110 01111 011334445555554
Q ss_pred HHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEee
Q psy3001 326 SRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405 (602)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 405 (602)
++++++ .+++.|..+| |||||||||||||++||.||||||+||+||.++|..++++|.+..+++|||+|+
T Consensus 591 p~gY~T--------~VGEkG~qLS--GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIA 660 (716)
T KOG0058|consen 591 PDGYNT--------VVGEKGSQLS--GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIA 660 (716)
T ss_pred cccccc--------ccCCcccccc--chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEe
Confidence 444443 4788899999 499999999999999999999999999999999999999999998899999999
Q ss_pred ecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhh
Q psy3001 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA 449 (602)
Q Consensus 406 H~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 449 (602)
||+++++.||+|+|+++|+++|.|+|+|+++.+++.|+++.+++
T Consensus 661 HRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q 704 (716)
T KOG0058|consen 661 HRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQ 704 (716)
T ss_pred hhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHh
Confidence 99999999999999999999999999999999878898887654
No 8
>KOG0054|consensus
Probab=100.00 E-value=9.5e-60 Score=537.46 Aligned_cols=414 Identities=51% Similarity=0.778 Sum_probs=335.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy3001 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP--VTITVFFY 79 (602)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 79 (602)
+..+++++++.||+.+++++++.||+|||++|+|+|+||+++|++.+|..++..+..+++.++.++..+. ....++++
T Consensus 882 ~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fl 961 (1381)
T KOG0054|consen 882 FAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFL 961 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 4567899999999999999999999999999999999999999999999999999988888887766544 33445555
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHhhcccchh--hhhcchh----HHH---HHHHHH------Hhh---------
Q psy3001 80 GFVISLGTLF-------AAKRLHEKLLKSMLRWSPLF--FDTTPVG----RVL---SRFSSD------VNT--------- 128 (602)
Q Consensus 80 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~g----~~~---~r~~~~------~~~--------- 128 (602)
.+++|+.+++ ....+..++++...+ ++.+ +.|+..| |+| .||..+ .+.
T Consensus 962 i~~~pl~v~~~~~~~~Y~~tsReLkRLesitR-SPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a 1040 (1381)
T KOG0054|consen 962 IAIIPLGVIYYFVQRYYLATSRELKRLESITR-SPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISA 1040 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-chHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5556655544 334566677888888 6554 8888888 444 444332 111
Q ss_pred ----------hhhHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy3001 129 ----------LDNKL-----------------TLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA 181 (602)
Q Consensus 129 ----------~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 181 (602)
+.+.+ .-.+|..++|..++...++++.+...++++.+.++|||.+|.+.|+|.
T Consensus 1041 ~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~ 1120 (1381)
T KOG0054|consen 1041 NRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEA 1120 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCC
Confidence 11111 012556788999999999999999999999999999999999987773
Q ss_pred cccc-CCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEEC
Q psy3001 182 EWVN-DKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246 (602)
Q Consensus 182 ~~~~-~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~ 246 (602)
+... ...++..||..|+|+|+|++.+|+++ +|.+||||++|||||||+++|.|+.+|.+|+|.||
T Consensus 1121 p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ID 1200 (1381)
T KOG0054|consen 1121 PLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILID 1200 (1381)
T ss_pred CCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEc
Confidence 3332 23377889999999999999999875 37899999999999999999999999999999999
Q ss_pred CeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH
Q psy3001 247 GVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS 326 (602)
Q Consensus 247 g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (602)
|.|+.+++.+++|++++++||+ |++| ++++++|-+..+ ...+.+-+.+...
T Consensus 1201 gvdI~~igL~dLRsrlsIIPQd-----------PvLF-------------sGTvR~NLDPf~-----e~sD~~IW~ALe~ 1251 (1381)
T KOG0054|consen 1201 GVDISKIGLHDLRSRLSIIPQD-----------PVLF-------------SGTVRFNLDPFD-----EYSDDEIWEALER 1251 (1381)
T ss_pred CeecccccHHHHHhcCeeeCCC-----------Ccee-------------cCccccccCccc-----ccCHHHHHHHHHH
Confidence 9999999999999999999999 8888 889988854422 1122222222212
Q ss_pred HHHHHHh---hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEE
Q psy3001 327 RQLKRLE---SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLT 403 (602)
Q Consensus 327 ~~~~~l~---~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 403 (602)
..++..- ..+++..+.+.|+++| .||||.+||||||+++++||+|||+|+++|++|...|++.||+..+++||+.
T Consensus 1252 ~~Lk~~v~~~p~~Ld~~v~egG~N~S--vGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVlt 1329 (1381)
T KOG0054|consen 1252 CQLKDVVSSLPGGLDSEVSEGGENFS--VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLT 1329 (1381)
T ss_pred hChHHHHhhCCcCCCceecCCCccCC--hHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEE
Confidence 2222211 2335566888999999 5999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 404 IAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|+||++++.++|||+||++|+++|+|+|.+++++++..|+...+
T Consensus 1330 IAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1330 IAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred EeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 99999999999999999999999999999999988887764443
No 9
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1e-57 Score=547.84 Aligned_cols=119 Identities=44% Similarity=0.739 Sum_probs=116.2
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccCCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPV 563 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~~~ 563 (602)
++||+|++||+|||||+||||||||+++|+|+++|++|+|.+||+||++++.+++|++|+||||||++|+||||+||+|.
T Consensus 1328 ~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~ 1407 (1560)
T PTZ00243 1328 GVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF 1407 (1560)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 564 GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 564 ~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
...+|+++++||+.+++++++.++|+||||.|+++|.||
T Consensus 1408 ~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nL 1446 (1560)
T PTZ00243 1408 LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNY 1446 (1560)
T ss_pred cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcC
Confidence 888999999999999999999999999999999999997
No 10
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5e-58 Score=505.13 Aligned_cols=406 Identities=29% Similarity=0.414 Sum_probs=291.3
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHH-HHHHHHHHHHH--HHHHHHHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWI-NCLFSVLYLMP--VTITVFFY 79 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~ 79 (602)
...+.|+..++-.++|+|++++|++||+++++|++++|+. |.++|+++++..+...+ ..++.++++++ +..+.+.+
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~l 297 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTL 297 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999995 99999999865554444 34444333322 12222211
Q ss_pred HHH--HHHHH---HH---HHHHHHHHHHHHhhcccchhhhhcchh-----------HHHHHHHHHHhh------------
Q psy3001 80 GFV--ISLGT---LF---AAKRLHEKLLKSMLRWSPLFFDTTPVG-----------RVLSRFSSDVNT------------ 128 (602)
Q Consensus 80 ~~~--~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~r~~~~~~~------------ 128 (602)
..+ +++.+ +. ..++...+.++...+ ...+..|+..| +..++|.+....
T Consensus 298 i~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~-~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~ 376 (709)
T COG2274 298 IVLAAIPLNVLITLIFQPLLRRKTRKLIEESAE-QQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA 376 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 111 11111 11 112222233333333 33345555555 122222221000
Q ss_pred -----hhhHH-------------------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy3001 129 -----LDNKL-------------------TLSVQQTLSQ---PFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA 181 (602)
Q Consensus 129 -----~~~~~-------------------~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 181 (602)
+...+ .+++|+++++ ...+..|+..+.+++..+++...+.+|+.++++.|+|.
T Consensus 377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~ 456 (709)
T COG2274 377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ 456 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 00000 2345554443 45677889999999999999999999999999998886
Q ss_pred ccccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 182 EWVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
+... .....++-.+.+.|+||+|+|.+. +|.+||||+||||||||+|++.|+|+|++|+|.+||
T Consensus 457 ~~~~--~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg 534 (709)
T COG2274 457 EGDK--TLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG 534 (709)
T ss_pred cccc--ccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 5321 122333456899999999999653 378999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccc-------cccccccchhHH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKP-------LIITPFCSNLQR 320 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 320 (602)
.|+.+++...+|+.|++|+|+ +.+| .+++.+|-...+ .+.....+..++
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~-----------~~Lf-------------~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~ 590 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQD-----------PFLF-------------SGSIRENIALGNPEATDEEIIEAAQLAGAHE 590 (709)
T ss_pred EeHHhcCHHHHHhheeEEccc-----------chhh-------------cCcHHHHHhcCCCCCCHHHHHHHHHHhCcHH
Confidence 999999999999999999998 6666 444444321100 000001112222
Q ss_pred HHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccE
Q psy3001 321 FYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCT 400 (602)
Q Consensus 321 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 400 (602)
++...+. +.+..+++.|.++| ||||||++|||||+++|+|||||||||+||+++++.+.+.|.+...++|
T Consensus 591 fI~~lP~--------gy~t~v~E~G~~LS--GGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T 660 (709)
T COG2274 591 FIENLPM--------GYDTPVGEGGANLS--GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRT 660 (709)
T ss_pred HHHhccc--------ccccccccCCCCCC--HHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCe
Confidence 2222222 23345788899999 5999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 401 VLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 401 vi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
+|+||||+++++.||||+||++|+|++.|+|++++.. ++.|...+.
T Consensus 661 ~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~ 706 (709)
T COG2274 661 VIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQ 706 (709)
T ss_pred EEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHh
Confidence 9999999999999999999999999999999999987 666666554
No 11
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.8e-57 Score=542.83 Aligned_cols=118 Identities=42% Similarity=0.695 Sum_probs=114.5
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccCCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPV 563 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~~~ 563 (602)
++||+|++||+|||||+||||||||+++|+|+++ .+|+|.|||+|++.++.+.+|++|+||||||++|+||||+||+|.
T Consensus 1237 ~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~ 1315 (1490)
T TIGR01271 1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY 1315 (1490)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc
Confidence 4689999999999999999999999999999997 799999999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 564 GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 564 ~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
...+|+++++||+.++|++++.++|+||||+|+++|.||
T Consensus 1316 ~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nL 1354 (1490)
T TIGR01271 1316 EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVL 1354 (1490)
T ss_pred cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcC
Confidence 888999999999999999999999999999999999987
No 12
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.3e-54 Score=521.61 Aligned_cols=415 Identities=43% Similarity=0.653 Sum_probs=295.5
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV--TITVFFYG 80 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 80 (602)
...+.++++++|.+++++++++|++||+++++|++++|+++|++.++..++..+..++..++.++..++. ...++...
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~ 1057 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999998877666666655544332221 11112111
Q ss_pred HHHHHHHHH-H------HHHHHHHHHHHhhcccc--hhhhhcchh----HHH---HHHHHHHhh----------hh----
Q psy3001 81 FVISLGTLF-A------AKRLHEKLLKSMLRWSP--LFFDTTPVG----RVL---SRFSSDVNT----------LD---- 130 (602)
Q Consensus 81 ~~~~~~~~~-~------~~~~~~~~~~~~~~~~~--~~~~~~~~g----~~~---~r~~~~~~~----------~~---- 130 (602)
++++++.++ . ...++.+..+...+ ++ ..+.|+..| |++ ++|.+.... ..
T Consensus 1058 ~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~-s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1136 (1622)
T PLN03130 1058 AIMPLLVLFYGAYLYYQSTAREVKRLDSITR-SPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSN 1136 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 1 11111222222222 22 235666666 222 222221000 00
Q ss_pred -----------hHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3001 131 -----------NKL---------------------TLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETP 178 (602)
Q Consensus 131 -----------~~~---------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~ 178 (602)
..+ ..++|.++.+...+..++.++.+....++..+.+++|+.++.+.+
T Consensus 1137 ~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~ 1216 (1622)
T PLN03130 1137 RWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLP 1216 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 000 012333444555566677778888888999999999999999877
Q ss_pred cccccc-cCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceE
Q psy3001 179 QEAEWV-NDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243 (602)
Q Consensus 179 ~~~~~~-~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I 243 (602)
+|.+.. +...+...||..+.++|+||+|+|+++ +|.+||||+||||||||+++|.|+|+|++|+|
T Consensus 1217 ~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I 1296 (1622)
T PLN03130 1217 SEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296 (1622)
T ss_pred CcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 665321 112233457777899999999999643 37799999999999999999999999999999
Q ss_pred EECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHH
Q psy3001 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV 323 (602)
Q Consensus 244 ~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (602)
.+||+|+++++...+|++|++|||+ |.+| .++++.|-.... .. ..++...
T Consensus 1297 ~IDG~dI~~i~l~~LR~~IsiVpQd-----------p~LF-------------~GTIreNLd~~~-----~~-tdeei~~ 1346 (1622)
T PLN03130 1297 LIDGCDISKFGLMDLRKVLGIIPQA-----------PVLF-------------SGTVRFNLDPFN-----EH-NDADLWE 1346 (1622)
T ss_pred EECCEecccCCHHHHHhccEEECCC-----------Cccc-------------cccHHHHhCcCC-----CC-CHHHHHH
Confidence 9999999999999999999999998 6666 555554422210 00 1111111
Q ss_pred HHHH-HH-HHHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcccc
Q psy3001 324 ATSR-QL-KRLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC 399 (602)
Q Consensus 324 ~~~~-~~-~~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~ 399 (602)
+..+ .+ +.+. ..+.+..+++.|.++| ||||||+||||||+++|+|||||||||+||+++++.+++.|++..+++
T Consensus 1347 Al~~a~l~~~I~~lp~GLdt~Vge~G~nLS--gGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~ 1424 (1622)
T PLN03130 1347 SLERAHLKDVIRRNSLGLDAEVSEAGENFS--VGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1424 (1622)
T ss_pred HHHHcCcHHHHHhCccccCccccCCCCCCC--HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 1111 11 1111 1234556778888899 599999999999999999999999999999999999999999988899
Q ss_pred EEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhhh
Q psy3001 400 TVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAG 450 (602)
Q Consensus 400 tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 450 (602)
|+|+||||++++.+||||+||++|+|+|+|+|+++++++++.|+.+.+..+
T Consensus 1425 TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1425 TMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999999999999999999999876678888776544
No 13
>KOG0055|consensus
Probab=100.00 E-value=1e-54 Score=485.00 Aligned_cols=415 Identities=24% Similarity=0.338 Sum_probs=291.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCccccccc--ccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHH
Q psy3001 2 LANGSIRASKGLHLVVLRNILHSCMSFFDT--TPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITV 76 (602)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~l~~~~~~~f~~--~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 76 (602)
|...|.+..+++|...|+++++++++|||. |. |.+.+|+.+|...++..+...+..+++.+..++..++ +..|-
T Consensus 731 f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~ 809 (1228)
T KOG0055|consen 731 FGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWR 809 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999994 55 9999999999999999888888777777665544332 23332
Q ss_pred H--HHHHHHHHHHHHH-H-----HHHHHHHHHHhhcccchhhhhcchh-H----------HHHHHHHHHhh-----hhhH
Q psy3001 77 F--FYGFVISLGTLFA-A-----KRLHEKLLKSMLRWSPLFFDTTPVG-R----------VLSRFSSDVNT-----LDNK 132 (602)
Q Consensus 77 ~--~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~g-~----------~~~r~~~~~~~-----~~~~ 132 (602)
+ +...+.|++.+.. . .....+..+...+ ......|...+ | +++.+.+.... ....
T Consensus 810 lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~e-a~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~ 888 (1228)
T KOG0055|consen 810 LALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEE-ASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG 888 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222233333221 0 1111111111111 11223333332 1 22222221100 0000
Q ss_pred H----HHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3001 133 L----TLSVQQTLSQ------------------------------PFKITQTLNWLVRMTSDVETNIVAVERIKEYGETP 178 (602)
Q Consensus 133 ~----~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~ 178 (602)
. ..++.+.+.+ ...-...+.....+.+++..+..|+.+|+.+++.+
T Consensus 889 ~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~ 968 (1228)
T KOG0055|consen 889 LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRK 968 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCC
Confidence 0 0001110000 00111123344567788889999999999999987
Q ss_pred cccccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceE
Q psy3001 179 QEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243 (602)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I 243 (602)
+..+... +......+..|+++|+||+|+|+.. ++.+||||||||||||++.+|.++|+|++|.|
T Consensus 969 ~~i~~~~-~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V 1047 (1228)
T KOG0055|consen 969 PTIDPDS-TSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV 1047 (1228)
T ss_pred CCCCCCC-CCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 7443221 1111122346899999999999742 26799999999999999999999999999999
Q ss_pred EECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccc-cccccccccchhHHHH
Q psy3001 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV-KPLIITPFCSNLQRFY 322 (602)
Q Consensus 244 ~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 322 (602)
.+||+|++++++..+|+++++|.|+ |.+|..++..++.|. ... ...+++ ++ ...++.+.|+
T Consensus 1048 ~IDg~dik~lnl~~LR~~i~lVsQE-----------P~LF~~TIrENI~YG-~~~--vs~~eIi~A----ak~ANaH~FI 1109 (1228)
T KOG0055|consen 1048 KIDGVDIKDLNLKWLRKQIGLVSQE-----------PVLFNGTIRENIAYG-SEE--VSEEEIIEA----AKLANAHNFI 1109 (1228)
T ss_pred EECCcccccCCHHHHHHhcceeccC-----------chhhcccHHHHHhcc-CCC--CCHHHHHHH----HHHhhhHHHH
Confidence 9999999999999999999999998 778866555554444 111 111112 11 1445666666
Q ss_pred HHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEE
Q psy3001 323 VATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVL 402 (602)
Q Consensus 323 ~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi 402 (602)
...++++++ .+++.|.+||| |||||||||||+++||+||+|||+||+||.++++.++++|++...|+|.|
T Consensus 1110 ~sLP~GyDT--------~vGerG~QLSG--GQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~I 1179 (1228)
T KOG0055|consen 1110 SSLPQGYDT--------RVGERGVQLSG--GQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179 (1228)
T ss_pred hcCcCcccC--------ccCcccCcCCc--hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEE
Confidence 666666554 37888999995 99999999999999999999999999999999999999999999999999
Q ss_pred EeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHh
Q psy3001 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKD 448 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 448 (602)
+|+||++++.+||.|.|+++|+|+|.|+|++++.. .+.|+++.+.
T Consensus 1180 vIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~-~G~Y~~Lv~~ 1224 (1228)
T KOG0055|consen 1180 VIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAK-RGIYFRLVQL 1224 (1228)
T ss_pred EEecchhhhhcCCEEEEEECCEEEecccHHHHHhC-CCchHHHhhh
Confidence 99999999999999999999999999999999984 7778776653
No 14
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.7e-56 Score=466.28 Aligned_cols=370 Identities=29% Similarity=0.396 Sum_probs=273.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC----CceEEECCeecCCCChHHHh----hccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA----DGTIIIDGVDIRTLGLHTLR----SRLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~----~G~I~i~g~~~~~~~~~~~~----~~i~~v~Q~~ 269 (602)
...++||||...+| |++||||+|||||||++++|.|+.++. +|+|.++|.|+..++...++ +.|+++||+|
T Consensus 22 ~~~v~~vsf~v~~G-E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p 100 (539)
T COG1123 22 VPAVRDVSFEVEPG-EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP 100 (539)
T ss_pred eeeeecceEEecCC-cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCc
Confidence 35899999999999 999999999999999999999999987 89999999999998877654 6899999997
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccc--cCCc
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSH--FGET 347 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~ 347 (602)
...+. |.+ .....+.+......... ..++..+..+.++.+++.+...+ +++.
T Consensus 101 ~~sln-----P~~------------------tIg~Qi~E~~~~h~~~~---~~ea~~~a~elL~~Vgl~~~~~~~~yPhe 154 (539)
T COG1123 101 MTSLN-----PVM------------------TIGDQIREALRLHGKGS---RAEARKRAVELLEQVGLPDPERRDRYPHQ 154 (539)
T ss_pred hhhcC-----chh------------------hHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHcCCCChhhhccCCcc
Confidence 54432 111 11111111100000000 22344455666667776554444 8999
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
+|| |||||+.||+||+.+|++||+||||++||+.++.+|.+.|+++. .|.++|+||||+..+.+ ||||+||++|+
T Consensus 155 LSG--G~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~ 232 (539)
T COG1123 155 LSG--GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGE 232 (539)
T ss_pred cCc--hHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCE
Confidence 995 99999999999999999999999999999999999999999875 47999999999999999 99999999999
Q ss_pred EEeecChhHHhhcchhHHHHHHHhhhhhH-H--HHHHHh-----hhhhHHHHHHHHHHH---------hcccccccceee
Q psy3001 425 VVEFDSPSVLMKNKASIFYSMAKDAGLAW-L--AVRLET-----VGNLITFSAALLAVL---------SKETLNAGLVGL 487 (602)
Q Consensus 425 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~-----~~~~~~~~~~~~~~~---------~~~~~~~~~~~l 487 (602)
++|.|+.++++.++...|........... . ...... ........+....|. ....-.++++||
T Consensus 233 iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf 312 (539)
T COG1123 233 IVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSF 312 (539)
T ss_pred EEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeee
Confidence 99999999999988777765542211100 0 000000 000001111111111 112334668999
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeec--CCCChhhhhccceEecCCcccc---ccchhcccC-
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--RTLGLHTLRSRLTIIPQDPVLF---SGTLRLNLD- 561 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i--~~~~~~~lr~~i~~V~Qdp~lf---~~Tv~~nl~- 561 (602)
++++||++||||.+|||||||.++|+|+++|++|+|.++|.|. +.-.....|+++.+|+|||+-. ..||+++|.
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~e 392 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAE 392 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHh
Confidence 9999999999999999999999999999999999999999772 3223456788999999999642 238887763
Q ss_pred C---CC----CCcHHHHHHHHHHcCCCccccccccCCCccccCCC
Q psy3001 562 P---VG----ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599 (602)
Q Consensus 562 ~---~~----~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G 599 (602)
| .. ....+.+.+.+++++|.. .+-++|++++++|-
T Consensus 393 pL~~~~~~~~~~~~~rv~~ll~~VgL~~---~~l~ryP~elSGGQ 434 (539)
T COG1123 393 PLRIHGGGSGAERRARVAELLELVGLPP---EFLDRYPHELSGGQ 434 (539)
T ss_pred HHhhhcccchHHHHHHHHHHHHHcCCCH---HHHhcCchhcCcch
Confidence 1 11 123355888999999994 45668888887763
No 15
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.3e-53 Score=514.02 Aligned_cols=413 Identities=50% Similarity=0.755 Sum_probs=295.5
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP--VTITVFFYG 80 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 80 (602)
...+.++++++|.+++++++++|++||+++++|++++|+++|++.++..++..+..++..++.+++.++ ....+++..
T Consensus 1030 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~ 1109 (1522)
T TIGR00957 1030 SIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAV 1109 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999988777777776655544332 112222222
Q ss_pred HHHHHHHHH-HHH------HHHHHHHHHhhccc-chhhhhcchh----HHH---HHHHHHHhh-----------------
Q psy3001 81 FVISLGTLF-AAK------RLHEKLLKSMLRWS-PLFFDTTPVG----RVL---SRFSSDVNT----------------- 128 (602)
Q Consensus 81 ~~~~~~~~~-~~~------~~~~~~~~~~~~~~-~~~~~~~~~g----~~~---~r~~~~~~~----------------- 128 (602)
+++++...+ +.. .++.+..+...+.+ ...+.|+..| |++ ++|.+....
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1189 (1522)
T TIGR00957 1110 IIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANR 1189 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221111 111 11112222222211 1346666666 333 112111000
Q ss_pred --------hhhHHH-------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Q psy3001 129 --------LDNKLT-------------L---SVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWV 184 (602)
Q Consensus 129 --------~~~~~~-------------~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 184 (602)
+...+. + .++.++.+...+..++.++.+.+..++..+.+++|+.++.+.+++.+..
T Consensus 1190 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~ 1269 (1522)
T TIGR00957 1190 WLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQ 1269 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 000000 0 1223445566677788889999999999999999999999876654321
Q ss_pred -cCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 185 -NDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 185 -~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
....+...||..+.++|+||+|+|+++ +|.+||||+||||||||+++|.|+++|++|+|.+||+|
T Consensus 1270 ~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1270 IQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred ccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence 122233457778899999999999642 37899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-H
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-Q 328 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 328 (602)
+++++...+|+++++|||+ |++| .++++.|-+... .. ..++.+.+... .
T Consensus 1350 I~~i~~~~LR~~i~iVpQd-----------p~LF-------------~gTIr~NLdp~~-----~~-sdeei~~al~~a~ 1399 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQD-----------PVLF-------------SGSLRMNLDPFS-----QY-SDEEVWWALELAH 1399 (1522)
T ss_pred ccccCHHHHHhcCeEECCC-----------Cccc-------------CccHHHHcCccc-----CC-CHHHHHHHHHHcC
Confidence 9999999999999999998 6666 555554432110 01 11111111111 1
Q ss_pred H-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEee
Q psy3001 329 L-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405 (602)
Q Consensus 329 ~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 405 (602)
+ +.+.. .+.+..+++.|.++| ||||||+||||||+++|+|||||||||+||++++..+++.|++..+++|+|+||
T Consensus 1400 l~~~I~~lp~GLdt~v~e~G~~LS--gGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IA 1477 (1522)
T TIGR00957 1400 LKTFVSALPDKLDHECAEGGENLS--VGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIA 1477 (1522)
T ss_pred cHHHHhhCccCCCceecCCCCcCC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 1 11111 234555777888888 599999999999999999999999999999999999999999988899999999
Q ss_pred ecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHh
Q psy3001 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKD 448 (602)
Q Consensus 406 H~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 448 (602)
||++++.+||||+||++|+|+|+|+|++++++ ++.|+.+.++
T Consensus 1478 HRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1478 HRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred cCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 99999999999999999999999999999987 5777776654
No 16
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.9e-53 Score=508.26 Aligned_cols=416 Identities=41% Similarity=0.657 Sum_probs=290.7
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV--TITVFFYG 80 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 80 (602)
...+.++++++|.+++++++++|++||+++++|++++|+++|++.++..+...+..++..++.++..++. ....+...
T Consensus 975 ~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 1054 (1495)
T PLN03232 975 ISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLW 1054 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999998877666666654443332221 11111111
Q ss_pred HHHHHHHHH-H------HHHHHHHHHHHhhcccc--hhhhhcchh----HHH---HHHHHHH------hh----h---hh
Q psy3001 81 FVISLGTLF-A------AKRLHEKLLKSMLRWSP--LFFDTTPVG----RVL---SRFSSDV------NT----L---DN 131 (602)
Q Consensus 81 ~~~~~~~~~-~------~~~~~~~~~~~~~~~~~--~~~~~~~~g----~~~---~r~~~~~------~~----~---~~ 131 (602)
+++++...+ . ...+..+..+...+ ++ ..+.|+..| |++ ++|.+.. +. . .+
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (1495)
T PLN03232 1055 AIMPLLILFYAAYLYYQSTSREVRRLDSVTR-SPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSN 1133 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222111 1 11111222222222 22 125566655 222 2222110 00 0 00
Q ss_pred H-HH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3001 132 K-LT--------------------------------LSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETP 178 (602)
Q Consensus 132 ~-~~--------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~ 178 (602)
. +. ..++.++.+...+..++.++.+.+..++..+.+++|+.++.+.+
T Consensus 1134 ~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~ 1213 (1495)
T PLN03232 1134 RWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLP 1213 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 00 00111222333344556677788889999999999999999877
Q ss_pred cccccc-cCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceE
Q psy3001 179 QEAEWV-NDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243 (602)
Q Consensus 179 ~~~~~~-~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I 243 (602)
+|.+.. ....+...||..+.++|+||+|+|+++ +|.+||||+||||||||+++|.|+++|++|+|
T Consensus 1214 ~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1293 (1495)
T PLN03232 1214 SEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI 1293 (1495)
T ss_pred ccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE
Confidence 664421 111223346777889999999999542 37899999999999999999999999999999
Q ss_pred EECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHH
Q psy3001 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV 323 (602)
Q Consensus 244 ~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (602)
.+||+|+++++...+|+++++|||+ |++| .++++.|-+... .. ..++...
T Consensus 1294 ~IdG~di~~i~~~~lR~~i~iVpQd-----------p~LF-------------~gTIr~NL~~~~-----~~-sdeei~~ 1343 (1495)
T PLN03232 1294 MIDDCDVAKFGLTDLRRVLSIIPQS-----------PVLF-------------SGTVRFNIDPFS-----EH-NDADLWE 1343 (1495)
T ss_pred EECCEEhhhCCHHHHHhhcEEECCC-----------Ceee-------------CccHHHHcCCCC-----CC-CHHHHHH
Confidence 9999999999999999999999998 6666 555554432210 00 1111111
Q ss_pred HHHH-HH-HHHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcccc
Q psy3001 324 ATSR-QL-KRLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC 399 (602)
Q Consensus 324 ~~~~-~~-~~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~ 399 (602)
+..+ .+ +.+. ..+.+..+++.|.++| ||||||++|||||+++|+|||||||||+||+++++.+++.|++..+++
T Consensus 1344 al~~a~l~~~I~~lp~GLdt~v~e~G~~LS--gGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~ 1421 (1495)
T PLN03232 1344 ALERAHIKDVIDRNPFGLDAEVSEGGENFS--VGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSC 1421 (1495)
T ss_pred HHHHcCCHHHHHhCcCCCCceecCCCCCCC--HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCC
Confidence 1111 11 1111 1234455778888898 599999999999999999999999999999999999999999988899
Q ss_pred EEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhhhh
Q psy3001 400 TVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451 (602)
Q Consensus 400 tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 451 (602)
|+|+||||++++.+||||+||++|+++|+|+|+++++++++.|+.+.+..+.
T Consensus 1422 TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1422 TMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 9999999999999999999999999999999999998766688887765543
No 17
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1e-51 Score=460.68 Aligned_cols=407 Identities=20% Similarity=0.264 Sum_probs=268.4
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHH--
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFF-- 78 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-- 78 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++..+..++ ++.+.+.
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999887666666555444333222 1222111
Q ss_pred HHHHHHHHHHH---HHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------h--
Q psy3001 79 YGFVISLGTLF---AAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------L-- 129 (602)
Q Consensus 79 ~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~-- 129 (602)
..+.+++..+. ..+ ....+..+...+ ....+.|...| +.+ +++.+.... .
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALAR-LSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAF 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111221111 111 111112222222 11234444444 111 222211000 0
Q ss_pred --hh---HH-H-----------------HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3001 130 --DN---KL-T-----------------LSVQQT------------LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEY 174 (602)
Q Consensus 130 --~~---~~-~-----------------~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~ 174 (602)
.. .+ . +++|.+ +.+...+..|+..+...+..++.+..+.+|+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 248 LSSAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 0 000000 0111233456777778888899999999999999
Q ss_pred hcCCcccccccCCCCCCCCCCCCcEEEeeeEEE--------------EecCCceEEEEeccCCChhHHHHHHhcccCCCC
Q psy3001 175 GETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVR--------------YREGLELVGIVGRTGAGKSSLTLALFRIIEPAD 240 (602)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~--------------~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~ 240 (602)
++.+++.+...... .+.+..+.++|+||+|. +++| +.+||||+||||||||+++|+|+| |++
T Consensus 328 l~~~~~~~~~~~~~--~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G-~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 328 LETPLAHPQQGEKE--LASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAG-QRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HcCCCcccCCCccc--cCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 97665322111100 00011224555555554 4444 889999999999999999999999 999
Q ss_pred ceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhH
Q psy3001 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQ 319 (602)
Q Consensus 241 G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 319 (602)
|+|.+||+|+.+++...+|++|+||||+ |++| ++++..| +..... ...+
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~-----------~~LF-------------~~TI~eN------I~~g~~~~~~e 453 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQN-----------PQLP-------------HGTLRDN------VLLGNPDASDE 453 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCC-----------CcCC-------------CcCHHHH------hhcCCCCCCHH
Confidence 9999999999999999999999999998 6666 4444333 111100 1111
Q ss_pred HHHHHHHH-HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh
Q psy3001 320 RFYVATSR-QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE 395 (602)
Q Consensus 320 ~~~~~~~~-~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 395 (602)
+...+... .+ +.+.. .+.+..+++.|.++| ||||||++|||||+++|+|||||||||+||+++++.+.+.+++.
T Consensus 454 ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LS--GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 454 QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS--VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred HHHHHHHHhCHHHHHHhcccccccccccCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 11111110 11 11112 234455778888888 59999999999999999999999999999999999999999988
Q ss_pred ccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHh
Q psy3001 396 FAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKD 448 (602)
Q Consensus 396 ~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 448 (602)
.+++|+|+||||++.+..||+|++|++|++++.|+|+++++. ++.|..++..
T Consensus 532 ~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~-~~~y~~l~~~ 583 (588)
T PRK11174 532 SRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA-GGLFATLLAH 583 (588)
T ss_pred hCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc-chHHHHHHHH
Confidence 888999999999999999999999999999999999999876 4566665543
No 18
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=1.2e-51 Score=457.64 Aligned_cols=406 Identities=28% Similarity=0.394 Sum_probs=279.5
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFY-- 79 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-- 79 (602)
.+.++..++|.++|++++++|++||+++++|++++|+++|++.++..+......+...++.+++.+. ...+.+..
T Consensus 79 ~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 158 (567)
T COG1132 79 LGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALIL 158 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4478899999999999999999999999999999999999999999887653333323333322221 11111111
Q ss_pred HHHHHHHHH---HHHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hhhH
Q psy3001 80 GFVISLGTL---FAAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LDNK 132 (602)
Q Consensus 80 ~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~~~ 132 (602)
.+..++..+ .+.+ +...+..+...+ ....+.+...| +.+ +++....+. ....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (567)
T COG1132 159 LLILPLLALVLSLLARKSRKLSRRVREALGE-LNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEAL 237 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1111 111112222222 12234444444 111 122110000 0000
Q ss_pred H--------------------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 133 L--------------------------TLSVQ---QTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 133 ~--------------------------~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
. .+++| .++.+...+..|+..+......++.+..+.+|+.++++.+++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 317 (567)
T COG1132 238 LAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED 317 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 0 01122 234445566678888889999999999999999999997654321
Q ss_pred ccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 184 VNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
.... .....+.++|+||+|+|+++ ++.+||||+|||||||++++|+|+|+|++|+|.+||+|+
T Consensus 318 ~~~~----~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI 393 (567)
T COG1132 318 PPDP----LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI 393 (567)
T ss_pred CCCC----CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEeh
Confidence 1111 12234668899999999731 378999999999999999999999999999999999999
Q ss_pred CCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHH--
Q psy3001 251 RTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSR-- 327 (602)
Q Consensus 251 ~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-- 327 (602)
++++...+|++|++|||+ +++| .+++..| +..... ...++...+...
T Consensus 394 ~~i~~~~lr~~I~~V~Qd-----------~~LF-------------~~TI~~N------I~~g~~~at~eei~~a~k~a~ 443 (567)
T COG1132 394 RDISLDSLRKRIGIVSQD-----------PLLF-------------SGTIREN------IALGRPDATDEEIEEALKLAN 443 (567)
T ss_pred hhcCHHHHHHhccEEccc-----------ceee-------------cccHHHH------HhcCCCCCCHHHHHHHHHHhC
Confidence 999999999999999998 6666 3333333 111111 011111111111
Q ss_pred HHHHHhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEee
Q psy3001 328 QLKRLESV--SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405 (602)
Q Consensus 328 ~~~~l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 405 (602)
..+.+..+ +.+..+++.|.++| ||||||++||||++++|+|||||||||+||++++..+++.+++..+++|+++|+
T Consensus 444 ~~d~I~~lp~g~dt~vge~G~~LS--gGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 444 AHEFIANLPDGYDTIVGERGVNLS--GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred hHHHHHhCcccccceecCCCccCC--HHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEe
Confidence 12222233 34556778888899 599999999999999999999999999999999999999999877788999999
Q ss_pred ecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHh
Q psy3001 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKD 448 (602)
Q Consensus 406 H~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 448 (602)
||++++.+||+|+||++|++++.|+|+++++. ++.|+.+++.
T Consensus 522 HRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~ 563 (567)
T COG1132 522 HRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQA 563 (567)
T ss_pred ccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHH
Confidence 99999999999999999999999999999988 7788877654
No 19
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.6e-51 Score=494.37 Aligned_cols=413 Identities=35% Similarity=0.550 Sum_probs=283.9
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV--TITVFFYGFV 82 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 82 (602)
.+.++++++|.++|++++++|+.||+++++|++++|+++|++.++..+...+..++..++.+++.+++ ...+++..++
T Consensus 1025 ~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~ 1104 (1560)
T PTZ00243 1025 AMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVAL 1104 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999887776666655554433221 1112222222
Q ss_pred HHHHHHH--HHH-----HHHHHHHHHhhcc-cchhhhhcchh----HHH-------HHHHHHHhh---------------
Q psy3001 83 ISLGTLF--AAK-----RLHEKLLKSMLRW-SPLFFDTTPVG----RVL-------SRFSSDVNT--------------- 128 (602)
Q Consensus 83 ~~~~~~~--~~~-----~~~~~~~~~~~~~-~~~~~~~~~~g----~~~-------~r~~~~~~~--------------- 128 (602)
++...++ +.. .+..+......+. ....+.++..| +++ +++....+.
T Consensus 1105 i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~ 1184 (1560)
T PTZ00243 1105 VPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWL 1184 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 111 1111111111110 11245666665 222 222221000
Q ss_pred ------hhhHHH-----------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ------LDNKLT-----------------LSV---QQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ------~~~~~~-----------------~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+. .++ +.++.+...+..++.++.+.+..++..+.+++|+.++.+..++++
T Consensus 1185 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~ 1264 (1560)
T PTZ00243 1185 GVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHED 1264 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 000000 011 122334455667788888999999999999999999986432211
Q ss_pred ccc-------------------------CCCCC---CCCCCCCcEEEeeeEEEEecC--------------CceEEEEec
Q psy3001 183 WVN-------------------------DKKPK---DEWPEKGEVEFKDYKVRYREG--------------LELVGIVGR 220 (602)
Q Consensus 183 ~~~-------------------------~~~~~---~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~ 220 (602)
... ...+. ..++..+.++|+||+|+|+++ +|.+||||+
T Consensus 1265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGr 1344 (1560)
T PTZ00243 1265 MPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGR 1344 (1560)
T ss_pred cccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECC
Confidence 000 00011 112345789999999999653 377999999
Q ss_pred cCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccce
Q psy3001 221 TGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSL 300 (602)
Q Consensus 221 sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (602)
||||||||+++|.|+++|++|+|.+||+|+++++...+|+.|++|||+ |++| .+++
T Consensus 1345 TGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQd-----------p~LF-------------~gTI 1400 (1560)
T PTZ00243 1345 TGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQD-----------PVLF-------------DGTV 1400 (1560)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCC-----------Cccc-------------cccH
Confidence 999999999999999999999999999999999999999999999998 6666 4444
Q ss_pred eecccccccccccccchhHHHHHHHHH-HH-HHHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhC-CCeEEEec
Q psy3001 301 IFTEDVKPLIITPFCSNLQRFYVATSR-QL-KRLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRK-TKILILDE 375 (602)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~-p~iliLDE 375 (602)
+.|-+... .. ..++.+.+... .+ +.+. ..+.+..+++.|.++| ||||||+||||||+++ |+||||||
T Consensus 1401 reNIdp~~-----~~-sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLS--gGQrQrLaLARALL~~~~~ILlLDE 1472 (1560)
T PTZ00243 1401 RQNVDPFL-----EA-SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYS--VGQRQLMCMARALLKKGSGFILMDE 1472 (1560)
T ss_pred HHHhCccc-----CC-CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCC--HHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 44422110 00 11111111111 11 1111 1233445677888888 5999999999999996 89999999
Q ss_pred ccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhh
Q psy3001 376 ATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA 449 (602)
Q Consensus 376 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 449 (602)
|||+||+++++.+++.|++..+++|+|+||||++++..||+|+||++|+|+++|+|++++++.++.|+.+.+..
T Consensus 1473 ATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1473 ATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred CCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999998889999999999999999999999999999999999999986677787776554
No 20
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-50 Score=417.98 Aligned_cols=412 Identities=24% Similarity=0.336 Sum_probs=289.1
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHH--HHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTI--TVF 77 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~ 77 (602)
...+.++..+||..+++++.+++..+-.+.++|++.+.+...+++++.++...++..+.+.+.-+.+++ ++. ..+
T Consensus 65 ~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aal 144 (559)
T COG4988 65 YRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAAL 144 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 346778889999999999999999999999999999999999999999988888887776654433222 111 112
Q ss_pred HHHH---HHHHHHHH---HHHHHHHHHHHHhhcccchhhhhcchh----HHHHH-------HHHHHhh--------hhhH
Q psy3001 78 FYGF---VISLGTLF---AAKRLHEKLLKSMLRWSPLFFDTTPVG----RVLSR-------FSSDVNT--------LDNK 132 (602)
Q Consensus 78 ~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~r-------~~~~~~~--------~~~~ 132 (602)
++.+ ++|+.++. ..++...+.+....+++..|++ ...| |+|++ +.++... +...
T Consensus 145 Illit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD-~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriA 223 (559)
T COG4988 145 ILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLD-RLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIA 223 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22322222 2345556667777775554444 3344 44411 1111110 1100
Q ss_pred H----------HHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy3001 133 L----------TLSVQQ----------------------TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQE 180 (602)
Q Consensus 133 ~----------~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 180 (602)
+ .++++. ++...-.++.|+..+...++.-..+..+.+.+..+.+.|.+
T Consensus 224 flSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~ 303 (559)
T COG4988 224 FLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVA 303 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCC
Confidence 0 111110 01112235567788888999999999999999999987665
Q ss_pred cccccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 181 AEWVNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
..... ......+...-.+.++|++++|++| ++.+||||+||||||||+++|+|+++|++|+|.+||
T Consensus 304 ~~~~~-~~~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng 382 (559)
T COG4988 304 TPGSG-EKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNG 382 (559)
T ss_pred CCCCc-cccccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECC
Confidence 32111 1101111122334445777766553 278999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHH-HH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVA-TS 326 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 326 (602)
++..+++...||+++++|+|+ |++| .++++.|-.+.. .....++..+. ..
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~-----------p~lf-------------~gTireNi~l~~-----~~~s~e~i~~al~~ 433 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQN-----------PYLF-------------AGTIRENILLAR-----PDASDEEIIAALDQ 433 (559)
T ss_pred ccccccCHHHHHhHeeeeCCC-----------Cccc-------------cccHHHHhhccC-----CcCCHHHHHHHHHH
Confidence 999999999999999999998 6666 445444422211 00111111111 11
Q ss_pred HHHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 327 RQLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 327 ~~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
..+..+-. .+++..+++.|..+| |||+|||++||||++++++++|||||+|||.++|+.+.+.|.+..+++|+++|
T Consensus 434 a~l~~~v~~p~GLdt~ige~G~~LS--gGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~i 511 (559)
T COG4988 434 AGLLEFVPKPDGLDTVIGEGGAGLS--GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVI 511 (559)
T ss_pred hcHHHhhcCCCcccchhccCCCCCC--HHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEE
Confidence 12222212 344566788888888 59999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHh
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKD 448 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 448 (602)
|||++.+.++|+|++|++|++++.|+|++++++ ++.|+.+...
T Consensus 512 tHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~ 554 (559)
T COG4988 512 THRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQ 554 (559)
T ss_pred EcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHH
Confidence 999999999999999999999999999999887 6677766654
No 21
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=8.4e-51 Score=460.02 Aligned_cols=401 Identities=26% Similarity=0.364 Sum_probs=267.9
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 80 (602)
..+.++..++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.+. .+.+.+.+.
T Consensus 227 ~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~ 306 (711)
T TIGR00958 227 YTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMV 306 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45678899999999999999999999999999999999999999998877666655555444333222 111111111
Q ss_pred --HHHHHHHHH--HHHH----HHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh-------------
Q psy3001 81 --FVISLGTLF--AAKR----LHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT------------- 128 (602)
Q Consensus 81 --~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~------------- 128 (602)
+.+++..+. ...+ ...+..+...+ ....+.+...| +.+ +++.+..+.
T Consensus 307 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (711)
T TIGR00958 307 TLINLPLVFLAEKVFGKRYQLLSEELQEAVAK-ANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYA 385 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1111 11112222222 11233444433 111 222221110
Q ss_pred ----hhhHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .++.|. ++.+...+..++..+...+..++++..+.+|+.++++.+++.+
T Consensus 386 ~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 465 (711)
T TIGR00958 386 GYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIP 465 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 00000 012222 2334455667788888999999999999999999998765432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEec---------------CCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYRE---------------GLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~---------------~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
.... ..+.+..+.++|+||+|+|+. .++.+||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 466 ~~~~---~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 542 (711)
T TIGR00958 466 LTGT---LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542 (711)
T ss_pred CCCC---CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 1111 011123456888888888852 1278999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATS 326 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 326 (602)
+|+++++...+|++|++|+|+ |++| .++++.|-.. ... ...++......
T Consensus 543 ~~i~~~~~~~lr~~i~~v~Q~-----------~~lF-------------~gTIreNI~~------g~~~~~~e~i~~al~ 592 (711)
T TIGR00958 543 VPLVQYDHHYLHRQVALVGQE-----------PVLF-------------SGSVRENIAY------GLTDTPDEEIMAAAK 592 (711)
T ss_pred EEHHhcCHHHHHhhceEEecC-----------cccc-------------ccCHHHHHhc------CCCCCCHHHHHHHHH
Confidence 999999999999999999998 5555 3443333111 100 01111111111
Q ss_pred H-HHH-HHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEE
Q psy3001 327 R-QLK-RLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVL 402 (602)
Q Consensus 327 ~-~~~-~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi 402 (602)
. .++ .+.. .+.+..+++.|.++| ||||||++||||++++|+|||||||||+||+++++.+.+ ....+++|+|
T Consensus 593 ~a~l~~~i~~lp~GldT~ige~G~~LS--GGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvI 668 (711)
T TIGR00958 593 AANAHDFIMEFPNGYDTEVGEKGSQLS--GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVL 668 (711)
T ss_pred HcCCHHHHHhCCCccCCcccCCCCcCC--HHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEE
Confidence 0 111 1111 123445677788888 599999999999999999999999999999999999988 2334679999
Q ss_pred EeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHH
Q psy3001 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFY 443 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 443 (602)
+||||++.+..||+|++|++|++++.|+|++++++ ++.|+
T Consensus 669 iItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~-~~~y~ 708 (711)
T TIGR00958 669 LIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED-QGCYK 708 (711)
T ss_pred EEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC-CCchH
Confidence 99999999988999999999999999999999876 34454
No 22
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=1.6e-50 Score=485.58 Aligned_cols=413 Identities=28% Similarity=0.468 Sum_probs=291.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy3001 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP--VTITVFFY 79 (602)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 79 (602)
+.+.+.++++++|.+++++++++|+.||+++++|++++|+++|++.++..++..+..++..++.+++.++ ....+++.
T Consensus 949 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~ 1028 (1490)
T TIGR01271 949 LVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIF 1028 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999988777777766555444332 11122222
Q ss_pred HHHHHHHHHHH-H------HHHHHHHHHHhhcccc--hhhhhcchh----HHH-------HHHHHHHhh-----------
Q psy3001 80 GFVISLGTLFA-A------KRLHEKLLKSMLRWSP--LFFDTTPVG----RVL-------SRFSSDVNT----------- 128 (602)
Q Consensus 80 ~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~--~~~~~~~~g----~~~-------~r~~~~~~~----------- 128 (602)
.++++++++++ . ..++.+..+...+ ++ ..+.++..| |++ +++....+.
T Consensus 1029 l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~-s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1490)
T TIGR01271 1029 IAAIPVAVIFIMLRAYFLRTSQQLKQLESEAR-SPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLST 1107 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222111 1 1111222222222 11 235555555 222 222221110
Q ss_pred ---hh---hH----HH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 129 ---LD---NK----LT---------------LSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 129 ---~~---~~----~~---------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
+. .. +. ..++.++.+...+..++.++.+.+..++..+.+++|+.+|.+.+++...
T Consensus 1108 ~~wl~~~~~~i~~~~~~~~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~ 1187 (1490)
T TIGR01271 1108 LRWFQMRIDIIFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPR 1187 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 00 00 00 0122334445556667778888889999999999999999987665432
Q ss_pred ccC---------------CCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhc
Q psy3001 184 VND---------------KKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 184 ~~~---------------~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g 234 (602)
... ..++..||..+.++|+||+|+|+++ ++.+||||+||||||||+++|+|
T Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~r 1267 (1490)
T TIGR01271 1188 PSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLR 1267 (1490)
T ss_pred ccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 110 0122347777899999999999752 37799999999999999999999
Q ss_pred ccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc
Q psy3001 235 IIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF 314 (602)
Q Consensus 235 ~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (602)
+++ .+|+|.+||+|+.+++...+|+++++|||+ |++| .++++.|-+... .
T Consensus 1268 l~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQd-----------p~LF-------------~GTIR~NLdp~~-----~ 1317 (1490)
T TIGR01271 1268 LLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQK-----------VFIF-------------SGTFRKNLDPYE-----Q 1317 (1490)
T ss_pred hcC-CCcEEEECCEEcccCCHHHHHhceEEEeCC-----------CccC-------------ccCHHHHhCccc-----C
Confidence 997 799999999999999999999999999998 6666 555554432211 0
Q ss_pred cchhHHHHHHHHH-HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHH
Q psy3001 315 CSNLQRFYVATSR-QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390 (602)
Q Consensus 315 ~~~~~~~~~~~~~-~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~ 390 (602)
. ..++.+....+ .+ +.+.. .+++..+++.|.++| +|||||+||||||+++|+|||||||||+||++++..+++
T Consensus 1318 ~-tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLS--gGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~ 1394 (1490)
T TIGR01271 1318 W-SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLS--NGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK 1394 (1490)
T ss_pred C-CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCC--HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0 01111111111 01 11111 234445677788888 599999999999999999999999999999999999999
Q ss_pred HHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhh
Q psy3001 391 TIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA 449 (602)
Q Consensus 391 ~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 449 (602)
.|++..+++|||+||||++++..||+|++|++|+|+++|+|.++++. .+.|+.+.+..
T Consensus 1395 ~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~ 1452 (1490)
T TIGR01271 1395 TLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAA 1452 (1490)
T ss_pred HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHh
Confidence 99998889999999999999999999999999999999999999974 67777777643
No 23
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.6e-50 Score=446.13 Aligned_cols=406 Identities=20% Similarity=0.277 Sum_probs=268.6
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYG- 80 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~- 80 (602)
.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.++.++...+..++..++..++.++ ++.+.+.+.
T Consensus 87 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 166 (574)
T PRK11160 87 ATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTL 166 (574)
T ss_pred HHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999887777776665554433222 122221111
Q ss_pred -HHHHHHHH---HH----HHHHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hh-
Q psy3001 81 -FVISLGTL---FA----AKRLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LD- 130 (602)
Q Consensus 81 -~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~- 130 (602)
+.+++... .. .+....+..+...+ ....+.+...| +.+ +++.+..+. ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (574)
T PRK11160 167 GGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQ-YRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTG 245 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 11 11111222222222 11234444444 111 222221110 00
Q ss_pred ------hHH------------------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 131 ------NKL------------------TLSVQQTLSQP----FKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 131 ------~~~------------------~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
..+ .++.+.++... .....++..+...+..++.+..+.+|+.++++.+++.+
T Consensus 246 ~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~ 325 (574)
T PRK11160 246 LSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVT 325 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 000 00111111111 11123556666778888899999999999998765432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
..... . ..+..+.++|+||+|+|+++ ++++||+|+||||||||+++|+|+++|++|+|.+||+
T Consensus 326 ~~~~~-~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~ 402 (574)
T PRK11160 326 FPTTS-T--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQ 402 (574)
T ss_pred CCccc-C--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 11110 0 01223567788888887431 2789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHH
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSR 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 327 (602)
++++++...+|+.++++||+ |.+| .+++..|-.. ... ...++.......
T Consensus 403 ~i~~~~~~~~r~~i~~v~Q~-----------~~lf-------------~~ti~~Ni~~------~~~~~~~~~i~~al~~ 452 (574)
T PRK11160 403 PIADYSEAALRQAISVVSQR-----------VHLF-------------SATLRDNLLL------AAPNASDEALIEVLQQ 452 (574)
T ss_pred EhhhCCHHHHHhheeEEccc-----------chhh-------------cccHHHHhhc------CCCccCHHHHHHHHHH
Confidence 99999999999999999998 4444 3333322111 000 011111111110
Q ss_pred -HHHH-Hh-hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 -QLKR-LE-SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 -~~~~-l~-~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
.++. +. ..+.+..+++.|.++| ||||||++||||++++|++||||||||+||+++++.+.+.+++..+++|+|+|
T Consensus 453 ~~l~~~i~~p~GldT~vge~g~~LS--gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviii 530 (574)
T PRK11160 453 VGLEKLLEDDKGLNAWLGEGGRQLS--GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMI 530 (574)
T ss_pred cCCHHHHcCccccCchhcCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 1111 11 1222334566777888 59999999999999999999999999999999999999999988788999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|||++.+..||+|++|++|++++.|+|+++++. ++.|..+++
T Consensus 531 tHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 531 THRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred ecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc-CcHHHHHHh
Confidence 999999988999999999999999999999876 566666543
No 24
>KOG0056|consensus
Probab=100.00 E-value=9.9e-51 Score=406.43 Aligned_cols=280 Identities=26% Similarity=0.418 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCCCCCCcEEEeeeEEEEecCC-------
Q psy3001 140 TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGL------- 212 (602)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~~------- 212 (602)
+.+|.+++..|++++......+|++..-++++.+++++++|..+.....+ -...+|.++|+||+|.|+++.
T Consensus 481 f~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~p--l~~~~G~i~fsnvtF~Y~p~k~vl~dis 558 (790)
T KOG0056|consen 481 FLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPP--LKVTQGKIEFSNVTFAYDPGKPVLSDIS 558 (790)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCC--ccccCCeEEEEEeEEecCCCCceeecce
Confidence 46778888999999999999999999999999999987766432111111 112468899999999998763
Q ss_pred ------ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeee
Q psy3001 213 ------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVI 286 (602)
Q Consensus 213 ------e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~ 286 (602)
+.+|+|||||+||||+++++.++++.++|.|.+||+|+++.....+|++||+|||| .++|..+
T Consensus 559 F~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQD-----------tvLFNdT 627 (790)
T KOG0056|consen 559 FTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQD-----------TVLFNDT 627 (790)
T ss_pred EEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCc-----------ceeecce
Confidence 56999999999999999999999999999999999999999999999999999998 6666222
Q ss_pred cccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhh
Q psy3001 287 VPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLR 366 (602)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~ 366 (602)
+..++.+.-... -|+++.+ ....+.+++.+...+++.+ ..+++.|..+| |||||||||||++++
T Consensus 628 I~yNIryak~~A---sneevya---AAkAA~IHdrIl~fPegY~--------t~VGERGLkLS--GGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 628 ILYNIRYAKPSA---SNEEVYA---AAKAAQIHDRILQFPEGYN--------TRVGERGLKLS--GGEKQRVAIARTILK 691 (790)
T ss_pred eeeheeecCCCC---ChHHHHH---HHHHhhHHHHHhcCchhhh--------hhhhhcccccC--CcchhhHHHHHHHhc
Confidence 222111111100 0011100 0011222222222232222 34788888888 599999999999999
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHH
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
+|.|++|||+||+||..+++.|+..|.+...++|-|+|+||++++-+||.|+++++|+|+|.|.|+|++...++.|..++
T Consensus 692 ~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MW 771 (790)
T KOG0056|consen 692 APSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMW 771 (790)
T ss_pred CCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999988
Q ss_pred Hh
Q psy3001 447 KD 448 (602)
Q Consensus 447 ~~ 448 (602)
+.
T Consensus 772 q~ 773 (790)
T KOG0056|consen 772 QA 773 (790)
T ss_pred HH
Confidence 53
No 25
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.7e-50 Score=456.57 Aligned_cols=407 Identities=23% Similarity=0.324 Sum_probs=269.2
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVL-YLMP--VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~ 80 (602)
..+.++..++|.++|+|++++|+.||+++++|++++|++ |+..+.+++.......+..+...+ .+++ +..+.+.+.
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 457788999999999999999999999999999999998 899998877554444333322222 1111 111111111
Q ss_pred --HHHHHHHH--HHHH----HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh-------------
Q psy3001 81 --FVISLGTL--FAAK----RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT------------- 128 (602)
Q Consensus 81 --~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~------------- 128 (602)
+.+++..+ .... +...+..+...+ ....+.|...| +.+ +++.+....
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAV-LNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 1111 111111222111 11223333333 111 222110000
Q ss_pred ----hhhHH-------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .+++|.+ ..+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 00000 1123332 223445667888888999999999999999999998766543
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
.... .....+..+.++|+||+|+|+++ ++.+||+|+||||||||+++|+|+|+|++|+|.+||+|
T Consensus 460 ~~~~--~~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~ 537 (708)
T TIGR01193 460 NKKK--RTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS 537 (708)
T ss_pred cccc--ccCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEE
Confidence 2111 01112234578888888888532 37899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-H
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-Q 328 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 328 (602)
+++++...+|+.++||||+ |++| .+++..|-.... ......++....... .
T Consensus 538 i~~~~~~~lr~~i~~v~Q~-----------~~lf-------------~gTI~eNi~l~~----~~~~~~~~i~~a~~~a~ 589 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQE-----------PYIF-------------SGSILENLLLGA----KENVSQDEIWAACEIAE 589 (708)
T ss_pred HHHcCHHHHHHheEEEecC-----------ceeh-------------hHHHHHHHhccC----CCCCCHHHHHHHHHHhC
Confidence 9999999999999999998 5565 444433321110 000111111111110 1
Q ss_pred H-HHHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEee
Q psy3001 329 L-KRLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405 (602)
Q Consensus 329 ~-~~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 405 (602)
+ +.+. ..+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++. +++|+|+||
T Consensus 590 l~~~i~~lp~gldt~i~e~G~~LS--gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~Iiit 666 (708)
T TIGR01193 590 IKDDIENMPLGYQTELSEEGSSIS--GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVA 666 (708)
T ss_pred CHHHHHhcccccCcEecCCCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 1 1111 1233445677788888 59999999999999999999999999999999999999999875 579999999
Q ss_pred ecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHH
Q psy3001 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 406 H~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
||++.+..||+|++|++|++++.|+|+++++. .+.|..++
T Consensus 667 Hr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~-~~~y~~l~ 706 (708)
T TIGR01193 667 HRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLI 706 (708)
T ss_pred cchHHHHcCCEEEEEECCEEEEECCHHHHHhc-CCcHHHHh
Confidence 99999988999999999999999999999876 45565543
No 26
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=5.9e-50 Score=453.36 Aligned_cols=403 Identities=26% Similarity=0.309 Sum_probs=267.5
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCL-FSVLYLMP--VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~ 80 (602)
..+.++..++|.++|+|++++|+.||+++++|++++|++ |++.+++.+...+...+..+ +.++.+++ +..+.+.+.
T Consensus 202 ~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 280 (686)
T TIGR03797 202 RLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALV 280 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999997 79999887755444433332 22222111 111111111
Q ss_pred H--HHHHHHH--HHHH----HHHHHHHHHhhcccchhhhhcchh----H-------HHHHHHHHHhh-------------
Q psy3001 81 F--VISLGTL--FAAK----RLHEKLLKSMLRWSPLFFDTTPVG----R-------VLSRFSSDVNT------------- 128 (602)
Q Consensus 81 ~--~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~g----~-------~~~r~~~~~~~------------- 128 (602)
. ++++..+ .... +...+..+...+ ....+.|...| + ..++|.+....
T Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (686)
T TIGR03797 281 AVALALVAIAVTLVLGLLQVRKERRLLELSGK-ISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111 1111 111122222222 12233344433 1 11222221000
Q ss_pred ----hhhHH-------------------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQTL---SQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .+++|.++ .+...+..|+..+...+..++....+++|+.++++.+++.+
T Consensus 360 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 439 (686)
T TIGR03797 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 00000 01233222 23445667788888999999999999999999998765532
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
... .. ..+..+.++|+||+|+|+++ ++.+||+|+||||||||+|+|+|+|+|++|+|.+||+
T Consensus 440 ~~~--~~--~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 515 (686)
T TIGR03797 440 EAK--TD--PGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQ 515 (686)
T ss_pred cCc--CC--CCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 111 00 11123567888888888431 2789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR- 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (602)
|++++++..+|+++++|||+ +.+| .+++..| +........++.......
T Consensus 516 ~i~~~~~~~lr~~i~~v~Q~-----------~~lf-------------~gTI~eN------i~~~~~~~~e~i~~al~~a 565 (686)
T TIGR03797 516 DLAGLDVQAVRRQLGVVLQN-----------GRLM-------------SGSIFEN------IAGGAPLTLDEAWEAARMA 565 (686)
T ss_pred EcCcCCHHHHHhccEEEccC-----------CccC-------------cccHHHH------HhcCCCCCHHHHHHHHHHc
Confidence 99999999999999999998 5555 3433332 111110111111111111
Q ss_pred HHH-HHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 QLK-RLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 ~~~-~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
.++ .+. ..+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++. ++|+|+|
T Consensus 566 ~l~~~i~~lp~G~dt~ige~G~~LS--GGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiI 641 (686)
T TIGR03797 566 GLAEDIRAMPMGMHTVISEGGGTLS--GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVI 641 (686)
T ss_pred CcHHHHHhccccccccccCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEE
Confidence 111 111 1233445677788888 59999999999999999999999999999999999999999876 5799999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|||++.+..||+|++|++|++++.|+|+++++. ++.|+.++.
T Consensus 642 tHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~ 683 (686)
T TIGR03797 642 AHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLAR 683 (686)
T ss_pred ecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 999999999999999999999999999999876 566665543
No 27
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=3.4e-50 Score=457.41 Aligned_cols=406 Identities=22% Similarity=0.268 Sum_probs=268.6
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 80 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++| ..+.+++...+..++..++.++..++ ++.+.+.+.
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999987 67888776555444444433332221 111111111
Q ss_pred HH--HHHHHH--HHHHHHHH----HHHHHhhcccchhhhhcchh-----------HHHHHHHHHHhh-------------
Q psy3001 81 FV--ISLGTL--FAAKRLHE----KLLKSMLRWSPLFFDTTPVG-----------RVLSRFSSDVNT------------- 128 (602)
Q Consensus 81 ~~--~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~g-----------~~~~r~~~~~~~------------- 128 (602)
.+ +++..+ ....+... +..+...+ ....+.+...| ...+++.+....
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGK-LTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQ 377 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111111 11111111 11111111 11123333333 111222210000
Q ss_pred ----hhhHH-------------------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQTL---SQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .+++|.++ .+...+..|+..+...+..+++...+++|+.++++.+++.+
T Consensus 378 ~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 457 (710)
T TIGR03796 378 ILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPL 457 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 00000 01233322 23445667788888999999999999999999998766543
Q ss_pred cccC---CCCCCC-CCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEE
Q psy3001 183 WVND---KKPKDE-WPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244 (602)
Q Consensus 183 ~~~~---~~~~~~-~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~ 244 (602)
.... ...... .+..+.++|+||+|+|++. ++.+||||+||||||||+|+|+|+|+|++|+|.
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 458 LEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred cccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 2110 000001 1224578899999988642 378999999999999999999999999999999
Q ss_pred ECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHH
Q psy3001 245 IDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVA 324 (602)
Q Consensus 245 i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (602)
+||.|+.+++...+|+.++||||+ +++| .++++.|-... ......++....
T Consensus 538 idg~~i~~~~~~~lr~~i~~v~Q~-----------~~lf-------------~gTi~eNi~l~-----~~~~~~~~i~~a 588 (710)
T TIGR03796 538 FDGIPREEIPREVLANSVAMVDQD-----------IFLF-------------EGTVRDNLTLW-----DPTIPDADLVRA 588 (710)
T ss_pred ECCEeHHHCCHHHHHhheeEEecC-----------Chhh-------------hccHHHHhhCC-----CCCCCHHHHHHH
Confidence 999999999999999999999998 5555 33433321110 000111111111
Q ss_pred HHH-HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccE
Q psy3001 325 TSR-QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCT 400 (602)
Q Consensus 325 ~~~-~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 400 (602)
... .+ +.+.. .+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++ .++|
T Consensus 589 l~~~~l~~~i~~lp~gl~t~i~e~G~~LS--GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T 664 (710)
T TIGR03796 589 CKDAAIHDVITSRPGGYDAELAEGGANLS--GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCT 664 (710)
T ss_pred HHHhCCHHHHHhCcCcccceeccCCCCCC--HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCE
Confidence 111 11 11111 233455777888888 5999999999999999999999999999999999999999986 4799
Q ss_pred EEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHH
Q psy3001 401 VLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445 (602)
Q Consensus 401 vi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 445 (602)
+|+||||++.+..||+|++|++|++++.|+|+++++. ++.|+.+
T Consensus 665 ~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l 708 (710)
T TIGR03796 665 CIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARL 708 (710)
T ss_pred EEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHH
Confidence 9999999999999999999999999999999999876 4555543
No 28
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.2e-50 Score=479.47 Aligned_cols=410 Identities=22% Similarity=0.307 Sum_probs=271.6
Q ss_pred cchhhHHHHHHHHHHHHHHHcCccccccc--ccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDT--TPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVF 77 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~--~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 77 (602)
...+.++..++|.++|++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++.++ ++.+.+
T Consensus 891 ~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l 970 (1466)
T PTZ00265 891 NVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIV 970 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999986 8899999999999999999877666666665554443322 122211
Q ss_pred HHH--HHHHHHHHHHHHHHHHH---HHH-H-----------------hhcccchhhhhcchh----HHH-------HHHH
Q psy3001 78 FYG--FVISLGTLFAAKRLHEK---LLK-S-----------------MLRWSPLFFDTTPVG----RVL-------SRFS 123 (602)
Q Consensus 78 ~~~--~~~~~~~~~~~~~~~~~---~~~-~-----------------~~~~~~~~~~~~~~g----~~~-------~r~~ 123 (602)
.+. ++++++......+.+.. ..+ . ..+ ....+.|...| +.+ ++|.
T Consensus 971 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E~l~gi~tVka~~~e~~~~~~~~ 1049 (1466)
T PTZ00265 971 AAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKD-PSFLIQEAFYNMNTVIIYGLEDYFCNLIE 1049 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHH-HHHHHHHHHhcHHHHHHhcchHHHHHHHH
Confidence 111 11111111111111110 000 0 000 11234444444 111 2222
Q ss_pred HHHhh-----------------hhhHH-------------------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy3001 124 SDVNT-----------------LDNKL-------------------TLSVQQTLSQP---FKITQTLNWLVRMTSDVETN 164 (602)
Q Consensus 124 ~~~~~-----------------~~~~~-------------------~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~ 164 (602)
+.... +...+ .++++.++... .....++..+...+..++.+
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a 1129 (1466)
T PTZ00265 1050 KAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENA 1129 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21100 00000 01122222111 11113455667788889999
Q ss_pred HHHHHHHHHHhcCCcccccccCCCCCC--CCCCCCcEEEeeeEEEEec--C-------------CceEEEEeccCCChhH
Q psy3001 165 IVAVERIKEYGETPQEAEWVNDKKPKD--EWPEKGEVEFKDYKVRYRE--G-------------LELVGIVGRTGAGKSS 227 (602)
Q Consensus 165 ~~~~~ri~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~vs~~~~~--~-------------~e~~~lvG~sGsGKST 227 (602)
..+.+|+.++++.+++.+......... .....+.++|+||+|+|+. + ++++||||+|||||||
T Consensus 1130 ~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKST 1209 (1466)
T PTZ00265 1130 KLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKST 1209 (1466)
T ss_pred HHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHH
Confidence 999999999998755322111110000 1112467999999999952 1 2679999999999999
Q ss_pred HHHHHhcccCC------------------------------------------------------CCceEEECCeecCCC
Q psy3001 228 LTLALFRIIEP------------------------------------------------------ADGTIIIDGVDIRTL 253 (602)
Q Consensus 228 L~~ll~g~~~~------------------------------------------------------~~G~I~i~g~~~~~~ 253 (602)
|+++|.|+|+| ++|+|.+||+|++++
T Consensus 1210 l~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~ 1289 (1466)
T PTZ00265 1210 VMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDY 1289 (1466)
T ss_pred HHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhC
Confidence 99999999998 699999999999999
Q ss_pred ChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccc-c------cccccccchhHHHHHHHH
Q psy3001 254 GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVK-P------LIITPFCSNLQRFYVATS 326 (602)
Q Consensus 254 ~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~ 326 (602)
+...+|++|+||+|+ |.+| .++++.|-... . .......+++++++...+
T Consensus 1290 ~~~~lR~~i~~V~Qe-----------p~LF-------------~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP 1345 (1466)
T PTZ00265 1290 NLKDLRNLFSIVSQE-----------PMLF-------------NMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLP 1345 (1466)
T ss_pred CHHHHHhhccEeCCC-----------Cccc-------------cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCc
Confidence 999999999999998 6666 44433331110 0 000001111222222222
Q ss_pred HHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEe
Q psy3001 327 RQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTI 404 (602)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~i 404 (602)
. +.+..+++.|.+|| |||||||||||||+++|+|||||||||+||+++++.+++.|++.. +++|+|+|
T Consensus 1346 ~--------GydT~VGe~G~~LS--GGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiI 1415 (1466)
T PTZ00265 1346 N--------KYDTNVGPYGKSLS--GGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITI 1415 (1466)
T ss_pred c--------ccCCccCCCCCcCC--HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 2 23445778888888 599999999999999999999999999999999999999999874 58999999
Q ss_pred eecccccccCCeEEEEeC----ceEE-eecChhHHhhcchhHHHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDK----GLVV-EFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~----G~i~-~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|||++++..||+|+||++ |+++ +.|+|+++++..++.|+.+++
T Consensus 1416 aHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~ 1463 (1466)
T PTZ00265 1416 AHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVK 1463 (1466)
T ss_pred echHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHh
Confidence 999999999999999999 8955 899999999754677777664
No 29
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-51 Score=450.40 Aligned_cols=354 Identities=20% Similarity=0.252 Sum_probs=246.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+|+|+|+++|++|+|.++|.++...+.... ++.++|++|++..
T Consensus 18 ~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~----- 91 (510)
T PRK09700 18 VHALKSVNLTVYPG-EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSV----- 91 (510)
T ss_pred eEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccc-----
Confidence 35799999999998 9999999999999999999999999999999999999987776543 4679999997421
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc-----cchhH--HHHHHHHHHHHHHhhcccCCcccccCCcCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-----CSNLQ--RFYVATSRQLKRLESVSRSPIYSHFGETVT 349 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls 349 (602)
+. ..+ +.+++.... ..... .......+..+.++.++..........++|
T Consensus 92 ------~~------------~~t------v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 147 (510)
T PRK09700 92 ------ID------------ELT------VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLS 147 (510)
T ss_pred ------cC------------CCc------HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCC
Confidence 10 000 000000000 00000 000011122233334444444455556777
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
||||||++|||||+.+|++|||||||++||+.+..++.+.|+++. +++|||++||+++.+.. ||++++|++|+++.
T Consensus 148 --gG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~ 225 (510)
T PRK09700 148 --ISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVC 225 (510)
T ss_pred --HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEee
Confidence 699999999999999999999999999999999999999998864 47899999999999987 99999999999999
Q ss_pred ecChhHHhhcchhHHHHHHHhhhh-hHH--HHH-HHhhhh-hHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCC
Q psy3001 428 FDSPSVLMKNKASIFYSMAKDAGL-AWL--AVR-LETVGN-LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTG 502 (602)
Q Consensus 428 ~g~~~~l~~~~~~~~~~~~~~~~~-~~~--~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nG 502 (602)
.|+++++... ............ ... ... ...... .+.+.+....+ . ..++++||++++||++||+|+||
T Consensus 226 ~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~--~~l~~isl~i~~Ge~~~l~G~NG 299 (510)
T PRK09700 226 SGMVSDVSND--DIVRLMVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRD--R--KKVRDISFSVCRGEILGFAGLVG 299 (510)
T ss_pred ecchhhCCHH--HHHHHhcCCCccccccccccccccCCCCcEEEEeCccccC--C--CcccceeEEEcCCcEEEEECCCC
Confidence 8888776432 111111000000 000 000 000000 01111111111 1 13567999999999999999999
Q ss_pred CChHHHHHHHHhccCCCCceEEECCeecCCCCh-hhhhccceEecCCc---ccccc-chhcccCCCCC------------
Q psy3001 503 AGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDP---VLFSG-TLRLNLDPVGE------------ 565 (602)
Q Consensus 503 sGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp---~lf~~-Tv~~nl~~~~~------------ 565 (602)
||||||+++|+|+++|++|+|.++|+++...+. ..++++++||||++ .+|.. ||++|+.....
T Consensus 300 sGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 379 (510)
T PRK09700 300 SGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGL 379 (510)
T ss_pred CCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccc
Confidence 999999999999999999999999998865543 35677899999985 46654 99999853210
Q ss_pred --C--cHHHHHHHHHHcCCC-cccccccc
Q psy3001 566 --S--SDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 566 --~--~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
. ..+++.++++.+++. +..++.|.
T Consensus 380 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 408 (510)
T PRK09700 380 FHEVDEQRTAENQRELLALKCHSVNQNIT 408 (510)
T ss_pred cChHHHHHHHHHHHHhcCCCCCCccCccc
Confidence 0 123478899999996 55555544
No 30
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.5e-51 Score=449.62 Aligned_cols=350 Identities=19% Similarity=0.249 Sum_probs=243.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH-Hhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+|+|+|+++|++|+|.++|.++...+... .++.++|++|++....
T Consensus 17 ~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~--- 92 (501)
T PRK10762 17 VKALSGAALNVYPG-RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIP--- 92 (501)
T ss_pred eEEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccC---
Confidence 45799999999998 999999999999999999999999999999999999987655444 3568999999742110
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc-----cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-----CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
. .++.+++.... ..... ......+..+.++.++...........+|
T Consensus 93 --------------------~------~tv~e~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS-- 143 (501)
T PRK10762 93 --------------------Q------LTIAENIFLGREFVNRFGRID-WKKMYAEADKLLARLNLRFSSDKLVGELS-- 143 (501)
T ss_pred --------------------C------CcHHHHhhhccccccccCccC-HHHHHHHHHHHHHHcCCCCCccCchhhCC--
Confidence 0 00111000000 00000 00011122233334444444445556777
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
||||||++|||||+.+|++|||||||++||+.+..++.+.++++. .+.|||++||+++.+.. ||++++|++|+++..+
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 699999999999999999999999999999999999999998864 46899999999999987 9999999999999988
Q ss_pred ChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhh-hHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHH
Q psy3001 430 SPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGN-LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSL 508 (602)
Q Consensus 430 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTL 508 (602)
+.+++... ...............+....+... .+.+.... . ..++++||++++||++||+|+||||||||
T Consensus 224 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~--~~l~~vsl~i~~Ge~~~liG~NGsGKSTL 294 (501)
T PRK10762 224 EVADLTED--SLIEMMVGRKLEDQYPRLDKAPGEVRLKVDNLS-----G--PGVNDVSFTLRKGEILGVSGLMGAGRTEL 294 (501)
T ss_pred CcCcCCHH--HHHHHhcCCCccccccccccCCCCcEEEEeCcc-----c--CCcccceEEEcCCcEEEEecCCCCCHHHH
Confidence 87665321 100000000000000000000000 01111100 0 12467999999999999999999999999
Q ss_pred HHHHHhccCCCCceEEECCeecCCCCh-hhhhccceEecCCc---cccc-cchhcccCCCC-----C----C----cHHH
Q psy3001 509 TLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDP---VLFS-GTLRLNLDPVG-----E----S----SDEA 570 (602)
Q Consensus 509 l~~L~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp---~lf~-~Tv~~nl~~~~-----~----~----~~~~ 570 (602)
+++|+|+++|++|+|.++|+++...+. +.+|++++||||+| .+|. .||++|+.... . . .+++
T Consensus 295 l~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 374 (501)
T PRK10762 295 MKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQA 374 (501)
T ss_pred HHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHH
Confidence 999999999999999999999876654 34567899999997 3554 59999985310 0 1 1345
Q ss_pred HHHHHHHcCCC-cccccccc
Q psy3001 571 IWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 571 i~~al~~~~l~-~~~~~~~~ 589 (602)
+.++++.+++. +..++.+.
T Consensus 375 ~~~~l~~~~l~~~~~~~~~~ 394 (501)
T PRK10762 375 VSDFIRLFNIKTPSMEQAIG 394 (501)
T ss_pred HHHHHHhcCCCCCCccCchh
Confidence 88899999994 45554444
No 31
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=1.8e-49 Score=449.93 Aligned_cols=398 Identities=22% Similarity=0.302 Sum_probs=265.2
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSV-LYLMP--VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~ 80 (602)
..+.++..++|..+|+|++++|++| +++++|++++|+ +|++.+++++...+...+..++.+ +.+++ ++.+.+.+.
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4577889999999999999999998 788999999999 799999988765443333322222 21111 111111111
Q ss_pred H--HHHHHH---HHHHH---HHHHHHHHHhhcccchhhhhcchh----HH-------HHHHHHHHhh-------------
Q psy3001 81 F--VISLGT---LFAAK---RLHEKLLKSMLRWSPLFFDTTPVG----RV-------LSRFSSDVNT------------- 128 (602)
Q Consensus 81 ~--~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~-------~~r~~~~~~~------------- 128 (602)
. .+++.. ....+ +...+..+...+ ....+.|...| +. .+++.+....
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQ-RNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSN 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111 11111 111122222222 12234444444 11 1222221100
Q ss_pred ----hhhHH-------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .+++|.+ +.+...+..|+..+...+..+++...+.+|+.++++.+++.+
T Consensus 370 ~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 449 (694)
T TIGR03375 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 00000 0123322 233445667888888999999999999999999998766532
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
.... .....+..+.++|+||+|+|+++ ++.+||+|+||||||||+|+|+|+|+|++|+|.+||+
T Consensus 450 ~~~~--~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 450 EGTR--FLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred CCCC--CCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1111 00011123568888998888531 3789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR- 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (602)
|+++++...+|+.+++|||+ +++| .+++..|-.... .....++.......
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~-----------~~lf-------------~~TI~eNi~~~~-----~~~~~~~i~~a~~~~ 578 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQD-----------PRLF-------------YGTLRDNIALGA-----PYADDEEILRAAELA 578 (694)
T ss_pred EhhhCCHHHHHhccEEECCC-----------hhhh-------------hhhHHHHHhCCC-----CCCCHHHHHHHHHHc
Confidence 99999999999999999998 5555 334333321100 00111111111110
Q ss_pred -HHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 -QLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 -~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
..+.+.. .+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+|
T Consensus 579 ~l~~~i~~lp~gl~T~i~e~G~~LS--gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiI 656 (694)
T TIGR03375 579 GVTEFVRRHPDGLDMQIGERGRSLS--GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLV 656 (694)
T ss_pred ChHHHHHhCcccccceecCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1111111 233445677888888 59999999999999999999999999999999999999999988888999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhc
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
|||++.+..||+|++|++|++++.|+|+++++.
T Consensus 657 tHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 657 THRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred ecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999988999999999999999999998764
No 32
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=7e-49 Score=437.62 Aligned_cols=407 Identities=24% Similarity=0.314 Sum_probs=272.6
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYGF 81 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 81 (602)
.+.++...+|..+|+++++.|.++|+++++|++++|+++|++.+...+...+..++..++.++..++ ++.+.+.+..
T Consensus 92 ~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 171 (582)
T PRK11176 92 VSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLIL 171 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888999999999999999999999999999999999999998776666555554444433222 1111111111
Q ss_pred --HHHHHHHH--HHHHH----HHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh--------------
Q psy3001 82 --VISLGTLF--AAKRL----HEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT-------------- 128 (602)
Q Consensus 82 --~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~-------------- 128 (602)
.+++..+. ...+. ..+..+...+ ....+.+...| +.+ +++....+.
T Consensus 172 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T PRK11176 172 IVIAPIVSIAIRVVSKRFRNISKNMQNTMGQ-VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSI 250 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 11111 1111111111 11123333333 111 222221000
Q ss_pred ---hhhHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 129 ---LDNKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 129 ---~~~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
+...+ .++++. ++.+...+..|+..+...+..++....+.+|+.++.+.+++.+.
T Consensus 251 ~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 330 (582)
T PRK11176 251 SDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE 330 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 00000 012222 23344456678888889999999999999999999876544221
Q ss_pred ccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 184 VNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
.... ..+..+.++|+||+|+|+++ ++++||+|+||||||||+++|+|+++|++|+|.+||++
T Consensus 331 ~~~~----~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 406 (582)
T PRK11176 331 GKRV----IERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD 406 (582)
T ss_pred CCcC----CCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEE
Confidence 1000 11223468888888888542 27899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-H
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-Q 328 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 328 (602)
+.+++...+++.++|+||+ +.+| .+++..|-.... +.....++....... .
T Consensus 407 i~~~~~~~~~~~i~~v~Q~-----------~~lf-------------~~Ti~~Ni~~~~----~~~~~~~~i~~al~~~~ 458 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQN-----------VHLF-------------NDTIANNIAYAR----TEQYSREQIEEAARMAY 458 (582)
T ss_pred hhhcCHHHHHhhceEEccC-----------ceee-------------cchHHHHHhcCC----CCCCCHHHHHHHHHHhC
Confidence 9999999999999999998 5555 333332211100 000011111111111 1
Q ss_pred HH-HHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEee
Q psy3001 329 LK-RLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405 (602)
Q Consensus 329 ~~-~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 405 (602)
++ .++ ..+.+..+++.|.++| ||||||++|||||+++|++||||||||+||++++..+.+.+++..+++|+|+||
T Consensus 459 l~~~i~~lp~Gldt~ig~~g~~LS--GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~Vt 536 (582)
T PRK11176 459 AMDFINKMDNGLDTVIGENGVLLS--GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIA 536 (582)
T ss_pred cHHHHHhcccccCceeCCCCCcCC--HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 11 111 1233445677788888 599999999999999999999999999999999999999999887789999999
Q ss_pred ecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 406 H~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
||++.+..||+|++|++|++++.|+++++++. ++.|+.++.
T Consensus 537 Hr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~ 577 (582)
T PRK11176 537 HRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHK 577 (582)
T ss_pred cchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHH
Confidence 99999989999999999999999999999876 455665543
No 33
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=6e-49 Score=438.46 Aligned_cols=404 Identities=25% Similarity=0.347 Sum_probs=269.3
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHH--H
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFF--Y 79 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~ 79 (602)
.+.++..++|.++|++++++|.++|+++++|++++|+++|++.++..+...+..++..+..++..+. ++.+.+. .
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~ 171 (592)
T PRK10790 92 AAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVA 171 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999999999999999999999999999999999877666655555444333222 1111111 1
Q ss_pred HHHHHHHHH--HHHHHHHHH----HHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hhh-
Q psy3001 80 GFVISLGTL--FAAKRLHEK----LLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LDN- 131 (602)
Q Consensus 80 ~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~~- 131 (602)
.+.+++..+ ........+ ..+...+ ....+.+...| +.+ +++.+..+. ...
T Consensus 172 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (592)
T PRK10790 172 IMIFPAVLVVMVIYQRYSTPIVRRVRAYLAD-INDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGF 250 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 111111111 1111111 11123333333 111 111110000 000
Q ss_pred -------HHH------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 132 -------KLT------------------LSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 132 -------~~~------------------~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
.+. ++++.+ +.+...+..|+..+...+..+++...+.+|+.++++.++++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 330 (592)
T PRK10790 251 LLRPLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG 330 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 000 011111 2223345667788888899999999999999999876543211
Q ss_pred ccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 184 VNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
. .. .....+.++|+|++|+|+++ ++.+||+|+||||||||+++|+|+++|++|+|.+||.++
T Consensus 331 ~-~~----~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i 405 (592)
T PRK10790 331 N-DD----RPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL 405 (592)
T ss_pred C-Cc----cCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEh
Confidence 1 10 11123467888888887531 278999999999999999999999999999999999999
Q ss_pred CCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH-HHH
Q psy3001 251 RTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS-RQL 329 (602)
Q Consensus 251 ~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 329 (602)
.++++..+|++|+|+||+ |.+| .+++..|-.. .......+...... ..+
T Consensus 406 ~~~~~~~l~~~i~~v~Q~-----------~~lF-------------~~Ti~~NI~~------~~~~~d~~i~~a~~~~gl 455 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQD-----------PVVL-------------ADTFLANVTL------GRDISEEQVWQALETVQL 455 (592)
T ss_pred hhCCHHHHHhheEEEccC-----------Cccc-------------cchHHHHHHh------CCCCCHHHHHHHHHHcCc
Confidence 999999999999999998 5555 4443333211 11001111111100 011
Q ss_pred -HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeee
Q psy3001 330 -KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH 406 (602)
Q Consensus 330 -~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 406 (602)
+.+.. .+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+|||
T Consensus 456 ~~~i~~lp~Gldt~i~e~g~~LS--GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtH 533 (592)
T PRK10790 456 AELARSLPDGLYTPLGEQGNNLS--VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAH 533 (592)
T ss_pred HHHHHhccccccccccCCCCCCC--HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 11111 133445677788888 5999999999999999999999999999999999999999998877899999999
Q ss_pred cccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 407 RLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 407 ~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|++.+..||+|++|++|++++.|+|+++++. ++.|+.+..
T Consensus 534 r~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~ 573 (592)
T PRK10790 534 RLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQ 573 (592)
T ss_pred chHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHH
Confidence 9999999999999999999999999999877 466666654
No 34
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-51 Score=447.00 Aligned_cols=355 Identities=22% Similarity=0.300 Sum_probs=245.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC--CCceEEECCeecCCCChHH-Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~--~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+|+|+|+++| ++|+|.++|.++...+... .++.++|++|++..
T Consensus 18 ~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~--- 93 (506)
T PRK13549 18 VKALDNVSLKVRAG-EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELAL--- 93 (506)
T ss_pred eEeecceeEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEecccc---
Confidence 45799999999998 99999999999999999999999996 8999999999998766554 45789999997421
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc------cchhHHHHHHHHHHHHHHhhcccCCcccccCCcC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF------CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETV 348 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 348 (602)
+. . .++.+++.... ........ .+..+.++.++...........+
T Consensus 94 --------~~------------~------~tv~e~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~L 144 (506)
T PRK13549 94 --------VK------------E------LSVLENIFLGNEITPGGIMDYDAMY---LRAQKLLAQLKLDINPATPVGNL 144 (506)
T ss_pred --------CC------------C------CcHHHHhhhcccccccCCcCHHHHH---HHHHHHHHHcCCCCCcccchhhC
Confidence 10 0 00111100000 00001111 12223333444444445555677
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
| ||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|||++||+++.+.. ||++++|++|+++
T Consensus 145 S--gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~ 222 (506)
T PRK13549 145 G--LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222 (506)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe
Confidence 7 699999999999999999999999999999999999999998864 47899999999999987 9999999999999
Q ss_pred eecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhh-hHHHHHHHHHHHh-cccccccceeeEEecceeEEEECCCCCC
Q psy3001 427 EFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGN-LITFSAALLAVLS-KETLNAGLVGLSVSYAMQVGIVGRTGAG 504 (602)
Q Consensus 427 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~i~~Ge~v~ivG~nGsG 504 (602)
..++++++... ...............+........ .+.+......+.. .....+.++||++++||++||+|+||||
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsG 300 (506)
T PRK13549 223 GTRPAAGMTED--DIITMMVGRELTALYPREPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAG 300 (506)
T ss_pred eecccccCCHH--HHHHHhhCcCccccccccccCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCC
Confidence 99887765322 111111000000000000000001 1122222222210 1122456799999999999999999999
Q ss_pred hHHHHHHHHhccC-CCCceEEECCeecCCCCh-hhhhccceEecCCc---cccc-cchhcccCCC-----CC----C---
Q psy3001 505 KSSLTLALFRIIE-PADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDP---VLFS-GTLRLNLDPV-----GE----S--- 566 (602)
Q Consensus 505 KSTLl~~L~g~~~-~~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp---~lf~-~Tv~~nl~~~-----~~----~--- 566 (602)
||||+++|+|+++ |++|+|.++|+++...+. ...+++++||||+| .+|. .||.+|+... .. .
T Consensus 301 KSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 380 (506)
T PRK13549 301 RTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA 380 (506)
T ss_pred HHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH
Confidence 9999999999998 599999999998865443 34567899999997 3554 4999998531 00 1
Q ss_pred cHHHHHHHHHHcCCC-cccccccc
Q psy3001 567 SDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 567 ~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
..+++.++++.+++. +..++.+.
T Consensus 381 ~~~~~~~~l~~~~l~~~~~~~~~~ 404 (506)
T PRK13549 381 ELKTILESIQRLKVKTASPELAIA 404 (506)
T ss_pred HHHHHHHHHHhcCccCCCcccccc
Confidence 124588899999995 45454443
No 35
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.1e-51 Score=451.23 Aligned_cols=359 Identities=23% Similarity=0.371 Sum_probs=246.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCCChHH---Hh-hccceeccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTLGLHT---LR-SRLTIIPQV 268 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~~~~~---~~-~~i~~v~Q~ 268 (602)
...++|+||++.+| |++||+|+||||||||+++|+|+++| ++|+|.++|.++...+... ++ +.++|++|+
T Consensus 22 ~~~l~~isl~i~~G-e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~ 100 (529)
T PRK15134 22 RTVVNDVSLQIEAG-ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQE 100 (529)
T ss_pred eeeeeceEEEEeCC-CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecC
Confidence 45899999999998 99999999999999999999999987 7999999999988766543 33 579999998
Q ss_pred chhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHHHHHHHHHhhcccCC---cccc
Q psy3001 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVATSRQLKRLESVSRSP---IYSH 343 (602)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 343 (602)
+...+. +.. .+.+.+... ....... .....+..+.++.++... ....
T Consensus 101 ~~~~~~-----~~~----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~ 152 (529)
T PRK15134 101 PMVSLN-----PLH----------------------TLEKQLYEVLSLHRGMRR-EAARGEILNCLDRVGIRQAAKRLTD 152 (529)
T ss_pred chhhcC-----chh----------------------hHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHCCCCChHHHHhh
Confidence 532110 000 000000000 0000000 001112222333444332 2344
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEE
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVL 420 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l 420 (602)
....|| ||||||++|||||+.+|++|||||||++||+.+..++.+.|+++. .++|||+|||+++.+.. ||||++|
T Consensus 153 ~~~~LS--gGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l 230 (529)
T PRK15134 153 YPHQLS--GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVM 230 (529)
T ss_pred CCcccC--HHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence 566777 699999999999999999999999999999999999999998864 36899999999999987 9999999
Q ss_pred eCceEEeecChhHHhhcchhHHHH-HHHhhhhhHHHHHHHhhh-hhHHHHHHHHHHHh---------cccccccceeeEE
Q psy3001 421 DKGLVVEFDSPSVLMKNKASIFYS-MAKDAGLAWLAVRLETVG-NLITFSAALLAVLS---------KETLNAGLVGLSV 489 (602)
Q Consensus 421 ~~G~i~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~l~i 489 (602)
++|++++.|++++++......+.. ......... ........ ..+.+......+.. .....++++||++
T Consensus 231 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i 309 (529)
T PRK15134 231 QNGRCVEQNRAATLFSAPTHPYTQKLLNSEPSGD-PVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTL 309 (529)
T ss_pred ECCEEEEeCCHHHHhhCCCCHHHHHHHHhCcccc-ccccCCCCCCcccccCcEEEeecCccccccccccceeeecceeEE
Confidence 999999999988876543221111 111000000 00000000 11222222222210 0123456899999
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh---hhccceEecCCc--cccc-cchhcccCCC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQDP--VLFS-GTLRLNLDPV 563 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~---lr~~i~~V~Qdp--~lf~-~Tv~~nl~~~ 563 (602)
++||++||+|+||||||||+++|+|+++ ++|+|+++|+++...+... +|++++||||+| .+|. .||++|+...
T Consensus 310 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~ 388 (529)
T PRK15134 310 RPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEG 388 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHH
Confidence 9999999999999999999999999995 8999999999987665433 467899999998 3665 4999998521
Q ss_pred ----C---CC--cHHHHHHHHHHcCCC-cccccccc
Q psy3001 564 ----G---ES--SDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 564 ----~---~~--~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
. .. .++++.++++.+++. +..++.|.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 424 (529)
T PRK15134 389 LRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPA 424 (529)
T ss_pred HHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCc
Confidence 1 11 234588999999996 34454443
No 36
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1e-50 Score=443.25 Aligned_cols=351 Identities=23% Similarity=0.329 Sum_probs=244.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHh-hccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR-SRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~-~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++ +.++|++|++..
T Consensus 24 ~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~----- 97 (510)
T PRK15439 24 VEVLKGIDFTLHAG-EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLL----- 97 (510)
T ss_pred ceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCcc-----
Confidence 35789999999988 99999999999999999999999999999999999998877766554 469999997421
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. ..++.+++..... .... ...+..+.++.++...........+| |||||
T Consensus 98 ------~~------------------~~tv~e~l~~~~~-~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~q 147 (510)
T PRK15439 98 ------FP------------------NLSVKENILFGLP-KRQA---SMQKMKQLLAALGCQLDLDSSAGSLE--VADRQ 147 (510)
T ss_pred ------CC------------------CCcHHHHhhcccc-cchH---HHHHHHHHHHHcCCCccccCChhhCC--HHHHH
Confidence 10 0011111110000 0000 11122233334444444455556777 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+.+|++|||||||++||+.+..++.+.|+++. +++|||++||+++.+.. ||++++|++|+++..|+++++
T Consensus 148 rv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 148 IVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999999999999999999998864 47899999999999987 999999999999999988876
Q ss_pred hhcchhHHHHHHHhhhhhHHHH--H----HHhhhhhHHHHHHHHHHHhcccc---cccceeeEEecceeEEEECCCCCCh
Q psy3001 435 MKNKASIFYSMAKDAGLAWLAV--R----LETVGNLITFSAALLAVLSKETL---NAGLVGLSVSYAMQVGIVGRTGAGK 505 (602)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~Ge~v~ivG~nGsGK 505 (602)
... ................. . .+....... .....+....+ .++++||++++|+++||+|+|||||
T Consensus 228 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGK 302 (510)
T PRK15439 228 STD--DIIQAITPAAREKSLSASQKLWLELPGNRRQQA---AGAPVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGR 302 (510)
T ss_pred CHH--HHHHHHhCccccccccccccccccccccccccC---CCCceEEEeCCCCCCccceeEEEcCCcEEEEECCCCCCH
Confidence 532 11111100000000000 0 000000000 00000111111 2467999999999999999999999
Q ss_pred HHHHHHHHhccCCCCceEEECCeecCCCChhh-hhccceEecCCcc---cccc-chhcccCCC-----C---CC--cHHH
Q psy3001 506 SSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQDPV---LFSG-TLRLNLDPV-----G---ES--SDEA 570 (602)
Q Consensus 506 STLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~i~~V~Qdp~---lf~~-Tv~~nl~~~-----~---~~--~~~~ 570 (602)
|||+++|+|+++|++|+|.++|+++...+... .+++++|+||+|. +|.. |+.+|+... . .. .+++
T Consensus 303 STLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~ 382 (510)
T PRK15439 303 TELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAV 382 (510)
T ss_pred HHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHH
Confidence 99999999999999999999999987766543 4568999999973 5654 888887311 0 11 2245
Q ss_pred HHHHHHHcCCC-cccccccc
Q psy3001 571 IWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 571 i~~al~~~~l~-~~~~~~~~ 589 (602)
+.++++.+++. +..++.+.
T Consensus 383 ~~~~l~~~~l~~~~~~~~~~ 402 (510)
T PRK15439 383 LERYRRALNIKFNHAEQAAR 402 (510)
T ss_pred HHHHHHHcCCCCCCccCccc
Confidence 78899999996 55555443
No 37
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-50 Score=441.97 Aligned_cols=353 Identities=20% Similarity=0.274 Sum_probs=239.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++|++|++..
T Consensus 17 ~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~----- 90 (501)
T PRK11288 17 VKALDDISFDCRAG-QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHL----- 90 (501)
T ss_pred EEEEeeeeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhc-----
Confidence 35799999999998 9999999999999999999999999999999999999865543 3467789999997421
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc---cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF---CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+. .. ++.+++.... ............+..+.++.++...........+| ||
T Consensus 91 ------~~------------~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG 144 (501)
T PRK11288 91 ------VP------------EM------TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLS--IG 144 (501)
T ss_pred ------cC------------CC------CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCC--HH
Confidence 10 00 0101000000 00000000111122233334444443445556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||++|||||+.+|++|||||||++||+.+..++.+.|+++. +++|+|+|||+++.+.. ||++++|++|+++..+..
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999999999998864 47899999999999987 999999999999865543
Q ss_pred hHHhhcchhHHHHHHHhhhhhHHHHHHHhhhh-hHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHHHH
Q psy3001 432 SVLMKNKASIFYSMAKDAGLAWLAVRLETVGN-LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTL 510 (602)
Q Consensus 432 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~ 510 (602)
...... ......................... .+.+.... .. ..++++||++++||++||+|+||||||||++
T Consensus 225 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~-~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk 297 (501)
T PRK11288 225 MAQVDR-DQLVQAMVGREIGDIYGYRPRPLGEVRLRLDGLK-----GP-GLREPISFSVRAGEIVGLFGLVGAGRSELMK 297 (501)
T ss_pred cccCCH-HHHHHHhcCCCccccccccccCCCCcEEEEeccc-----cC-CcccceeEEEeCCcEEEEEcCCCCCHHHHHH
Confidence 211110 0111000000000000000000000 00011100 01 1346799999999999999999999999999
Q ss_pred HHHhccCCCCceEEECCeecCCCCh-hhhhccceEecCCcc---ccc-cchhcccCCCC-----------CC--cHHHHH
Q psy3001 511 ALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDPV---LFS-GTLRLNLDPVG-----------ES--SDEAIW 572 (602)
Q Consensus 511 ~L~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp~---lf~-~Tv~~nl~~~~-----------~~--~~~~i~ 572 (602)
+|+|+++|++|+|.++|+++...++ ..++++++|+||+|. +|. .|+.+|+.... .. ..+++.
T Consensus 298 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (501)
T PRK11288 298 LLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENAD 377 (501)
T ss_pred HHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHH
Confidence 9999999999999999998875443 345678999999983 554 69999975321 01 124588
Q ss_pred HHHHHcCCC-cccccccc
Q psy3001 573 KALELAHLN-TFVSNLPA 589 (602)
Q Consensus 573 ~al~~~~l~-~~~~~~~~ 589 (602)
++++.+++. +..++.|.
T Consensus 378 ~~l~~~~l~~~~~~~~~~ 395 (501)
T PRK11288 378 RFIRSLNIKTPSREQLIM 395 (501)
T ss_pred HHHHhcCcccCCccCccc
Confidence 899999994 55555444
No 38
>KOG0057|consensus
Probab=100.00 E-value=4e-49 Score=403.64 Aligned_cols=408 Identities=24% Similarity=0.334 Sum_probs=263.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---H-HHHHH
Q psy3001 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---V-TITVF 77 (602)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~ 77 (602)
|+...+++-++.-.+.|+|+..+.+++|.++.+|++.+.+..-...|...+...+..++-.++-+.+... + +...+
T Consensus 98 fa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~ 177 (591)
T KOG0057|consen 98 FAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAF 177 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 5677889999999999999999999999999999999999988888888776555555444433322221 1 11112
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHhhcccchhhhhcchhHHHHHHHH-------------HHhh--------
Q psy3001 78 FYGFVISLGTLF--------AAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSS-------------DVNT-------- 128 (602)
Q Consensus 78 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~-------------~~~~-------- 128 (602)
.+..+..++.+. +..++|.++-....+.+...++....=.+.+.|.+ +...
T Consensus 178 ~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~s 257 (591)
T KOG0057|consen 178 ALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSS 257 (591)
T ss_pred HHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhH
Confidence 222222222221 11122222222222211111111111122211111 0000
Q ss_pred --hhhHH-----------------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy3001 129 --LDNKL-----------------------TLSVQ---QTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQE 180 (602)
Q Consensus 129 --~~~~~-----------------------~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 180 (602)
+.++. .++++ .+.+..+++..|+..+...+..+.+++.-++-.....+....
T Consensus 258 l~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~ 337 (591)
T KOG0057|consen 258 LAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDED 337 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh
Confidence 00000 00111 112234455556666667777777777766666544322111
Q ss_pred cccccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 181 AEWVNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
. ...+.......+.|+|+||+|.|.++ +|.+||||+|||||||++|+|.++++ ++|+|++||
T Consensus 338 i----~~~~~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG 412 (591)
T KOG0057|consen 338 I----QEAALPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDG 412 (591)
T ss_pred h----hhccCCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECC
Confidence 1 11111111234679999999999764 27799999999999999999999999 999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATS 326 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 326 (602)
+++++++...+|+.||+|||+ ..+| ++++..| +... .....++.++.+.
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd-----------~~LF-------------ndTIl~N------I~YGn~sas~eeV~e~~k 462 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQD-----------SVLF-------------NDTILYN------IKYGNPSASDEEVVEACK 462 (591)
T ss_pred eeHhhhChHHhhhheeEeCCc-----------cccc-------------chhHHHH------hhcCCCCcCHHHHHHHHH
Confidence 999999999999999999998 4555 2332222 1100 0111111111111
Q ss_pred H-HH-HHHhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEE
Q psy3001 327 R-QL-KRLESV--SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVL 402 (602)
Q Consensus 327 ~-~~-~~l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi 402 (602)
+ .+ +.+..+ +-...+++.|..+| |||||||++|||+++||+|+++|||||+||.+||+.+.+.+.+...++|+|
T Consensus 463 ~a~~hd~i~~l~~GY~T~VGerG~~LS--GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI 540 (591)
T KOG0057|consen 463 RAGLHDVISRLPDGYQTLVGERGLMLS--GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVI 540 (591)
T ss_pred HcCcHHHHHhccccchhhHhhcccccc--cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEE
Confidence 1 01 111111 11234788888899 599999999999999999999999999999999999999999988899999
Q ss_pred EeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
+|.||++++.+||+|+++++|++.++|+|++++. +.+.|...|.
T Consensus 541 ~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~ 584 (591)
T KOG0057|consen 541 MIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWT 584 (591)
T ss_pred EEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhc
Confidence 9999999999999999999999999999999998 5666666554
No 39
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-51 Score=455.16 Aligned_cols=361 Identities=27% Similarity=0.338 Sum_probs=246.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC----------CCChH---HHh-hccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR----------TLGLH---TLR-SRLT 263 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~----------~~~~~---~~~-~~i~ 263 (602)
...++|+||++.+| +++||+|+||||||||+++|+|+++|++|+|.++|.++. ..+.. .++ +.|+
T Consensus 29 ~~~l~~is~~v~~G-e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig 107 (623)
T PRK10261 29 IAAVRNLSFSLQRG-ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMA 107 (623)
T ss_pred eeEEEeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEE
Confidence 35899999999998 999999999999999999999999999999999987542 22222 233 4799
Q ss_pred eecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccC---
Q psy3001 264 IIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRS--- 338 (602)
Q Consensus 264 ~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~--- 338 (602)
+|+|++...+. |. .++.+++.... ...... .....+..+.++.++..
T Consensus 108 ~v~Q~~~~~l~-----~~----------------------~tv~e~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~ 159 (623)
T PRK10261 108 MIFQEPMTSLN-----PV----------------------FTVGEQIAESIRLHQGASR-EEAMVEAKRMLDQVRIPEAQ 159 (623)
T ss_pred EEEeCchhhcC-----CC----------------------CCHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHCCCCChh
Confidence 99998531110 00 01111100000 000000 01112233334444442
Q ss_pred CcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CC
Q psy3001 339 PIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SD 415 (602)
Q Consensus 339 ~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d 415 (602)
........+|| |||||||+|||||+.+|++|||||||++||+.++..+.+.++++. + ++|||+|||+++.+.. ||
T Consensus 160 ~~~~~~~~~LS--gGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~ad 237 (623)
T PRK10261 160 TILSRYPHQLS--GGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIAD 237 (623)
T ss_pred hHHhCCCccCC--HHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 23455667788 699999999999999999999999999999999999999999874 3 7899999999999987 99
Q ss_pred eEEEEeCceEEeecChhHHhhcchhHHHHHHHhh--hh-hH----HHHHHH-----------h--------hhh-hHHHH
Q psy3001 416 RVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA--GL-AW----LAVRLE-----------T--------VGN-LITFS 468 (602)
Q Consensus 416 ~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~--~~-~~----~~~~~~-----------~--------~~~-~~~~~ 468 (602)
||++|++|++++.|++++++..+...|....... .. .+ .....+ + ... .+.+.
T Consensus 238 ri~vl~~G~i~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 317 (623)
T PRK10261 238 RVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQEPPIEQDTVVDGEPILQVR 317 (623)
T ss_pred EEEEeeCCeecccCCHHHhhcCCCChhhhhhhhccCcccccccccCCccccccccccccccCcccccccccCCCceEEEe
Confidence 9999999999999999888754332222111000 00 00 000000 0 000 01111
Q ss_pred HHHHHHHh--c-------ccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---
Q psy3001 469 AALLAVLS--K-------ETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH--- 536 (602)
Q Consensus 469 ~~~~~~~~--~-------~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~--- 536 (602)
.....+.. . ....++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+..
T Consensus 318 ~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 397 (623)
T PRK10261 318 NLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQ 397 (623)
T ss_pred eeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHH
Confidence 11111110 0 01245689999999999999999999999999999999999999999999999776543
Q ss_pred hhhccceEecCCc--cccc-cchhcccCC----CCC----CcHHHHHHHHHHcCCC-cccccccc
Q psy3001 537 TLRSRLTIIPQDP--VLFS-GTLRLNLDP----VGE----SSDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 537 ~lr~~i~~V~Qdp--~lf~-~Tv~~nl~~----~~~----~~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
.+|++|+||||+| .++. .||.+|+.. ... ...+++.++|+.++|. ++.++.|.
T Consensus 398 ~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 462 (623)
T PRK10261 398 ALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPH 462 (623)
T ss_pred HhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 3567899999998 3665 489988742 111 1235688999999995 44444443
No 40
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.8e-51 Score=400.74 Aligned_cols=368 Identities=27% Similarity=0.387 Sum_probs=270.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCCChHHHhh----ccceeccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTLGLHTLRS----RLTIIPQV 268 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~~~~~~~~----~i~~v~Q~ 268 (602)
...++++||.+.+| |.+||||+||||||-..+.++|+++. -+|+|.++|.++-..+...+|. +|++++|+
T Consensus 23 ~~aVk~isf~i~~G-EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 23 VEAVKGISFDIEAG-ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred eEeeccceeeecCC-CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 46799999999998 99999999999999999999999975 4799999999999999888774 89999999
Q ss_pred chhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC---CcccccC
Q psy3001 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS---PIYSHFG 345 (602)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~ 345 (602)
|..-.. |..- ....+.+.+.. .... ...++..+.++.++.++.. .-+..++
T Consensus 102 PMtSLN-----Pl~t------------------Ig~Qi~E~l~~--Hrg~-~~~~Ar~r~lelL~~VgI~~p~~rl~~yP 155 (534)
T COG4172 102 PMTSLN-----PLHT------------------IGKQLAEVLRL--HRGL-SRAAARARALELLELVGIPEPEKRLDAYP 155 (534)
T ss_pred cccccC-----cHhH------------------HHHHHHHHHHH--Hhcc-cHHHHHHHHHHHHHHcCCCchhhhhhhCC
Confidence 653221 1110 00111110000 0000 1123444556666555542 2467789
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
+.+|| ||||||.||.||+.+|++||-||||.+||......|.+.|+++.+ |..+++||||+..+.. ||||+||.+
T Consensus 156 HeLSG--GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~ 233 (534)
T COG4172 156 HELSG--GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH 233 (534)
T ss_pred cccCc--chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEec
Confidence 99995 999999999999999999999999999999999999999998754 7899999999999998 999999999
Q ss_pred ceEEeecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhhh-------H--HH--HHHHHHHHhcccccccceeeEEec
Q psy3001 423 GLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNL-------I--TF--SAALLAVLSKETLNAGLVGLSVSY 491 (602)
Q Consensus 423 G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~--~~~~~~~~~~~~~~~~~~~l~i~~ 491 (602)
|+++|.|+.+.++..+...|....-+....-.+... +.... + .| ....+.........++.+||++++
T Consensus 234 G~ivE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~-~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~ 312 (534)
T COG4172 234 GEIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPL-PEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRR 312 (534)
T ss_pred cEEeecCcHHHHhhCCCChHHHHHHhcCCCCCCCCC-CCCCCceEEecceEEEEecCCccccccchheEEeccceeEecC
Confidence 999999999999999888888765433211000000 00000 0 00 000000000112234579999999
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---hhhccceEecCCccc-ccc--chh----cccC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQDPVL-FSG--TLR----LNLD 561 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~---~lr~~i~~V~Qdp~l-f~~--Tv~----~nl~ 561 (602)
||.+||||.+|||||||-++|+|+++++ |+|.++|+++...+.+ .+|+++.+|+|||+= ++. ||. |-+.
T Consensus 313 gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~ 391 (534)
T COG4172 313 GQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR 391 (534)
T ss_pred CCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh
Confidence 9999999999999999999999999865 9999999999988765 468999999999962 222 443 2332
Q ss_pred CC-----CCCcHHHHHHHHHHcCCCccccccccCCCccccCCC
Q psy3001 562 PV-----GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599 (602)
Q Consensus 562 ~~-----~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G 599 (602)
.. ....++++.+||+.+||+. .--++||++.++|.
T Consensus 392 vh~~~ls~~eR~~rv~~aL~EVGLDp---~~r~RYPhEFSGGQ 431 (534)
T COG4172 392 VHEPKLSAAERDQRVIEALEEVGLDP---ATRNRYPHEFSGGQ 431 (534)
T ss_pred hcCCCCCHHHHHHHHHHHHHHcCCCh---hHhhcCCcccCcch
Confidence 21 2235677999999999987 33468999998764
No 41
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-49 Score=403.02 Aligned_cols=405 Identities=20% Similarity=0.299 Sum_probs=264.3
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHH-----
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITV----- 76 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----- 76 (602)
+..|+..+||.++|+++...+..-..+.++||+++|+..|++.++..+-..+..++..+..+....+ ++.++
T Consensus 85 AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll 164 (573)
T COG4987 85 ATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLL 164 (573)
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3468889999999999999999999999999999999999999999876555555544433322211 11111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchh----HHH---HHHHH--------------HHhh---
Q psy3001 77 ----FFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVG----RVL---SRFSS--------------DVNT--- 128 (602)
Q Consensus 77 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~---~r~~~--------------~~~~--- 128 (602)
++..+++|...+...+....+..+....+... +.+...| .++ +++.. ..+.
T Consensus 165 ~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~-~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~ 243 (573)
T COG4987 165 GLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQ-FTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTG 243 (573)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122223322222222221111111111111 1111122 000 11110 0000
Q ss_pred hhhHH-HH-----HHHHH--------------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCccc
Q psy3001 129 LDNKL-TL-----SVQQT--------------------LSQPFKITQTLNWLV-RMTSDVETNIVAVERIKEYGETPQEA 181 (602)
Q Consensus 129 ~~~~~-~~-----~~~~~--------------------~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ri~~~~~~~~~~ 181 (602)
..+.+ .+ .++.+ +-..+....++..+. ..+..+.+...+.+|+.++.+++++.
T Consensus 244 ~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~ 323 (573)
T COG4987 244 LSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV 323 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCccc
Confidence 00000 00 00000 001122233344444 45577788889999999999887765
Q ss_pred ccccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 182 EWVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
... .+... -+ ...++++||||+|+.. +|.+||+|+||||||||++++.|.++|++|+|.++|
T Consensus 324 ~~~-~~~~~--~~-~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 324 TFP-DEQTA--TT-GQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred CCC-ccccC--Cc-cceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 432 11000 01 1156777777777542 288999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH-
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS- 326 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 326 (602)
.++..++...+|+.+++++|. +.+| .++++.|-..... . ...++.++...
T Consensus 400 ~~~~~l~~~~~~e~i~vl~Qr-----------~hlF-------------~~Tlr~NL~lA~~----~-AsDEel~~aL~q 450 (573)
T COG4987 400 VEIASLDEQALRETISVLTQR-----------VHLF-------------SGTLRDNLRLANP----D-ASDEELWAALQQ 450 (573)
T ss_pred cChhhCChhhHHHHHhhhccc-----------hHHH-------------HHHHHHHHhhcCC----C-CCHHHHHHHHHH
Confidence 999999999999999999996 4444 5555444222110 1 11111111111
Q ss_pred HHHHH-Hhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEE
Q psy3001 327 RQLKR-LESV--SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLT 403 (602)
Q Consensus 327 ~~~~~-l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 403 (602)
.+++. ++.. +....+++.|..+|| |||||++|||+|++|.++++|||||.+||+.|++++.+.+....+++|+|+
T Consensus 451 vgL~~l~~~~p~gl~t~lge~G~~LSG--GE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~ 528 (573)
T COG4987 451 VGLEKLLESAPDGLNTWLGEGGRRLSG--GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLM 528 (573)
T ss_pred cCHHHHHHhChhhhhchhccCCCcCCc--hHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEE
Confidence 11111 1111 334467888999995 999999999999999999999999999999999999999999888999999
Q ss_pred eeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHH
Q psy3001 404 IAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
||||+..+..||||++|++|++++.|+|.+++.+ ++.|+.+.
T Consensus 529 vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~ 570 (573)
T COG4987 529 VTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLY 570 (573)
T ss_pred EecccccHhhcCEEEEEECCeeeecCCHHhhhcc-ccHHHHHh
Confidence 9999999999999999999999999999999985 55555543
No 42
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=2.5e-50 Score=440.38 Aligned_cols=354 Identities=21% Similarity=0.276 Sum_probs=241.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC--CCceEEECCeecCCCChHH-Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~--~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++...+... .++.++|++|++..
T Consensus 14 ~~il~~isl~i~~G-e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~--- 89 (500)
T TIGR02633 14 VKALDGIDLEVRPG-ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTL--- 89 (500)
T ss_pred eEeecceEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeecccc---
Confidence 35799999999998 99999999999999999999999987 7999999999998766544 45679999997421
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc-c------chhHHHHHHHHHHHHHHhhcccCCcc-cccCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-C------SNLQRFYVATSRQLKRLESVSRSPIY-SHFGE 346 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 346 (602)
+. .. ++.+++.... . ....... .+..+.++.++..... .....
T Consensus 90 --------~~------------~~------tv~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~ 140 (500)
T TIGR02633 90 --------VP------------EL------SVAENIFLGNEITLPGGRMAYNAMY---LRAKNLLRELQLDADNVTRPVG 140 (500)
T ss_pred --------CC------------CC------cHHHHHHhhccccccccccCHHHHH---HHHHHHHHHcCCCCCcccCchh
Confidence 10 00 0000000000 0 0001111 1222233344433222 23345
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
.+| ||||||++|||||+.+|++|||||||++||+.+..++.+.|+++. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 141 ~LS--gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~ 218 (500)
T TIGR02633 141 DYG--GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218 (500)
T ss_pred hCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCe
Confidence 677 699999999999999999999999999999999999999998864 46899999999999987 99999999999
Q ss_pred EEeecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhh-hHHHHHHHHHHHh-cccccccceeeEEecceeEEEECCCC
Q psy3001 425 VVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGN-LITFSAALLAVLS-KETLNAGLVGLSVSYAMQVGIVGRTG 502 (602)
Q Consensus 425 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~i~~Ge~v~ivG~nG 502 (602)
++..+++++.... ...............+....+... .+.+.+....+.. .....++++||++++||++||+|+||
T Consensus 219 i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NG 296 (500)
T TIGR02633 219 HVATKDMSTMSED--DIITMMVGREITSLYPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVG 296 (500)
T ss_pred EeeecCcccCCHH--HHHHHHhCccccccccccccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCC
Confidence 9988876654221 111111000000000000000000 1111111111100 11224567999999999999999999
Q ss_pred CChHHHHHHHHhccCC-CCceEEECCeecCCCCh-hhhhccceEecCCc---cccc-cchhcccCCCC--------C-C-
Q psy3001 503 AGKSSLTLALFRIIEP-ADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDP---VLFS-GTLRLNLDPVG--------E-S- 566 (602)
Q Consensus 503 sGKSTLl~~L~g~~~~-~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp---~lf~-~Tv~~nl~~~~--------~-~- 566 (602)
||||||+++|+|+++| ++|+|.++|+++...+. ..+|++++||||++ .+|. .||++|+.... . .
T Consensus 297 sGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~ 376 (500)
T TIGR02633 297 AGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDA 376 (500)
T ss_pred CCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCH
Confidence 9999999999999995 89999999998865443 45678899999997 3665 49999985321 1 1
Q ss_pred --cHHHHHHHHHHcCCCc-cccccc
Q psy3001 567 --SDEAIWKALELAHLNT-FVSNLP 588 (602)
Q Consensus 567 --~~~~i~~al~~~~l~~-~~~~~~ 588 (602)
..+++.++++.+++.+ ..++.|
T Consensus 377 ~~~~~~~~~~l~~~~l~~~~~~~~~ 401 (500)
T TIGR02633 377 AAELQIIGSAIQRLKVKTASPFLPI 401 (500)
T ss_pred HHHHHHHHHHHHhcCccCCCccCcc
Confidence 1245888999999853 344433
No 43
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1e-47 Score=435.27 Aligned_cols=407 Identities=25% Similarity=0.360 Sum_probs=272.2
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWIN-CLFSVLYLMP--VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~ 80 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+ +|++.+++++...+...+. .++.++.+++ ++.+.+.+.
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 283 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999 6999999887554444433 2222222111 111211111
Q ss_pred H--HHHHHHH---HHH---HHHHHHHHHHhhcccchhhhhcchh----H-------HHHHHHHHHhh----------hh-
Q psy3001 81 F--VISLGTL---FAA---KRLHEKLLKSMLRWSPLFFDTTPVG----R-------VLSRFSSDVNT----------LD- 130 (602)
Q Consensus 81 ~--~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~g----~-------~~~r~~~~~~~----------~~- 130 (602)
+ .+++..+ ... ++...+..+...+ ....+.+...| + ..+++.+..+. ..
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAA-ATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111 111 1111122222222 11233333333 1 11222221000 00
Q ss_pred ------hHH-------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 131 ------NKL-------------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 131 ------~~~-------------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
..+ .+++|.+ ..+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 000 0123322 233445667888888999999999999999999998766533
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
.. ... ......+.++|+||+|+|+++ ++.+||+|+||||||||+|+|+|+++|++|+|.+||+
T Consensus 443 ~~--~~~-~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~ 519 (694)
T TIGR01846 443 SA--GLA-ALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGV 519 (694)
T ss_pred CC--CCC-CCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 11 100 011123568888888888532 2779999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR- 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (602)
++++++...+|+.+++|||+ +.+| .+++..|-.... +. ...++.......
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~-----------~~lf-------------~~ti~eNi~~~~----~~-~~~~~i~~a~~~~ 570 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQE-----------NVLF-------------SRSIRDNIALCN----PG-APFEHVIHAAKLA 570 (694)
T ss_pred ehhhCCHHHHHHhCeEEccC-----------Ceeh-------------hhhHHHHHhcCC----CC-CCHHHHHHHHHHc
Confidence 99999999999999999998 5555 333332211100 00 111111111111
Q ss_pred HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 ~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
.+ +.+.. .+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+|
T Consensus 571 ~l~~~i~~lp~gl~t~i~~~g~~LS--gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i 648 (694)
T TIGR01846 571 GAHDFISELPQGYNTEVGEKGANLS--GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIII 648 (694)
T ss_pred ChHHHHHhCcCccCcEecCCCCCCC--HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 11 11111 134445677788888 59999999999999999999999999999999999999999988778999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|||++.+..||+|++|++|++++.|+++++++. .+.|..+++
T Consensus 649 tH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~ 690 (694)
T TIGR01846 649 AHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQ 690 (694)
T ss_pred eCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHH
Confidence 999999988999999999999999999999876 466666554
No 44
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-50 Score=435.95 Aligned_cols=351 Identities=18% Similarity=0.284 Sum_probs=239.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~~ 276 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++....
T Consensus 11 ~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~--- 86 (491)
T PRK10982 11 VKALDNVNLKVRPH-SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVL--- 86 (491)
T ss_pred EEeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccccccc---
Confidence 45799999999998 99999999999999999999999999999999999998765543 45678999999742110
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc------ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP------FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg 350 (602)
. .++.+++... .......... +..+.++.++...........+|
T Consensus 87 --------------------~------~tv~~~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS- 136 (491)
T PRK10982 87 --------------------Q------RSVMDNMWLGRYPTKGMFVDQDKMYR---DTKAIFDELDIDIDPRAKVATLS- 136 (491)
T ss_pred --------------------C------CCHHHHhhcccccccccccCHHHHHH---HHHHHHHHcCCCCCccCchhhCC-
Confidence 0 0010000000 0000011111 12223334444434445566777
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
||||||++|||||+.+|++|||||||++||+.+..++.+.++++. .++|+|++||+++.+.. ||++++|++|+++..
T Consensus 137 -gGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 137 -VSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred -HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEee
Confidence 699999999999999999999999999999999999999998864 47899999999999987 999999999999999
Q ss_pred cChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhh-hhHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChHH
Q psy3001 429 DSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVG-NLITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSS 507 (602)
Q Consensus 429 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKST 507 (602)
++++++... .....+.........+....... ..+.+.+.... ....++++||++++||++||+|+|||||||
T Consensus 216 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKST 289 (491)
T PRK10982 216 QPLAGLTMD--KIIAMMVGRSLTQRFPDKENKPGEVILEVRNLTSL----RQPSIRDVSFDLHKGEILGIAGLVGAKRTD 289 (491)
T ss_pred cChhhCCHH--HHHHHHhCCCcccccccccCCCCCcEEEEeCcccc----cCcccceeeEEEeCCcEEEEecCCCCCHHH
Confidence 887765321 11111110000000000000000 00111111111 112356799999999999999999999999
Q ss_pred HHHHHHhccCCCCceEEECCeecCCCChh-hhhccceEecCCcc---ccc-cchhcc-----cCCC----C--C--CcHH
Q psy3001 508 LTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQDPV---LFS-GTLRLN-----LDPV----G--E--SSDE 569 (602)
Q Consensus 508 Ll~~L~g~~~~~~G~I~i~g~~i~~~~~~-~lr~~i~~V~Qdp~---lf~-~Tv~~n-----l~~~----~--~--~~~~ 569 (602)
|+++|+|+.+|++|+|.++|+++...+.. .+++.++|+||++. +|. .|+.+| +... + . ..++
T Consensus 290 Ll~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (491)
T PRK10982 290 IVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS 369 (491)
T ss_pred HHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH
Confidence 99999999999999999999999876653 45677999999974 454 355444 4211 1 1 1134
Q ss_pred HHHHHHHHcCCC-cccccccc
Q psy3001 570 AIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 570 ~i~~al~~~~l~-~~~~~~~~ 589 (602)
++.++++.+++. +..++.|.
T Consensus 370 ~~~~~l~~~~l~~~~~~~~~~ 390 (491)
T PRK10982 370 DTQWVIDSMRVKTPGHRTQIG 390 (491)
T ss_pred HHHHHHHhcCccCCCcccccc
Confidence 577888888885 33344433
No 45
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.4e-50 Score=444.16 Aligned_cols=346 Identities=24% Similarity=0.359 Sum_probs=234.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc--CCCCceEEEC-----------------------CeecC-
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII--EPADGTIIID-----------------------GVDIR- 251 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~--~~~~G~I~i~-----------------------g~~~~- 251 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|++ +|++|+|.++ |.++.
T Consensus 13 ~~~l~~is~~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 13 KEVLKNISFTIEEG-EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred eEeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 45899999999998 999999999999999999999997 7999999997 22221
Q ss_pred ------CCC---hHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHH
Q psy3001 252 ------TLG---LHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRF 321 (602)
Q Consensus 252 ------~~~---~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 321 (602)
... ...+++.+++++|++..++. . .++.+++.... ......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~----------------------~------~tv~~~l~~~~~~~~~~~- 142 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG----------------------D------DTVLDNVLEALEEIGYEG- 142 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCC----------------------C------CCHHHHHHHHHHHcCCCH-
Confidence 111 12456789999996211110 0 00111100000 000000
Q ss_pred HHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--ccc
Q psy3001 322 YVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHC 399 (602)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~ 399 (602)
.....+..+.++.++...........+| ||||||++|||||+.+|++|||||||++||+.+..++.+.|+++. .++
T Consensus 143 ~~~~~~~~~~l~~~gl~~~~~~~~~~LS--gGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 143 KEAVGRAVDLIEMVQLSHRITHIARDLS--GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCcccCC--HHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 0111222333444555444455566777 699999999999999999999999999999999999999998873 378
Q ss_pred EEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHh--
Q psy3001 400 TVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLS-- 476 (602)
Q Consensus 400 tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 476 (602)
|||+|||+++.+.. ||++++|++|+++..|+++++... +........ .. .........+.+......+..
T Consensus 221 tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----~~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~ 293 (520)
T TIGR03269 221 SMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV----FMEGVSEVE-KE--CEVEVGEPIIKVRNVSKRYISVD 293 (520)
T ss_pred EEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH----HHhhchhhc-cc--cccCCCCceEEEeccEEEeccCC
Confidence 99999999999987 999999999999988888776542 100000000 00 000000001111111111211
Q ss_pred -cccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEEC-Cee---cCCCC---hhhhhccceEecCC
Q psy3001 477 -KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIID-GVD---IRTLG---LHTLRSRLTIIPQD 548 (602)
Q Consensus 477 -~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~-g~~---i~~~~---~~~lr~~i~~V~Qd 548 (602)
.....++++||++++||++||+|+||||||||+++|+|+++|++|+|.++ |.+ +...+ ...++++++||||+
T Consensus 294 ~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~ 373 (520)
T TIGR03269 294 RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE 373 (520)
T ss_pred CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccC
Confidence 11234567999999999999999999999999999999999999999996 643 33322 22456789999999
Q ss_pred cccccc-chhcccCCC---C-CC--cHHHHHHHHHHcCCCc
Q psy3001 549 PVLFSG-TLRLNLDPV---G-ES--SDEAIWKALELAHLNT 582 (602)
Q Consensus 549 p~lf~~-Tv~~nl~~~---~-~~--~~~~i~~al~~~~l~~ 582 (602)
+.+|.. ||++|+... . .. .++++.++++.+++.+
T Consensus 374 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 414 (520)
T TIGR03269 374 YDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDE 414 (520)
T ss_pred cccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCC
Confidence 988764 999998521 1 11 2345788999999964
No 46
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4.7e-50 Score=437.18 Aligned_cols=355 Identities=15% Similarity=0.128 Sum_probs=243.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+|+|+|+++|++|+|.++|.++...+...+++.+++++|++...+...
T Consensus 17 ~il~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~-- 93 (490)
T PRK10938 17 KTLQLPSLTLNAG-DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP-- 93 (490)
T ss_pred eecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhccc--
Confidence 4799999999998 9999999999999999999999999999999999988776666677788999999743211000
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
.+ . .+..++.+.+.. . . ....+..+.++.++...........+| ||||||+
T Consensus 94 ~~-----------------~--~~~~~~~~~~~~----~-~---~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~qrv 144 (490)
T PRK10938 94 GE-----------------D--DTGRTTAEIIQD----E-V---KDPARCEQLAQQFGITALLDRRFKYLS--TGETRKT 144 (490)
T ss_pred ch-----------------h--hccccHHHhccc----c-h---hHHHHHHHHHHHcCCHhhhhCCcccCC--HHHHHHH
Confidence 00 0 000011111000 0 0 011122233334444444455566777 5999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
+|||||+.+|++|||||||++||+.+..++.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..|+++++..
T Consensus 145 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 145 LLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998864 46899999999999988 99999999999999998887654
Q ss_pred cchhHHHHHHHhhhhhH--HHHHHHh--------hhhhHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChH
Q psy3001 437 NKASIFYSMAKDAGLAW--LAVRLET--------VGNLITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKS 506 (602)
Q Consensus 437 ~~~~~~~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKS 506 (602)
.. ............. .+...++ ....+.+.+....+ .....+.++||++++||++||+|+||||||
T Consensus 225 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~il~~vsl~i~~Ge~~~i~G~NGsGKS 300 (490)
T PRK10938 225 QA--LVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSY--NDRPILHNLSWQVNPGEHWQIVGPNGAGKS 300 (490)
T ss_pred ch--hhhhhhhhhccCccccCcccccccccccCCCCceEEEeceEEEE--CCeeEEeeceEEEcCCCEEEEECCCCCCHH
Confidence 31 1111110000000 0000000 00001111111111 111235679999999999999999999999
Q ss_pred HHHHHHHhccCC-CCceEEECCeecCC-CChhhhhccceEecCCccccc---cchhcccCCC--------CCC---cHHH
Q psy3001 507 SLTLALFRIIEP-ADGTIIIDGVDIRT-LGLHTLRSRLTIIPQDPVLFS---GTLRLNLDPV--------GES---SDEA 570 (602)
Q Consensus 507 TLl~~L~g~~~~-~~G~I~i~g~~i~~-~~~~~lr~~i~~V~Qdp~lf~---~Tv~~nl~~~--------~~~---~~~~ 570 (602)
||+++|+|+.++ ++|+|.++|+++.. .+....|++++|+||++.++. .|+++++... ... .+++
T Consensus 301 TLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (490)
T PRK10938 301 TLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKL 380 (490)
T ss_pred HHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHH
Confidence 999999999876 69999999987642 223345778999999986542 3566654210 011 1346
Q ss_pred HHHHHHHcCCCc-ccccccc
Q psy3001 571 IWKALELAHLNT-FVSNLPA 589 (602)
Q Consensus 571 i~~al~~~~l~~-~~~~~~~ 589 (602)
+.++++.+++.+ ..++.|.
T Consensus 381 ~~~~l~~~~l~~~~~~~~~~ 400 (490)
T PRK10938 381 AQQWLDILGIDKRTADAPFH 400 (490)
T ss_pred HHHHHHHcCCchhhccCchh
Confidence 889999999986 5555444
No 47
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.6e-47 Score=421.06 Aligned_cols=405 Identities=20% Similarity=0.244 Sum_probs=264.3
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHH-HH---HHHHHHHH-
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYL-MP---VTITVFFY- 79 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~- 79 (602)
.+.+...++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++..+.. ++ .+.+.+.+
T Consensus 63 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li 142 (569)
T PRK10789 63 ASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLL 142 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46788899999999999999999999999999999999999999876555555555443322211 11 11111111
Q ss_pred -HHHHHHHHHH--HHHHHHHH----HHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hhh
Q psy3001 80 -GFVISLGTLF--AAKRLHEK----LLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LDN 131 (602)
Q Consensus 80 -~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~~ 131 (602)
.+.+++..+. ...+...+ ..+...+ ....+.+...| +.+ +++...... ...
T Consensus 143 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (569)
T PRK10789 143 ALLPMPVMAIMIKRYGDQLHERFKLAQAAFSS-LNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDA 221 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 11111111 1111111 11123333333 111 222221000 000
Q ss_pred -------H-------H------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 132 -------K-------L------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 132 -------~-------~------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
. + .+++|.+ +.+...+..|+..+...+..++.+..+.+|+.++++.+++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~ 301 (569)
T PRK10789 222 RFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVK 301 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 0 0 0122222 223344556777788888899999999999999997654432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEe---------------cCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYR---------------EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~---------------~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
..... . .+..+.+.|+|++|+|+ +| ++++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 302 ~~~~~-~---~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g 376 (569)
T PRK10789 302 DGSEP-V---PEGRGELDVNIRQFTYPQTDHPALENVNFTLKPG-QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHD 376 (569)
T ss_pred CCCCC-C---CCCCCcEEEEEEEEECCCCCCccccCeeEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECC
Confidence 11100 0 01123466666666664 33 78999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR 327 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (602)
+++.+++...+|+.+++++|+ |.+| .+++..|-.... +. ...++.......
T Consensus 377 ~~~~~~~~~~~~~~i~~v~q~-----------~~lf-------------~~ti~~Ni~~~~----~~-~~~~~~~~~~~~ 427 (569)
T PRK10789 377 IPLTKLQLDSWRSRLAVVSQT-----------PFLF-------------SDTVANNIALGR----PD-ATQQEIEHVARL 427 (569)
T ss_pred EEHhhCCHHHHHhheEEEccC-----------Ceec-------------cccHHHHHhcCC----CC-CCHHHHHHHHHH
Confidence 999999999999999999998 5555 333322211100 00 011111111110
Q ss_pred -HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEE
Q psy3001 328 -QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLT 403 (602)
Q Consensus 328 -~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 403 (602)
.+ +.+.. .+.+...++.+.++| ||||||++|||||+++|++|||||||++||+++++.+.+.+++..+++|+|+
T Consensus 428 ~~l~~~i~~lp~gl~t~~~~~g~~LS--gGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~ 505 (569)
T PRK10789 428 ASVHDDILRLPQGYDTEVGERGVMLS--GGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVII 505 (569)
T ss_pred cCCHHHHHhCcCcccceecCCCCcCC--HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 01 11111 123445666777888 5999999999999999999999999999999999999999998877899999
Q ss_pred eeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 404 IAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
||||++.+..||+|++|++|++++.|+++++++. .+.|+.+.+
T Consensus 506 itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~ 548 (569)
T PRK10789 506 SAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYR 548 (569)
T ss_pred EecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHH
Confidence 9999999988999999999999999999999876 456666554
No 48
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=3.6e-47 Score=423.34 Aligned_cols=406 Identities=25% Similarity=0.379 Sum_probs=272.0
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 80 (602)
..+.++...+|..+++++++.|.++|++.+.|++++|+++|++.+++.+...+..++..++.+++.++ ++.+.+.+.
T Consensus 80 ~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i 159 (571)
T TIGR02203 80 WVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLI 159 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45678899999999999999999999999999999999999999999887666666655544433222 122211111
Q ss_pred --HHHHHHHHH--HH-HHH---HHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh-------------
Q psy3001 81 --FVISLGTLF--AA-KRL---HEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT------------- 128 (602)
Q Consensus 81 --~~~~~~~~~--~~-~~~---~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~------------- 128 (602)
+.+++..+. .. ++. ..+..+...+ ....+.+...| +.+ +++.+..+.
T Consensus 160 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 160 VVVMLPVLSILMRRVSKRLRRISKEIQNSMGQ-VTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 11 111 1111111111 11223333333 111 122221000
Q ss_pred ----hhhHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .+++|. +..+...+..|+..+......++++..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 00000 011221 2333456677888888999999999999999999997655432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
.... . ..+..+.++++||+|+|++. +++++|+|+||||||||+++|+|+++|++|+|.+||+
T Consensus 319 ~~~~--~--~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 319 TGTR--A--IERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred CCCC--C--CCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 1110 0 01123467788888877431 2789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR- 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (602)
++.+++...++++++|+||+ |++| .++++.|-.... +.....++.......
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~-----------~~lf-------------~~Ti~~Ni~~~~----~~~~~~~~i~~~l~~~ 446 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQD-----------VVLF-------------NDTIANNIAYGR----TEQADRAEIERALAAA 446 (571)
T ss_pred eHHhcCHHHHHhhceEEccC-----------cccc-------------cccHHHHHhcCC----CCCCCHHHHHHHHHHc
Confidence 99999999999999999998 6666 444433311100 000111111111111
Q ss_pred HHH-HHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 QLK-RLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 ~~~-~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
.++ .+.. .+.+..+++.|.++| ||||||++||||++++|+|++||||||+||+++++.+.+.|++..+++|+|+|
T Consensus 447 ~l~~~i~~lp~gldt~i~~~g~~LS--gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIii 524 (571)
T TIGR02203 447 YAQDFVDKLPLGLDTPIGENGVLLS--GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI 524 (571)
T ss_pred ChHHHHHhCcCcccceecCCCCcCC--HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 111 1111 233445667778888 59999999999999999999999999999999999999999988788999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 445 (602)
|||++.+..||+|++|++|++++.|+++++++. ++.|...
T Consensus 525 tH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~ 564 (571)
T TIGR02203 525 AHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQL 564 (571)
T ss_pred ehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHH
Confidence 999999888999999999999999999999876 4455443
No 49
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=7.3e-47 Score=419.21 Aligned_cols=405 Identities=23% Similarity=0.294 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHH
Q psy3001 8 RASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFY--GFV 82 (602)
Q Consensus 8 ~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~ 82 (602)
++..++|.++|+|++++|++||+++++|++++|+++|++.+...+...+..++..++.+++.++ .+.+.+.+ .+.
T Consensus 86 ~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 165 (585)
T TIGR01192 86 GRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVL 165 (585)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666799999999999999999999999999999999988776655555554444332211 11111111 111
Q ss_pred HHHHHHH---HHHHH---HHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh-----------------
Q psy3001 83 ISLGTLF---AAKRL---HEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------------- 128 (602)
Q Consensus 83 ~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------------- 128 (602)
+++..+. ..++. ..+..+...+ ....+.+...| +.+ +++.+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (585)
T TIGR01192 166 GILYILIAKLVMQRTKNGQAAVEHHYHN-VFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASG 244 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11111 1111111111 11223333333 111 122110000
Q ss_pred hhhHH-------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC
Q psy3001 129 LDNKL-------------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVND 186 (602)
Q Consensus 129 ~~~~~-------------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~ 186 (602)
+...+ .++++.+ +.+...+..|+..+.+....+..+..+.+|+.++.+.+++.+....
T Consensus 245 ~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~ 324 (585)
T TIGR01192 245 LNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD 324 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc
Confidence 00000 0112221 2233345567777788888889999999999999876543221100
Q ss_pred CCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC
Q psy3001 187 KKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253 (602)
Q Consensus 187 ~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~ 253 (602)
.....+..+.++|+|++|+|+++ ++.++|+|+||||||||+++|+|+++|++|+|.+||.++.++
T Consensus 325 --~~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 325 --APELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV 402 (585)
T ss_pred --CCCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC
Confidence 00000123457777887777531 278999999999999999999999999999999999999999
Q ss_pred ChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHH-HH-H
Q psy3001 254 GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSR-QL-K 330 (602)
Q Consensus 254 ~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~ 330 (602)
+...+|+.++++||+ +.+| .+++..| +.... ....++....... .+ +
T Consensus 403 ~~~~~~~~i~~v~q~-----------~~lf-------------~~ti~~N------i~~~~~~~~~~~~~~a~~~~~~~~ 452 (585)
T TIGR01192 403 TRESLRKSIATVFQD-----------AGLF-------------NRSIREN------IRLGREGATDEEVYEAAKAAAAHD 452 (585)
T ss_pred CHHHHHhheEEEccC-----------CccC-------------cccHHHH------HhcCCCCCCHHHHHHHHHHhCcHH
Confidence 999999999999998 4444 2222222 11100 0011111111111 11 1
Q ss_pred HHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecc
Q psy3001 331 RLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRL 408 (602)
Q Consensus 331 ~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l 408 (602)
.+.. .+.+...++.+..+| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+||||+
T Consensus 453 ~i~~l~~g~~t~~~~~~~~LS--gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~ 530 (585)
T TIGR01192 453 FILKRSNGYDTLVGERGNRLS--GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRL 530 (585)
T ss_pred HHHhccccccchhcCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCh
Confidence 1111 123344667777888 599999999999999999999999999999999999999998887789999999999
Q ss_pred cccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHh
Q psy3001 409 NTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKD 448 (602)
Q Consensus 409 ~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 448 (602)
+.+..||+|++|++|++++.|++++++++ .+.|+.++..
T Consensus 531 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~ 569 (585)
T TIGR01192 531 STVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLRR 569 (585)
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHHC-CChHHHHHHh
Confidence 99988999999999999999999999876 5566666543
No 50
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=1e-46 Score=419.96 Aligned_cols=405 Identities=25% Similarity=0.308 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--H
Q psy3001 8 RASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYGF--V 82 (602)
Q Consensus 8 ~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~ 82 (602)
+....++.++|+|++++|..+|++.++|++++|+++|++.+...+...+..++..++..++.++ .+.+.+.+.+ .
T Consensus 86 ~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~ 165 (588)
T PRK13657 86 RRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVL 165 (588)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455699999999999999999999999999999999887655555554444333322211 1111111111 1
Q ss_pred HHHHHH--HHHHHHHHHHH----HHhhcccchhhhhcchh----HHH-------HHHHHHHhh-----------------
Q psy3001 83 ISLGTL--FAAKRLHEKLL----KSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------------- 128 (602)
Q Consensus 83 ~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------------- 128 (602)
+++... ....+...+.. +...+ ....+.+...| +.+ +++....+.
T Consensus 166 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK13657 166 GIVYTLITTLVMRKTKDGQAAVEEHYHD-LFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASV 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11111111111 11111 11123333333 111 111110000
Q ss_pred hhhHH-------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC
Q psy3001 129 LDNKL-------------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVND 186 (602)
Q Consensus 129 ~~~~~-------------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~ 186 (602)
+...+ .++++.+ +.+...+..|+..+......+..+..+.+|+.++.+.+++.+....
T Consensus 245 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 324 (588)
T PRK13657 245 LNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC
Confidence 00000 0112222 2233445667777788888888899999999999876443221111
Q ss_pred CCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC
Q psy3001 187 KKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253 (602)
Q Consensus 187 ~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~ 253 (602)
... ..+..+.++++||+|+|+++ ++.++|+|+||||||||+|+|+|+++|++|+|.+||.++.++
T Consensus 325 ~~~--~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~ 402 (588)
T PRK13657 325 AID--LGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV 402 (588)
T ss_pred CCC--cCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhC
Confidence 000 00122457888888888531 278999999999999999999999999999999999999999
Q ss_pred ChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-HH-HH
Q psy3001 254 GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-QL-KR 331 (602)
Q Consensus 254 ~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 331 (602)
+...+|++|+|+||+ |.+| .+++..|-.... +.. ..++....... .+ +.
T Consensus 403 ~~~~~r~~i~~v~Q~-----------~~lf-------------~~Ti~~Ni~~~~----~~~-~d~~i~~al~~~~l~~~ 453 (588)
T PRK13657 403 TRASLRRNIAVVFQD-----------AGLF-------------NRSIEDNIRVGR----PDA-TDEEMRAAAERAQAHDF 453 (588)
T ss_pred CHHHHHhheEEEecC-----------cccc-------------cccHHHHHhcCC----CCC-CHHHHHHHHHHhCHHHH
Confidence 999999999999998 5555 334333311100 000 11111111110 11 11
Q ss_pred Hhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccc
Q psy3001 332 LES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN 409 (602)
Q Consensus 332 l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 409 (602)
+.. .+.+..+++.|.++| ||||||++|||||+++|+++|||||||+||+++++.+.+.+++..+++|+|+||||++
T Consensus 454 i~~lp~gldt~i~~~g~~LS--gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~ 531 (588)
T PRK13657 454 IERKPDGYDTVVGERGRQLS--GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLS 531 (588)
T ss_pred HHhCcccccchhcCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHH
Confidence 111 123444666777888 5999999999999999999999999999999999999999988877899999999999
Q ss_pred ccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 410 ~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
.+..||+|++|++|++++.|+++++++. .+.|..+..
T Consensus 532 ~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~ 568 (588)
T PRK13657 532 TVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLR 568 (588)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHH
Confidence 9988999999999999999999999876 456666554
No 51
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=2e-47 Score=420.93 Aligned_cols=370 Identities=20% Similarity=0.229 Sum_probs=238.5
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYGF 81 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 81 (602)
.+.++..++|.++|+|++++|.+||+++++|++++|+++|++.++..+...+..++..++.++..++ ++.+.+.+..
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 159 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVL 159 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567789999999999999999999999999999999999999999877666655555443332222 1222111111
Q ss_pred --HHHHHHHH---HHHHH----HHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hh-
Q psy3001 82 --VISLGTLF---AAKRL----HEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LD- 130 (602)
Q Consensus 82 --~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~- 130 (602)
.+++..+. ...+. ..+..+...+ ....+.|...| +.+ +++.+.... ..
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02868 160 AAGLLLAGFVAPLVSLRAARAAEVALARLRSQ-LYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATG 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 11111 1111122222 12234444444 111 222221000 00
Q ss_pred ------hHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 131 ------NKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 131 ------~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
..+ .++.+. ++.+...+..++..+.+....++.+..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (529)
T TIGR02868 239 LGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRP 318 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC
Confidence 000 001111 1222334556677778888899999999999999998665432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
...........+..+.++|+||+|+|+++ ++.+||||+||||||||+++|+|+++|++|+|.+||+|
T Consensus 319 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~ 398 (529)
T TIGR02868 319 EGVVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS 398 (529)
T ss_pred CCCCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 11111011111223568888888888532 37899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHH-
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSR- 327 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 327 (602)
++++ ..++|++++||||+ |++| .+++..| +.... ....++.......
T Consensus 399 i~~~-~~~lr~~i~~V~Q~-----------~~lF-------------~~TI~eN------I~~g~~~~~~e~i~~al~~a 447 (529)
T TIGR02868 399 VSSL-QDELRRRISVFAQD-----------AHLF-------------DTTVRDN------LRLGRPDATDEELWAALERV 447 (529)
T ss_pred hhhH-HHHHHhheEEEccC-----------cccc-------------cccHHHH------HhccCCCCCHHHHHHHHHHc
Confidence 9999 99999999999998 6666 3443333 11100 0011111111110
Q ss_pred HHH-HHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 QLK-RLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 ~~~-~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
.++ .+.. .+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+|
T Consensus 448 ~l~~~i~~lp~GldT~ige~G~~LS--GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 448 GLADWLRSLPDGLDTVLGEGGARLS--GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred CCHHHHHhCcccccchhccccCcCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 011 1111 123445677888888 59999999999999999999999999999999999999999988788999999
Q ss_pred eecc
Q psy3001 405 AHRL 408 (602)
Q Consensus 405 tH~l 408 (602)
|||+
T Consensus 526 tHrl 529 (529)
T TIGR02868 526 THHL 529 (529)
T ss_pred ecCC
Confidence 9995
No 52
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=4.2e-46 Score=415.03 Aligned_cols=408 Identities=25% Similarity=0.377 Sum_probs=265.7
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFY-- 79 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-- 79 (602)
.+.++...+|..++++++++|..+|++.++|++++|+++|++.+++.+...+..++..++.+++.++ .+.+.+..
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567889999999999999999999999999999999999999998876655555544433332221 11111111
Q ss_pred HHHHHHHH--HHHH-H---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh--------------
Q psy3001 80 GFVISLGT--LFAA-K---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT-------------- 128 (602)
Q Consensus 80 ~~~~~~~~--~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~-------------- 128 (602)
.+.+++.. .... + +...+..+...+ ....+.+...| +.+ +++....+.
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIAD-AGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 1111 1 111111211111 11122333322 111 122211000
Q ss_pred ---hhhHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 129 ---LDNKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 129 ---~~~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
+...+ .++++. +..+...+..|+..+...+..+.++..+++|+.++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 00000 011221 12233455667888888999999999999999999876544221
Q ss_pred ccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 184 VNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
... ......+..+.++|+||+|+|+++ +|.++|+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 324 ~~~-~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 324 PAH-PKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred CCC-CccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 100 000111223457777777777421 2789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR- 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (602)
++.+++...+++.++|+||+ |++| ++++..|-.... +.. ..++.......
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~-----------~~lf-------------~~Ti~~Ni~~~~----~~~-~~~~~~~~l~~~ 453 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQD-----------PVLF-------------AASVMENIRYGR----PDA-TDEEVEAAARAA 453 (576)
T ss_pred EHHhcCHHHHHHhceEEccC-----------Cccc-------------cccHHHHHhcCC----CCC-CHHHHHHHHHHc
Confidence 99999999999999999998 5555 444433321100 000 11111111111
Q ss_pred H-HHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 Q-LKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 ~-~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
. .+.+.. .+.+..+++.|.++| ||||||++||||++++|++||||||||+||+++++.+.+.+++..+++|+|+|
T Consensus 454 ~l~~~i~~l~~gl~t~i~~~g~~LS--gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~Iii 531 (576)
T TIGR02204 454 HAHEFISALPEGYDTYLGERGVTLS--GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLII 531 (576)
T ss_pred CcHHHHHhCCCCCCceeCCCCCcCC--HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0 111111 133344566777888 59999999999999999999999999999999999999999988778999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
|||++.+..||+|+++++|++++.|+++++++. .+.|+.+.
T Consensus 532 tH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~ 572 (576)
T TIGR02204 532 AHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLA 572 (576)
T ss_pred ecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHH
Confidence 999999988999999999999999999998765 45555443
No 53
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-46 Score=371.83 Aligned_cols=270 Identities=29% Similarity=0.454 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCC-CCCCcEEEeeeEEEEecC--------
Q psy3001 141 LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEW-PEKGEVEFKDYKVRYREG-------- 211 (602)
Q Consensus 141 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~vs~~~~~~-------- 211 (602)
-.+.+++..|+..+.....++.+++...++..+++..+.+..... ..+.-| ...+.+.|+||+|.|.+.
T Consensus 206 Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~p--da~~L~~~~~g~v~F~~V~F~y~~~r~iL~~is 283 (497)
T COG5265 206 NALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAP--DAPPLWPVRLGAVAFINVSFAYDPRRPILNGIS 283 (497)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCC--CCccccccccceEEEEEEEeeccccchhhcCcc
Confidence 345667788888999999999999999999999988766543211 111123 245789999999999763
Q ss_pred -----CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeee
Q psy3001 212 -----LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVI 286 (602)
Q Consensus 212 -----~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~ 286 (602)
++.+|+||+||+||||++++|.++|++++|.|.+||+|+++.....+|+.||+|||+ .++|
T Consensus 284 f~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQD-----------tvLF--- 349 (497)
T COG5265 284 FTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQD-----------TVLF--- 349 (497)
T ss_pred ccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCccc-----------ceeh---
Confidence 267999999999999999999999999999999999999999999999999999998 5555
Q ss_pred cccceeeeccccceeec----ccc---cccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHH
Q psy3001 287 VPVSVLYFFIQVSLIFT----EDV---KPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLIC 359 (602)
Q Consensus 287 ~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~ 359 (602)
..++..| .+. ++.......+..+.++...|++++ ..+++.|-.+| ||||||||
T Consensus 350 ----------NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~--------t~VgerglklS--ggekqrva 409 (497)
T COG5265 350 ----------NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYD--------TGVGERGLKLS--GGEKQRVA 409 (497)
T ss_pred ----------hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhh--------cccchheeecc--CchHHHHH
Confidence 2222222 000 000000122233333444444433 34788888888 59999999
Q ss_pred HHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcch
Q psy3001 360 LARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKA 439 (602)
Q Consensus 360 lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 439 (602)
|||+++++|+||+|||+||+||..||+.++..|+....++|.++|+||++++.+||+|+||++|+|+|.|+|++++.. +
T Consensus 410 iar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~-~ 488 (497)
T COG5265 410 IARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA-G 488 (497)
T ss_pred HHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 7
Q ss_pred hHHHHHHH
Q psy3001 440 SIFYSMAK 447 (602)
Q Consensus 440 ~~~~~~~~ 447 (602)
+.|..+|.
T Consensus 489 g~ya~mw~ 496 (497)
T COG5265 489 GLYAEMWR 496 (497)
T ss_pred ChHHHHhc
Confidence 78877763
No 54
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=7.7e-46 Score=408.29 Aligned_cols=381 Identities=21% Similarity=0.279 Sum_probs=245.5
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHH--H
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVF--F 78 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~ 78 (602)
..+.+...++|.++|++++++|..+|+++++|++++|+++|++.++..+...+..++..++..+..++ .+.+.+ +
T Consensus 70 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 149 (529)
T TIGR02857 70 RAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLI 149 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35678889999999999999999999999999999999999999998876655555554433322221 111111 1
Q ss_pred HHHHHHHHHH---HHHHHH---HHHHHHHhhcccchhhhhcchh----HH-------HHHHHHHHhh-------------
Q psy3001 79 YGFVISLGTL---FAAKRL---HEKLLKSMLRWSPLFFDTTPVG----RV-------LSRFSSDVNT------------- 128 (602)
Q Consensus 79 ~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~g----~~-------~~r~~~~~~~------------- 128 (602)
..+.+++..+ ...++. ..+..+...+ ....+.+...| +. .+++.+....
T Consensus 150 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (529)
T TIGR02857 150 LLLTAPLIPIFMILIGWAAQAAARKQWAALSR-LSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAF 228 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 111111 1111112122 11233343333 11 1222221000
Q ss_pred ----hhhHH-------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .++++.+ +.+...+..|+..+...+..++.+..+.+|+.++++.+++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~ 308 (529)
T TIGR02857 229 LSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA 308 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 00000 0011111 122334455677777888999999999999999997543321
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
.. . . ...+..+.++|+||+|+|+++ ++.++|+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 309 ~~--~-~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~ 384 (529)
T TIGR02857 309 GK--A-P-VTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGV 384 (529)
T ss_pred CC--c-C-CCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 10 0 0 011122467888888888531 2779999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR- 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (602)
++.+++..++|+++++|+|+ |++| .+++..|-.... +.. ..++.......
T Consensus 385 ~i~~~~~~~lr~~i~~v~Q~-----------~~lf-------------~~ti~~Ni~~~~----~~~-~~~~i~~a~~~~ 435 (529)
T TIGR02857 385 PLADADADSWRDQIAWVPQH-----------PFLF-------------AGTIAENIRLAR----PDA-SDAEIRRALERA 435 (529)
T ss_pred ehhhCCHHHHHhheEEEcCC-----------Cccc-------------CcCHHHHHhccC----CCC-CHHHHHHHHHHc
Confidence 99999999999999999998 5555 333333211100 000 00111111100
Q ss_pred HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 ~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
.+ +.++. .+.+..+++.|.++| ||||||++||||++++|+++|||||||+||+++++.+.+.+++..+++|+|+|
T Consensus 436 ~l~~~i~~lp~Gldt~v~e~g~~LS--gGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i 513 (529)
T TIGR02857 436 GLDEFVAALPQGLDTLIGEGGAGLS--GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLV 513 (529)
T ss_pred CcHHHHHhCcccccchhccccccCC--HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 01 11111 122334667788888 59999999999999999999999999999999999999999988788999999
Q ss_pred eecccccccCCeEEEE
Q psy3001 405 AHRLNTIIDSDRVLVL 420 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l 420 (602)
|||++.+..||+|++|
T Consensus 514 tH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 514 THRLALAERADRIVVL 529 (529)
T ss_pred ecCHHHHHhCCEEEeC
Confidence 9999999889999875
No 55
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-46 Score=411.12 Aligned_cols=360 Identities=19% Similarity=0.213 Sum_probs=224.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|. ..++|++|++........
T Consensus 14 ~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~tv 81 (530)
T PRK15064 14 KPLFENISVKFGGG-NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKLRQDQFAFEEFTV 81 (530)
T ss_pred cEeEeCCEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEeccCCcCCCCcH
Confidence 45899999999998 999999999999999999999999999999999872 358999997421100000
Q ss_pred CCceeEeeecccceeeeccc-c-ceeecccccccccccccchhHHH------HHHHHHHHHHHhhcccCCcc-cccCCcC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQ-V-SLIFTEDVKPLIITPFCSNLQRF------YVATSRQLKRLESVSRSPIY-SHFGETV 348 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~-~~~~~~l 348 (602)
. ..+. .+......... . .............. ........ +....+..+.++.++..... ......+
T Consensus 82 ~-e~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 156 (530)
T PRK15064 82 L-DTVI---MGHTELWEVKQERDRIYALPEMSEEDGM-KVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEV 156 (530)
T ss_pred H-HHHH---HhhHHHHHHHHHHHHHhcccccccchHH-HHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhc
Confidence 0 0000 00000000000 0 00000000000000 00000000 00111222333344443222 2334567
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEE-
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV- 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~- 426 (602)
| ||||||++|||||+.+|++|||||||++||+.+..++.+.|++ .+.|||+|||+++.+.. ||+|++|++|+++
T Consensus 157 S--gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~ 232 (530)
T PRK15064 157 A--PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMADLDYGELRV 232 (530)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEE
Confidence 7 6999999999999999999999999999999999999999874 47899999999999988 9999999999994
Q ss_pred eecChhHHhhcchhHHHHHHHh----h-h---h-hHHHH----------------HHHhhhh-hHHHH--H-HH------
Q psy3001 427 EFDSPSVLMKNKASIFYSMAKD----A-G---L-AWLAV----------------RLETVGN-LITFS--A-AL------ 471 (602)
Q Consensus 427 ~~g~~~~l~~~~~~~~~~~~~~----~-~---~-~~~~~----------------~~~~~~~-~~~~~--~-~~------ 471 (602)
..|++++++...........+. . . . .+... ..+.... ..... . ..
T Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (530)
T PRK15064 233 YPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEEVKPSSRQNPFIRFEQD 312 (530)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccccCCccccCceeeCCCC
Confidence 6788877654322111111000 0 0 0 00000 0000000 00000 0 00
Q ss_pred H----HHHhc--------ccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhh
Q psy3001 472 L----AVLSK--------ETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 539 (602)
Q Consensus 472 ~----~~~~~--------~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr 539 (602)
. ..+.. ....+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++| +
T Consensus 313 ~~~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~ 381 (530)
T PRK15064 313 KKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------N 381 (530)
T ss_pred CCCCCceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------c
Confidence 0 00000 01124568999999999999999999999999999999999999999988 3
Q ss_pred ccceEecCCcc--ccc-cchhcccCCC--CCCcHHHHHHHHHHcCCC-cccccccc
Q psy3001 540 SRLTIIPQDPV--LFS-GTLRLNLDPV--GESSDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 540 ~~i~~V~Qdp~--lf~-~Tv~~nl~~~--~~~~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
++++|+||++. ++. .|+++|+... ....++++.++++.+++. +..++.+.
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 437 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVK 437 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCccc
Confidence 57999999984 333 4899987532 223456789999999984 45444443
No 56
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=389.50 Aligned_cols=319 Identities=25% Similarity=0.371 Sum_probs=231.8
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~ 275 (602)
+...+++|||+..+| |++||+|+||||||||+|+|+|.|+|++|+|.++|+++.-.++. .....|..|.|++...
T Consensus 20 gV~AL~~v~l~v~~G-EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~--- 95 (500)
T COG1129 20 GVKALDGVSLTVRPG-EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLV--- 95 (500)
T ss_pred CceeeccceeEEeCc-eEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhcc---
Confidence 456899999999999 99999999999999999999999999999999999999877765 4567899999984421
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc-------ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-------FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETV 348 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 348 (602)
| +-++.+++... ...+.......+.+.++. ++........-.+|
T Consensus 96 ----p----------------------~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~---lg~~~~~~~~v~~L 146 (500)
T COG1129 96 ----P----------------------NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLAR---LGLDIDPDTLVGDL 146 (500)
T ss_pred ----C----------------------CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHH---cCCCCChhhhhhhC
Confidence 1 11111111000 011222333333444443 22211122223345
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
| .||||.|+||||+..++++||||||||+|+....+.+++.+++++ +|.++|+||||++++.. ||||.||+||+.+
T Consensus 147 s--iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v 224 (500)
T COG1129 147 S--IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224 (500)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEe
Confidence 5 699999999999999999999999999999999999999999975 58999999999999998 9999999999999
Q ss_pred eecCh-hHHhhcchhHHHHHHHh-hhhhHHHHHHHhhhhhHHHHHHHHHHHhccccc----ccceeeEEecceeEEEECC
Q psy3001 427 EFDSP-SVLMKNKASIFYSMAKD-AGLAWLAVRLETVGNLITFSAALLAVLSKETLN----AGLVGLSVSYAMQVGIVGR 500 (602)
Q Consensus 427 ~~g~~-~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~Ge~v~ivG~ 500 (602)
...+. .+.-. ......+..+ ....+......... ...++.+.+. ..+++|++++||++||.|.
T Consensus 225 ~~~~~~~~~~~--~~lv~~MvGr~~~~~~~~~~~~~~~---------~~~l~v~~l~~~~~~~dvSf~vr~GEIlGiaGL 293 (500)
T COG1129 225 GTRPTAAETSE--DELVRLMVGRELEDLFPEPPEEGIG---------EPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGL 293 (500)
T ss_pred eecccccCCCH--HHHHHHhhCcchhhhcccccccCCC---------CcEEEEecCCCCCceeCceeEEeCCcEEEEecc
Confidence 87763 44321 2222222211 11111100000000 0111112221 3469999999999999999
Q ss_pred CCCChHHHHHHHHhccCCCCceEEECCeecCCCCh-hhhhccceEecCCcc---c-cccchhcccC
Q psy3001 501 TGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDPV---L-FSGTLRLNLD 561 (602)
Q Consensus 501 nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp~---l-f~~Tv~~nl~ 561 (602)
-|||+|.|+++|+|..++.+|+|.+||++++..++ ++++..|+|||.|.- + ...+|++|+.
T Consensus 294 vGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~ 359 (500)
T COG1129 294 VGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENIT 359 (500)
T ss_pred ccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHhee
Confidence 99999999999999999999999999999987776 578889999999983 3 4569999984
No 57
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=3.5e-44 Score=395.69 Aligned_cols=382 Identities=18% Similarity=0.192 Sum_probs=241.5
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 80 (602)
..+.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++++.. +..++..++.+++.++ ++.+.+.+.
T Consensus 79 ~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li 157 (555)
T TIGR01194 79 YAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAI 157 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 357788999999999999999999999999999999999999999987754 4444444333322221 122211111
Q ss_pred --HHHHHHHHH--HHHHHHHHH----HHHhhcccchhhhhcchh----HHHH---------HHHHHHhh----------h
Q psy3001 81 --FVISLGTLF--AAKRLHEKL----LKSMLRWSPLFFDTTPVG----RVLS---------RFSSDVNT----------L 129 (602)
Q Consensus 81 --~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~g----~~~~---------r~~~~~~~----------~ 129 (602)
+.+++..+. ...+...+. .+...+ ....+.+...| +.++ ++.+..+. .
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
T TIGR01194 158 TISAIIIGTAAQLLAFMGGFKFFHAARDEEDA-FNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILI 236 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 111111111 111111111 111111 11123333333 1111 11110000 0
Q ss_pred h-------hHH----------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 130 D-------NKL----------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 130 ~-------~~~----------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
. ..+ .++++. ++.+...+..|+..+.+.+..++.+..+.+|+.++.+.+.+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~ 316 (555)
T TIGR01194 237 FIAAENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEP 316 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 0 000 001121 23334456678888889999999999999999999753211100
Q ss_pred c---cCCCCC---CCCCCCCcEEEeeeEEEEecC-----------------CceEEEEeccCCChhHHHHHHhcccCCCC
Q psy3001 184 V---NDKKPK---DEWPEKGEVEFKDYKVRYREG-----------------LELVGIVGRTGAGKSSLTLALFRIIEPAD 240 (602)
Q Consensus 184 ~---~~~~~~---~~~~~~~~i~~~~vs~~~~~~-----------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~ 240 (602)
. ...... ......+.++|+||+|+|++. +++++|+||||||||||+++|+|+++|++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~ 396 (555)
T TIGR01194 317 ELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE 396 (555)
T ss_pred cccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 0 000000 001123457788888877421 27799999999999999999999999999
Q ss_pred ceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHH
Q psy3001 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQR 320 (602)
Q Consensus 241 G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (602)
|+|.+||.++.+++...+|+.+++++|+ +.+| .+++..|.. +. ..
T Consensus 397 G~i~~~g~~i~~~~~~~~~~~i~~v~q~-----------~~lf-------------~~ti~~n~~-------~~-~~--- 441 (555)
T TIGR01194 397 GEILLDGAAVSADSRDDYRDLFSAIFAD-----------FHLF-------------DDLIGPDEG-------EH-AS--- 441 (555)
T ss_pred cEEEECCEECCCCCHHHHHhhCcEEccC-----------hhhh-------------hhhhhcccc-------cc-hh---
Confidence 9999999999999999999999999998 4444 333322210 00 00
Q ss_pred HHHHHHHHHHHHhhcccCCccc------ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHH-
Q psy3001 321 FYVATSRQLKRLESVSRSPIYS------HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR- 393 (602)
Q Consensus 321 ~~~~~~~~~~~l~~~~~~~~~~------~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~- 393 (602)
.++..+.++..+..+... +...++| ||||||++||||++++|++||||||||+||+++++.+.+.+.
T Consensus 442 ----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS--gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~ 515 (555)
T TIGR01194 442 ----LDNAQQYLQRLEIADKVKIEDGGFSTTTALS--TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515 (555)
T ss_pred ----HHHHHHHHHHcCCchhhcccccccCCcccCC--HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 011111112222222111 1124566 699999999999999999999999999999999999987653
Q ss_pred Hh-ccccEEEEeeecccccccCCeEEEEeCceEEee
Q psy3001 394 SE-FAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEF 428 (602)
Q Consensus 394 ~~-~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~ 428 (602)
.. .+++|+|+||||++.+..||+|++|++|++++.
T Consensus 516 ~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 516 DLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 33 357999999999998888999999999999864
No 58
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=6.7e-44 Score=393.44 Aligned_cols=378 Identities=17% Similarity=0.216 Sum_probs=238.5
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 80 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++|++.+...+.. +..++..++.+++.++ ++.+.+.+.
T Consensus 74 ~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~~~~~l~~~~~~l~li 152 (547)
T PRK10522 74 TLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLGSAAYLAWLSPKMLLV 152 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 356788999999999999999999999999999999999999999876543 3444444333322221 111111111
Q ss_pred --HHHHHHHH---HHHHHH---HHHHHHHhhcccchhhhhcchh-H------------HHHHHHHHHhh----------h
Q psy3001 81 --FVISLGTL---FAAKRL---HEKLLKSMLRWSPLFFDTTPVG-R------------VLSRFSSDVNT----------L 129 (602)
Q Consensus 81 --~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~g-~------------~~~r~~~~~~~----------~ 129 (602)
+.+++..+ ...++. ..+..+...+ ....+.+...| + ..+++...... .
T Consensus 153 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (547)
T PRK10522 153 TAIWMAVTIWGGFVLVARVYKHMATLRETEDK-LYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTF 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Confidence 11111111 111111 1111111111 11122222222 0 01111111000 0
Q ss_pred hhH-------HHH-HHH---------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 130 DNK-------LTL-SVQ---------------Q---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 130 ~~~-------~~~-~~~---------------~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
... ... ..+ . +..+...+..|+..+......++....+.+|+.++.+.+++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~ 311 (547)
T PRK10522 232 HLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF 311 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 000 000 000 0 01111223456777788888899999999999998754432211
Q ss_pred ccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 184 VNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
.. .. ..+..+.++|+||+|+|+++ ++.+||+|+||||||||+++|+|+++|++|+|.+||+++
T Consensus 312 ~~-~~---~~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 387 (547)
T PRK10522 312 PR-PQ---AFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (547)
T ss_pred cc-cc---ccCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence 10 00 01112357777777777431 278999999999999999999999999999999999999
Q ss_pred CCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHH
Q psy3001 251 RTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330 (602)
Q Consensus 251 ~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (602)
.+++...+|+++++++|+ +.+| .+++..|..- ... .+..+
T Consensus 388 ~~~~~~~~~~~i~~v~q~-----------~~lf-------------~~ti~~n~~~---------~~~-------~~~~~ 427 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTD-----------FHLF-------------DQLLGPEGKP---------ANP-------ALVEK 427 (547)
T ss_pred CCCCHHHHhhheEEEecC-----------hhHH-------------HHhhccccCc---------hHH-------HHHHH
Confidence 999999999999999998 3333 3333222100 000 00111
Q ss_pred HHhhcccCCcc--cc---cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEE
Q psy3001 331 RLESVSRSPIY--SH---FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLT 403 (602)
Q Consensus 331 ~l~~~~~~~~~--~~---~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~ 403 (602)
.++..+..... .+ .|.++| ||||||++||||++++|++||||||||+||+++++.+.+.+.+.. .++|+|+
T Consensus 428 ~~~~~~l~~~~~~~~~~~~G~~LS--gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~ 505 (547)
T PRK10522 428 WLERLKMAHKLELEDGRISNLKLS--KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFA 505 (547)
T ss_pred HHHHcCCchhhhccccCCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 11122221111 11 255677 699999999999999999999999999999999999998886543 4799999
Q ss_pred eeecccccccCCeEEEEeCceEEeec
Q psy3001 404 IAHRLNTIIDSDRVLVLDKGLVVEFD 429 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l~~G~i~~~g 429 (602)
||||++.+..||+|++|++|++++..
T Consensus 506 itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 506 ISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred EEechHHHHhCCEEEEEECCEEEEec
Confidence 99999998889999999999999774
No 59
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=1.1e-43 Score=391.85 Aligned_cols=257 Identities=21% Similarity=0.269 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCCCCCCcEEEeeeEEEEecC------------
Q psy3001 144 PFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG------------ 211 (602)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~------------ 211 (602)
...+..|+..+...+..++.+..+.+|+.++++.+++.+.. ... .+..+.++++|++|+|+++
T Consensus 267 ~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~---~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i 341 (544)
T TIGR01842 267 VGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA--MPL---PEPEGHLSVENVTIVPPGGKKPTLRGISFRL 341 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC--CCC---CCCCCeEEEEEEEEEcCCCCccccccceEEE
Confidence 34556678888889999999999999999999765543211 000 0122457777777777431
Q ss_pred --CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeeccc
Q psy3001 212 --LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPV 289 (602)
Q Consensus 212 --~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~ 289 (602)
++.++|+|+||||||||+++|+|+++|++|+|.+||+++.+++...+|+.++++||+ |++|
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~-----------~~lf------ 404 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQD-----------VELF------ 404 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCC-----------cccc------
Confidence 278999999999999999999999999999999999999999999999999999998 4444
Q ss_pred ceeeeccccceeecccccccccccccchhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHh
Q psy3001 290 SVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNVGQRQLICLARALL 365 (602)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~ 365 (602)
.+++..|-.. .......++...... ...+.++.+ +.+...++.+.++| ||||||++||||++
T Consensus 405 -------~~ti~~Ni~~-----~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS--gGq~qrl~lARall 470 (544)
T TIGR01842 405 -------PGTVAENIAR-----FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS--GGQRQRIALARALY 470 (544)
T ss_pred -------cccHHHHHhc-----cCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCC--HHHHHHHHHHHHHh
Confidence 2232222110 000011111111111 111122222 33455677788888 59999999999999
Q ss_pred hCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhh
Q psy3001 366 RKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 366 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
++|++||||||||+||+++++.+.+.+++.. +++|+|+||||++.+..||+|++|++|++++.|+++++.+
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999998875 5799999999999887799999999999999999988754
No 60
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-44 Score=399.20 Aligned_cols=353 Identities=21% Similarity=0.220 Sum_probs=221.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.+++ +..++|++|++....
T Consensus 20 ~~il~~vs~~i~~G-e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~~v~Q~~~~~~---- 83 (556)
T PRK11819 20 KQILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVGYLPQEPQLDP---- 83 (556)
T ss_pred CeeeeCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEEEecCCCCCC----
Confidence 45899999999998 99999999999999999999999999999999975 246999999843110
Q ss_pred CCceeEeeecccceeeeccccc---eeecccccccccccc---------cchhHHHH------HHHHHHHHHHhhcccCC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVS---LIFTEDVKPLIITPF---------CSNLQRFY------VATSRQLKRLESVSRSP 339 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~~------~~~~~~~~~l~~~~~~~ 339 (602)
.+ .+.....+...... ..+. .......... ...+.... ....+..+.++.++...
T Consensus 84 ---~~---tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 156 (556)
T PRK11819 84 ---EK---TVRENVEEGVAEVKAALDRFN-EIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP 156 (556)
T ss_pred ---CC---cHHHHHHHhhHHHHHHHHHHH-HHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc
Confidence 00 00000000000000 0000 0000000000 00000000 00112222233333322
Q ss_pred cccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEE
Q psy3001 340 IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVL 418 (602)
Q Consensus 340 ~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~ 418 (602)
.......+| ||||||++|||||+.+|++|||||||++||+.+..++.+.|++.. .|||+|||+++++.. ||+|+
T Consensus 157 -~~~~~~~LS--gGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i~ 231 (556)
T PRK11819 157 -WDAKVTKLS--GGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWIL 231 (556)
T ss_pred -ccCchhhcC--HHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEE
Confidence 334445677 699999999999999999999999999999999999999998863 599999999999988 99999
Q ss_pred EEeCceEE-eecChhHHhhcchhHHHHHHHh---------hhhhHHHH--------------HHHhhh--------hhHH
Q psy3001 419 VLDKGLVV-EFDSPSVLMKNKASIFYSMAKD---------AGLAWLAV--------------RLETVG--------NLIT 466 (602)
Q Consensus 419 ~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~---------~~~~~~~~--------------~~~~~~--------~~~~ 466 (602)
+|++|+++ ..|+++++.+..........+. ....|... +.+... ....
T Consensus 232 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (556)
T PRK11819 232 ELDRGRGIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKARQAKSKARLARYEELLSEEYQKRNETNE 311 (556)
T ss_pred EEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccccccCCCce
Confidence 99999986 5677776654322111000000 00001000 000000 0000
Q ss_pred H--HHH---HHHHHhc--------ccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCC
Q psy3001 467 F--SAA---LLAVLSK--------ETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533 (602)
Q Consensus 467 ~--~~~---~~~~~~~--------~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~ 533 (602)
+ ... ....+.. ....+.++||+|++||++||+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 312 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----- 386 (556)
T PRK11819 312 IFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET----- 386 (556)
T ss_pred eecCCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----
Confidence 0 000 0000000 111345789999999999999999999999999999999999999999541
Q ss_pred ChhhhhccceEecCCc-cccc-cchhcccCCCC-----CCcHHHHHHHHHHcCCCc-ccccccc
Q psy3001 534 GLHTLRSRLTIIPQDP-VLFS-GTLRLNLDPVG-----ESSDEAIWKALELAHLNT-FVSNLPA 589 (602)
Q Consensus 534 ~~~~lr~~i~~V~Qdp-~lf~-~Tv~~nl~~~~-----~~~~~~i~~al~~~~l~~-~~~~~~~ 589 (602)
.+++|+||++ .++. -||++|+.... ...+++..++++.+++.+ ..++.|.
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 444 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVG 444 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchh
Confidence 2699999997 5654 49999985321 112345678899999863 3344433
No 61
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=5.3e-46 Score=378.00 Aligned_cols=327 Identities=25% Similarity=0.336 Sum_probs=226.5
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~ 275 (602)
+.+..+|||+++.+| |++||+|+||||||||+++|.|+|+|++|+|.++|+++.--++. .++..||+|.|++...
T Consensus 16 ~~~And~V~l~v~~G-eIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv--- 91 (501)
T COG3845 16 GVVANDDVSLSVKKG-EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLV--- 91 (501)
T ss_pred CEEecCceeeeecCC-cEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccc---
Confidence 678899999999998 99999999999999999999999999999999999998866655 6788999999973211
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc------cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF------CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVT 349 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls 349 (602)
.+-++.+++.... ..+.........+..+ .++..-.....-..+|
T Consensus 92 --------------------------~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~---~yGl~vdp~~~V~dLs 142 (501)
T COG3845 92 --------------------------PTLTVAENIILGLEPSKGGLIDRRQARARIKELSE---RYGLPVDPDAKVADLS 142 (501)
T ss_pred --------------------------cccchhhhhhhcCccccccccCHHHHHHHHHHHHH---HhCCCCCccceeecCC
Confidence 0111111111111 0111111122222222 2222211222333455
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
.||||||.|-+||+++|++|||||||+.|-|...+.+++.++++. +|+|||+|||++.++.. |||+.||+.|+++.
T Consensus 143 --VG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 143 --VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred --cchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 699999999999999999999999999999999999999999875 58999999999999998 99999999999875
Q ss_pred ecC-hhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHh-cccccccceeeEEecceeEEEECCCCCCh
Q psy3001 428 FDS-PSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLS-KETLNAGLVGLSVSYAMQVGIVGRTGAGK 505 (602)
Q Consensus 428 ~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~Ge~v~ivG~nGsGK 505 (602)
... ..+.- .......+.......... +.........+......+.. .....+.++||++++||++||.|-.|.|.
T Consensus 221 t~~~~~~~t--~~ela~lMvG~~v~~~~~-~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ 297 (501)
T COG3845 221 TVDPVAETT--EEELAELMVGREVVLRVV-KPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQ 297 (501)
T ss_pred eecCCCCCC--HHHHHHHhcCCccccccc-cCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCH
Confidence 544 21210 011111111110000000 00000000000000000001 11233457999999999999999999999
Q ss_pred HHHHHHHHhccCCCCceEEECCeec-CCCChhhhh-ccceEecCCcc----ccccchhcccC
Q psy3001 506 SSLTLALFRIIEPADGTIIIDGVDI-RTLGLHTLR-SRLTIIPQDPV----LFSGTLRLNLD 561 (602)
Q Consensus 506 STLl~~L~g~~~~~~G~I~i~g~~i-~~~~~~~lr-~~i~~V~Qdp~----lf~~Tv~~nl~ 561 (602)
+.|+.+|+|+.+|.+|+|.++|+|+ ...+++++| ..++|||+|.. ...-|+.+|+.
T Consensus 298 ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~v 359 (501)
T COG3845 298 SELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLV 359 (501)
T ss_pred HHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhh
Confidence 9999999999999999999999997 666776654 47999999994 24568999974
No 62
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=5.7e-44 Score=393.79 Aligned_cols=346 Identities=19% Similarity=0.226 Sum_probs=216.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.+++ +..++|++|++.....
T Consensus 18 ~~il~~is~~i~~G-e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~v~Q~~~~~~~--- 82 (552)
T TIGR03719 18 KEILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGYLPQEPQLDPT--- 82 (552)
T ss_pred CeeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEEEeccCCCCCC---
Confidence 45799999999998 99999999999999999999999999999999875 2469999997431100
Q ss_pred CCceeEeeecccceeeeccccce---eeccccccccccccc---------chhHHHH------HHHHHHHHHHhhcccCC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSL---IFTEDVKPLIITPFC---------SNLQRFY------VATSRQLKRLESVSRSP 339 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~------~~~~~~~~~l~~~~~~~ 339 (602)
+ ++.....+....... .+. ........... ..+.+.. ....+..+.++.++...
T Consensus 83 ----~---tv~e~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 154 (552)
T TIGR03719 83 ----K---TVRENVEEGVAEIKDALDRFN-EISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP 154 (552)
T ss_pred ----C---cHHHHHHHhhHHHHHHHHHHH-HHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc
Confidence 0 000000000000000 000 00000000000 0000000 00011112222222221
Q ss_pred cccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEE
Q psy3001 340 IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVL 418 (602)
Q Consensus 340 ~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~ 418 (602)
.......+| ||||||++|||||+.+|++|||||||++||+.+..++.+.|++.. .|||+|||+++.+.. ||+++
T Consensus 155 -~~~~~~~LS--gGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~~~~d~v~ 229 (552)
T TIGR03719 155 -WDADVTKLS--GGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLDNVAGWIL 229 (552)
T ss_pred -ccCchhhcC--HHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEE
Confidence 233445677 699999999999999999999999999999999999999998763 599999999999988 99999
Q ss_pred EEeCceEE-eecChhHHhhcchhHHHHHH-------Hh--hhhhHHHH-------HHHhhhhhH-HH-------------
Q psy3001 419 VLDKGLVV-EFDSPSVLMKNKASIFYSMA-------KD--AGLAWLAV-------RLETVGNLI-TF------------- 467 (602)
Q Consensus 419 ~l~~G~i~-~~g~~~~l~~~~~~~~~~~~-------~~--~~~~~~~~-------~~~~~~~~~-~~------------- 467 (602)
+|++|+++ ..|+++++.+.......... +. ....|... ......... ..
T Consensus 230 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (552)
T TIGR03719 230 ELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKARQAKSKARLARYEELLSQEFQKRNETAE 309 (552)
T ss_pred EEECCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhcccccCCCce
Confidence 99999976 56887776543211110000 00 00001000 000000000 00
Q ss_pred ---HHHH---HHHHh--------cccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCC
Q psy3001 468 ---SAAL---LAVLS--------KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533 (602)
Q Consensus 468 ---~~~~---~~~~~--------~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~ 533 (602)
.... ...+. .....+.++||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++ +
T Consensus 310 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~---- 384 (552)
T TIGR03719 310 IYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T---- 384 (552)
T ss_pred eecCCCCCCCCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----
Confidence 0000 00000 011134568999999999999999999999999999999999999999954 1
Q ss_pred ChhhhhccceEecCCcc-ccc-cchhcccCCCC---C--CcHHHHHHHHHHcCCCc
Q psy3001 534 GLHTLRSRLTIIPQDPV-LFS-GTLRLNLDPVG---E--SSDEAIWKALELAHLNT 582 (602)
Q Consensus 534 ~~~~lr~~i~~V~Qdp~-lf~-~Tv~~nl~~~~---~--~~~~~i~~al~~~~l~~ 582 (602)
.+|+|+||++. ++. .|+++|+.... . ..+++..++++.+++.+
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~ 434 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG 434 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCCh
Confidence 26999999974 554 49999985321 1 12345677899999864
No 63
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.3e-45 Score=333.39 Aligned_cols=212 Identities=25% Similarity=0.416 Sum_probs=172.6
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC-ChHHHhhccceecccchhhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL-GLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~-~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
..-.++++|+++.+| |+++|+||||||||||+++|+|+.+|++|+|.++|.++... +...+|+++|+|+|+.
T Consensus 14 ~~~VLkgi~l~v~~G-evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~f------ 86 (240)
T COG1126 14 DKEVLKGISLSVEKG-EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQF------ 86 (240)
T ss_pred CeEEecCcceeEcCC-CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccc------
Confidence 345799999999998 99999999999999999999999999999999999876433 6888999999999962
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
.+|. .-+...| ....+....-....++..++.+.++.+++......++..||| |||
T Consensus 87 -----nLFP------------HlTvleN-----v~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSG--GQq 142 (240)
T COG1126 87 -----NLFP------------HLTVLEN-----VTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSG--GQQ 142 (240)
T ss_pred -----cccc------------cchHHHH-----HHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCc--HHH
Confidence 2221 1111111 000111111111223445566677788888888999999995 999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|||||||||+.+|+++++|||||+|||+...++.+.++++. +|.|.|+|||.+.++.+ ||||+.|++|++++.|++++
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~ 222 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEE 222 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 57999999999999999 99999999999999999999
Q ss_pred Hhhcch
Q psy3001 434 LMKNKA 439 (602)
Q Consensus 434 l~~~~~ 439 (602)
++.++.
T Consensus 223 ~f~~p~ 228 (240)
T COG1126 223 FFDNPK 228 (240)
T ss_pred HhcCCC
Confidence 988754
No 64
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=1.5e-44 Score=403.62 Aligned_cols=349 Identities=19% Similarity=0.225 Sum_probs=212.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| +++||+|+||||||||+++|+|+++|++|+|.++|.. .+++++|.+......
T Consensus 16 ~~il~~is~~i~~G-e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~~l~q~~~~~~~~-- 81 (635)
T PRK11147 16 APLLDNAELHIEDN-ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVARLQQDPPRNVEG-- 81 (635)
T ss_pred ceeEeCcEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEEEeccCCCCCCCC--
Confidence 45899999999998 9999999999999999999999999999999998731 133444432100000
Q ss_pred CCceeEeeecccceeeeccc-c---ce-eecccccccccccccchhHHH------HHHHHHHHHHHhhcccCCcccccCC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQ-V---SL-IFTEDVKPLIITPFCSNLQRF------YVATSRQLKRLESVSRSPIYSHFGE 346 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~ 346 (602)
..+-+............. . .. .......+++. ........ +....+..+.+..++.. ......
T Consensus 82 --~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~ 155 (635)
T PRK11147 82 --TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLN--ELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALS 155 (635)
T ss_pred --CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHH--HHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchh
Confidence 000000000000000000 0 00 00000000000 00000000 00111222223333332 133345
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| |||||||+|||||+.+|++|||||||++||+.+..++.+.|+++. .|||+|||+++++.. ||+|++|++|++
T Consensus 156 ~LS--gGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i~~L~~G~i 231 (635)
T PRK11147 156 SLS--GGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRIVDLDRGKL 231 (635)
T ss_pred hcC--HHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 566 699999999999999999999999999999999999999998873 599999999999988 999999999999
Q ss_pred Eee-cChhHHhhcchhHHHHH-------HHh--hhhhHHHH-----------H---HHhhh--h--------hHHH--HH
Q psy3001 426 VEF-DSPSVLMKNKASIFYSM-------AKD--AGLAWLAV-----------R---LETVG--N--------LITF--SA 469 (602)
Q Consensus 426 ~~~-g~~~~l~~~~~~~~~~~-------~~~--~~~~~~~~-----------~---~~~~~--~--------~~~~--~~ 469 (602)
+.+ |++.+++.......... .+. ....|... + .+... . ...+ ..
T Consensus 232 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (635)
T PRK11147 232 VSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRRERSERREVMGTAKMQVEE 311 (635)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhccccccCCceeEEeCC
Confidence 854 77776654322111000 000 00011100 0 00000 0 0000 00
Q ss_pred --H-HHHHHhc--------ccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh
Q psy3001 470 --A-LLAVLSK--------ETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 538 (602)
Q Consensus 470 --~-~~~~~~~--------~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l 538 (602)
. ....+.. ....+.++||+|++|+++||+|+||||||||+++|+|+++|++|+|.+ |.+
T Consensus 312 ~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~--------- 381 (635)
T PRK11147 312 ASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK--------- 381 (635)
T ss_pred CCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC---------
Confidence 0 0000000 011235689999999999999999999999999999999999999999 432
Q ss_pred hccceEecCCc-ccccc-chhcccCCCC-----CCcHHHHHHHHHHcCCC
Q psy3001 539 RSRLTIIPQDP-VLFSG-TLRLNLDPVG-----ESSDEAIWKALELAHLN 581 (602)
Q Consensus 539 r~~i~~V~Qdp-~lf~~-Tv~~nl~~~~-----~~~~~~i~~al~~~~l~ 581 (602)
-+|+|++|++ .++.. ||.+|+.... ....+++.++++.+++.
T Consensus 382 -~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~ 430 (635)
T PRK11147 382 -LEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFH 430 (635)
T ss_pred -cEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCC
Confidence 2699999987 45544 9999985321 11245678888888885
No 65
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-44 Score=396.47 Aligned_cols=349 Identities=21% Similarity=0.259 Sum_probs=217.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| +++||+|+||||||||+|+|+|+++|++|+|.++|.. .++|++|++....
T Consensus 14 ~~~l~~vs~~i~~G-e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~~~q~~~~~~---- 77 (638)
T PRK10636 14 RVLLDNATATINPG-QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAWVNQETPALP---- 77 (638)
T ss_pred ceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEEEecCCCCCC----
Confidence 45899999999998 9999999999999999999999999999999998742 3566666421000
Q ss_pred CCceeEeeecccceeeeccccceee---ccccccc---ccccccchhHHH------HHHHHHHHHHHhhcccC-Cccccc
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIF---TEDVKPL---IITPFCSNLQRF------YVATSRQLKRLESVSRS-PIYSHF 344 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~~~~~~ 344 (602)
...+.+ ..+....+ ...+... ............ +....+....+..++.. ......
T Consensus 78 -~~~~~~----------v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 78 -QPALEY----------VIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred -CCHHHH----------HHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 000000 00000000 0000000 000000000000 00111222333344443 233444
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
...+| ||||||++|||||+.+|++|||||||++||+.+..++.+.|++. +.|||+|||+++++.. ||+|++|++|
T Consensus 147 ~~~LS--gGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G 222 (638)
T PRK10636 147 VSDFS--GGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQ 222 (638)
T ss_pred hhhcC--HHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 55677 69999999999999999999999999999999999999999876 4699999999999988 9999999999
Q ss_pred eEEe-ecChhHHhhcchhHHH-------HHHHh--hhhhHHHH-------------HH---Hhhh--------hhHHHH-
Q psy3001 424 LVVE-FDSPSVLMKNKASIFY-------SMAKD--AGLAWLAV-------------RL---ETVG--------NLITFS- 468 (602)
Q Consensus 424 ~i~~-~g~~~~l~~~~~~~~~-------~~~~~--~~~~~~~~-------------~~---~~~~--------~~~~~~- 468 (602)
+++. .|+++.+......... ...+. ....|... +. +... ....+.
T Consensus 223 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~ 302 (638)
T PRK10636 223 SLFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSF 302 (638)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEec
Confidence 9975 4666655432111100 00000 00011100 00 0000 000000
Q ss_pred -HH---HHHHHh--------cccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh
Q psy3001 469 -AA---LLAVLS--------KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH 536 (602)
Q Consensus 469 -~~---~~~~~~--------~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~ 536 (602)
.. ....+. .....+.++||+|.+|+++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 303 ~~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------- 374 (638)
T PRK10636 303 RAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-------- 374 (638)
T ss_pred CCCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--------
Confidence 00 000000 0111235689999999999999999999999999999999999999999741
Q ss_pred hhhccceEecCCc--cccc-cchhcccC-CCCCCcHHHHHHHHHHcCCCc-cccccc
Q psy3001 537 TLRSRLTIIPQDP--VLFS-GTLRLNLD-PVGESSDEAIWKALELAHLNT-FVSNLP 588 (602)
Q Consensus 537 ~lr~~i~~V~Qdp--~lf~-~Tv~~nl~-~~~~~~~~~i~~al~~~~l~~-~~~~~~ 588 (602)
.+++|+||++ .+.. .|+.+++. ......++++.++|+.+++.. ...+.+
T Consensus 375 ---~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~ 428 (638)
T PRK10636 375 ---IKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEET 428 (638)
T ss_pred ---EEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCch
Confidence 2699999986 2332 37777653 222334567899999999853 444433
No 66
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=1.7e-43 Score=378.18 Aligned_cols=340 Identities=22% Similarity=0.287 Sum_probs=222.1
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
.+...|+|+++++.+| +++||||+||||||||+|+|+|...|++|+|...+. ..++|++|++...-.-
T Consensus 14 g~~~l~~~~~l~~~~G-~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 14 GDRPLLENVSLTLNPG-ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGYLSQEPPLDPEK 81 (530)
T ss_pred CCceeecCCcceeCCC-CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEEEeCCCCCcCCCc
Confidence 3567899999999998 999999999999999999999999999999998752 2589999974321100
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccc----------cccc---ccchhHHH------HHHHHHHHHHHhhcc
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL----------IITP---FCSNLQRF------YVATSRQLKRLESVS 336 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~~------~~~~~~~~~~l~~~~ 336 (602)
+++ ...+....++... .... ....++.. +....++...+..++
T Consensus 82 ----tv~--------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg 143 (530)
T COG0488 82 ----TVL--------------DYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLG 143 (530)
T ss_pred ----cHH--------------HHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCC
Confidence 000 0000000000000 0000 00000000 111122223333333
Q ss_pred cCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CC
Q psy3001 337 RSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SD 415 (602)
Q Consensus 337 ~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d 415 (602)
..+. ...-.++| ||||.|++|||||+.+|++|+|||||+|||.++..|+.+.|.++. | |+|+||||.+++.. |+
T Consensus 144 ~~~~-~~~~~~LS--GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t 218 (530)
T COG0488 144 FPDE-DRPVSSLS--GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVAT 218 (530)
T ss_pred CCcc-cCchhhcC--HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhh
Confidence 3322 23334556 699999999999999999999999999999999999999998654 4 99999999999999 99
Q ss_pred eEEEEeCceEEee-cChhHHhhcchhHHHHHHH---------hhhhhHHHHH----------------HHhhhh------
Q psy3001 416 RVLVLDKGLVVEF-DSPSVLMKNKASIFYSMAK---------DAGLAWLAVR----------------LETVGN------ 463 (602)
Q Consensus 416 ~i~~l~~G~i~~~-g~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~----------------~~~~~~------ 463 (602)
+|+.++.|++..+ |+++..++.+........+ .....|.... .+....
T Consensus 219 ~I~~ld~g~l~~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~ 298 (530)
T COG0488 219 HILELDRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEER 298 (530)
T ss_pred heEEecCCceeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcc
Confidence 9999999999766 4555555432211111000 0001111100 000000
Q ss_pred ------hH--HHH--------------HHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCc
Q psy3001 464 ------LI--TFS--------------AALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG 521 (602)
Q Consensus 464 ------~~--~~~--------------~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G 521 (602)
.. .+. .....+. .......+++|.+.+|++|||+||||+|||||+|+|+|...|.+|
T Consensus 299 ~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~-~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G 377 (530)
T COG0488 299 PVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD-GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377 (530)
T ss_pred cccccccceeeccCCcccCCCeeEEEeccccccC-CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence 00 000 0000000 001223468999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCChhhhhccceEecCCc-cccc-cchhcccCCCC-CCcHHHHHHHHHHcCCCc
Q psy3001 522 TIIIDGVDIRTLGLHTLRSRLTIIPQDP-VLFS-GTLRLNLDPVG-ESSDEAIWKALELAHLNT 582 (602)
Q Consensus 522 ~I~i~g~~i~~~~~~~lr~~i~~V~Qdp-~lf~-~Tv~~nl~~~~-~~~~~~i~~al~~~~l~~ 582 (602)
+|.++- .-++||.+|+. .++. .|+.+++.... ...+.++...|..+++..
T Consensus 378 ~v~~g~-----------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 378 TVKVGE-----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred eEEeCC-----------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh
Confidence 999874 23799999998 4443 37888886443 334788999999999875
No 67
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=3.9e-44 Score=393.44 Aligned_cols=336 Identities=18% Similarity=0.226 Sum_probs=216.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEE-----------ECCeecCCCChHH--Hhhcccee
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTII-----------IDGVDIRTLGLHT--LRSRLTII 265 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~-----------i~g~~~~~~~~~~--~~~~i~~v 265 (602)
..+++++ ...+| +++||+|+||||||||+|+|+|+++|++|+|. ++|.++.++.... .+..+++.
T Consensus 88 ~~L~~l~-~i~~G-ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 88 FKLYGLP-IPKEG-KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred eeEecCC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 5788888 67676 99999999999999999999999999999997 8888775432111 11235555
Q ss_pred cccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccC
Q psy3001 266 PQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFG 345 (602)
Q Consensus 266 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 345 (602)
+|..... |.++ ..++.+.+ . ......+..+.++.++.........
T Consensus 166 ~q~~~~~-------p~~~-------------------~~tv~e~l--------~-~~~~~~~~~~~l~~l~l~~~~~~~~ 210 (590)
T PRK13409 166 PQYVDLI-------PKVF-------------------KGKVRELL--------K-KVDERGKLDEVVERLGLENILDRDI 210 (590)
T ss_pred ccchhhh-------hhhh-------------------cchHHHHH--------H-hhhHHHHHHHHHHHcCCchhhcCCh
Confidence 6632110 1111 11111110 0 0011112223333444444445555
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCc-
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG- 423 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G- 423 (602)
..|| ||||||++|||||+++|++|+|||||++||+.+..++.+.++++.+++|+|+|||+++.+.. ||++++|+++
T Consensus 211 ~~LS--gGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~ 288 (590)
T PRK13409 211 SELS--GGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP 288 (590)
T ss_pred hhCC--HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 6777 69999999999999999999999999999999999999999987558999999999999988 9999999863
Q ss_pred -eEEeecChhHHhhcchhHHHH-HHHhhhhhHH----HHHH-Hhh----hh-hHHHHHHHHHHHhcccccccceeeEEec
Q psy3001 424 -LVVEFDSPSVLMKNKASIFYS-MAKDAGLAWL----AVRL-ETV----GN-LITFSAALLAVLSKETLNAGLVGLSVSY 491 (602)
Q Consensus 424 -~i~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~----~~~~-~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 491 (602)
..-....+...... ...+.. .......... .... .+. .. .+.+......+ ....+..++|++++
T Consensus 289 g~~g~~~~~~~~~~~-i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~---~~~~l~~~s~~i~~ 364 (590)
T PRK13409 289 GAYGVVSKPKGVRVG-INEYLKGYLPEENMRIRPEPIEFEERPPRDESERETLVEYPDLTKKL---GDFSLEVEGGEIYE 364 (590)
T ss_pred cccceecchhHHHHh-HHHHHHhcchhhhhhccccCcceecCCCccccCCceEEEEcceEEEE---CCEEEEecceEECC
Confidence 11000011111000 000100 0000000000 0000 000 00 00011110001 11124568899999
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhcccCCCC-CC-cH
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRLNLDPVG-ES-SD 568 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~nl~~~~-~~-~~ 568 (602)
||++||+|+||||||||+++|+|+++|++|+|.++ .+++|+||++.+ +..||++|+.... .. ..
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~ 431 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTVEDLLRSITDDLGSS 431 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCCCCCcHHHHHHHHhhhcChH
Confidence 99999999999999999999999999999999985 159999999865 4569999986321 11 23
Q ss_pred HHHHHHHHHcCCCccccccccC
Q psy3001 569 EAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 569 ~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+.+.++++.+++.+..++.|..
T Consensus 432 ~~~~~~L~~l~l~~~~~~~~~~ 453 (590)
T PRK13409 432 YYKSEIIKPLQLERLLDKNVKD 453 (590)
T ss_pred HHHHHHHHHCCCHHHHhCCccc
Confidence 4578899999998766655543
No 68
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.8e-43 Score=335.81 Aligned_cols=211 Identities=30% Similarity=0.409 Sum_probs=173.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|||+++++| ++.||+|.||||||||++++.++..|++|+|.+||+++..++.. ..|++||+++|++..+-
T Consensus 19 ~~al~~vsL~I~~G-eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLs- 96 (339)
T COG1135 19 VTALDDVSLEIPKG-EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS- 96 (339)
T ss_pred eeeeccceEEEcCC-cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccc-
Confidence 56899999999998 99999999999999999999999999999999999998887655 56789999999732110
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
..++.+++..+..-.-........+..+.++.+++......++.+||| ||
T Consensus 97 ----------------------------srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSG--GQ 146 (339)
T COG1135 97 ----------------------------SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSG--GQ 146 (339)
T ss_pred ----------------------------cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCc--ch
Confidence 111122221111100011223344556667788888888999999995 99
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||+|||||+.+|+||+.|||||+|||+|.+.|.+.|++..+ |.||++|||.++.++. |||+.||++|++++.|+.
T Consensus 147 KQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 147 KQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred hhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccH
Confidence 9999999999999999999999999999999999999998754 7999999999999999 999999999999999999
Q ss_pred hHHhhcchh
Q psy3001 432 SVLMKNKAS 440 (602)
Q Consensus 432 ~~l~~~~~~ 440 (602)
.+++.++..
T Consensus 227 ~~vF~~Pk~ 235 (339)
T COG1135 227 SEVFANPKH 235 (339)
T ss_pred HHhhcCcch
Confidence 999987644
No 69
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.1e-42 Score=388.57 Aligned_cols=360 Identities=18% Similarity=0.193 Sum_probs=214.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc---CCCCceEEECCeecCCC--Ch------------HHHhhc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII---EPADGTIIIDGVDIRTL--GL------------HTLRSR 261 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~---~~~~G~I~i~g~~~~~~--~~------------~~~~~~ 261 (602)
..|+|+||++.+| +++||||+||||||||+++|+|.. .|.+|+|.+.++++... +. ..+++.
T Consensus 191 ~ll~~isl~i~~G-e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~ 269 (718)
T PLN03073 191 DLIVDASVTLAFG-RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEE 269 (718)
T ss_pred EEEECCEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 3566666666666 899999999999999999999964 58899998755543211 11 113455
Q ss_pred cceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccc--hhHHHHHHHHHHHHHHhhcccC-
Q psy3001 262 LTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS--NLQRFYVATSRQLKRLESVSRS- 338 (602)
Q Consensus 262 i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~- 338 (602)
+++++|++..+..... ...+ .....-...+.+...+ ..... .....+....+....+..++..
T Consensus 270 ~~~~~q~~~l~~~~~~--~~~~-----------~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~ 335 (718)
T PLN03073 270 AQLVAQQRELEFETET--GKGK-----------GANKDGVDKDAVSQRL-EEIYKRLELIDAYTAEARAASILAGLSFTP 335 (718)
T ss_pred HHHHHHHHHhhhcccc--cccc-----------cccccccchHHHHHHH-HHHHHHHHhcCcchHHHHHHHHHHHCCCCh
Confidence 7788886543221000 0000 0000000000000000 00000 0000011222333333344432
Q ss_pred CcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeE
Q psy3001 339 PIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRV 417 (602)
Q Consensus 339 ~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i 417 (602)
........++| ||||||++|||||+.+|++|||||||++||+.+..++.+.|+++ +.|+|+|||+++++.. ||+|
T Consensus 336 ~~~~~~~~~LS--gG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 336 EMQVKATKTFS--GGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred HHHhCchhhCC--HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEE
Confidence 12233345677 69999999999999999999999999999999999999999886 6799999999999988 9999
Q ss_pred EEEeCceEEe-ecChhHHhhcchhH-------HHHHHHhh-hh-hHHH----------------HHHHhhh--------h
Q psy3001 418 LVLDKGLVVE-FDSPSVLMKNKASI-------FYSMAKDA-GL-AWLA----------------VRLETVG--------N 463 (602)
Q Consensus 418 ~~l~~G~i~~-~g~~~~l~~~~~~~-------~~~~~~~~-~~-~~~~----------------~~~~~~~--------~ 463 (602)
++|++|++.. .|+++.+....... |....+.. .. .+.. ...+... .
T Consensus 412 ~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~~~~~~~~~ 491 (718)
T PLN03073 412 LHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDP 491 (718)
T ss_pred EEEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhhhhccccCC
Confidence 9999999974 45555443221110 00000000 00 0000 0000000 0
Q ss_pred hH--HHHH----HHHHHHh---------cccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCe
Q psy3001 464 LI--TFSA----ALLAVLS---------KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 528 (602)
Q Consensus 464 ~~--~~~~----~~~~~~~---------~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~ 528 (602)
.. .+.. .....+. .....+.++||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+++
T Consensus 492 ~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~- 570 (718)
T PLN03073 492 DYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA- 570 (718)
T ss_pred CceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-
Confidence 00 0000 0000000 011234578999999999999999999999999999999999999999876
Q ss_pred ecCCCChhhhhccceEecCCccccccchhcccC-----CCCCCcHHHHHHHHHHcCCCc-ccccccc
Q psy3001 529 DIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD-----PVGESSDEAIWKALELAHLNT-FVSNLPA 589 (602)
Q Consensus 529 ~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~-----~~~~~~~~~i~~al~~~~l~~-~~~~~~~ 589 (602)
+.+|+|+||++.. .-++..|.. ......++++.++|+.+++.+ ...+.|.
T Consensus 571 ----------~~~igyv~Q~~~~-~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~ 626 (718)
T PLN03073 571 ----------KVRMAVFSQHHVD-GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY 626 (718)
T ss_pred ----------ceeEEEEeccccc-cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCcc
Confidence 3479999999732 113333311 112345678999999999974 4444433
No 70
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-42 Score=322.22 Aligned_cols=215 Identities=28% Similarity=0.451 Sum_probs=174.3
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+|+++.+| |+++++|||||||||++|+|.++++|++|+|+++|.++++++..++|++||||-|....
T Consensus 13 ~~~av~~v~l~I~~g-ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigL----- 86 (309)
T COG1125 13 NKKAVDDVNLTIEEG-EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGL----- 86 (309)
T ss_pred CceeeeeeeEEecCC-eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhccc-----
Confidence 456899999999998 99999999999999999999999999999999999999999999999999999996322
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccc-cccchhHHHHHHHHHHHHHHhhcccCC--cccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PFCSNLQRFYVATSRQLKRLESVSRSP--IYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~lsgs~G 353 (602)
| .+.++.+++.. +....+.+ .....+..+.+..+++.| +..++++.||| |
T Consensus 87 ------F------------------Ph~Tv~eNIa~VP~L~~w~k-~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSG--G 139 (309)
T COG1125 87 ------F------------------PHLTVAENIATVPKLLGWDK-ERIKKRADELLDLVGLDPSEYADRYPHELSG--G 139 (309)
T ss_pred ------C------------------CCccHHHHHHhhhhhcCCCH-HHHHHHHHHHHHHhCCCHHHHhhcCchhcCc--c
Confidence 1 11122221110 01111111 112233344444566654 67889999995 9
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|+|||.+||||+.+|+++++|||+++|||-++..+++.+.++.+ ++|+|+||||+++... +|||.+|++|+++.+++
T Consensus 140 QQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 140 QQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred hhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCC
Confidence 99999999999999999999999999999999999998888654 6999999999999988 99999999999999999
Q ss_pred hhHHhhcchhHHHH
Q psy3001 431 PSVLMKNKASIFYS 444 (602)
Q Consensus 431 ~~~l~~~~~~~~~~ 444 (602)
|++++.++...|..
T Consensus 220 P~~il~~Pan~FV~ 233 (309)
T COG1125 220 PDEILANPANDFVE 233 (309)
T ss_pred HHHHHhCccHHHHH
Confidence 99999887665543
No 71
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=8.5e-41 Score=339.15 Aligned_cols=255 Identities=23% Similarity=0.333 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-cC---------CCCCCCCCCCCcEEEeeeEEEEecCCceEEE
Q psy3001 148 TQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWV-ND---------KKPKDEWPEKGEVEFKDYKVRYREGLELVGI 217 (602)
Q Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~i~~~~vs~~~~~~~e~~~l 217 (602)
..|+...+..|..+..+..+.+|+.+++.+.+..... .- +......|...+..++++||+..+| +.+||
T Consensus 289 LaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G-~~lgI 367 (580)
T COG4618 289 LAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAG-EALGI 367 (580)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCC-ceEEE
Confidence 3466777788889999999999999998754432211 00 0001112444578999999999998 99999
Q ss_pred EeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccc
Q psy3001 218 VGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQ 297 (602)
Q Consensus 218 vG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (602)
|||||||||||.|+|.|..+|.+|.|.+||-+++.++.+.+-++|||+||+ ..+| .
T Consensus 368 IGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQd-----------VeLF-------------~ 423 (580)
T COG4618 368 IGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQD-----------VELF-------------D 423 (580)
T ss_pred ECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCccc-----------ceec-------------C
Confidence 999999999999999999999999999999999999999999999999998 3444 3
Q ss_pred cceeec-----cccc-c-cccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCe
Q psy3001 298 VSLIFT-----EDVK-P-LIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKI 370 (602)
Q Consensus 298 ~~~~~~-----~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~i 370 (602)
+++..| ++.. + .+.....+..++.+...+.++ +..+++.|..|| |||||||+|||||+.+|.+
T Consensus 424 GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GY--------dT~iG~~G~~LS--gGQRQRIaLARAlYG~P~l 493 (580)
T COG4618 424 GTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGY--------DTRIGEGGATLS--GGQRQRIALARALYGDPFL 493 (580)
T ss_pred CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCc--------cCccCCCCCCCC--chHHHHHHHHHHHcCCCcE
Confidence 333322 1110 0 000011111222222222222 334677788888 5999999999999999999
Q ss_pred EEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhc
Q psy3001 371 LILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 371 liLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
++||||-|+||.+.|.-+.+.|...+ +|+|+|+||||++.+..+|+|++|++|++..+|+.+|++++
T Consensus 494 vVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 494 VVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred EEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999998864 57999999999999999999999999999999999888764
No 72
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=9.3e-41 Score=322.05 Aligned_cols=213 Identities=26% Similarity=0.395 Sum_probs=165.1
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+||++++| ++++|+||||||||||+|+|+|+++|.+|+|.+||+++.+++..++.+.++||||.+..-+-+.
T Consensus 14 ~~~il~~ls~~i~~G-~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~t 92 (258)
T COG1120 14 GKPILDDLSFSIPKG-EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLT 92 (258)
T ss_pred CeeEEecceEEecCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcE
Confidence 567899999999998 9999999999999999999999999999999999999999999999999999999753321100
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
..+-+. +...+ -... ....-.+... ...+.++..+...+..+.-..|| |||||
T Consensus 93 V~d~V~------------~GR~p------~~~~----~~~~~~~D~~---~v~~aL~~~~~~~la~r~~~~LS--GGerQ 145 (258)
T COG1120 93 VYELVL------------LGRYP------HLGL----FGRPSKEDEE---IVEEALELLGLEHLADRPVDELS--GGERQ 145 (258)
T ss_pred EeehHh------------hcCCc------cccc----ccCCCHhHHH---HHHHHHHHhCcHHHhcCcccccC--hhHHH
Confidence 000000 00000 0000 0000011111 22233334455555556666777 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|+.|||||+++|++|+|||||++||.....++++.++++. +++|+|++.||++.... ||++++|++|+++..|++++
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcch
Confidence 9999999999999999999999999999999999999975 36999999999999887 99999999999999999998
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
++..
T Consensus 226 vlT~ 229 (258)
T COG1120 226 VLTE 229 (258)
T ss_pred hcCH
Confidence 8764
No 73
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-40 Score=310.37 Aligned_cols=213 Identities=27% Similarity=0.422 Sum_probs=167.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC-ChHHHhhccceecccchhhhhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL-GLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~-~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
..++||||++.+| |++||+|+||||||||.++|+|+.+|++|+|.++|.+.... .....++.+.+|+|+|..-+.
T Consensus 21 ~~l~~VS~~i~~G-e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn--- 96 (252)
T COG1124 21 HALNNVSLEIERG-ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN--- 96 (252)
T ss_pred hhhcceeEEecCC-CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccC---
Confidence 4799999999998 99999999999999999999999999999999999776554 344678899999999754332
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQR 355 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~ 355 (602)
|. .++...+..+.. ....+. ..+..+.++.+++.+ +...++..+| |||+
T Consensus 97 --P~----------------------~tv~~~l~Epl~~~~~~~~---~~~i~~~L~~VgL~~~~l~R~P~eLS--GGQ~ 147 (252)
T COG1124 97 --PR----------------------RTVGRILSEPLRPHGLSKS---QQRIAELLDQVGLPPSFLDRRPHELS--GGQR 147 (252)
T ss_pred --cc----------------------hhHHHHHhhhhccCCccHH---HHHHHHHHHHcCCCHHHHhcCchhcC--hhHH
Confidence 11 111111111111 011111 122444455666543 6778889999 5999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
|||||||||..+|++||||||||+||......+++.+.+.++ +.|.|+||||+..+.. ||||+||++|+++|.++..
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechh
Confidence 999999999999999999999999999999999999988765 4699999999999999 9999999999999999999
Q ss_pred HHhhcchhHHHH
Q psy3001 433 VLMKNKASIFYS 444 (602)
Q Consensus 433 ~l~~~~~~~~~~ 444 (602)
++.......|..
T Consensus 228 ~l~~~~~h~ytr 239 (252)
T COG1124 228 ELLSHPSHPYTR 239 (252)
T ss_pred hhhcCCccHHHH
Confidence 987764444443
No 74
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.9e-39 Score=301.58 Aligned_cols=214 Identities=27% Similarity=0.426 Sum_probs=170.4
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATI 272 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~ 272 (602)
.++..++|+++++++| |+++|+|+||||||||+|+|.|+.+|++|+|.++|.++..++.. ++|+++|+++|.-
T Consensus 19 G~~~Ild~v~l~V~~G-ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g--- 94 (263)
T COG1127 19 GDRVILDGVDLDVPRG-EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG--- 94 (263)
T ss_pred CCEEEecCceeeecCC-cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecc---
Confidence 3578899999999998 99999999999999999999999999999999999999998765 5688999999962
Q ss_pred hhhccCCceeEeeecccceeeeccccceeeccccccccccccc--chhHHHHHHHHHHHHHHhhcccCCc-ccccCCcCC
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC--SNLQRFYVATSRQLKRLESVSRSPI-YSHFGETVT 349 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~ls 349 (602)
.+| ..-++.+++..+.. ..+.+.. ...-....++.+++.+. ...++..||
T Consensus 95 --------ALF------------------ssltV~eNVafplre~~~lp~~~-i~~lv~~KL~~VGL~~~~~~~~PsELS 147 (263)
T COG1127 95 --------ALF------------------SSLTVFENVAFPLREHTKLPESL-IRELVLMKLELVGLRGAAADLYPSELS 147 (263)
T ss_pred --------ccc------------------cccchhHhhheehHhhccCCHHH-HHHHHHHHHHhcCCChhhhhhCchhhc
Confidence 222 11111222111111 1111111 11122334556777665 677888999
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
| |++.|+|||||++.||+++++||||++|||.+...+.+.++++.+ +.|+++||||++.+.. |||++++.+|+|+
T Consensus 148 G--GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 148 G--GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225 (263)
T ss_pred c--hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence 4 999999999999999999999999999999999999999988754 6899999999999998 9999999999999
Q ss_pred eecChhHHhhcchhHH
Q psy3001 427 EFDSPSVLMKNKASIF 442 (602)
Q Consensus 427 ~~g~~~~l~~~~~~~~ 442 (602)
..|+++++.+..+++.
T Consensus 226 ~~Gt~~el~~sd~P~v 241 (263)
T COG1127 226 AEGTPEELLASDDPWV 241 (263)
T ss_pred EeCCHHHHHhCCCHHH
Confidence 9999999988655443
No 75
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.1e-39 Score=305.41 Aligned_cols=196 Identities=25% Similarity=0.332 Sum_probs=152.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH----Hhhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT----LRSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~----~~~~i~~v~Q~~~~~~ 273 (602)
...++++||++.+| |+++|+||||||||||+++|.|+..|++|.|.++|.++..++... .+++||+|+|+.
T Consensus 18 ~~~L~~v~l~i~~G-e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~---- 92 (226)
T COG1136 18 VEALKDVNLEIEAG-EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNF---- 92 (226)
T ss_pred eEecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccC----
Confidence 45799999999998 999999999999999999999999999999999999999987543 457899999962
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCccc-ccCCcCCCC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYS-HFGETVTGN 351 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~lsgs 351 (602)
.+..+-++.+++..+. ....... ....+....++.+++.+... +.+..||
T Consensus 93 -------------------------nLl~~ltv~ENv~lpl~~~~~~~~-~~~~~~~~l~~~lgl~~~~~~~~p~eLS-- 144 (226)
T COG1136 93 -------------------------NLLPDLTVLENVELPLLIAGKSAG-RRKRAAEELLEVLGLEDRLLKKKPSELS-- 144 (226)
T ss_pred -------------------------CCCCCCCHHHHHHhHHHHcCCChh-HHHHHHHHHHHhcCChhhhccCCchhcC--
Confidence 1122222222221110 0000000 11222223333445553334 7788899
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEE
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVV 426 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~ 426 (602)
|||||||||||||+.+|++++.||||.+||.++.+.+++.+++.. .|+|+|+||||......|||++.+.+|++.
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 599999999999999999999999999999999999999999874 378999999999999999999999999953
No 76
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-39 Score=323.66 Aligned_cols=210 Identities=26% Similarity=0.361 Sum_probs=168.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++++|+++.+| |+++|+||||||||||+++|+|+.+|++|+|.++|.+++++++.. +.|++|+|+..
T Consensus 18 ~l~~i~l~i~~G-ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iamVFQ~yA--------- 85 (338)
T COG3839 18 VLKDVNLDIEDG-EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAMVFQNYA--------- 85 (338)
T ss_pred eeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEEEeCCcc---------
Confidence 899999999998 999999999999999999999999999999999999999998875 79999999621
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLIC 359 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~ 359 (602)
+ ...-++++++.++....-........+..+..+.+...++....+..|| ||||||||
T Consensus 86 --L------------------yPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LS--GGQrQRVA 143 (338)
T COG3839 86 --L------------------YPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLS--GGQRQRVA 143 (338)
T ss_pred --c------------------cCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCC--hhhHHHHH
Confidence 1 1222233332222111100001112223333446667777888899999 59999999
Q ss_pred HHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhh
Q psy3001 360 LARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 360 lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
|||||+++|++++||||.|+||+..+..+...++++.+ +.|+|+||||..++.. +|||.+|++|+|.+.|++.+++.
T Consensus 144 laRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 144 LARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999888888654 5899999999999988 99999999999999999999998
Q ss_pred cchhHHH
Q psy3001 437 NKASIFY 443 (602)
Q Consensus 437 ~~~~~~~ 443 (602)
++...+.
T Consensus 224 ~P~n~fV 230 (338)
T COG3839 224 RPANLFV 230 (338)
T ss_pred Cccchhh
Confidence 7665443
No 77
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-39 Score=302.66 Aligned_cols=191 Identities=26% Similarity=0.372 Sum_probs=152.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+|+++.+| |+++|+||||||||||+|+|+|+.+|++|+|.++|.++..- ...++||+|+...+
T Consensus 16 ~~vl~~i~L~v~~G-EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~vFQ~~~Ll----- 84 (248)
T COG1116 16 VEVLEDINLSVEKG-EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGYVFQEDALL----- 84 (248)
T ss_pred eEEeccceeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEEEeccCccc-----
Confidence 56899999999998 99999999999999999999999999999999999987443 35789999974321
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
||.. +.+++.......-....++..+..+.++.+++......++..+| ||||||
T Consensus 85 --PW~T----------------------v~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLS--GGMrQR 138 (248)
T COG1116 85 --PWLT----------------------VLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLS--GGMRQR 138 (248)
T ss_pred --chhh----------------------HHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccC--hHHHHH
Confidence 3322 11121111110000111122345566678888888899999999 599999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC--ceE
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK--GLV 425 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~--G~i 425 (602)
|||||||+.+|++|+||||+++||+.|+..+++.+.++. .++||++|||+.++... +|||++|.+ |+|
T Consensus 139 VaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 139 VAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 999999999999999999999999999999999887754 35999999999999887 999999998 445
No 78
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.3e-38 Score=307.52 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=170.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC-CCChHHHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR-TLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~-~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++++||.+.+| ++++|+|+||||||||+++++|+++|++|+|.++|.++. ..+...+|+.+|+|+|+|..+++..
T Consensus 17 ~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDVSLEIEKG-ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 56899999999988 999999999999999999999999999999999999988 4788899999999999987765321
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccc-cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
. +.+-+.+ ......... ....+..+.++.++......+....||| |||
T Consensus 96 t----------------------------V~~evafg~~n~g~~~~-e~~~rv~~~l~~vgl~~~~~r~p~~LSG--Gqk 144 (235)
T COG1122 96 T----------------------------VEDEVAFGLENLGLPRE-EIEERVAEALELVGLEELLDRPPFNLSG--GQK 144 (235)
T ss_pred c----------------------------HHHHHhhchhhcCCCHH-HHHHHHHHHHHHcCchhhccCCccccCC--cce
Confidence 1 1100000 000011111 1233444555567777677788888994 999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
||+|||.+|+.+|++||||||||+||+...+.+.+.++++.+ ++|+|++|||++.+.. |||+++|++|+++..|++.
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~ 224 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPA 224 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHH
Confidence 999999999999999999999999999999999999999754 4899999999999998 9999999999999999998
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
+++++
T Consensus 225 ~i~~~ 229 (235)
T COG1122 225 EIFND 229 (235)
T ss_pred HHhhh
Confidence 88765
No 79
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.1e-39 Score=292.60 Aligned_cols=211 Identities=23% Similarity=0.350 Sum_probs=156.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCC-----ceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPAD-----GTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~-----G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
-.++|||+.++++ +++|++||||||||||++++.++.+... |+|.++|+++.+ +++.++|+++|+|+|.|.
T Consensus 21 ~aL~~i~l~i~~~-~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn- 98 (253)
T COG1117 21 HALKDINLDIPKN-KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN- 98 (253)
T ss_pred hhhccCceeccCC-ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC-
Confidence 3566666666666 8999999999999999999999998764 999999999976 468899999999999753
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg 350 (602)
| | ..++..|-.. ..-.... ...+++..+...+....++.+. ..+...+..||
T Consensus 99 --------P--F-------------p~SIydNVay-G~r~~g~~~~~ldeiVe~sLk~AaLWdEVK--DrL~~sa~~LS- 151 (253)
T COG1117 99 --------P--F-------------PMSIYDNVAY-GLRLHGIKDKELDEIVESSLKKAALWDEVK--DRLHKSALGLS- 151 (253)
T ss_pred --------C--C-------------CchHHHHHHH-hHHhhccchHHHHHHHHHHHHHhHhHHHhH--HHhhCCccCCC-
Confidence 2 2 1111111000 0000000 0111122221111111121110 11333444566
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||+||+||||||+-+|+||+||||||+|||.+...|.+.+.+++++-|||+|||.+....+ +|+..++..|+++|+|
T Consensus 152 -GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g 230 (253)
T COG1117 152 -GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230 (253)
T ss_pred -hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEc
Confidence 69999999999999999999999999999999999999999999988999999999999988 9999999999999999
Q ss_pred ChhHHhhcch
Q psy3001 430 SPSVLMKNKA 439 (602)
Q Consensus 430 ~~~~l~~~~~ 439 (602)
+.++++.++.
T Consensus 231 ~T~~iF~~P~ 240 (253)
T COG1117 231 PTDKIFTNPK 240 (253)
T ss_pred CHHhhhcCcc
Confidence 9999987754
No 80
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=2.3e-38 Score=325.01 Aligned_cols=209 Identities=25% Similarity=0.381 Sum_probs=164.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..++..+ +|+.|+|++|++.
T Consensus 18 ~~~L~~vsl~i~~G-ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~---- 92 (343)
T TIGR02314 18 IQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFN---- 92 (343)
T ss_pred eEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcc----
Confidence 35899999999998 999999999999999999999999999999999999998887654 4789999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. ..++.+++..+. ...... .....+..+.++.++..+........+| ||
T Consensus 93 -------l~~------------------~~tv~eni~~~~~~~~~~~-~~~~~~v~e~l~~vgL~~~~~~~~~~LS--gG 144 (343)
T TIGR02314 93 -------LLS------------------SRTVFGNVALPLELDNTPK-DEIKRKVTELLALVGLGDKHDSYPSNLS--GG 144 (343)
T ss_pred -------ccc------------------cCcHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCchhhhCChhhCC--HH
Confidence 110 011111111000 000000 0111223344445566555666777888 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||++|||||+.+|++|+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 145 qkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 145 QKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224 (343)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999998753 7899999999999988 99999999999999999
Q ss_pred hhHHhhcch
Q psy3001 431 PSVLMKNKA 439 (602)
Q Consensus 431 ~~~l~~~~~ 439 (602)
+++++..+.
T Consensus 225 ~~~v~~~p~ 233 (343)
T TIGR02314 225 VSEIFSHPK 233 (343)
T ss_pred HHHHHcCCC
Confidence 999876543
No 81
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-38 Score=293.76 Aligned_cols=208 Identities=28% Similarity=0.415 Sum_probs=165.7
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC---hHHHhhccceecccchhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~---~~~~~~~i~~v~Q~~~~~ 272 (602)
.+...++|||+.+++| |.++|+|+||||||||+++|.|+.+|++|+|.++|.++..++ ...+|++||+++|.+...
T Consensus 15 ~~~~aL~~Vnl~I~~G-E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 15 GGHQALKDVNLEINQG-EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred CCceeeeeEeEEeCCC-cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence 4677899999999998 999999999999999999999999999999999999998887 446778999999973321
Q ss_pred hhhccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHH-----HHHHHHHHHHHhhcccCCccccc
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRF-----YVATSRQLKRLESVSRSPIYSHF 344 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~ 344 (602)
- ..++..++... ....++.. ......+++.++.++..+.....
T Consensus 94 ~-----------------------------r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr 144 (258)
T COG3638 94 P-----------------------------RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR 144 (258)
T ss_pred c-----------------------------ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH
Confidence 0 00110110000 00011110 11223445566666666666667
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEe
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
..+|| |||+|||+|||||+++|++++-|||+++|||.+.+.+++.|++.. .|.|+|+.-|+++.+.+ ||||+-|+
T Consensus 145 a~~LS--GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~ 222 (258)
T COG3638 145 ASTLS--GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK 222 (258)
T ss_pred hccCC--cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEec
Confidence 77888 599999999999999999999999999999999999999999864 47999999999999998 99999999
Q ss_pred CceEEeecChhHHh
Q psy3001 422 KGLVVEFDSPSVLM 435 (602)
Q Consensus 422 ~G~i~~~g~~~~l~ 435 (602)
+|+|+..|++.++-
T Consensus 223 ~G~ivfDg~~~el~ 236 (258)
T COG3638 223 AGRIVFDGPASELT 236 (258)
T ss_pred CCcEEEeCChhhhh
Confidence 99999999998853
No 82
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=1.2e-36 Score=340.33 Aligned_cols=231 Identities=19% Similarity=0.199 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-------ccC-CC-------------CCCCCCCCCcEEEeee
Q psy3001 146 KITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW-------VND-KK-------------PKDEWPEKGEVEFKDY 204 (602)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~-------~~~-~~-------------~~~~~~~~~~i~~~~v 204 (602)
.+..|+..+......+++...+.+|+.++++.+++... ... .. ........+.++++|+
T Consensus 378 ~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv 457 (659)
T TIGR00954 378 KAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENI 457 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEee
Confidence 34566777888899999999999999999864322110 000 00 0000001234556666
Q ss_pred EEEE--------------ecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccch
Q psy3001 205 KVRY--------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 205 s~~~--------------~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~ 270 (602)
++.| ++| ++++|+|+||||||||+++|+|+++|++|+|.+++ ++.++++||++
T Consensus 458 ~~~~~~~~~il~~isl~i~~G-e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~- 524 (659)
T TIGR00954 458 PLVTPNGDVLIESLSFEVPSG-NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRP- 524 (659)
T ss_pred EEECCCCCeeeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCC-
Confidence 6655 334 88999999999999999999999999999998864 56799999984
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeeccccccccc-ccccchhHHHHHHHHHHHHHHhhcccCCc---------
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII-TPFCSNLQRFYVATSRQLKRLESVSRSPI--------- 340 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 340 (602)
.++ .+++..|-....... ........+ ...+.++ ..+..+.
T Consensus 525 ----------~l~-------------~~tv~eni~~~~~~~~~~~~~~~~~---~i~~~l~---~~~l~~~~~~~~g~~~ 575 (659)
T TIGR00954 525 ----------YMT-------------LGTLRDQIIYPDSSEDMKRRGLSDK---DLEQILD---NVQLTHILEREGGWSA 575 (659)
T ss_pred ----------CCC-------------CcCHHHHHhcCCChhhhhccCCCHH---HHHHHHH---HcCCHHHHhhcCCccc
Confidence 222 111111100000000 000000000 0011111 1111110
Q ss_pred ccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEE
Q psy3001 341 YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL 420 (602)
Q Consensus 341 ~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l 420 (602)
....+..+| ||||||++|||||+++|+++||||||++||+++++.+.+.+++. ++|+|+||||++.+..||++++|
T Consensus 576 ~~~~~~~LS--gGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l 651 (659)
T TIGR00954 576 VQDWMDVLS--GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYM 651 (659)
T ss_pred ccccccCCC--HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEE
Confidence 112345677 69999999999999999999999999999999999999998764 78999999999998889999999
Q ss_pred eC
Q psy3001 421 DK 422 (602)
Q Consensus 421 ~~ 422 (602)
+.
T Consensus 652 ~~ 653 (659)
T TIGR00954 652 DG 653 (659)
T ss_pred eC
Confidence 73
No 83
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-38 Score=319.05 Aligned_cols=213 Identities=22% Similarity=0.340 Sum_probs=171.9
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+|+++.+| |+++|+|||||||||++++|+|+..|++|+|.++|+++..+++. ++.|++|+|+
T Consensus 17 ~~~av~~isl~i~~G-ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~VFQ~-------- 85 (352)
T COG3842 17 DFTAVDDISLDIKKG-EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQS-------- 85 (352)
T ss_pred CeeEEecceeeecCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccceeecC--------
Confidence 467899999999998 99999999999999999999999999999999999999998875 5789999997
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchh-HHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL-QRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
..+| ..-++.+++.++..... ........+..+.++.+.+.+...+.++.+| |||+
T Consensus 86 ---YALF------------------PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLS--GGQq 142 (352)
T COG3842 86 ---YALF------------------PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLS--GGQQ 142 (352)
T ss_pred ---cccC------------------CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhC--hHHH
Confidence 2222 12223333222211000 0001122344455557777777888899999 5999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
|||||||||+.+|++|+||||.|+||.+-+..+...++++. .|.|.|+||||-++... +|||.||++|+|...|+++
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ 222 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPE 222 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHH
Confidence 99999999999999999999999999999999988887764 37999999999999888 9999999999999999999
Q ss_pred HHhhcchhHHH
Q psy3001 433 VLMKNKASIFY 443 (602)
Q Consensus 433 ~l~~~~~~~~~ 443 (602)
+++..+...|.
T Consensus 223 eiY~~P~~~fV 233 (352)
T COG3842 223 EIYERPATRFV 233 (352)
T ss_pred HHhhCcchHHH
Confidence 99987655443
No 84
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=7.6e-38 Score=322.80 Aligned_cols=212 Identities=26% Similarity=0.384 Sum_probs=167.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH----hhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~----~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| |+++|+|+||||||||+++|+|+++|++|+|.++|.++..++...+ ++.++|++|++.
T Consensus 6 ~~~l~~vs~~i~~G-ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~--- 81 (363)
T TIGR01186 6 KKGVNDADLAIAKG-EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA--- 81 (363)
T ss_pred ceeEEeeEEEEcCC-CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc---
Confidence 45899999999998 9999999999999999999999999999999999999999888877 789999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+|. .. ++.+++... ...... ......+..+.++.+++.......+..+| |
T Consensus 82 --------l~~------------~~------TV~eNi~~~~~~~~~~-~~~~~~~~~~~l~~vgL~~~~~~~p~~LS--G 132 (363)
T TIGR01186 82 --------LFP------------HM------TILQNTSLGPELLGWP-EQERKEKALELLKLVGLEEYEHRYPDELS--G 132 (363)
T ss_pred --------CCC------------CC------CHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCchhhhCChhhCC--H
Confidence 220 01 111111000 000000 00112233344445666666777788888 5
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
||||||+|||||+.+|++|+|||||++||+.++..+.+.+.++. .++|+|+|||+++++.. ||+|++|++|++++.|
T Consensus 133 Gq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g 212 (363)
T TIGR01186 133 GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVG 212 (363)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeC
Confidence 99999999999999999999999999999999999999998864 37999999999999877 9999999999999999
Q ss_pred ChhHHhhcchhHH
Q psy3001 430 SPSVLMKNKASIF 442 (602)
Q Consensus 430 ~~~~l~~~~~~~~ 442 (602)
++++++..+...|
T Consensus 213 ~~~ei~~~p~~~~ 225 (363)
T TIGR01186 213 TPDEILRNPANEY 225 (363)
T ss_pred CHHHHHhCcccHH
Confidence 9999887644333
No 85
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=4.8e-38 Score=278.65 Aligned_cols=193 Identities=26% Similarity=0.319 Sum_probs=148.8
Q ss_pred CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccce
Q psy3001 212 LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSV 291 (602)
Q Consensus 212 ~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~ 291 (602)
+|++||+||||||||||+++|+|+..|.+|+|.++|+|.....+. .+-+++++|+ ..+|..
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSmlFQE-----------nNLFaH------ 85 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSMLFQE-----------NNLFAH------ 85 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhhhhhc-----------cccchh------
Confidence 399999999999999999999999999999999999999887764 4578888987 222211
Q ss_pred eeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeE
Q psy3001 292 LYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKIL 371 (602)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~il 371 (602)
-+++.++.......+.--.....+.......+++.....+.+.++| ||||||+||||+|+++.+||
T Consensus 86 ------------LtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LS--GGqRQRvALARclvR~~Pil 151 (231)
T COG3840 86 ------------LTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELS--GGQRQRVALARCLVREQPIL 151 (231)
T ss_pred ------------hhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccC--chHHHHHHHHHHHhccCCeE
Confidence 0111111111111111111111122222335666666778888899 59999999999999999999
Q ss_pred EEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhhc
Q psy3001 372 ILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 372 iLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
+||||+|+|||.-+.++...+.++. ++.|+++|||.++.+.. +|+++++++|+|...|+..+++..
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 9999999999999999999888864 36899999999999988 999999999999999998888765
No 86
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.6e-38 Score=300.29 Aligned_cols=215 Identities=29% Similarity=0.430 Sum_probs=175.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHh----hccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR----SRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~----~~i~~v~Q~~~~~~ 273 (602)
.+-++|+||.+++| |+..|.|-||||||||+++++|+++|+.|+|.++|.|+..++..++| +.+++|+|....+
T Consensus 41 vvGv~~~sl~v~~G-eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl- 118 (386)
T COG4175 41 VVGVNDASLDVEEG-EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL- 118 (386)
T ss_pred EEeeccceeeecCC-eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc-
Confidence 46799999999998 99999999999999999999999999999999999999999988765 6899999962211
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
|+ .+...| ..+.....-.....+..+..+.++.+++..+...++..||| |
T Consensus 119 ------Ph----------------rtVl~N------v~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSG--G 168 (386)
T COG4175 119 ------PH----------------RTVLEN------VAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSG--G 168 (386)
T ss_pred ------cc----------------hhHhhh------hhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccc--h
Confidence 11 111111 00000000001123445566667788888888999999995 9
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
+||||.|||||..+|+||++|||+|+|||--+.++++.|.++.. ++|||+||||+++... .|||.+|++|+|+..|+
T Consensus 169 MqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gt 248 (386)
T COG4175 169 MQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGT 248 (386)
T ss_pred HHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCC
Confidence 99999999999999999999999999999999999988877643 6999999999999988 99999999999999999
Q ss_pred hhHHhhcchhHHHH
Q psy3001 431 PSVLMKNKASIFYS 444 (602)
Q Consensus 431 ~~~l~~~~~~~~~~ 444 (602)
|+|++.++..-|-.
T Consensus 249 p~eIl~~PAndYV~ 262 (386)
T COG4175 249 PEEILLNPANDYVR 262 (386)
T ss_pred HHHHHcCccHHHHH
Confidence 99999887665543
No 87
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-38 Score=300.05 Aligned_cols=205 Identities=25% Similarity=0.394 Sum_probs=154.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++|.+|+|.+.|.+...... +..||||||....
T Consensus 18 ~vl~~i~l~v~~G-~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgYVPQ~~~~------- 86 (254)
T COG1121 18 PVLEDISLSVEKG-EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGYVPQKSSV------- 86 (254)
T ss_pred eeeeccEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEEcCccccc-------
Confidence 4899999999988 9999999999999999999999999999999999987765433 5689999995211
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccch---hHHH-HHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSN---LQRF-YVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
.+ .+.-++.+.+....... +... .....+..+.++.++...+....-..|| |||
T Consensus 87 -d~-------------------~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LS--GGQ 144 (254)
T COG1121 87 -DR-------------------SFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELS--GGQ 144 (254)
T ss_pred -CC-------------------CCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccC--cHH
Confidence 01 11111112111110000 0000 0011223344445555555566666777 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
+|||.|||||+++|++|+|||||+++|+.++..+.+.|+++++ |+||++||||+..+.. +|+|+.|+ +++...|+++
T Consensus 145 ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 145 KQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChh
Confidence 9999999999999999999999999999999999999998764 8999999999999988 99999996 5667889998
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
+.++.
T Consensus 224 ~~~~~ 228 (254)
T COG1121 224 EVLTE 228 (254)
T ss_pred hccCH
Confidence 88764
No 88
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.5e-38 Score=299.85 Aligned_cols=209 Identities=25% Similarity=0.348 Sum_probs=163.1
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe---ecCCCChHHHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV---DIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~---~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|+++.+..| |.+|+.||||||||||+++|+|+..|++|.|.++|. |.+.. ..-.++||+|+|+..
T Consensus 16 ~a~~di~l~i~~G-e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R~VGfvFQ~YA----- 87 (345)
T COG1118 16 GALDDISLDIKSG-ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDRKVGFVFQHYA----- 87 (345)
T ss_pred cccccceeeecCC-cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhcceeEEEechh-----
Confidence 4677999999988 999999999999999999999999999999999999 55542 344578999999833
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchh--HHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL--QRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+|.. .++.+++.+...... ........+..+.+..+.+..+...++..|| ||
T Consensus 88 ------LF~H------------------mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLS--GG 141 (345)
T COG1118 88 ------LFPH------------------MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLS--GG 141 (345)
T ss_pred ------hccc------------------chHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcC--hH
Confidence 2211 111122111110000 0001111223333445666777888899999 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||||||||+.+|++|+||||+++||+.-+..+...|++..+ +.|+++||||.+++.. ||||++|++|+|...|+
T Consensus 142 QrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~ 221 (345)
T COG1118 142 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221 (345)
T ss_pred HHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCC
Confidence 99999999999999999999999999999999999999988643 7899999999999988 99999999999999999
Q ss_pred hhHHhhcchhH
Q psy3001 431 PSVLMKNKASI 441 (602)
Q Consensus 431 ~~~l~~~~~~~ 441 (602)
+++++..+...
T Consensus 222 p~ev~~~P~s~ 232 (345)
T COG1118 222 PDEVYDHPASR 232 (345)
T ss_pred HHHHhcCCCcc
Confidence 99998876543
No 89
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.6e-37 Score=277.75 Aligned_cols=202 Identities=25% Similarity=0.334 Sum_probs=161.5
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIF 273 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~ 273 (602)
+...++||||++++| |++-|+||||||||||+|+|.+...|+.|+|.++|.|+..++-. .+|++||+|+|+...
T Consensus 14 g~~aL~~vs~~i~~G-ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rL-- 90 (223)
T COG2884 14 GREALRDVSFHIPKG-EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRL-- 90 (223)
T ss_pred CchhhhCceEeecCc-eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccc--
Confidence 356899999999998 99999999999999999999999999999999999999887644 689999999997221
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
....++.+++..+....-..-.....+..+.++.+++......++..||| |
T Consensus 91 ---------------------------L~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSG--G 141 (223)
T COG2884 91 ---------------------------LPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSG--G 141 (223)
T ss_pred ---------------------------cccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCc--h
Confidence 11112222221111100001112223444556677777778888999994 9
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||++||||++.+|++||-||||-+|||+....+++.+.+.. .|.||+++||+.+.+.. --|++.+++|+++....
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999998875 58999999999999998 67899999999986543
No 90
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-37 Score=302.70 Aligned_cols=221 Identities=27% Similarity=0.397 Sum_probs=175.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-C----CCceEEECCeecCCCChHHHh----hccceeccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-P----ADGTIIIDGVDIRTLGLHTLR----SRLTIIPQV 268 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-~----~~G~I~i~g~~~~~~~~~~~~----~~i~~v~Q~ 268 (602)
...++||||+..+| |++||||+|||||||+.++|+|+++ | .+|+|.++|.++..++.++++ +.|++|+|+
T Consensus 18 v~av~~vs~~i~~G-E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 18 VKAVDGVSFELKKG-EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred EEEEeceeEEEcCC-cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 35899999999998 9999999999999999999999998 4 579999999999999987543 589999999
Q ss_pred chhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC---cccccC
Q psy3001 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP---IYSHFG 345 (602)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~ 345 (602)
|...+. |++- ....+.+.+.. ........++..+..+.++.++..+ ....++
T Consensus 97 p~~sLn-----Pv~~------------------Ig~Qi~E~l~~--h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP 151 (316)
T COG0444 97 PMTSLN-----PVMT------------------IGDQIAEVLRL--HGKGLSKKEAKERAIELLELVGIPDPERRLKSYP 151 (316)
T ss_pred chhhcC-----Chhh------------------HHHHHHHHHHH--hhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC
Confidence 765442 2211 11111111000 0000011122344555566666543 678889
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
+++|| ||||||.||.||+.+|++||.||||++||...+..+.+.|+++.+ +.++|+||||+..+.. ||||+||..
T Consensus 152 helSG--GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYa 229 (316)
T COG0444 152 HELSG--GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYA 229 (316)
T ss_pred cccCC--cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEEC
Confidence 99995 999999999999999999999999999999999999999998764 7999999999999998 999999999
Q ss_pred ceEEeecChhHHhhcchhHHHHHH
Q psy3001 423 GLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 423 G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
|+|+|.|+.++++.++...|....
T Consensus 230 G~iVE~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 230 GRIVEEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred cEEEEeCCHHHHhcCCCChHHHHH
Confidence 999999999999999888877654
No 91
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.8e-37 Score=317.29 Aligned_cols=207 Identities=20% Similarity=0.300 Sum_probs=161.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.++||+|++.
T Consensus 17 ~~~l~~vsl~i~~G-e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v~Q~~~------- 86 (356)
T PRK11650 17 TQVIKGIDLDVADG-EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVFQNYA------- 86 (356)
T ss_pred CEEEeeeeEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCcc-------
Confidence 35799999999998 99999999999999999999999999999999999999877654 478999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. +.++.+++..... .... ......+..+.++.++..........+|| |||||
T Consensus 87 ----lfp------------------~~tv~eNi~~~~~~~~~~-~~~~~~~~~~~l~~~gL~~~~~~~~~~LS--gGq~Q 141 (356)
T PRK11650 87 ----LYP------------------HMSVRENMAYGLKIRGMP-KAEIEERVAEAARILELEPLLDRKPRELS--GGQRQ 141 (356)
T ss_pred ----ccC------------------CCCHHHHHHhHHhhcCCC-HHHHHHHHHHHHHHcCChhHhhCChhhCC--HHHHH
Confidence 220 0111111111000 0000 00111222333445555556666777888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++|+|||||++||+.++..+.+.++++.+ +.|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~ 221 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVE 221 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHH
Confidence 99999999999999999999999999999999999988643 7899999999999987 99999999999999999999
Q ss_pred Hhhcch
Q psy3001 434 LMKNKA 439 (602)
Q Consensus 434 l~~~~~ 439 (602)
++..+.
T Consensus 222 ~~~~p~ 227 (356)
T PRK11650 222 VYEKPA 227 (356)
T ss_pred HHhCCc
Confidence 877643
No 92
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-36 Score=299.93 Aligned_cols=207 Identities=29% Similarity=0.402 Sum_probs=157.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh---HHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~---~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++|++|++.
T Consensus 13 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~---- 87 (235)
T cd03261 13 RTVLKGVDLDVRRG-EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA---- 87 (235)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcc----
Confidence 35799999999998 9999999999999999999999999999999999999877654 567889999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-c-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. . .++.+++... . ...... .....+..+.++.++...........+| |
T Consensus 88 -------~~~------------~------~tv~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--g 139 (235)
T cd03261 88 -------LFD------------S------LTVFENVAFPLREHTRLSE-EEIREIVLEKLEAVGLRGAEDLYPAELS--G 139 (235)
T ss_pred -------cCC------------C------CcHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHcCCchhhcCChhhCC--H
Confidence 110 0 0111110000 0 000000 0001112223334444444444555677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.+++..+ ++|||++||+++.+.. ||++++|++|++++.|
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEec
Confidence 999999999999999999999999999999999999999988643 7899999999999987 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
+++++...
T Consensus 220 ~~~~~~~~ 227 (235)
T cd03261 220 TPEELRAS 227 (235)
T ss_pred CHHHHcCC
Confidence 98887643
No 93
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-36 Score=313.94 Aligned_cols=208 Identities=24% Similarity=0.385 Sum_probs=161.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|.++...++ .++.++|++|++.
T Consensus 19 ~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~~~------- 88 (351)
T PRK11432 19 NTVIDNLNLTIKQG-TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICMVFQSYA------- 88 (351)
T ss_pred eEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcc-------
Confidence 34799999999988 9999999999999999999999999999999999999987664 3578999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. ..++.+++..... ..... .....+..+.++.++...+.......+| |||||
T Consensus 89 ----lfp------------------~~tv~eNi~~~l~~~~~~~-~~~~~~v~~~l~~~gl~~~~~r~~~~LS--gGq~Q 143 (351)
T PRK11432 89 ----LFP------------------HMSLGENVGYGLKMLGVPK-EERKQRVKEALELVDLAGFEDRYVDQIS--GGQQQ 143 (351)
T ss_pred ----cCC------------------CCCHHHHHHHHHhHcCCCH-HHHHHHHHHHHHHcCCchhhcCChhhCC--HHHHH
Confidence 220 0111111111000 00000 0111222233334455555666777888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 144 RVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 144 RVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999988743 7899999999999977 99999999999999999999
Q ss_pred Hhhcchh
Q psy3001 434 LMKNKAS 440 (602)
Q Consensus 434 l~~~~~~ 440 (602)
++..+..
T Consensus 224 ~~~~p~~ 230 (351)
T PRK11432 224 LYRQPAS 230 (351)
T ss_pred HHhCCCc
Confidence 8876443
No 94
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=1.4e-36 Score=314.03 Aligned_cols=207 Identities=24% Similarity=0.357 Sum_probs=162.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|+++...++. ++.++|++|++.
T Consensus 17 ~~~l~~vs~~i~~G-e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~v~Q~~~------- 86 (353)
T TIGR03265 17 FTALKDISLSVKKG-EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVFQSYA------- 86 (353)
T ss_pred eEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCcc-------
Confidence 34799999999988 99999999999999999999999999999999999999877653 578999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccc-hhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS-NLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. ..++.+++...... ... ......+..+.++.++..++.......+| |||||
T Consensus 87 ----lfp------------------~~tv~eNi~~~~~~~~~~-~~~~~~~~~~~l~~l~L~~~~~~~~~~LS--gGq~Q 141 (353)
T TIGR03265 87 ----LFP------------------NLTVADNIAYGLKNRGMG-RAEVAERVAELLDLVGLPGSERKYPGQLS--GGQQQ 141 (353)
T ss_pred ----cCC------------------CCcHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCchhhCChhhCC--HHHHH
Confidence 220 01111111100000 000 00111233344445666666777788888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++|||||+.+|++|+|||||++||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 142 RvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~ 221 (353)
T TIGR03265 142 RVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQE 221 (353)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999988643 7899999999999887 99999999999999999999
Q ss_pred Hhhcch
Q psy3001 434 LMKNKA 439 (602)
Q Consensus 434 l~~~~~ 439 (602)
++..+.
T Consensus 222 ~~~~p~ 227 (353)
T TIGR03265 222 IYRHPA 227 (353)
T ss_pred HHhCCC
Confidence 987643
No 95
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.1e-36 Score=304.37 Aligned_cols=216 Identities=30% Similarity=0.503 Sum_probs=163.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ .+|+|.++|.++..++...+|+.++|+||++
T Consensus 17 ~~~l~~isl~I~~G-e~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~-------- 86 (275)
T cd03289 17 NAVLENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKV-------- 86 (275)
T ss_pred CcceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCc--------
Confidence 34799999999998 9999999999999999999999998 7999999999999999999999999999983
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-HHHH-Hhh--cccCCcccccCCcCCCChh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-QLKR-LES--VSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-l~~--~~~~~~~~~~~~~lsgs~G 353 (602)
.+| ..++..|-.... .. ...+....... .++. +.. ......+.+.+..+| +|
T Consensus 87 ---~lf-------------~~tv~~nl~~~~-----~~-~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS--~G 142 (275)
T cd03289 87 ---FIF-------------SGTFRKNLDPYG-----KW-SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLS--HG 142 (275)
T ss_pred ---ccc-------------hhhHHHHhhhcc-----CC-CHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCC--HH
Confidence 333 111111100000 00 00011110000 0000 000 011122344566677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
||||++||||++++|++|||||||++||+.+...+.+.|++...++|+|+||||++++..||||++|++|+++++|++++
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~ 222 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQK 222 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999988899999999999999999999
Q ss_pred HhhcchhHHHHHHHh
Q psy3001 434 LMKNKASIFYSMAKD 448 (602)
Q Consensus 434 l~~~~~~~~~~~~~~ 448 (602)
+++. ...+..+...
T Consensus 223 l~~~-~~~~~~~~~~ 236 (275)
T cd03289 223 LLNE-KSHFKQAISP 236 (275)
T ss_pred HhhC-cHHHHHHHhh
Confidence 9885 3455555443
No 96
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-36 Score=308.93 Aligned_cols=207 Identities=21% Similarity=0.341 Sum_probs=155.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC----------------ChHHHhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL----------------GLHTLRSRL 262 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~----------------~~~~~~~~i 262 (602)
..++|+||++.+| +++||+|+||||||||+++|+|+++|++|+|.++|.++... ....+++.+
T Consensus 40 ~~L~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (320)
T PRK13631 40 VALNNISYTFEKN-KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118 (320)
T ss_pred cceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence 4678888888777 99999999999999999999999999999999999988653 345678999
Q ss_pred ceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC-Cc
Q psy3001 263 TIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS-PI 340 (602)
Q Consensus 263 ~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 340 (602)
+|++|++..+ +| .. ++.+++... ....... .....+..+.++.++.. ..
T Consensus 119 g~v~Q~~~~~---------l~-------------~~------tv~eni~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~ 169 (320)
T PRK13631 119 SMVFQFPEYQ---------LF-------------KD------TIEKDIMFGPVALGVKK-SEAKKLAKFYLNKMGLDDSY 169 (320)
T ss_pred EEEEECchhc---------cc-------------cc------hHHHHHHhhHHhcCCCH-HHHHHHHHHHHHHcCCChhH
Confidence 9999985311 11 10 111111000 0000000 00111222233344443 34
Q ss_pred ccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEE
Q psy3001 341 YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVL 418 (602)
Q Consensus 341 ~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~ 418 (602)
....+.++| ||||||++|||||+.+|++|||||||++||+.++.++.+.|+++. +++|||+|||+++.+.. ||+|+
T Consensus 170 ~~~~~~~LS--gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 170 LERSPFGLS--GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hcCCcccCC--HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 555667788 599999999999999999999999999999999999999998764 47899999999998876 99999
Q ss_pred EEeCceEEeecChhHHhhc
Q psy3001 419 VLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 419 ~l~~G~i~~~g~~~~l~~~ 437 (602)
+|++|++++.|++++++..
T Consensus 248 vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999988754
No 97
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-36 Score=310.13 Aligned_cols=217 Identities=21% Similarity=0.310 Sum_probs=163.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC----CCCceEEECCeecCCCChHHHhh----ccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE----PADGTIIIDGVDIRTLGLHTLRS----RLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~----~~~G~I~i~g~~~~~~~~~~~~~----~i~~v~Q~~ 269 (602)
...++||||++.+| |++||+|+||||||||+++|+|+++ |++|+|.++|.++..++...+++ .++|++|++
T Consensus 20 ~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 98 (326)
T PRK11022 20 FRAVDRISYSVKQG-EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDP 98 (326)
T ss_pred EEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 35899999999999 9999999999999999999999997 48999999999998888766543 799999985
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC---cccccCC
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP---IYSHFGE 346 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~ 346 (602)
...+. |.+. ..+.+.+.+. ...... ......+..+.++.++..+ .......
T Consensus 99 ~~~l~-----p~~~------------------v~~~i~~~l~--~~~~~~-~~~~~~~~~~~L~~~gL~~~~~~l~~~p~ 152 (326)
T PRK11022 99 MTSLN-----PCYT------------------VGFQIMEAIK--VHQGGN-KKTRRQRAIDLLNQVGIPDPASRLDVYPH 152 (326)
T ss_pred hhhcC-----CcCC------------------HHHHHHHHHH--HhcCCC-HHHHHHHHHHHHHHCCCCChHHHHhCCch
Confidence 32110 1100 0000100000 000000 0011122333344444432 3455677
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
.+| ||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||||++|.+|
T Consensus 153 ~LS--gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G 230 (326)
T PRK11022 153 QLS--GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAG 230 (326)
T ss_pred hCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 788 5999999999999999999999999999999999999999988753 7899999999999977 9999999999
Q ss_pred eEEeecChhHHhhcchhHHH
Q psy3001 424 LVVEFDSPSVLMKNKASIFY 443 (602)
Q Consensus 424 ~i~~~g~~~~l~~~~~~~~~ 443 (602)
++++.|+++++++++...|.
T Consensus 231 ~ive~g~~~~~~~~p~hpyt 250 (326)
T PRK11022 231 QVVETGKAHDIFRAPRHPYT 250 (326)
T ss_pred EEEEECCHHHHhhCCCChHH
Confidence 99999999999876555554
No 98
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=2.6e-36 Score=309.89 Aligned_cols=218 Identities=23% Similarity=0.364 Sum_probs=163.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCeecCCCChHHHh----hccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLGLHTLR----SRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~~~~~~~~~~~----~~i~~v~Q~~~ 270 (602)
...++||||++.+| |+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++...++ +.|+||+|++.
T Consensus 29 ~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 29 VTAVNDLNFSLRAG-ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 35799999999998 999999999999999999999999996 99999999999988876653 47999999853
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC---cccccCCc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP---IYSHFGET 347 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~ 347 (602)
..+. |.+. ..+.+...+.........+. ..+..+.++.++..+ .....+..
T Consensus 108 ~~l~-----p~~~------------------v~~~i~~~~~~~~~~~~~~~---~~~~~~~L~~vgL~~~~~~~~~~p~~ 161 (330)
T PRK09473 108 TSLN-----PYMR------------------VGEQLMEVLMLHKGMSKAEA---FEESVRMLDAVKMPEARKRMKMYPHE 161 (330)
T ss_pred hhcC-----CCCC------------------HHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHcCCCChHHHhcCCccc
Confidence 2111 1100 00001000000000000111 112223333444332 23456777
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
+| ||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|.+|+
T Consensus 162 LS--gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ 239 (330)
T PRK09473 162 FS--GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGR 239 (330)
T ss_pred CC--HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 88 6999999999999999999999999999999999999999988754 7899999999999987 99999999999
Q ss_pred EEeecChhHHhhcchhHHHH
Q psy3001 425 VVEFDSPSVLMKNKASIFYS 444 (602)
Q Consensus 425 i~~~g~~~~l~~~~~~~~~~ 444 (602)
|++.|+++++++.+...|..
T Consensus 240 ive~g~~~~i~~~p~~pyt~ 259 (330)
T PRK09473 240 TMEYGNARDVFYQPSHPYSI 259 (330)
T ss_pred EEEECCHHHHHhCCCCHHHH
Confidence 99999999998876555544
No 99
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-36 Score=311.60 Aligned_cols=208 Identities=26% Similarity=0.400 Sum_probs=160.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..++... +++.++|++|++.
T Consensus 18 ~~il~~vsl~i~~G-ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~---- 92 (343)
T PRK11153 18 IHALNNVSLHIPAG-EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFN---- 92 (343)
T ss_pred eEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCc----
Confidence 45899999999998 999999999999999999999999999999999999998876554 4788999999742
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. .. ++.+++.... ...... .....+..+.++.++...........+| ||
T Consensus 93 -------l~~------------~~------tv~eni~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~LS--gG 144 (343)
T PRK11153 93 -------LLS------------SR------TVFDNVALPLELAGTPK-AEIKARVTELLELVGLSDKADRYPAQLS--GG 144 (343)
T ss_pred -------cCC------------CC------cHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCchhhhCChhhCC--HH
Confidence 110 00 1111100000 000000 0011122233344455444555566777 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||++|||||+++|++|+|||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 145 q~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~ 224 (343)
T PRK11153 145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999998743 7899999999999987 99999999999999999
Q ss_pred hhHHhhcc
Q psy3001 431 PSVLMKNK 438 (602)
Q Consensus 431 ~~~l~~~~ 438 (602)
+++++..+
T Consensus 225 ~~~~~~~~ 232 (343)
T PRK11153 225 VSEVFSHP 232 (343)
T ss_pred HHHHHhCC
Confidence 98887653
No 100
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=2.9e-36 Score=309.35 Aligned_cols=215 Identities=26% Similarity=0.374 Sum_probs=163.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| |+++|+|+||||||||+++|+|+++|++|+|.++|.++..++.. .+++.++||+|++...+.
T Consensus 34 ~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRLYEG-ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 45899999999998 99999999999999999999999999999999999999887654 356789999998532110
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTG 350 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsg 350 (602)
|. .++.+++... ....... .....+..+.++.++.. .........||
T Consensus 113 -----p~----------------------~tv~~~i~~~l~~~~~~~~~-~~~~~~~~~~l~~vgl~~~~~~~~p~~LS- 163 (331)
T PRK15079 113 -----PR----------------------MTIGEIIAEPLRTYHPKLSR-QEVKDRVKAMMLKVGLLPNLINRYPHEFS- 163 (331)
T ss_pred -----CC----------------------CCHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHcCCChHHhcCCcccCC-
Confidence 00 0011110000 0000000 01111222333344442 24566677888
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|.+|++++
T Consensus 164 -gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 164 -GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred -HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 5999999999999999999999999999999999999999988753 7899999999999987 99999999999999
Q ss_pred ecChhHHhhcchhHHH
Q psy3001 428 FDSPSVLMKNKASIFY 443 (602)
Q Consensus 428 ~g~~~~l~~~~~~~~~ 443 (602)
.|+.++++.++...|.
T Consensus 243 ~g~~~~i~~~~~~py~ 258 (331)
T PRK15079 243 LGTYDEVYHNPLHPYT 258 (331)
T ss_pred EcCHHHHHcCCCCHHH
Confidence 9999998876544443
No 101
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-36 Score=308.58 Aligned_cols=217 Identities=21% Similarity=0.313 Sum_probs=164.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++||||++.+| +++||+|+||||||||+++|+|+++|++|+|.++|.++..++.. .+|+.++||+|++...+.
T Consensus 28 ~~~l~~vsl~i~~G-e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTLERG-KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence 35799999999998 99999999999999999999999999999999999999887654 467789999998532110
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~G 353 (602)
|.+. ..+.+............. ....+..+.++.++..+ ........+| ||
T Consensus 107 -----p~~~------------------v~~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~gL~~~~~~~~p~~LS--gG 158 (327)
T PRK11308 107 -----PRKK------------------VGQILEEPLLINTSLSAA---ERREKALAMMAKVGLRPEHYDRYPHMFS--GG 158 (327)
T ss_pred -----CccC------------------HHHHHHHHHHHccCCCHH---HHHHHHHHHHHHCCCChHHhcCCCccCC--HH
Confidence 1000 000000000000000000 11122333344444432 4466677888 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|.+|++++.|+
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~ 238 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988743 7899999999999987 99999999999999999
Q ss_pred hhHHhhcchhHHH
Q psy3001 431 PSVLMKNKASIFY 443 (602)
Q Consensus 431 ~~~l~~~~~~~~~ 443 (602)
.++++.++...|.
T Consensus 239 ~~~~~~~p~hpyt 251 (327)
T PRK11308 239 KEQIFNNPRHPYT 251 (327)
T ss_pred HHHHhcCCCCHHH
Confidence 9999876554444
No 102
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=2.2e-36 Score=316.85 Aligned_cols=218 Identities=30% Similarity=0.431 Sum_probs=170.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC---hHHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~---~~~~~~~i~~v~Q~~~~~~~ 274 (602)
.-.++||||...+| |++||||+||||||||.|+|+|+++|++|+|.++|.+ ..++ ....|+.+-+++|+|..-..
T Consensus 304 ~~Av~~VSf~l~~G-E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~~~~~~~~r~~~QmvFQdp~~SLn 381 (539)
T COG1123 304 VKAVDDVSFDLREG-ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSLN 381 (539)
T ss_pred eeeeeeeeeEecCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccccchhhhhhhheEEEEeCcccccC
Confidence 45799999999998 9999999999999999999999999999999999987 3333 44577899999999643221
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~ 352 (602)
| ..++.+.+..+.. ...........+..+.++.+++.+ ....+++.+||
T Consensus 382 -----P----------------------r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSG-- 432 (539)
T COG1123 382 -----P----------------------RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSG-- 432 (539)
T ss_pred -----c----------------------cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCc--
Confidence 1 0111111000000 000001111123444455666655 67888999995
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||+||||||+.+|+++|+|||||+||+.+...+.+.|+++.+ |.|.++||||++.+.. ||||+||++|+|++.|
T Consensus 433 GQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred chhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999988754 6999999999999999 9999999999999999
Q ss_pred ChhHHhhcchhHHHHHH
Q psy3001 430 SPSVLMKNKASIFYSMA 446 (602)
Q Consensus 430 ~~~~l~~~~~~~~~~~~ 446 (602)
+.+++++.+...|.+..
T Consensus 513 ~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 513 PTEKVFENPQHPYTRKL 529 (539)
T ss_pred CHHHHhcCCCChHHHHH
Confidence 99999988777776554
No 103
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-36 Score=304.00 Aligned_cols=208 Identities=26% Similarity=0.430 Sum_probs=159.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC--hHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG--LHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~--~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++||||++.+| +++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|+||++...+
T Consensus 20 ~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~-- 96 (287)
T PRK13637 20 KKALDNVNIEIEDG-EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL-- 96 (287)
T ss_pred cceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcc--
Confidence 35899999999998 999999999999999999999999999999999999997654 3567889999999853211
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC--CcccccCCcCCCCh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS--PIYSHFGETVTGNV 352 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~lsgs~ 352 (602)
+ . .++.+++... ....... .....+..+.++.++.. .........+| |
T Consensus 97 -------~-------------~------~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~~~LS--g 147 (287)
T PRK13637 97 -------F-------------E------ETIEKDIAFGPINLGLSE-EEIENRVKRAMNIVGLDYEDYKDKSPFELS--G 147 (287)
T ss_pred -------c-------------c------ccHHHHHHhHHHHCCCCH-HHHHHHHHHHHHHcCCCchhhccCCcccCC--H
Confidence 1 0 0111110000 0000000 01111222333344443 33455566777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.+..++.+.++++.+ +.|||++||+++.+.. ||||++|++|++++.|
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988743 7899999999999876 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
++++++..
T Consensus 228 ~~~~~~~~ 235 (287)
T PRK13637 228 TPREVFKE 235 (287)
T ss_pred CHHHHHhC
Confidence 99887653
No 104
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=2.7e-35 Score=351.51 Aligned_cols=209 Identities=21% Similarity=0.214 Sum_probs=145.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc----CCCCceEEECCeecCCCChHHHhhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~----~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~ 273 (602)
...++|+|+.+.+| |+++|+||||||||||+|+|+|.. .|.+|+|.++|.++.+.. ...++.++|++|+..
T Consensus 74 ~~iL~~vs~~i~~G-e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~--- 148 (1394)
T TIGR00956 74 FDILKPMDGLIKPG-ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDV--- 148 (1394)
T ss_pred ceeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccc---
Confidence 44799999999998 999999999999999999999986 578999999999876543 345677999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHH-HHHhhcccCCcc-----cccC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQL-KRLESVSRSPIY-----SHFG 345 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~l~~~~~~~~~-----~~~~ 345 (602)
++..... ..++.+.... ..+. ....... ....+.. ..++.+++.... ....
T Consensus 149 --------~~~~lTV--------~E~l~f~~~~----~~~~~~~~~~~~~-~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 207 (1394)
T TIGR00956 149 --------HFPHLTV--------GETLDFAARC----KTPQNRPDGVSRE-EYAKHIADVYMATYGLSHTRNTKVGNDFV 207 (1394)
T ss_pred --------cCCCCCH--------HHHHHHHHHh----CCCCCCCCCCCHH-HHHHHHHHHHHHHcCcccccCceeCCCcC
Confidence 1100000 0000000000 0000 0000000 0001111 123334443322 1223
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecc-ccccc-CCeEEEEe
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRL-NTIID-SDRVLVLD 421 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l-~~i~~-~d~i~~l~ 421 (602)
..+| |||||||+|||||+.+|++++|||||++||+.++..+.+.|+++.+ |+|+|+++|++ +.+.. +|++++|+
T Consensus 208 ~~LS--GGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~ 285 (1394)
T TIGR00956 208 RGVS--GGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLY 285 (1394)
T ss_pred CCCC--cccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Confidence 4566 6999999999999999999999999999999999999999998753 78999999997 46666 99999999
Q ss_pred CceEEeecChhHH
Q psy3001 422 KGLVVEFDSPSVL 434 (602)
Q Consensus 422 ~G~i~~~g~~~~l 434 (602)
+|+++..|+++++
T Consensus 286 ~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 286 EGYQIYFGPADKA 298 (1394)
T ss_pred CCeEEEECCHHHH
Confidence 9999988766544
No 105
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=3.7e-36 Score=306.66 Aligned_cols=205 Identities=24% Similarity=0.317 Sum_probs=156.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| +++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|+||++..
T Consensus 6 ~~~l~~vs~~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~------ 77 (302)
T TIGR01188 6 FKAVDGVNFKVREG-EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASV------ 77 (302)
T ss_pred eeEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCC------
Confidence 35799999999998 9999999999999999999999999999999999999865 345678899999997321
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. . .++.+++... ....... .....+..+.++.++...........+| +||||
T Consensus 78 -----~~------------~------~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~q 131 (302)
T TIGR01188 78 -----DE------------D------LTGRENLEMMGRLYGLPK-DEAEERAEELLELFELGEAADRPVGTYS--GGMRR 131 (302)
T ss_pred -----CC------------C------CcHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCChhHhCCchhhCC--HHHHH
Confidence 10 0 0111110000 0000000 0011122233334444444455556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+++|++|||||||++||+.+...+.+.++++. +++|||++||+++.+.. ||+|++|++|+++..|+++++
T Consensus 132 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 132 RLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998874 47899999999999987 999999999999999998887
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 212 ~~ 213 (302)
T TIGR01188 212 KR 213 (302)
T ss_pred HH
Confidence 54
No 106
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=6.1e-36 Score=309.34 Aligned_cols=207 Identities=22% Similarity=0.336 Sum_probs=160.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|+++...++ .++.++|++|++.
T Consensus 15 ~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v~Q~~~------- 84 (353)
T PRK10851 15 TQVLNDISLDIPSG-QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFVFQHYA------- 84 (353)
T ss_pred eEEEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEEecCcc-------
Confidence 34799999999998 9999999999999999999999999999999999999976554 4578999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-----chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-----SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. . .++.+++..... .... ......+..+.++.++...........+| |
T Consensus 85 ----l~p------------~------~tv~eni~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~LS--g 139 (353)
T PRK10851 85 ----LFR------------H------MTVFDNIAFGLTVLPRRERPN-AAAIKAKVTQLLEMVQLAHLADRYPAQLS--G 139 (353)
T ss_pred ----cCC------------C------CcHHHHHHhhhhhcccccCCC-HHHHHHHHHHHHHHcCCchhhhCChhhCC--H
Confidence 110 0 011111110000 0000 00111222333444555555666677788 5
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|+|||||++||+.++..+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|
T Consensus 140 Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g 219 (353)
T PRK10851 140 GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999988753 6899999999999887 9999999999999999
Q ss_pred ChhHHhhcch
Q psy3001 430 SPSVLMKNKA 439 (602)
Q Consensus 430 ~~~~l~~~~~ 439 (602)
++++++..+.
T Consensus 220 ~~~~i~~~p~ 229 (353)
T PRK10851 220 TPDQVWREPA 229 (353)
T ss_pred CHHHHHhCcc
Confidence 9999887643
No 107
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=4.8e-36 Score=311.52 Aligned_cols=208 Identities=21% Similarity=0.331 Sum_probs=161.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...++. ++.++|++|++.
T Consensus 27 ~~~l~~vsl~i~~G-e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~vfQ~~~------- 96 (375)
T PRK09452 27 KEVISNLDLTINNG-EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNTVFQSYA------- 96 (375)
T ss_pred eEEEeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEEEecCcc-------
Confidence 34688999999888 99999999999999999999999999999999999999876654 478999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. ..++.+++..... .... ......+..+.++.++..+........|| |||||
T Consensus 97 ----lfp------------------~ltv~eNi~~~l~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~p~~LS--gGq~Q 151 (375)
T PRK09452 97 ----LFP------------------HMTVFENVAFGLRMQKTP-AAEITPRVMEALRMVQLEEFAQRKPHQLS--GGQQQ 151 (375)
T ss_pred ----cCC------------------CCCHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHcCCchhhhCChhhCC--HHHHH
Confidence 220 0111111111000 0000 00111122233444555566667777888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 152 RVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999988653 7899999999999887 99999999999999999999
Q ss_pred Hhhcchh
Q psy3001 434 LMKNKAS 440 (602)
Q Consensus 434 l~~~~~~ 440 (602)
++..+..
T Consensus 232 i~~~p~~ 238 (375)
T PRK09452 232 IYEEPKN 238 (375)
T ss_pred HHhCccc
Confidence 8876543
No 108
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.3e-36 Score=301.84 Aligned_cols=204 Identities=22% Similarity=0.283 Sum_probs=157.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+
T Consensus 19 ~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~----- 92 (274)
T PRK13647 19 KALKGLSLSIPEG-SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQV----- 92 (274)
T ss_pred eeeeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhh-----
Confidence 4899999999998 9999999999999999999999999999999999999988777888889999999853211
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+ .. ++.+++... ....... .....+..+.++.++..+........+| ||||||
T Consensus 93 ----~-------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~LS--gG~~qr 146 (274)
T PRK13647 93 ----F-------------SS------TVWDDVAFGPVNMGLDK-DEVERRVEEALKAVRMWDFRDKPPYHLS--YGQKKR 146 (274)
T ss_pred ----c-------------cC------cHHHHHHhhHHHcCCCH-HHHHHHHHHHHHHCCCHHHhcCChhhCC--HHHHHH
Confidence 1 00 111110000 0000000 0011122223334444444555666777 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999999999998874 47999999999999976 999999999999999988653
No 109
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.1e-36 Score=306.67 Aligned_cols=204 Identities=20% Similarity=0.332 Sum_probs=152.7
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccchhh
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~~ 272 (602)
.|+|+||++.+| +++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+...+++.++|+||+|
T Consensus 97 ~L~~is~~I~~G-e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~--- 172 (329)
T PRK14257 97 VLHDLNLDIKRN-KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP--- 172 (329)
T ss_pred eeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC---
Confidence 444455555455 8999999999999999999999996 579999999999973 34567889999999983
Q ss_pred hhhccCCceeEeeecccceeeeccccceeeccccccccccc-c---cchhHHHHHHHHHHHHHHhhccc----CCccccc
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F---CSNLQRFYVATSRQLKRLESVSR----SPIYSHF 344 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ 344 (602)
++| ..++. +++... . ....+.........++ ...+ .....+.
T Consensus 173 --------~~~-------------~~ti~------eNi~~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~l~~~~~~~ 222 (329)
T PRK14257 173 --------TPF-------------EMSIF------DNVAYGPRNNGINDRKILEKIVEKSLK---SAALWDEVKDDLDKA 222 (329)
T ss_pred --------ccC-------------CCcHH------HHHHhHHHhcCCChHHHHHHHHHHHHH---HcCCcchhhhhhhCC
Confidence 333 11111 111000 0 0000000001111122 2211 1234566
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
+.++| ||||||++||||++++|+||||||||++||+.+...+.+.|+...+++|+|+|||+++++.. ||||++|++|
T Consensus 223 ~~~LS--gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G 300 (329)
T PRK14257 223 GNALS--GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQG 300 (329)
T ss_pred cccCC--HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 77888 69999999999999999999999999999999999999999988778999999999999998 9999999999
Q ss_pred eEEeecChhHHhhcch
Q psy3001 424 LVVEFDSPSVLMKNKA 439 (602)
Q Consensus 424 ~i~~~g~~~~l~~~~~ 439 (602)
++++.|++++++..+.
T Consensus 301 ~i~e~g~~~~l~~~~~ 316 (329)
T PRK14257 301 WIEEAGETKTIFIHPK 316 (329)
T ss_pred EEEEeCCHHHHhcCCC
Confidence 9999999999887543
No 110
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=5.5e-36 Score=295.52 Aligned_cols=207 Identities=28% Similarity=0.411 Sum_probs=156.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ +..++|++|++.
T Consensus 13 ~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~------ 85 (236)
T cd03219 13 LVALDDVSFSVRPG-EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPR------ 85 (236)
T ss_pred EEEecCceEEecCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccc------
Confidence 34799999999998 9999999999999999999999999999999999999987776554 567999999742
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc----cchh------HHHHHHHHHHHHHHhhcccCCcccccCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF----CSNL------QRFYVATSRQLKRLESVSRSPIYSHFGE 346 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 346 (602)
++.. . ++.+++.... .... ........+..+.++.++..........
T Consensus 86 -----l~~~------------~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (236)
T cd03219 86 -----LFPE------------L------TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG 142 (236)
T ss_pred -----cccC------------C------CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh
Confidence 1100 0 0111000000 0000 0000111122233334444444455566
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
.+| ||||||++|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 143 ~LS--gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 143 ELS--YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220 (236)
T ss_pred hCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 677 699999999999999999999999999999999999999998865 57899999999999987 99999999999
Q ss_pred EEeecChhHHhh
Q psy3001 425 VVEFDSPSVLMK 436 (602)
Q Consensus 425 i~~~g~~~~l~~ 436 (602)
+++.++++++..
T Consensus 221 i~~~~~~~~~~~ 232 (236)
T cd03219 221 VIAEGTPDEVRN 232 (236)
T ss_pred EEeecCHHHhcc
Confidence 999998887654
No 111
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=5.6e-36 Score=309.93 Aligned_cols=207 Identities=21% Similarity=0.333 Sum_probs=161.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCC--ceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPAD--GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~--G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++ |+|.++|.++...++ .++.+++++|++.
T Consensus 18 ~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ig~vfQ~~~----- 89 (362)
T TIGR03258 18 NTVLDDLSLEIEAG-ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGLALLFQNYA----- 89 (362)
T ss_pred eEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCEEEEECCcc-----
Confidence 34799999999888 9999999999999999999999999999 999999999977655 3578999999732
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+|. ..++.+++..... .... ......+..+.++.+++..........|| |||
T Consensus 90 ------l~p------------------~~tv~enl~~~l~~~~~~-~~~~~~~v~~~l~~~gL~~~~~~~~~~LS--gGq 142 (362)
T TIGR03258 90 ------LFP------------------HLKVEDNVAFGLRAQKMP-KADIAERVADALKLVGLGDAAAHLPAQLS--GGM 142 (362)
T ss_pred ------cCC------------------CCcHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCCchhhCChhhCC--HHH
Confidence 210 0111111110000 0000 00111223333445566666677778888 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc---ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA---HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||+|||||+.+|++|+|||||++||+.+...+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|+++..|+
T Consensus 143 ~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 143 QQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999988643 6899999999999887 99999999999999999
Q ss_pred hhHHhhcch
Q psy3001 431 PSVLMKNKA 439 (602)
Q Consensus 431 ~~~l~~~~~ 439 (602)
+++++..+.
T Consensus 223 ~~~~~~~p~ 231 (362)
T TIGR03258 223 PQALYDAPA 231 (362)
T ss_pred HHHHHhCcC
Confidence 999987643
No 112
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6e-36 Score=301.64 Aligned_cols=207 Identities=28% Similarity=0.377 Sum_probs=160.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++..++.
T Consensus 21 ~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~---- 95 (279)
T PRK13650 21 YTLNDVSFHVKQG-EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFV---- 95 (279)
T ss_pred eeeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcc----
Confidence 4899999999998 99999999999999999999999999999999999999887888888999999998532110
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
.. ++.+++.... ...... .....+..+.++.++..+........+| +|||||
T Consensus 96 ------------------~~------tv~eni~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~LS--gGq~qr 148 (279)
T PRK13650 96 ------------------GA------TVEDDVAFGLENKGIPH-EEMKERVNEALELVGMQDFKEREPARLS--GGQKQR 148 (279)
T ss_pred ------------------cc------cHHHHHHhhHHhCCCCH-HHHHHHHHHHHHHCCCHhHhhCCcccCC--HHHHHH
Confidence 00 1111100000 000000 0011122233334444444555566777 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecChhHHh
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999988753 79999999999998669999999999999999988876
Q ss_pred hc
Q psy3001 436 KN 437 (602)
Q Consensus 436 ~~ 437 (602)
..
T Consensus 229 ~~ 230 (279)
T PRK13650 229 SR 230 (279)
T ss_pred cC
Confidence 54
No 113
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=6.3e-36 Score=312.27 Aligned_cols=206 Identities=25% Similarity=0.389 Sum_probs=162.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++..++...+++.+++++|++...+.+
T Consensus 16 ~~vL~~vs~~i~~G-eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~-- 92 (402)
T PRK09536 16 TTVLDGVDLSVREG-SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF-- 92 (402)
T ss_pred EEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC--
Confidence 45899999999998 999999999999999999999999999999999999999988889999999999974322110
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc------cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF------CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
++.+++.... ...... ....+..+.++.++...........+|
T Consensus 93 ---------------------------tv~e~v~~~~~~~~~~~~~~~~--~~~~~v~~~le~vgl~~~~~~~~~~LS-- 141 (402)
T PRK09536 93 ---------------------------DVRQVVEMGRTPHRSRFDTWTE--TDRAAVERAMERTGVAQFADRPVTSLS-- 141 (402)
T ss_pred ---------------------------CHHHHHHhccchhcccccCCCH--HHHHHHHHHHHHcCCchhhcCChhhCC--
Confidence 0111100000 000000 011122233334455455555566777
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
+|||||++|||||+++|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. |||+++|++|+++..|
T Consensus 142 gGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G 221 (402)
T PRK09536 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221 (402)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 699999999999999999999999999999999999999999875 47899999999999987 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
++++++..
T Consensus 222 ~~~ev~~~ 229 (402)
T PRK09536 222 PPADVLTA 229 (402)
T ss_pred CHHHHhCc
Confidence 99988754
No 114
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=7.4e-36 Score=309.28 Aligned_cols=211 Identities=22% Similarity=0.319 Sum_probs=161.6
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe----ecCCCChHHHh----hccceeccc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV----DIRTLGLHTLR----SRLTIIPQV 268 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~----~~~~~~~~~~~----~~i~~v~Q~ 268 (602)
....++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...++ +.++|++|+
T Consensus 36 ~~~~l~~vsf~i~~G-ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 36 LVVGVANASLDIEEG-EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred CEEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 456899999999998 999999999999999999999999999999999996 56666655443 579999997
Q ss_pred chhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCc
Q psy3001 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGET 347 (602)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 347 (602)
+. ++. .. ++.+++.... ..... ......+..+.++.+++.+........
T Consensus 115 ~~-----------l~p------------~~------Tv~eNi~~~~~~~g~~-~~~~~~~a~e~le~vgL~~~~~~~~~~ 164 (382)
T TIGR03415 115 FA-----------LMP------------WL------TVEENVAFGLEMQGMP-EAERRKRVDEQLELVGLAQWADKKPGE 164 (382)
T ss_pred Cc-----------CCC------------CC------cHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 32 110 01 1111110000 00000 001112233344456665556666677
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
+| ||||||++|||||+.+|++|||||||++||+.++..+.+.+.++.+ ++|+|+|||+++++.. ||+|++|++|+
T Consensus 165 LS--gGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~ 242 (382)
T TIGR03415 165 LS--GGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGR 242 (382)
T ss_pred CC--HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 88 6999999999999999999999999999999999999999988753 7999999999999877 99999999999
Q ss_pred EEeecChhHHhhcchh
Q psy3001 425 VVEFDSPSVLMKNKAS 440 (602)
Q Consensus 425 i~~~g~~~~l~~~~~~ 440 (602)
+++.|++++++..+..
T Consensus 243 iv~~g~~~ei~~~p~~ 258 (382)
T TIGR03415 243 IIQHGTPEEIVLNPAN 258 (382)
T ss_pred EEEecCHHHHhhCcch
Confidence 9999999998765433
No 115
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-36 Score=304.30 Aligned_cols=207 Identities=20% Similarity=0.312 Sum_probs=158.1
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC------------------------CC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT------------------------LG 254 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~------------------------~~ 254 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.+... ..
T Consensus 21 ~~l~~vsl~i~~G-e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 21 KALDNVSVEINQG-EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred cceeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccch
Confidence 4799999999998 9999999999999999999999999999999999876531 13
Q ss_pred hHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHh
Q psy3001 255 LHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLE 333 (602)
Q Consensus 255 ~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 333 (602)
...+++.++|++|++..++ + . .++.+++.... ...... .....+..+.++
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l---------~-------------~------~tv~e~i~~~~~~~~~~~-~~~~~~~~~~l~ 150 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQL---------F-------------E------QTIEKDIIFGPVSMGVSK-EEAKKRAAKYIE 150 (305)
T ss_pred HHHHHhceEEEeeCccccc---------c-------------c------ccHHHHHHhhHHHcCCCH-HHHHHHHHHHHH
Confidence 4567889999999853221 1 0 01111110000 000000 011122333444
Q ss_pred hcccC-CcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccc
Q psy3001 334 SVSRS-PIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTI 411 (602)
Q Consensus 334 ~~~~~-~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i 411 (602)
.+++. .........+| ||||||++|||||+.+|++|||||||++||+.+...+.+.++++. .++|||+|||+++.+
T Consensus 151 ~~gL~~~~~~~~~~~LS--gGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~ 228 (305)
T PRK13651 151 LVGLDESYLQRSPFELS--GGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV 228 (305)
T ss_pred HcCCChhhhhCChhhCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHH
Confidence 55554 34556667788 699999999999999999999999999999999999999998864 479999999999998
Q ss_pred cc-CCeEEEEeCceEEeecChhHHhhc
Q psy3001 412 ID-SDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 412 ~~-~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
.. ||||++|++|++++.|++++++..
T Consensus 229 ~~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 229 LEWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 77 999999999999999999988754
No 116
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=4.8e-36 Score=305.48 Aligned_cols=206 Identities=22% Similarity=0.324 Sum_probs=156.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| +++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.++|+||++..
T Consensus 20 ~~~l~~vsl~i~~G-ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig~v~q~~~~------ 91 (306)
T PRK13537 20 KLVVDGLSFHVQRG-ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVGVVPQFDNL------ 91 (306)
T ss_pred eEEEecceEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEEEEeccCcC------
Confidence 45899999999998 999999999999999999999999999999999999987654 4578899999997421
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccc-cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. .. ++.+++.. ........ .....+..+.++.++...........+| +||||
T Consensus 92 -----~~------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 145 (306)
T PRK13537 92 -----DP------------DF------TVRENLLVFGRYFGLSA-AAARALVPPLLEFAKLENKADAKVGELS--GGMKR 145 (306)
T ss_pred -----CC------------CC------cHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCchHhcCchhhCC--HHHHH
Confidence 10 00 11111000 00000000 0001112222333333333344445666 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+++|++|+|||||++||+.++..+++.++++. +++|||++||+++++.. ||+|++|++|+++..|+++++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999875 47999999999999988 999999999999999999888
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
...
T Consensus 226 ~~~ 228 (306)
T PRK13537 226 IES 228 (306)
T ss_pred Hhc
Confidence 643
No 117
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.5e-36 Score=294.89 Aligned_cols=204 Identities=28% Similarity=0.435 Sum_probs=155.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC---hHHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~---~~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|++|++.
T Consensus 14 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~---- 88 (241)
T cd03256 14 KKALKDVSLSINPG-EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFN---- 88 (241)
T ss_pred cEEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCc----
Confidence 45899999999998 999999999999999999999999999999999999988766 4567889999999742
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccc---------hhHHHHHHHHHHHHHHhhcccCCcccccC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS---------NLQRFYVATSRQLKRLESVSRSPIYSHFG 345 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 345 (602)
++. ..+ +.+++...... .... .....+..+.++.++.........
T Consensus 89 -------~~~------------~~t------v~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~ 142 (241)
T cd03256 89 -------LIE------------RLS------VLENVLSGRLGRRSTWRSLFGLFP-KEEKQRALAALERVGLLDKAYQRA 142 (241)
T ss_pred -------ccc------------cCc------HHHHHHhhhcccchhhhhhcccCc-HHHHHHHHHHHHHcCChhhhCCCc
Confidence 110 001 00000000000 0000 001111222333444444445556
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
..+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|||++||+++.+.. ||++++|++
T Consensus 143 ~~LS--~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 220 (241)
T cd03256 143 DQLS--GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKD 220 (241)
T ss_pred ccCC--HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6777 699999999999999999999999999999999999999998874 37899999999999986 999999999
Q ss_pred ceEEeecChhHH
Q psy3001 423 GLVVEFDSPSVL 434 (602)
Q Consensus 423 G~i~~~g~~~~l 434 (602)
|++++.++++++
T Consensus 221 G~i~~~~~~~~~ 232 (241)
T cd03256 221 GRIVFDGPPAEL 232 (241)
T ss_pred CEEEeecCHHHh
Confidence 999999888775
No 118
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.5e-36 Score=291.31 Aligned_cols=197 Identities=23% Similarity=0.383 Sum_probs=147.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++|++|++..
T Consensus 13 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~------ 83 (213)
T cd03259 13 VRALDDLSLTVEPG-EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMVFQDYAL------ 83 (213)
T ss_pred eeeecceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEEcCchhh------
Confidence 35799999999998 9999999999999999999999999999999999999876543 46789999997431
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. .. ++.+++.... ...... .....+..+.++.++...........+| +||||
T Consensus 84 -----~~------------~~------tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~q 137 (213)
T cd03259 84 -----FP------------HL------TVAENIAFGLKLRGVPK-AEIRARVRELLELVGLEGLLNRYPHELS--GGQQQ 137 (213)
T ss_pred -----cc------------CC------cHHHHHHhHHHHcCCCH-HHHHHHHHHHHHHcCChhhhhcChhhCC--HHHHH
Confidence 10 00 1111100000 000000 0001112222334444444445556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|++|||||+.+|++|||||||++||+.+...+.+.++++. .++|||++||+++.+.. ||++++|++|++++.|
T Consensus 138 rl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 138 RVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999998864 37899999999999887 9999999999997654
No 119
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-36 Score=310.97 Aligned_cols=206 Identities=20% Similarity=0.277 Sum_probs=158.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...++. ++.++|++|++.
T Consensus 16 ~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~~v~Q~~~------- 85 (369)
T PRK11000 16 VVISKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGMVFQSYA------- 85 (369)
T ss_pred eEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEEEEeCCcc-------
Confidence 35799999999998 99999999999999999999999999999999999999776553 468999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. . .++.+++..... ..... .....+..+.++.++...........|| |||||
T Consensus 86 ----l~~------------~------~tv~eni~~~~~~~~~~~-~~~~~~~~~~l~~lgL~~~~~~~~~~LS--gGq~Q 140 (369)
T PRK11000 86 ----LYP------------H------LSVAENMSFGLKLAGAKK-EEINQRVNQVAEVLQLAHLLDRKPKALS--GGQRQ 140 (369)
T ss_pred ----cCC------------C------CCHHHHHHhHHhhcCCCH-HHHHHHHHHHHHHcCChhhhcCChhhCC--HHHHH
Confidence 110 0 011111110000 00000 0111122333344555555556667788 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 141 RvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999988643 7899999999999887 99999999999999999998
Q ss_pred Hhhcc
Q psy3001 434 LMKNK 438 (602)
Q Consensus 434 l~~~~ 438 (602)
++..+
T Consensus 221 i~~~p 225 (369)
T PRK11000 221 LYHYP 225 (369)
T ss_pred HHhCc
Confidence 87653
No 120
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=4e-36 Score=292.37 Aligned_cols=194 Identities=25% Similarity=0.338 Sum_probs=146.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++.
T Consensus 17 ~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~----- 90 (216)
T TIGR00960 17 PALDNLNFHITKG-EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHR----- 90 (216)
T ss_pred eEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcc-----
Confidence 4799999999998 99999999999999999999999999999999999998766543 46789999999732
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++. .. ++.+++.... ...... .....+..+.++.++..+........+| |||
T Consensus 91 ------~~~------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~ 143 (216)
T TIGR00960 91 ------LLS------------DR------TVYDNVAFPLRIIGVPP-RDANERVSAALEKVGLEGKAHALPMQLS--GGE 143 (216)
T ss_pred ------ccc------------cc------cHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCChhhhhCChhhCC--HHH
Confidence 110 00 1111100000 000000 0011122233334444444455556777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|+|||+++.+.. ||++++|++|++
T Consensus 144 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 144 QQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999998864 47899999999999987 999999999974
No 121
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.6e-36 Score=299.05 Aligned_cols=208 Identities=28% Similarity=0.437 Sum_probs=157.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH----hhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~----~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++|++|++.
T Consensus 37 ~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--- 112 (269)
T cd03294 37 TVGVNDVSLDVREG-EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA--- 112 (269)
T ss_pred ceEeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc---
Confidence 45799999999998 9999999999999999999999999999999999999887665443 467999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. .. ++.+++.... ...... .....+..+.++.++..+........+| +
T Consensus 113 --------~~~------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~ 163 (269)
T cd03294 113 --------LLP------------HR------TVLENVAFGLEVQGVPR-AEREERAAEALELVGLEGWEHKYPDELS--G 163 (269)
T ss_pred --------cCC------------CC------cHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCHhHhhCCcccCC--H
Confidence 110 00 1111100000 000000 0011122233334444444455566777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.++++. + ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 164 Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g 243 (269)
T cd03294 164 GMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVG 243 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998864 3 7899999999999877 9999999999999999
Q ss_pred ChhHHhhcc
Q psy3001 430 SPSVLMKNK 438 (602)
Q Consensus 430 ~~~~l~~~~ 438 (602)
++++++...
T Consensus 244 ~~~~~~~~~ 252 (269)
T cd03294 244 TPEEILTNP 252 (269)
T ss_pred CHHHHHhCc
Confidence 998887643
No 122
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-35 Score=310.53 Aligned_cols=209 Identities=28% Similarity=0.429 Sum_probs=161.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH----hhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~----~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..++...+ ++.++|++|++.
T Consensus 41 ~~~L~~isl~i~~G-ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~--- 116 (400)
T PRK10070 41 SLGVKDASLAIEEG-EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA--- 116 (400)
T ss_pred eEEEEeEEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc---
Confidence 35799999999998 9999999999999999999999999999999999999988776543 357999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. +.++.+++.... ...... .....+..+.++.++...........+| |
T Consensus 117 --------l~~------------------~~Tv~enl~~~~~~~~~~~-~~~~~~~~e~L~~~gL~~~~~~~~~~LS--g 167 (400)
T PRK10070 117 --------LMP------------------HMTVLDNTAFGMELAGINA-EERREKALDALRQVGLENYAHSYPDELS--G 167 (400)
T ss_pred --------CCC------------------CCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCChhhhcCcccCC--H
Confidence 110 011111110000 000000 0111222334445555555566677788 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.++..+.+.|+++. .++|+|++||+++++.. ||+|++|++|+++..|
T Consensus 168 Gq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g 247 (400)
T PRK10070 168 GMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVG 247 (400)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998864 37899999999999877 9999999999999999
Q ss_pred ChhHHhhcch
Q psy3001 430 SPSVLMKNKA 439 (602)
Q Consensus 430 ~~~~l~~~~~ 439 (602)
++++++..+.
T Consensus 248 ~~~~l~~~~~ 257 (400)
T PRK10070 248 TPDEILNNPA 257 (400)
T ss_pred CHHHHHhCcc
Confidence 9998876543
No 123
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-36 Score=301.98 Aligned_cols=207 Identities=24% Similarity=0.376 Sum_probs=158.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC----ChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL----GLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~----~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... +...+++.++|++|++...+
T Consensus 21 ~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l- 98 (286)
T PRK13646 21 QAIHDVNTEFEQG-KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL- 98 (286)
T ss_pred CceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhcc-
Confidence 4799999999998 99999999999999999999999999999999999998653 34568889999999853211
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~ 352 (602)
+ .. ++.+++... ....... .....+..+.+..++.. .........+| +
T Consensus 99 --------~-------------~~------tv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~~LS--g 148 (286)
T PRK13646 99 --------F-------------ED------TVEREIIFGPKNFKMNL-DEVKNYAHRLLMDLGFSRDVMSQSPFQMS--G 148 (286)
T ss_pred --------c-------------hh------hHHHHHHhhHHHcCCCH-HHHHHHHHHHHHHcCCChhhhhCCcccCC--H
Confidence 1 00 111110000 0000000 00111222333345543 34455667788 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.+..++.+.++++. .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 149 Gq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g 228 (286)
T PRK13646 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998864 37999999999999876 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
++++++..
T Consensus 229 ~~~~~~~~ 236 (286)
T PRK13646 229 SPKELFKD 236 (286)
T ss_pred CHHHHHhC
Confidence 98887654
No 124
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=293.67 Aligned_cols=206 Identities=24% Similarity=0.362 Sum_probs=153.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++|++|++.
T Consensus 15 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~------- 84 (239)
T cd03296 15 FVALDDVSLDIPSG-ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVFQHYA------- 84 (239)
T ss_pred EEeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEecCCc-------
Confidence 45799999999998 9999999999999999999999999999999999998876543 2568999999742
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchh---HHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNL---QRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. ..+ +.+++.... .... ........+..+.++.++...........+| +|
T Consensus 85 ----~~~------------~~t------v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G 140 (239)
T cd03296 85 ----LFR------------HMT------VFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLS--GG 140 (239)
T ss_pred ----ccC------------CCC------HHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCC--HH
Confidence 110 001 111100000 0000 0000001111222333444333445556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 141 ~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (239)
T cd03296 141 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220 (239)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecC
Confidence 99999999999999999999999999999999999999988743 6899999999999877 99999999999999999
Q ss_pred hhHHhhc
Q psy3001 431 PSVLMKN 437 (602)
Q Consensus 431 ~~~l~~~ 437 (602)
++++...
T Consensus 221 ~~~~~~~ 227 (239)
T cd03296 221 PDEVYDH 227 (239)
T ss_pred HHHHhcC
Confidence 8887653
No 125
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=5.4e-36 Score=292.38 Aligned_cols=203 Identities=23% Similarity=0.310 Sum_probs=152.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++|++|++.
T Consensus 15 ~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~------- 85 (220)
T cd03263 15 KPAVDDLSLNVYKG-EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQFDA------- 85 (220)
T ss_pred ceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEEecCcCC-------
Confidence 35899999999998 99999999999999999999999999999999999988654 3566788999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++... ....... .....+..+.++.++..+........+| +||||
T Consensus 86 ----~~~------------~~------tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 140 (220)
T cd03263 86 ----LFD------------EL------TVREHLRFYARLKGLPK-SEIKEEVELLLRVLGLTDKANKRARTLS--GGMKR 140 (220)
T ss_pred ----ccc------------cC------CHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCHHHHhChhhhCC--HHHHH
Confidence 110 00 111110000 0000000 0001111222223333333344455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.++++++
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999999999999999987667999999999999987 999999999999998887653
No 126
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.7e-36 Score=293.04 Aligned_cols=202 Identities=26% Similarity=0.364 Sum_probs=152.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc-----CCCCceEEECCeecCCCC--hHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII-----EPADGTIIIDGVDIRTLG--LHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~-----~~~~G~I~i~g~~~~~~~--~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|++ +|++|+|.++|.++...+ ...+++.++|++|++.
T Consensus 14 ~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~- 91 (227)
T cd03260 14 HALKDISLDIPKG-EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN- 91 (227)
T ss_pred eeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch-
Confidence 5799999999998 999999999999999999999999 999999999999987766 5667889999999742
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCccccc--CCcC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHF--GETV 348 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~l 348 (602)
++ .. ++.+++.... ............+..+.++.++..+..... ...+
T Consensus 92 ----------~~-------------~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 142 (227)
T cd03260 92 ----------PF-------------PG------SIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGL 142 (227)
T ss_pred ----------hc-------------cc------cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccC
Confidence 11 00 1111100000 000000000011122223333443333333 4667
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
| ||||||++|||||+.+|++|||||||++||+.++..+.+.|++..+.+|+|++||+++.+.. ||++++|++|++++
T Consensus 143 S--gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 220 (227)
T cd03260 143 S--GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE 220 (227)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 7 69999999999999999999999999999999999999999987545899999999999887 99999999999999
Q ss_pred ecChhH
Q psy3001 428 FDSPSV 433 (602)
Q Consensus 428 ~g~~~~ 433 (602)
.|++++
T Consensus 221 ~g~~~~ 226 (227)
T cd03260 221 FGPTEQ 226 (227)
T ss_pred ecCccc
Confidence 887654
No 127
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2e-36 Score=272.92 Aligned_cols=201 Identities=25% Similarity=0.350 Sum_probs=151.3
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++||||...+| +++||.|+|||||||++++|++++.|++|.|.+||.|+.. .+..+|++||+++.+.
T Consensus 17 AvrdVSF~ae~G-ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGVl~~e~---------- 84 (245)
T COG4555 17 AVRDVSFEAEEG-EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLFGER---------- 84 (245)
T ss_pred hhhheeEEeccc-eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcceecCCc----------
Confidence 689999999998 9999999999999999999999999999999999999876 5678899999988431
Q ss_pred ceeEeeecccceeeeccccceeeccccccccc-ccccchhH--HHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII-TPFCSNLQ--RFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+.+ ..-+.++++. +.....+. +..++..+..+. +.........-..+| -|+||
T Consensus 85 glY-------------------~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~---l~l~~~~~rRv~~~S--~G~kq 140 (245)
T COG4555 85 GLY-------------------ARLTARENLKYFARLNGLSRKEIKARIAELSKR---LQLLEYLDRRVGEFS--TGMKQ 140 (245)
T ss_pred Chh-------------------hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---hChHHHHHHHHhhhc--hhhHH
Confidence 110 0001111100 00000000 011111222221 222222223333455 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
||+|||||+++|++++||||||+||..+...+.+.+++.+. +++||+.||.++++.. ||+|+++++|+++..|+.+.+
T Consensus 141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l 220 (245)
T COG4555 141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220 (245)
T ss_pred HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHH
Confidence 99999999999999999999999999999999999988765 8999999999999997 999999999999999998887
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 221 ~~ 222 (245)
T COG4555 221 DA 222 (245)
T ss_pred HH
Confidence 54
No 128
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-36 Score=281.19 Aligned_cols=224 Identities=26% Similarity=0.359 Sum_probs=171.7
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFV 274 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~ 274 (602)
.+-..++||||+..+| ++++|+|||||||||++++|+|+|+|++|+|.++|.++..+++..+ +..|+--+|.+.
T Consensus 15 GGl~Al~~Vsl~v~~G-ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r---- 89 (250)
T COG0411 15 GGLTAVNDVSLEVRPG-EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITR---- 89 (250)
T ss_pred CCEEEEeceeEEEcCC-eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccccc----
Confidence 3567999999999998 9999999999999999999999999999999999999999998875 456777888632
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+|........+..-..... ..... ...............+..+.++.+++.+.......+|| +||
T Consensus 90 -------lF~~lTVlENv~va~~~~~----~~~~~--l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~Ls--yG~ 154 (250)
T COG0411 90 -------LFPGLTVLENVAVGAHARL----GLSGL--LGRPRARKEEREARERARELLEFVGLGELADRPAGNLS--YGQ 154 (250)
T ss_pred -------ccCCCcHHHHHHHHhhhhh----hhhhh--hccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCC--hhH
Confidence 2211000000000000000 00000 00000111223344455566677888777777777888 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
|+|+.|||||+.+|++|+||||.+++.+.....+.+.++++.+ +.||++|.||+..+.. ||||+||+.|++++.|+|
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence 9999999999999999999999999999999999999999874 4999999999999999 999999999999999999
Q ss_pred hHHhhcch
Q psy3001 432 SVLMKNKA 439 (602)
Q Consensus 432 ~~l~~~~~ 439 (602)
+++.+++.
T Consensus 235 ~eV~~dp~ 242 (250)
T COG0411 235 EEVRNNPR 242 (250)
T ss_pred HHHhcCHH
Confidence 99987643
No 129
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=1.9e-35 Score=291.86 Aligned_cols=207 Identities=33% Similarity=0.510 Sum_probs=157.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 15 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~------- 86 (237)
T cd03252 15 PVILDNISLRIKPG-EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENV------- 86 (237)
T ss_pred ccceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCch-------
Confidence 34799999999998 9999999999999999999999999999999999999887777778889999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~ 352 (602)
++ ..+ +.+++.... ............ ...+.+..+ +..........++| +
T Consensus 87 ----~~-------------~~t------v~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LS--g 141 (237)
T cd03252 87 ----LF-------------NRS------IRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLS--G 141 (237)
T ss_pred ----hc-------------cch------HHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCC--H
Confidence 11 001 111000000 000001000000 001111111 12222344556777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.++++
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~ 221 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHD 221 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999999887789999999999998669999999999999999988
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
+++..
T Consensus 222 ~~~~~ 226 (237)
T cd03252 222 ELLAE 226 (237)
T ss_pred HHHhc
Confidence 87765
No 130
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=309.11 Aligned_cols=208 Identities=24% Similarity=0.369 Sum_probs=160.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+.+|++|+|.++|.++...++ .++.++|++|++.
T Consensus 32 ~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~vfQ~~~------- 101 (377)
T PRK11607 32 QHAVDDVSLTIYKG-EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINMMFQSYA------- 101 (377)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCCc-------
Confidence 34788899999888 9999999999999999999999999999999999999987654 4678999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. ..++.+++..... .... ......+..+.++.++..+........|| |||||
T Consensus 102 ----lfp------------------~ltv~eNi~~~l~~~~~~-~~~~~~~v~~~l~~l~L~~~~~~~~~~LS--gGq~Q 156 (377)
T PRK11607 102 ----LFP------------------HMTVEQNIAFGLKQDKLP-KAEIASRVNEMLGLVHMQEFAKRKPHQLS--GGQRQ 156 (377)
T ss_pred ----cCC------------------CCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCchhhcCChhhCC--HHHHH
Confidence 220 0111111111000 0000 00111222333445555566666777888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++|+|||||++||+.++..+.+.++++. .+.|+|+|||+++++.. ||++++|++|++++.|++++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 9999999999999999999999999999999998887753 36899999999999877 99999999999999999999
Q ss_pred Hhhcchh
Q psy3001 434 LMKNKAS 440 (602)
Q Consensus 434 l~~~~~~ 440 (602)
++..+..
T Consensus 237 ~~~~p~~ 243 (377)
T PRK11607 237 IYEHPTT 243 (377)
T ss_pred HHhCCcc
Confidence 8876443
No 131
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-35 Score=293.79 Aligned_cols=206 Identities=24% Similarity=0.396 Sum_probs=157.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 15 ~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~-------- 85 (242)
T cd03295 15 KAVNNLNLEIAKG-EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIG-------- 85 (242)
T ss_pred eEeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCcc--------
Confidence 4799999999998 9999999999999999999999999999999999999987777777889999999732
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCC--cccccCCcCCCChhhH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSP--IYSHFGETVTGNVGQR 355 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~lsgs~Gq~ 355 (602)
++. ..+ +.+++... ...... ......+..+.++.++..+ ........+| +|||
T Consensus 86 ---~~~------------~~t------v~e~l~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS--~G~~ 141 (242)
T cd03295 86 ---LFP------------HMT------VEENIALVPKLLKWP-KEKIRERADELLALVGLDPAEFADRYPHELS--GGQQ 141 (242)
T ss_pred ---ccC------------CCc------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCCcHHHHhcChhhCC--HHHH
Confidence 110 001 11110000 000000 0001112223333444433 3445556677 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.++++
T Consensus 142 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 142 QRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999988743 7899999999999877 9999999999999999888
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
++...
T Consensus 222 ~~~~~ 226 (242)
T cd03295 222 EILRS 226 (242)
T ss_pred HHHcC
Confidence 77543
No 132
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-35 Score=300.91 Aligned_cols=207 Identities=20% Similarity=0.345 Sum_probs=157.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC----CChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT----LGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~----~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....+++.++|++|++..++
T Consensus 20 ~~l~~vsl~i~~G-e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l- 97 (288)
T PRK13643 20 RALFDIDLEVKKG-SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL- 97 (288)
T ss_pred cceeeeEEEEcCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc-
Confidence 4799999999998 9999999999999999999999999999999999999853 335678899999999853211
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~ 352 (602)
+ .. ++.+.+... ....... .....+..+.++.++.. .........+| +
T Consensus 98 --------~-------------~~------tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LS--g 147 (288)
T PRK13643 98 --------F-------------EE------TVLKDVAFGPQNFGIPK-EKAEKIAAEKLEMVGLADEFWEKSPFELS--G 147 (288)
T ss_pred --------c-------------cc------hHHHHHHhHHHHcCCCH-HHHHHHHHHHHHHcCCChhhccCCcccCC--H
Confidence 1 00 111110000 0000000 00111222333344443 23455566777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.++++. ++.|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~ 227 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998864 47899999999999976 99999999999999999
Q ss_pred hhHHhhc
Q psy3001 431 PSVLMKN 437 (602)
Q Consensus 431 ~~~l~~~ 437 (602)
+++++..
T Consensus 228 ~~~~~~~ 234 (288)
T PRK13643 228 PSDVFQE 234 (288)
T ss_pred HHHHHcC
Confidence 9988653
No 133
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-35 Score=292.63 Aligned_cols=203 Identities=29% Similarity=0.430 Sum_probs=158.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 16 ~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~------- 87 (241)
T PRK14250 16 KEILKDISVKFEGG-AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPH------- 87 (241)
T ss_pred eeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCch-------
Confidence 34799999999998 9999999999999999999999999999999999999987777788889999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQR 355 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~ 355 (602)
++ ..+ +.+++... ...... ..+..+.++.++.. .........+| +|||
T Consensus 88 ----~~-------------~~t------v~e~l~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LS--~G~~ 137 (241)
T PRK14250 88 ----LF-------------EGT------VKDNIEYGPMLKGEK-----NVDVEYYLSIVGLNKEYATRDVKNLS--GGEA 137 (241)
T ss_pred ----hc-------------hhh------HHHHHhcchhhcCcH-----HHHHHHHHHHcCCCHHHhhCCcccCC--HHHH
Confidence 11 101 11110000 000000 01112222233332 23344556677 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.++++
T Consensus 138 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 138 QRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTY 217 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999988643 7899999999999887 9999999999999999998
Q ss_pred HHhhcc
Q psy3001 433 VLMKNK 438 (602)
Q Consensus 433 ~l~~~~ 438 (602)
+++..+
T Consensus 218 ~~~~~~ 223 (241)
T PRK14250 218 DFFTNP 223 (241)
T ss_pred HHhcCC
Confidence 887643
No 134
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-35 Score=290.05 Aligned_cols=202 Identities=23% Similarity=0.300 Sum_probs=151.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|++|++..
T Consensus 13 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~------ 84 (220)
T cd03265 13 FEAVRGVSFRVRRG-EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDLSV------ 84 (220)
T ss_pred EEeeeceeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEEecCCccc------
Confidence 35799999999998 9999999999999999999999999999999999998765 335667889999997421
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. .. ++.+++... ...... ......+..+.++.++..+........+| +||||
T Consensus 85 -----~~------------~~------tv~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 138 (220)
T cd03265 85 -----DD------------EL------TGWENLYIHARLYGVP-GAERRERIDELLDFVGLLEAADRLVKTYS--GGMRR 138 (220)
T ss_pred -----cc------------cC------cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHhhCChhhCC--HHHHH
Confidence 10 00 011110000 000000 00011122223334444333444556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+.. ||++++|++|++++.+++++
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999999999999999999999999998864 3 6899999999999987 99999999999998887655
No 135
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-35 Score=300.96 Aligned_cols=205 Identities=23% Similarity=0.332 Sum_probs=157.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC----CChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT----LGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~----~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..++||||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|+++.. .....+++.++|++|++...+
T Consensus 21 ~~L~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l- 98 (290)
T PRK13634 21 RALYDVNVSIPSG-SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL- 98 (290)
T ss_pred cceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhh-
Confidence 4799999999998 9999999999999999999999999999999999999863 245567889999999853211
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTG 350 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsg 350 (602)
+ . .++.+++... ......... .+..+.++.++.. .........+|
T Consensus 99 --------~-------------~------~tv~eni~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~~LS- 147 (290)
T PRK13634 99 --------F-------------E------ETVEKDICFGPMNFGVSEEDAK---QKAREMIELVGLPEELLARSPFELS- 147 (290)
T ss_pred --------h-------------h------hhHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHCCCChhhhhCCcccCC-
Confidence 1 0 0111110000 000001111 1222333344543 33455566777
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
+|||||++|||||+.+|++|||||||++||+.+...+.+.++++.+ +.|||++||+++.+.. ||||++|++|++++
T Consensus 148 -gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 148 -GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL 226 (290)
T ss_pred -HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 6999999999999999999999999999999999999999988743 7899999999999977 99999999999999
Q ss_pred ecChhHHhhc
Q psy3001 428 FDSPSVLMKN 437 (602)
Q Consensus 428 ~g~~~~l~~~ 437 (602)
.|++++++..
T Consensus 227 ~g~~~~~~~~ 236 (290)
T PRK13634 227 QGTPREIFAD 236 (290)
T ss_pred ECCHHHHhcC
Confidence 9998887654
No 136
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-35 Score=292.09 Aligned_cols=205 Identities=30% Similarity=0.444 Sum_probs=155.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. ..++.++|++|++.
T Consensus 19 ~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~----- 92 (233)
T cd03258 19 TALKDVSLSVPKG-EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFN----- 92 (233)
T ss_pred eeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcc-----
Confidence 5899999999998 99999999999999999999999999999999999998776543 34788999999732
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++. ..+ +.+++... ....... .....+..+.++.++...........+| +||
T Consensus 93 ------~~~------------~~t------~~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~ 145 (233)
T cd03258 93 ------LLS------------SRT------VFENVALPLEIAGVPK-AEIEERVLELLELVGLEDKADAYPAQLS--GGQ 145 (233)
T ss_pred ------cCC------------CCc------HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHCCChhhhhcChhhCC--HHH
Confidence 110 001 11110000 0000000 0011112222334444444444556677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
|||++|||||+.+|+++||||||++||+.+...+.+.++++. + ++|+|++||+++.+.. ||++++|++|++++.+++
T Consensus 146 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (233)
T cd03258 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTV 225 (233)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999998864 3 7899999999999987 999999999999999988
Q ss_pred hHHhh
Q psy3001 432 SVLMK 436 (602)
Q Consensus 432 ~~l~~ 436 (602)
+++..
T Consensus 226 ~~~~~ 230 (233)
T cd03258 226 EEVFA 230 (233)
T ss_pred HHHhc
Confidence 77654
No 137
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=9.7e-36 Score=288.61 Aligned_cols=195 Identities=28% Similarity=0.407 Sum_probs=147.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+
T Consensus 14 ~~il~~vs~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~---- 88 (211)
T cd03225 14 RPALDDISLTIKKG-EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQF---- 88 (211)
T ss_pred eeeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhc----
Confidence 35799999999998 9999999999999999999999999999999999999987777778899999999742100
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+ .. ++.+++.... ...... .....+..+.++.++...........+| +||||
T Consensus 89 -----~-------------~~------t~~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~q 141 (211)
T cd03225 89 -----F-------------GP------TVEEEVAFGLENLGLPE-EEIEERVEEALELVGLEGLRDRSPFTLS--GGQKQ 141 (211)
T ss_pred -----C-------------CC------cHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCcHhhhcCCcccCC--HHHHH
Confidence 0 00 1111100000 000000 0001111222333333333445556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
|++|||||+.+|++|||||||++||+.++..+.+.++++.+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 142 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 142 RVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999988753 7899999999999988 99999999884
No 138
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.3e-35 Score=297.24 Aligned_cols=206 Identities=28% Similarity=0.392 Sum_probs=160.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+
T Consensus 20 ~~~l~~vsl~i~~G-e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~---- 94 (279)
T PRK13635 20 TYALKDVSFSVYEG-EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQF---- 94 (279)
T ss_pred ccceeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhc----
Confidence 34899999999998 9999999999999999999999999999999999999988777778889999999842111
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+ .. ++.+++... ......... .+..+.+..++..+........+| +||
T Consensus 95 -----~-------------~~------tv~enl~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~LS--~G~ 145 (279)
T PRK13635 95 -----V-------------GA------TVQDDVAFGLENIGVPREEMV---ERVDQALRQVGMEDFLNREPHRLS--GGQ 145 (279)
T ss_pred -----c-------------cc------cHHHHHhhhHhhCCCCHHHHH---HHHHHHHHHcCChhhhhCCcccCC--HHH
Confidence 1 00 111110000 000001111 112222334444445555666777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+..||+++++++|++++.|+.+
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (279)
T PRK13635 146 KQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPE 225 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999998753 78999999999998779999999999999999988
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
++...
T Consensus 226 ~~~~~ 230 (279)
T PRK13635 226 EIFKS 230 (279)
T ss_pred HHhcC
Confidence 87654
No 139
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-35 Score=298.85 Aligned_cols=208 Identities=24% Similarity=0.324 Sum_probs=159.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC--CCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| |+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+++.++|++|++...+
T Consensus 19 ~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~-- 95 (283)
T PRK13636 19 THALKGININIKKG-EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL-- 95 (283)
T ss_pred CeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh--
Confidence 35899999999998 999999999999999999999999999999999999984 2345678889999999742111
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+ .. ++.+++.... ..... ......+....++.++...........+| +||
T Consensus 96 -------~-------------~~------tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gL~~~~~~~~~~LS--~G~ 146 (283)
T PRK13636 96 -------F-------------SA------SVYQDVSFGAVNLKLP-EDEVRKRVDNALKRTGIEHLKDKPTHCLS--FGQ 146 (283)
T ss_pred -------c-------------cc------cHHHHHHhHHHHcCCC-HHHHHHHHHHHHHHCCChhhhhCCcccCC--HHH
Confidence 1 00 1111110000 00000 00011122233344555555556667777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|||++||+++.+.. ||++++|++|++++.|++
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~ 226 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988753 7899999999999986 999999999999999999
Q ss_pred hHHhhc
Q psy3001 432 SVLMKN 437 (602)
Q Consensus 432 ~~l~~~ 437 (602)
+++...
T Consensus 227 ~~~~~~ 232 (283)
T PRK13636 227 KEVFAE 232 (283)
T ss_pred HHHhcC
Confidence 887654
No 140
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-35 Score=297.49 Aligned_cols=207 Identities=19% Similarity=0.301 Sum_probs=159.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...
T Consensus 18 ~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~------ 90 (277)
T PRK13652 18 EALNNINFIAPRN-SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQ------ 90 (277)
T ss_pred ceeeEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccc------
Confidence 4799999999998 999999999999999999999999999999999999988777778888999999974211
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
++ . .++.+++... ....... .....+..+.++.++..+........+| +|||||
T Consensus 91 ---~~-------------~------~tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~Gq~qr 145 (277)
T PRK13652 91 ---IF-------------S------PTVEQDIAFGPINLGLDE-ETVAHRVSSALHMLGLEELRDRVPHHLS--GGEKKR 145 (277)
T ss_pred ---cc-------------c------ccHHHHHHhHHHHcCCCH-HHHHHHHHHHHHHCCChhHhcCCcccCC--HHHHHH
Confidence 11 0 0111110000 0000000 0001112223334444444555566777 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|||||||++||+.+...+.+.++++.+ +.|+|++||+++.+.. ||++++|++|+++..|+++++
T Consensus 146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999988653 7899999999999976 999999999999999999888
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
+..
T Consensus 226 ~~~ 228 (277)
T PRK13652 226 FLQ 228 (277)
T ss_pred hcC
Confidence 654
No 141
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.7e-35 Score=304.44 Aligned_cols=206 Identities=23% Similarity=0.339 Sum_probs=154.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| +++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.++|+||++....
T Consensus 54 ~~~l~~is~~i~~G-ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig~v~q~~~~~~---- 127 (340)
T PRK13536 54 KAVVNGLSFTVASG-ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQFDNLDL---- 127 (340)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEEEEeCCccCCC----
Confidence 35788888888887 999999999999999999999999999999999999987643 467889999999732110
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccc-cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
.. ++.+++.. ........ .....+..+.++.++...........+| +||||
T Consensus 128 -------------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~ll~~~~L~~~~~~~~~~LS--~G~kq 179 (340)
T PRK13536 128 -------------------EF------TVRENLLVFGRYFGMST-REIEAVIPSLLEFARLESKADARVSDLS--GGMKR 179 (340)
T ss_pred -------------------CC------cHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCchhhCCChhhCC--HHHHH
Confidence 00 01111000 00000000 0000111122233344333444455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+++|++|||||||++||+.++..+++.|+++. +++|||++||+++++.. ||+|++|++|+++..|+++++
T Consensus 180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999998874 47999999999999988 999999999999999999887
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
...
T Consensus 260 ~~~ 262 (340)
T PRK13536 260 IDE 262 (340)
T ss_pred Hhh
Confidence 643
No 142
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.9e-35 Score=292.99 Aligned_cols=211 Identities=28% Similarity=0.398 Sum_probs=153.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh---HHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~---~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++|++|++..
T Consensus 15 ~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~--- 90 (243)
T TIGR02315 15 KQALKNINLNINPG-EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL--- 90 (243)
T ss_pred cceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcc---
Confidence 34799999999998 9999999999999999999999999999999999999876654 3467889999997421
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchh-HH-HHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL-QR-FYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+. ..+...+-.............. .. ......+..+.++.++...........+| +
T Consensus 91 --------~~------------~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--g 148 (243)
T TIGR02315 91 --------IE------------RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLS--G 148 (243)
T ss_pred --------cc------------cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCC--H
Confidence 10 0000000000000000000000 00 00011122222333343333445556777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++.. + ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998864 3 6899999999999977 9999999999999999
Q ss_pred ChhHH
Q psy3001 430 SPSVL 434 (602)
Q Consensus 430 ~~~~l 434 (602)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 88775
No 143
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=1.3e-35 Score=286.35 Aligned_cols=190 Identities=24% Similarity=0.397 Sum_probs=145.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..+++.++|++|++...+
T Consensus 14 ~~l~~v~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~----- 84 (205)
T cd03226 14 EILDDLSLDLYAG-EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQL----- 84 (205)
T ss_pred ceeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhh-----
Confidence 4799999999998 9999999999999999999999999999999999998753 456778999999742110
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+ .. ++.+++...... .. ....+..+.++.++..+........+| +|||||+
T Consensus 85 ----~-------------~~------tv~e~l~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrv 135 (205)
T cd03226 85 ----F-------------TD------SVREELLLGLKE-LD---AGNEQAETVLKDLDLYALKERHPLSLS--GGQKQRL 135 (205)
T ss_pred ----h-------------hc------cHHHHHhhhhhh-cC---ccHHHHHHHHHHcCCchhcCCCchhCC--HHHHHHH
Confidence 0 00 111111000000 00 000122233334444444555566777 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
+|||||+.+|++|+|||||++||+.+.+.+.+.+++. .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999999887 457899999999999987 9999999999874
No 144
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=2.9e-35 Score=290.16 Aligned_cols=205 Identities=26% Similarity=0.341 Sum_probs=154.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... ++.++|++|++...+
T Consensus 14 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~~~q~~~~~~---- 87 (236)
T TIGR03864 14 RRALDDVSFTVRPG-EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGVVFQQPTLDL---- 87 (236)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEEeCCCCCCcc----
Confidence 35799999999998 999999999999999999999999999999999999987665433 458999999732110
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
..+. .+++... ....... .....+..+.++.++..+........+| +||||
T Consensus 88 -------------------~~t~------~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS--~G~~q 139 (236)
T TIGR03864 88 -------------------DLSV------RQNLRYHAALHGLSR-AEARERIAALLARLGLAERADDKVRELN--GGHRR 139 (236)
T ss_pred -------------------cCcH------HHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCChhhhcCChhhCC--HHHHH
Confidence 1111 1100000 0000000 0011112223334444444455556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+.+|+++||||||++||+.+.+.+.+.++++. .++|+|++||+++.+..||++++|++|++++.++++++
T Consensus 140 rl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (236)
T TIGR03864 140 RVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999998875 37899999999999977999999999999999988777
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 220 ~~ 221 (236)
T TIGR03864 220 RG 221 (236)
T ss_pred HH
Confidence 54
No 145
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.6e-35 Score=294.88 Aligned_cols=208 Identities=23% Similarity=0.356 Sum_probs=158.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||.+.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+.
T Consensus 23 ~~l~~isl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~---- 97 (269)
T PRK13648 23 FTLKDVSFNIPKG-QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFV---- 97 (269)
T ss_pred cceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcc----
Confidence 4799999999998 99999999999999999999999999999999999999887777888999999998532110
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
..+...+-.. .. ........... .+..+.++.++..+........+| +|||||+
T Consensus 98 ------------------~~~v~~~~~~-~~--~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrl 151 (269)
T PRK13648 98 ------------------GSIVKYDVAF-GL--ENHAVPYDEMH---RRVSEALKQVDMLERADYEPNALS--GGQKQRV 151 (269)
T ss_pred ------------------cccHHHHHHh-hH--HhcCCCHHHHH---HHHHHHHHHcCCchhhhCCcccCC--HHHHHHH
Confidence 0000000000 00 00000000111 111222334444444455566777 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
+||||++.+|++|||||||++||+.+...+.+.+++..+ ++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 152 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 152 AIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999999988643 689999999999987799999999999999999888765
Q ss_pred c
Q psy3001 437 N 437 (602)
Q Consensus 437 ~ 437 (602)
.
T Consensus 232 ~ 232 (269)
T PRK13648 232 H 232 (269)
T ss_pred C
Confidence 4
No 146
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.6e-35 Score=287.96 Aligned_cols=204 Identities=24% Similarity=0.394 Sum_probs=152.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.... ++.++|++|++.
T Consensus 13 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 85 (222)
T cd03224 13 SQILFGVSLTVPEG-EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRR------ 85 (222)
T ss_pred eeEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccc------
Confidence 35799999999998 9999999999999999999999999999999999999887776554 567999999742
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
++. ..+ +.+++... ...............++.+. ............+| +|||
T Consensus 86 -----~~~------------~~t------~~~~l~~~~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~~~~LS--~G~~ 138 (222)
T cd03224 86 -----IFP------------ELT------VEENLLLGAYARRRAKRKARLERVYELFP--RLKERRKQLAGTLS--GGEQ 138 (222)
T ss_pred -----cCC------------CCc------HHHHHHHHhhhcCchhHHHHHHHHHHHHH--hhhhhhhCchhhCC--HHHH
Confidence 110 001 11100000 00000000111111122111 11222344455677 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|+|||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.+++++
T Consensus 139 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (222)
T cd03224 139 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218 (222)
T ss_pred HHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHH
Confidence 99999999999999999999999999999999999998875 47899999999999887 99999999999999888776
Q ss_pred Hh
Q psy3001 434 LM 435 (602)
Q Consensus 434 l~ 435 (602)
+.
T Consensus 219 ~~ 220 (222)
T cd03224 219 LL 220 (222)
T ss_pred Hh
Confidence 54
No 147
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=2.1e-35 Score=290.64 Aligned_cols=204 Identities=24% Similarity=0.371 Sum_probs=154.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.... ++.++|++|++.
T Consensus 13 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 85 (232)
T cd03218 13 RKVVNGVSLSVKQG-EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEAS------ 85 (232)
T ss_pred EEeeccceeEecCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcc------
Confidence 35799999999998 9999999999999999999999999999999999999877766553 467999999732
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. ..+ +.+++... ......... .+..+.++.++...........+| +|
T Consensus 86 -----~~~------------~~t------v~~~l~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS--~G 137 (232)
T cd03218 86 -----IFR------------KLT------VEENILAVLEIRGLSKKERE---EKLEELLEEFHITHLRKSKASSLS--GG 137 (232)
T ss_pred -----ccc------------cCc------HHHHHHHHHHhcCCCHHHHH---HHHHHHHHHcCChhhhhCChhhCC--HH
Confidence 110 001 11100000 000000011 111122233444444455566677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||++|||||+.+|++|||||||++||+.+.+.+.+.+++.. .++|+|++||+++.+.. ||++++|++|+++..+++
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 217 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTP 217 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCH
Confidence 9999999999999999999999999999999999999998865 47899999999998887 999999999999998888
Q ss_pred hHHhh
Q psy3001 432 SVLMK 436 (602)
Q Consensus 432 ~~l~~ 436 (602)
+++..
T Consensus 218 ~~~~~ 222 (232)
T cd03218 218 EEIAA 222 (232)
T ss_pred HHhhc
Confidence 77643
No 148
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=3.9e-35 Score=291.27 Aligned_cols=206 Identities=22% Similarity=0.318 Sum_probs=155.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC-----CceEEECCeecCCC--ChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA-----DGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~-----~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|+ +|+|.++|.++... ....+++.++|+||++.
T Consensus 15 ~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~- 92 (247)
T TIGR00972 15 EALKNINLDIPKN-QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN- 92 (247)
T ss_pred eeecceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc-
Confidence 4799999999998 999999999999999999999999998 99999999988753 34567889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++. . ++.+++... .............+..+.++.++.. ........
T Consensus 93 ----------~~~-------------~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 143 (247)
T TIGR00972 93 ----------PFP-------------M------SIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSAL 143 (247)
T ss_pred ----------cCC-------------C------CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc
Confidence 110 0 010100000 0000000000111122223333333 23344556
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++
T Consensus 144 ~LS--gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 144 GLS--GGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221 (247)
T ss_pred cCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 677 69999999999999999999999999999999999999999987666899999999999987 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.++++++...
T Consensus 222 ~~~~~~~~~~~~ 233 (247)
T TIGR00972 222 VEYGPTEQIFTN 233 (247)
T ss_pred EEeCCHHHHHhC
Confidence 999998887654
No 149
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-35 Score=302.69 Aligned_cols=220 Identities=24% Similarity=0.285 Sum_probs=162.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC----CCCceEEECCeecCCCChHHHh----hccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE----PADGTIIIDGVDIRTLGLHTLR----SRLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~----~~~G~I~i~g~~~~~~~~~~~~----~~i~~v~Q~~ 269 (602)
...++||||++.+| |+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..++...++ +.++||+|++
T Consensus 20 ~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 20 VKAVDRVSMTLTEG-EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred EEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 35899999999998 9999999999999999999999997 5899999999999888776543 4799999985
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccch--hHHHHHHHHHHHHHHhhcccCC---ccccc
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSN--LQRFYVATSRQLKRLESVSRSP---IYSHF 344 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~---~~~~~ 344 (602)
...+. |.. ...+.+...+....... .........+..+.++.+++.+ .....
T Consensus 99 ~~~l~-----p~~------------------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 155 (330)
T PRK15093 99 QSCLD-----PSE------------------RVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF 155 (330)
T ss_pred chhcC-----ccc------------------cHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 42110 000 00000000000000000 0000011122334444555432 23556
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEe
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
...|| |||||||+|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|+
T Consensus 156 p~~LS--gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~ 233 (330)
T PRK15093 156 PYELT--EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY 233 (330)
T ss_pred chhCC--HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 67788 6999999999999999999999999999999999999999998754 7899999999999987 99999999
Q ss_pred CceEEeecChhHHhhcchhHHH
Q psy3001 422 KGLVVEFDSPSVLMKNKASIFY 443 (602)
Q Consensus 422 ~G~i~~~g~~~~l~~~~~~~~~ 443 (602)
+|+|++.|+.++++.++...|.
T Consensus 234 ~G~ive~g~~~~i~~~p~~~y~ 255 (330)
T PRK15093 234 CGQTVETAPSKELVTTPHHPYT 255 (330)
T ss_pred CCEEEEECCHHHHHhCCCCHHH
Confidence 9999999999998776544443
No 150
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1.7e-35 Score=288.50 Aligned_cols=195 Identities=26% Similarity=0.384 Sum_probs=146.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH----Hhhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT----LRSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~----~~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++.++|++|++.
T Consensus 17 ~~il~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--- 92 (218)
T cd03255 17 VQALKGVSLSIEKG-EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFN--- 92 (218)
T ss_pred eeEEeeeEEEEcCC-CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccc---
Confidence 45899999999998 999999999999999999999999999999999999988766432 4568999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. ..+ +.+++.... ...... .....+..+.++.++..+........+| +
T Consensus 93 --------~~~------------~~t------v~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~ 143 (218)
T cd03255 93 --------LLP------------DLT------ALENVELPLLLAGVPK-KERRERAEELLERVGLGDRLNHYPSELS--G 143 (218)
T ss_pred --------cCC------------CCc------HHHHHHHHHhhcCCCH-HHHHHHHHHHHHHcCCchhhhcChhhcC--H
Confidence 110 001 111100000 000000 0011122233334444444455566777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLV 425 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i 425 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 144 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 144 GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999998754 7899999999998867999999999974
No 151
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=4.6e-35 Score=293.95 Aligned_cols=207 Identities=21% Similarity=0.331 Sum_probs=156.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++.
T Consensus 20 ~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~---- 94 (269)
T PRK11831 20 RCIFDNISLTVPRG-KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGA---- 94 (269)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccc----
Confidence 45799999999998 99999999999999999999999999999999999998766543 35678999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. .. ++.+++.... ...... .....+..+.++.++...........+| |
T Consensus 95 -------~~~------------~~------tv~enl~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS--g 146 (269)
T PRK11831 95 -------LFT------------DM------NVFDNVAYPLREHTQLPA-PLLHSTVMMKLEAVGLRGAAKLMPSELS--G 146 (269)
T ss_pred -------cCC------------CC------CHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHcCChhhhhCChhhCC--H
Confidence 110 00 1111100000 000000 0001112222334444444444556677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g 226 (269)
T PRK11831 147 GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHG 226 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999988643 6899999999999987 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
+++++.+.
T Consensus 227 ~~~~~~~~ 234 (269)
T PRK11831 227 SAQALQAN 234 (269)
T ss_pred CHHHHhcC
Confidence 98887654
No 152
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=8.9e-35 Score=290.03 Aligned_cols=212 Identities=47% Similarity=0.733 Sum_probs=159.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++
T Consensus 35 ~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~--------- 104 (257)
T cd03288 35 PVLKHVKAYIKPG-QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDP--------- 104 (257)
T ss_pred cceeEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCC---------
Confidence 4688888888887 999999999999999999999999999999999999998888888899999999974
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH-HHH-HHHhhc--ccCCcccccCCcCCCChhh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS-RQL-KRLESV--SRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l~~~--~~~~~~~~~~~~lsgs~Gq 354 (602)
.++ ..++..+-.... .. .......... ..+ +.+... +........+..+| +||
T Consensus 105 --~l~-------------~~tv~~nl~~~~-----~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS--~G~ 161 (257)
T cd03288 105 --ILF-------------SGSIRFNLDPEC-----KC-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFS--VGQ 161 (257)
T ss_pred --ccc-------------ccHHHHhcCcCC-----CC-CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCC--HHH
Confidence 222 111111100000 00 0000000000 001 111111 22333444556677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHH
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l 434 (602)
|||++|||||+++|++|||||||++||+.++..+.+.++...++.|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 162 ~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~ 241 (257)
T cd03288 162 RQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENL 241 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887678999999999999988999999999999999998888
Q ss_pred hhcchhHHH
Q psy3001 435 MKNKASIFY 443 (602)
Q Consensus 435 ~~~~~~~~~ 443 (602)
.......+.
T Consensus 242 ~~~~~~~~~ 250 (257)
T cd03288 242 LAQEDGVFA 250 (257)
T ss_pred HhccchHHH
Confidence 765444333
No 153
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=2.5e-35 Score=300.71 Aligned_cols=203 Identities=25% Similarity=0.347 Sum_probs=154.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++|+||++..
T Consensus 17 ~~~l~~vsl~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~------ 88 (303)
T TIGR01288 17 KVVVNDLSFTIARG-ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGVVPQFDNL------ 88 (303)
T ss_pred eEEEcceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEEEeccccC------
Confidence 35799999999998 99999999999999999999999999999999999988653 35668899999997421
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccc-c--ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-P--FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+. .. ++.+++.. . .......... +..+.++.++...........+| |||
T Consensus 89 -----~~------------~~------tv~e~l~~~~~~~~~~~~~~~~---~~~~ll~~~~l~~~~~~~~~~LS--gG~ 140 (303)
T TIGR01288 89 -----DP------------EF------TVRENLLVFGRYFGMSTREIEA---VIPSLLEFARLESKADVRVALLS--GGM 140 (303)
T ss_pred -----Cc------------CC------cHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHCCChhHhcCchhhCC--HHH
Confidence 10 00 11111000 0 0000000011 11122233344333444555677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.++++. +++|||++||+++.+.. ||++++|++|+++..|+++
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999998874 47899999999999987 9999999999999999988
Q ss_pred HHhh
Q psy3001 433 VLMK 436 (602)
Q Consensus 433 ~l~~ 436 (602)
++..
T Consensus 221 ~~~~ 224 (303)
T TIGR01288 221 ALID 224 (303)
T ss_pred HHHh
Confidence 8754
No 154
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=3.3e-35 Score=299.34 Aligned_cols=205 Identities=22% Similarity=0.314 Sum_probs=158.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| +++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|+||++.
T Consensus 15 ~~~l~~is~~i~~G-ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~~------- 85 (301)
T TIGR03522 15 QNALDEVSFEAQKG-RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNP------- 85 (301)
T ss_pred EEEEEEeEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCCC-------
Confidence 45899999999998 9999999999999999999999999999999999999876 34567889999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccc-cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. . .++.+++.. ....... ......+..+.++.++..+........+| +||||
T Consensus 86 ----l~~------------~------~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~LS--~G~~q 140 (301)
T TIGR03522 86 ----LYL------------D------MYVREYLQFIAGIYGMK-GQLLKQRVEEMIELVGLRPEQHKKIGQLS--KGYRQ 140 (301)
T ss_pred ----CCC------------C------CcHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHCCCchHhcCchhhCC--HHHHH
Confidence 110 0 011111000 0000000 00011122233334455554555566777 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
|++|||||+++|++|+|||||++||+.+.+++++.++++.+++|||++||+++++.. ||||++|++|+++..|+++++.
T Consensus 141 rv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999999988 9999999999999999988875
Q ss_pred h
Q psy3001 436 K 436 (602)
Q Consensus 436 ~ 436 (602)
+
T Consensus 221 ~ 221 (301)
T TIGR03522 221 A 221 (301)
T ss_pred H
Confidence 4
No 155
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.5e-35 Score=297.24 Aligned_cols=204 Identities=27% Similarity=0.398 Sum_probs=158.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++||||++.+| +++|++||||||||||+|+|+|++.|++|+|.++|.+...- ...+++++||+||++.
T Consensus 18 ~~~l~~vs~~i~~G-ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy~~~~~~------- 88 (293)
T COG1131 18 KTALDGVSFEVEPG-EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGYVPQEPS------- 88 (293)
T ss_pred CEEEeceeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEEEccCCC-------
Confidence 57899999999998 99999999999999999999999999999999999988765 7788999999999743
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHH--HHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF--YVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
++ ..+ ++.+++. ....+... .....+..+.++.+++..........+| +|||
T Consensus 89 ----~~--------------~~l----T~~e~l~--~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS--~G~k 142 (293)
T COG1131 89 ----LY--------------PEL----TVRENLE--FFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLS--GGMK 142 (293)
T ss_pred ----CC--------------ccc----cHHHHHH--HHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcC--HHHH
Confidence 11 000 1111100 00000000 0111222333444554442233345566 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-c-cEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-H-CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
||++||+||+++|++|||||||++|||.++..+.+.|+++.+ + +||+++||.++++.. ||+|++|++|+++..|+++
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~ 222 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPE 222 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999999764 5 799999999999998 9999999999999999888
Q ss_pred HHhh
Q psy3001 433 VLMK 436 (602)
Q Consensus 433 ~l~~ 436 (602)
++..
T Consensus 223 ~l~~ 226 (293)
T COG1131 223 ELKE 226 (293)
T ss_pred HHHH
Confidence 8654
No 156
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-35 Score=285.86 Aligned_cols=197 Identities=25% Similarity=0.319 Sum_probs=147.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| +++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|++|++.
T Consensus 13 ~~~l~~vs~~i~~g--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~------- 82 (211)
T cd03264 13 KRALDGVSLTLGPG--MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEFG------- 82 (211)
T ss_pred EEEEcceeEEEcCC--cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCCc-------
Confidence 35899999999985 99999999999999999999999999999999999887665 677889999999742
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++.. .++.+++... ....... .....+..+.++.++..+........+| +||||
T Consensus 83 ----~~~~------------------~tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 137 (211)
T cd03264 83 ----VYPN------------------FTVREFLDYIAWLKGIPS-KEVKARVDEVLELVNLGDRAKKKIGSLS--GGMRR 137 (211)
T ss_pred ----cccc------------------CCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHCCCHHHHhCchhhCC--HHHHH
Confidence 1100 0111110000 0000000 0001111122223333333344455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|++|||||+.+|+++||||||++||+.+.+++.+.+++..++.|+|++||+++.+.. ||++++|++|++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999988667999999999999987 9999999999998653
No 157
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.9e-35 Score=296.95 Aligned_cols=207 Identities=26% Similarity=0.389 Sum_probs=156.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC----ChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL----GLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~----~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... +...+++.++|++|++...+
T Consensus 21 ~~l~~vsl~i~~G-e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~- 98 (287)
T PRK13641 21 KGLDNISFELEEG-SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL- 98 (287)
T ss_pred cceeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhh-
Confidence 4799999999998 99999999999999999999999999999999999988643 24566788999999742111
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~ 352 (602)
+ . .++.+++... ....... .....+..+.++.++.. .........+| +
T Consensus 99 --------~-------------~------~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~~LS--g 148 (287)
T PRK13641 99 --------F-------------E------NTVLKDVEFGPKNFGFSE-DEAKEKALKWLKKVGLSEDLISKSPFELS--G 148 (287)
T ss_pred --------c-------------c------chHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCChhHhhCCcccCC--H
Confidence 1 0 0111110000 0000000 00111122233344443 34455566777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.++++. ++.|||++||+++.+.. ||++++|++|++++.|+
T Consensus 149 Gq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~ 228 (287)
T PRK13641 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHAS 228 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998874 47899999999999987 99999999999999999
Q ss_pred hhHHhhc
Q psy3001 431 PSVLMKN 437 (602)
Q Consensus 431 ~~~l~~~ 437 (602)
++++...
T Consensus 229 ~~~~~~~ 235 (287)
T PRK13641 229 PKEIFSD 235 (287)
T ss_pred HHHHhcC
Confidence 8887653
No 158
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5e-35 Score=294.02 Aligned_cols=208 Identities=25% Similarity=0.375 Sum_probs=158.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+
T Consensus 22 ~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~---- 96 (271)
T PRK13632 22 NNALKNVSFEINEG-EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQF---- 96 (271)
T ss_pred ccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhc----
Confidence 35799999999998 9999999999999999999999999999999999999987777788899999999842111
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+ .. ++.+++.... ...... .....+..+.++.++..+........+| +||||
T Consensus 97 -----~-------------~~------tv~enl~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 149 (271)
T PRK13632 97 -----I-------------GA------TVEDDIAFGLENKKVPP-KKMKDIIDDLAKKVGMEDYLDKEPQNLS--GGQKQ 149 (271)
T ss_pred -----C-------------cc------cHHHHHHhHHHHcCCCH-HHHHHHHHHHHHHcCCHHHhhCCcccCC--HHHHH
Confidence 0 00 1111100000 000000 0011112222334444444555566777 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+..||++++|++|++++.++.+++
T Consensus 150 rl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 150 RVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999988643 4899999999999866999999999999999988877
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
...
T Consensus 230 ~~~ 232 (271)
T PRK13632 230 LNN 232 (271)
T ss_pred hcC
Confidence 553
No 159
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-35 Score=287.82 Aligned_cols=200 Identities=24% Similarity=0.324 Sum_probs=151.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---H-hhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---L-RSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~-~~~i~~v~Q~~~~~~ 273 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|+++...+... + ++.++|++|++.
T Consensus 22 ~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--- 97 (233)
T PRK11629 22 TDVLHNVSFSIGEG-EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHH--- 97 (233)
T ss_pred eeeEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcc---
Confidence 35899999999998 999999999999999999999999999999999999998876643 3 367999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. .. ++.+++.... ...... .....+..+.++.++...........+| +
T Consensus 98 --------~~~------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS--g 148 (233)
T PRK11629 98 --------LLP------------DF------TALENVAMPLLIGKKKP-AEINSRALEMLAAVGLEHRANHRPSELS--G 148 (233)
T ss_pred --------cCC------------CC------CHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCchhhhCChhhCC--H
Confidence 110 00 1111100000 000000 0111122233344455444455566677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
|||||++||||++.+|++|||||||++||+.+...+.+.+++.. +++|+|++||+++.+..+|++++|++|++++.++
T Consensus 149 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998864 3789999999999998888999999999987664
No 160
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-35 Score=295.29 Aligned_cols=208 Identities=22% Similarity=0.337 Sum_probs=154.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC--CCChHHHhhccceecccchhhhhhc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++. ......+++.++|++|++...+
T Consensus 15 ~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~--- 90 (271)
T PRK13638 15 PVLKGLNLDFSLS-PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI--- 90 (271)
T ss_pred ccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc---
Confidence 4799999999998 999999999999999999999999999999999999884 2334567889999999743111
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+ ..+.. +.+.... ............ +..+.++.++...........+| |||||
T Consensus 91 ------~-------------~~~~~--~~l~~~~-~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS--gG~~q 143 (271)
T PRK13638 91 ------F-------------YTDID--SDIAFSL-RNLGVPEAEITR---RVDEALTLVDAQHFRHQPIQCLS--HGQKK 143 (271)
T ss_pred ------c-------------cccHH--HHHHHHH-HHcCCCHHHHHH---HHHHHHHHcCCHhHhcCCchhCC--HHHHH
Confidence 0 00000 0000000 000000001111 11122223333333344455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 144 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 144 RVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998864 47899999999999977 999999999999999998887
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
...
T Consensus 224 ~~~ 226 (271)
T PRK13638 224 FAC 226 (271)
T ss_pred hcC
Confidence 654
No 161
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=4e-35 Score=286.43 Aligned_cols=196 Identities=25% Similarity=0.370 Sum_probs=146.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hh-hccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LR-SRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~-~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... ++ +.++|++|++.
T Consensus 18 ~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--- 93 (221)
T TIGR02211 18 TRVLKGVSLSIGKG-EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHH--- 93 (221)
T ss_pred eEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccc---
Confidence 35899999999998 999999999999999999999999999999999999988776544 23 67999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. .. ++.+++.... ...... .....+..+.++.++..+........+| +
T Consensus 94 --------~~~------------~~------tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~ 144 (221)
T TIGR02211 94 --------LLP------------DF------TALENVAMPLLIGKKSV-KEAKERAYEMLEKVGLEHRINHRPSELS--G 144 (221)
T ss_pred --------cCC------------CC------cHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCChhhhhCChhhCC--H
Confidence 110 00 1111100000 000000 0011112223334444444455556777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVV 426 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~ 426 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+..+|++++|++|+++
T Consensus 145 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 145 GERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999999998874 368999999999998779999999999975
No 162
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.5e-35 Score=289.48 Aligned_cols=210 Identities=24% Similarity=0.333 Sum_probs=157.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCCChHHHhhccceecccchhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~ 272 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++...+...+++.++|++|++...
T Consensus 16 ~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 16 VEVLDGVNLEIPDN-TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred eeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 34799999999998 99999999999999999999999974 6999999999998877778889999999974211
Q ss_pred hhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC----CcccccCCcC
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGETV 348 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l 348 (602)
+ ..+...+-..... ............ .+..+.++.++.. .........+
T Consensus 95 ~-----------------------~~tv~enl~~~~~-~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~~~~L 147 (250)
T PRK14247 95 P-----------------------NLSIFENVALGLK-LNRLVKSKKELQ---ERVRWALEKAQLWDEVKDRLDAPAGKL 147 (250)
T ss_pred C-----------------------CCcHHHHHHHHHH-hccccCCHHHHH---HHHHHHHHHcCCCcchhhhhcCCcccC
Confidence 0 1111100000000 000000001111 1112222233322 1233445567
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
| +|||||++|||||+.+|++|+|||||++||+.++.++.+.+++..+++|+|++||+++.+.. ||++++|++|++++
T Consensus 148 S--gG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 148 S--GGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 7 69999999999999999999999999999999999999999987667999999999999876 99999999999999
Q ss_pred ecChhHHhhc
Q psy3001 428 FDSPSVLMKN 437 (602)
Q Consensus 428 ~g~~~~l~~~ 437 (602)
.|+++++...
T Consensus 226 ~g~~~~~~~~ 235 (250)
T PRK14247 226 WGPTREVFTN 235 (250)
T ss_pred ECCHHHHHcC
Confidence 9999887654
No 163
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=6.1e-35 Score=292.58 Aligned_cols=209 Identities=28% Similarity=0.397 Sum_probs=157.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... +++.++|++|++...+
T Consensus 24 ~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~- 101 (265)
T TIGR02769 24 APVLTNVSLSIEEG-ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV- 101 (265)
T ss_pred eEEeeCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc-
Confidence 45899999999998 999999999999999999999999999999999999988766543 5778999999742111
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGN 351 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs 351 (602)
+ . .. ++.+++.... ...... .....+..+.++.++.. .........+|
T Consensus 102 --------~-~-----------~~------tv~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LS-- 152 (265)
T TIGR02769 102 --------N-P-----------RM------TVRQIIGEPLRHLTSLDE-SEQKARIAELLDMVGLRSEDADKLPRQLS-- 152 (265)
T ss_pred --------C-C-----------CC------CHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCChhhhhCChhhCC--
Confidence 0 0 00 0111000000 000000 00111122233344442 23444556677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 6999999999999999999999999999999999999999988643 7899999999999987 999999999999999
Q ss_pred cChhHHhhc
Q psy3001 429 DSPSVLMKN 437 (602)
Q Consensus 429 g~~~~l~~~ 437 (602)
|+++++...
T Consensus 233 g~~~~~~~~ 241 (265)
T TIGR02769 233 CDVAQLLSF 241 (265)
T ss_pred CCHHHHcCC
Confidence 999998764
No 164
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-34 Score=268.95 Aligned_cols=206 Identities=24% Similarity=0.383 Sum_probs=161.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...+++|||+..+| |+++|+|+||+|||||+|+|+|+.+|.+|+|.++|.|+...+++.. +..|+||||...
T Consensus 16 ~~~L~gvsl~v~~G-eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~------ 88 (237)
T COG0410 16 IQALRGVSLEVERG-EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRR------ 88 (237)
T ss_pred eeEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccccc------
Confidence 45799999999998 9999999999999999999999999999999999999999988764 678999999632
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccc---cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT---PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+|. .-+...|-.+-..... ......+..+...++..++ ....+.++| ||
T Consensus 89 -----iF~------------~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker---------~~~~aG~LS--GG 140 (237)
T COG0410 89 -----IFP------------RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKER---------RNQRAGTLS--GG 140 (237)
T ss_pred -----chh------------hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHH---------hcCcccCCC--hH
Confidence 110 1111111111000000 0000123334444443333 345566777 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||.+||||||+.+|++|+|||||.+|-|.-.+.|.+.++++.+ +.||++|.++...... +||.++|++|+|+..|+
T Consensus 141 EQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~ 220 (237)
T COG0410 141 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGT 220 (237)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999999999999864 5799999999999988 99999999999999999
Q ss_pred hhHHhhcc
Q psy3001 431 PSVLMKNK 438 (602)
Q Consensus 431 ~~~l~~~~ 438 (602)
.+++..++
T Consensus 221 ~~eL~~~~ 228 (237)
T COG0410 221 AAELLADP 228 (237)
T ss_pred HHHHhcCH
Confidence 99998763
No 165
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=3.5e-35 Score=285.11 Aligned_cols=196 Identities=20% Similarity=0.327 Sum_probs=146.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. ++.++|++|++..
T Consensus 14 ~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~~q~~~~------- 83 (213)
T cd03301 14 TALDDLNLDIADG-EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMVFQNYAL------- 83 (213)
T ss_pred eeeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEEecChhh-------
Confidence 4799999999998 99999999999999999999999999999999999998765432 4689999997421
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+. .. ++.+++... ....... .....+..+.+..++...........+| +|||||
T Consensus 84 ----~~------------~~------tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qr 138 (213)
T cd03301 84 ----YP------------HM------TVYDNIAFGLKLRKVPK-DEIDERVREVAELLQIEHLLDRKPKQLS--GGQRQR 138 (213)
T ss_pred ----cc------------CC------CHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCHHHHhCChhhCC--HHHHHH
Confidence 10 00 111110000 0000000 0001111222233333333455556677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
++|||||+.+|++++|||||++||+.+...+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999988643 7899999999999887 9999999999998765
No 166
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-35 Score=294.28 Aligned_cols=205 Identities=24% Similarity=0.336 Sum_probs=158.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++..++
T Consensus 21 ~~l~~v~l~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~----- 94 (277)
T PRK13642 21 NQLNGVSFSITKG-EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQF----- 94 (277)
T ss_pred eeeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhh-----
Confidence 4799999999998 9999999999999999999999999999999999999987777788899999999853111
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-c--cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F--CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
+ .. ++.+++... . ........ .+....++.++...........+| +|||
T Consensus 95 ----~-------------~~------tv~eni~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS--~G~~ 146 (277)
T PRK13642 95 ----V-------------GA------TVEDDVAFGMENQGIPREEMI---KRVDEALLAVNMLDFKTREPARLS--GGQK 146 (277)
T ss_pred ----c-------------cC------CHHHHHHhhHHHcCCCHHHHH---HHHHHHHHHCCCHhHhhCCcccCC--HHHH
Confidence 0 00 111110000 0 00000111 111222223333334445556677 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|||||||++||+.+...+.+.++++.+ +.|+|++||+++.+..||++++|++|++++.|++++
T Consensus 147 qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999988753 789999999999987799999999999999999988
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
++..
T Consensus 227 ~~~~ 230 (277)
T PRK13642 227 LFAT 230 (277)
T ss_pred HhcC
Confidence 7654
No 167
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.1e-35 Score=293.52 Aligned_cols=205 Identities=25% Similarity=0.430 Sum_probs=157.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC-hHHHhhccceecccchhhhhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~-~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|++|++..++
T Consensus 16 ~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~---- 90 (274)
T PRK13644 16 PALENINLVIKKG-EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQF---- 90 (274)
T ss_pred ceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhc----
Confidence 3799999999998 999999999999999999999999999999999999987765 3567889999999853211
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+ .. ++.+++... .......... +..+.++.++...........+| +||
T Consensus 91 -----~-------------~~------tv~enl~~~~~~~~~~~~~~~~---~~~~~l~~~gl~~~~~~~~~~LS--~G~ 141 (274)
T PRK13644 91 -----V-------------GR------TVEEDLAFGPENLCLPPIEIRK---RVDRALAEIGLEKYRHRSPKTLS--GGQ 141 (274)
T ss_pred -----c-------------cc------hHHHHHHhhHHHcCCCHHHHHH---HHHHHHHHCCCHHHhcCCcccCC--HHH
Confidence 1 00 111110000 0000001111 11222233444344455566777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.++++. ++.|+|++||+++.+..||++++|++|++++.|++++
T Consensus 142 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 142 GQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999998864 4799999999999986699999999999999999888
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+...
T Consensus 222 ~~~~ 225 (274)
T PRK13644 222 VLSD 225 (274)
T ss_pred HhcC
Confidence 7654
No 168
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=7.2e-35 Score=290.08 Aligned_cols=207 Identities=25% Similarity=0.390 Sum_probs=155.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC--------hHHHhhccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG--------LHTLRSRLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~--------~~~~~~~i~~v~Q~~ 269 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|++|++
T Consensus 16 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 16 QTVLHGIDLEVKPG-EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred eeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 35799999999998 999999999999999999999999999999999999886532 345678899999974
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-c-cchhHHHHHHHHHHHHHHhhcccCCcccccCCc
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGET 347 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 347 (602)
. ++. ..+ +.+++... . ...... .....+..+.++.++...........
T Consensus 95 ~-----------~~~------------~~t------v~e~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~ 144 (250)
T PRK11264 95 N-----------LFP------------HRT------VLENIIEGPVIVKGEPK-EEATARARELLAKVGLAGKETSYPRR 144 (250)
T ss_pred c-----------cCC------------CCC------HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCcchhhCChhh
Confidence 2 110 001 11110000 0 000000 00111122223344444434455667
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
+| +|||||++|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 145 LS--~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 222 (250)
T PRK11264 145 LS--GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222 (250)
T ss_pred CC--hHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 77 699999999999999999999999999999999999999998865 47899999999999987 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.++++++...
T Consensus 223 ~~~~~~~~~~~~ 234 (250)
T PRK11264 223 VEQGPAKALFAD 234 (250)
T ss_pred EEeCCHHHHhcC
Confidence 999998887654
No 169
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=3.1e-35 Score=286.56 Aligned_cols=197 Identities=23% Similarity=0.313 Sum_probs=148.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|++|++.
T Consensus 19 ~il~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~-------- 88 (218)
T cd03266 19 QAVDGVSFTVKPG-EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTG-------- 88 (218)
T ss_pred eeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCcc--------
Confidence 5899999999998 9999999999999999999999999999999999998875 34567889999999742
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
++. ..+ +.+++... ...... ......+..+.++.++...........+| +|||||
T Consensus 89 ---~~~------------~~t------v~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qr 144 (218)
T cd03266 89 ---LYD------------RLT------ARENLEYFAGLYGLK-GDELTARLEELADRLGMEELLDRRVGGFS--TGMRQK 144 (218)
T ss_pred ---cCc------------CCC------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHhhhhhhcC--HHHHHH
Confidence 110 001 11110000 000000 00011122223333444444455556677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
++|||||+.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999998874 47899999999999887 9999999999997643
No 170
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-35 Score=290.39 Aligned_cols=204 Identities=25% Similarity=0.350 Sum_probs=155.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+
T Consensus 15 ~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~---- 89 (258)
T PRK13548 15 RTLLDDVSLTLRPG-EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSF---- 89 (258)
T ss_pred eeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCC----
Confidence 45799999999998 9999999999999999999999999999999999999887777777889999999742111
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
..+ +.+++... .......... +..+.++.++...........+| +||
T Consensus 90 -------------------~~t------v~e~l~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS--gGe 139 (258)
T PRK13548 90 -------------------PFT------VEEVVAMGRAPHGLSRAEDDA---LVAAALAQVDLAHLAGRDYPQLS--GGE 139 (258)
T ss_pred -------------------CCC------HHHHHHhhhcccCCCcHHHHH---HHHHHHHHcCCHhHhcCCcccCC--HHH
Confidence 001 11110000 0000000011 11122223333333444556677 699
Q ss_pred HHHHHHHHHHh------hCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 355 RQLICLARALL------RKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 355 ~Qrl~lAral~------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
|||++|||||+ .+|++|+|||||++||+.+...+.+.|+++. .+.|||++||+++.+.. ||++++|++|++
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 219 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRL 219 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEE
Confidence 99999999999 5999999999999999999999999998865 47899999999999987 999999999999
Q ss_pred EeecChhHHhh
Q psy3001 426 VEFDSPSVLMK 436 (602)
Q Consensus 426 ~~~g~~~~l~~ 436 (602)
++.++++++..
T Consensus 220 ~~~~~~~~~~~ 230 (258)
T PRK13548 220 VADGTPAEVLT 230 (258)
T ss_pred EeeCCHHHHhC
Confidence 99888777643
No 171
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=8.2e-35 Score=287.78 Aligned_cols=207 Identities=23% Similarity=0.360 Sum_probs=156.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC--hHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG--LHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~--~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|++|++..
T Consensus 14 ~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~---- 88 (240)
T PRK09493 14 TQVLHNIDLNIDQG-EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYL---- 88 (240)
T ss_pred eEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEeccccc----
Confidence 34799999999998 999999999999999999999999999999999999987643 34667899999997321
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+. .. ++.+++.... ...... .....+..+.++.++..+........+| +|
T Consensus 89 -------~~------------~~------tv~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS--~G 140 (240)
T PRK09493 89 -------FP------------HL------TALENVMFGPLRVRGASK-EEAEKQARELLAKVGLAERAHHYPSELS--GG 140 (240)
T ss_pred -------CC------------CC------cHHHHHHhHHHHhcCCCH-HHHHHHHHHHHHHcCChHHHhcChhhcC--HH
Confidence 10 00 0111100000 000000 0011112223334444444445556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||++|||||+.+|++++|||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 141 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 220 (240)
T PRK09493 141 QQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220 (240)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999998864 47999999999999987 999999999999999988
Q ss_pred hHHhhc
Q psy3001 432 SVLMKN 437 (602)
Q Consensus 432 ~~l~~~ 437 (602)
.++.+.
T Consensus 221 ~~~~~~ 226 (240)
T PRK09493 221 QVLIKN 226 (240)
T ss_pred HHHhcC
Confidence 877654
No 172
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-35 Score=293.84 Aligned_cols=207 Identities=23% Similarity=0.322 Sum_probs=159.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCC---ceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPAD---GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~---G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++ |+|.++|.++...+...+++.++|++|++..++
T Consensus 21 ~~l~~v~l~i~~G-e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~-- 97 (282)
T PRK13640 21 PALNDISFSIPRG-SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQF-- 97 (282)
T ss_pred cceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhh--
Confidence 4799999999998 9999999999999999999999999987 899999999987777778889999999853211
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+ .. ++.+++... ...... ......+..+.++.++..+........+| +||
T Consensus 98 -------~-------------~~------tv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~LS--~G~ 148 (282)
T PRK13640 98 -------V-------------GA------TVGDDVAFGLENRAVP-RPEMIKIVRDVLADVGMLDYIDSEPANLS--GGQ 148 (282)
T ss_pred -------c-------------cC------CHHHHHHhhHHhCCCC-HHHHHHHHHHHHHHCCChhHhcCCcccCC--HHH
Confidence 0 00 111110000 000000 00011122233334454455556667788 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
+||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+..||++++|++|++++.|+++
T Consensus 149 ~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~ 228 (282)
T PRK13640 149 KQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPV 228 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999988753 78999999999998669999999999999999988
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
+++..
T Consensus 229 ~~~~~ 233 (282)
T PRK13640 229 EIFSK 233 (282)
T ss_pred HHhcC
Confidence 87654
No 173
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.4e-34 Score=287.00 Aligned_cols=207 Identities=20% Similarity=0.328 Sum_probs=156.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC---CCCceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE---PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~---~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++...+...+++.++|++|++.
T Consensus 15 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~---- 89 (246)
T PRK14269 15 KQALFDINMQIEQN-KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN---- 89 (246)
T ss_pred EeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCc----
Confidence 35799999999998 9999999999999999999999984 699999999999988777788889999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-ccchh-HHHHHHHHHHHHHHhhcccC----CcccccCCcC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNL-QRFYVATSRQLKRLESVSRS----PIYSHFGETV 348 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l 348 (602)
++. . ++.+++... ..... ........+..+.++.++.. .........+
T Consensus 90 -------l~~-------------~------tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 143 (246)
T PRK14269 90 -------VFV-------------K------SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALAL 143 (246)
T ss_pred -------ccc-------------c------cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccC
Confidence 210 0 111110000 00000 00000011111222233332 1233445566
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
| +|||||++|||||+++|++++|||||++||+.+...+.+.+++..+++|+|++||+++.+.. ||++++|++|++++
T Consensus 144 S--~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 221 (246)
T PRK14269 144 S--GGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE 221 (246)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE
Confidence 7 69999999999999999999999999999999999999999887668999999999999987 99999999999999
Q ss_pred ecChhHHhhc
Q psy3001 428 FDSPSVLMKN 437 (602)
Q Consensus 428 ~g~~~~l~~~ 437 (602)
.|++++++..
T Consensus 222 ~g~~~~~~~~ 231 (246)
T PRK14269 222 FGESKEFFEN 231 (246)
T ss_pred ECCHHHHHhC
Confidence 9998887654
No 174
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.1e-34 Score=285.95 Aligned_cols=206 Identities=32% Similarity=0.474 Sum_probs=156.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++
T Consensus 16 ~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--------- 85 (234)
T cd03251 16 PVLRDISLDIPAG-ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDV--------- 85 (234)
T ss_pred cceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCC---------
Confidence 4799999999998 999999999999999999999999999999999999988777778888999999973
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCChh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~G 353 (602)
.++ ..+. .+++..... ........... ...+.++.+ +...........+| +|
T Consensus 86 --~~~-------------~~tv------~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS--~G 142 (234)
T cd03251 86 --FLF-------------NDTV------AENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLS--GG 142 (234)
T ss_pred --eec-------------cccH------HHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCC--HH
Confidence 222 1111 111000000 00001100000 001111111 22223344456677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
||||++|||||+.+|+++||||||++||+.+...+.+.|++..++.|+|++||+++.+..||++++|++|++++.+++++
T Consensus 143 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~ 222 (234)
T cd03251 143 QRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEE 222 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHH
Confidence 99999999999999999999999999999999999999998877899999999999997799999999999999998877
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+...
T Consensus 223 ~~~~ 226 (234)
T cd03251 223 LLAQ 226 (234)
T ss_pred HHHc
Confidence 7544
No 175
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4e-35 Score=286.08 Aligned_cols=196 Identities=27% Similarity=0.345 Sum_probs=146.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. +++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~------- 83 (220)
T cd03293 17 VTALEDISLSVEEG-EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYVFQQDA------- 83 (220)
T ss_pred eEEEeceeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcEEEEecccc-------
Confidence 45899999999998 9999999999999999999999999999999999998763 3578999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++... ....... .....+..+.++.++...........+| +||||
T Consensus 84 ----~~~------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~q 138 (220)
T cd03293 84 ----LLP------------WL------TVLDNVALGLELQGVPK-AEARERAEELLELVGLSGFENAYPHQLS--GGMRQ 138 (220)
T ss_pred ----ccc------------CC------CHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCChhhhhCCcccCC--HHHHH
Confidence 110 00 111110000 0000000 0011122223334444333444556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEe--CceEEeecCh
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLD--KGLVVEFDSP 431 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~--~G~i~~~g~~ 431 (602)
|++|||||+.+|+++||||||++||+.+...+.+.+++.. .++|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 139 rl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 139 RVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999999998863 36899999999999877 99999999 7999887654
No 176
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=7.5e-35 Score=284.52 Aligned_cols=195 Identities=26% Similarity=0.309 Sum_probs=147.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++..
T Consensus 15 ~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~--- 90 (222)
T PRK10908 15 RQALQGVTFHMRPG-EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHL--- 90 (222)
T ss_pred CeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccc---
Confidence 34799999999998 99999999999999999999999999999999999998776543 367899999997421
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
++ .. ++.+++... .......... +..+.++.++..+........+|
T Consensus 91 --------~~------------~~------tv~~~l~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS-- 139 (222)
T PRK10908 91 --------LM------------DR------TVYDNVAIPLIIAGASGDDIRR---RVSAALDKVGLLDKAKNFPIQLS-- 139 (222)
T ss_pred --------cc------------cc------cHHHHHHhHHHhcCCCHHHHHH---HHHHHHHHcCChhhhhCCchhCC--
Confidence 10 00 111110000 0000001111 11122233333333444556677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
+|||||++||||++.+|++|||||||++||+.+.+.+.+.++++. ++.|+|++||+++++.. ||++++|++|+++.
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 699999999999999999999999999999999999999998874 46899999999999988 99999999999864
No 177
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=1.5e-34 Score=288.90 Aligned_cols=211 Identities=22% Similarity=0.311 Sum_probs=155.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee-----cCCCChHH----Hhhccceeccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD-----IRTLGLHT----LRSRLTIIPQV 268 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~-----~~~~~~~~----~~~~i~~v~Q~ 268 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.+ +...+... .++.++|++|+
T Consensus 19 ~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 19 RKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred ceeeeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 35799999999998 9999999999999999999999999999999999998 76665544 35579999998
Q ss_pred chhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCc
Q psy3001 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGET 347 (602)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~ 347 (602)
+...+ + . ..+ ..+++............... ..+..+.++.++.. .........
T Consensus 98 ~~~~~---------~-~-----------~~~--~~~~i~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~ 151 (258)
T PRK11701 98 PRDGL---------R-M-----------QVS--AGGNIGERLMAVGARHYGDI---RATAGDWLERVEIDAARIDDLPTT 151 (258)
T ss_pred ccccc---------C-c-----------ccc--HHHHHHHHHHHhccCcHHHH---HHHHHHHHHHcCCChhHHhCCCcc
Confidence 42100 0 0 000 00001000000000000011 11122223333333 234555667
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
+| +|||||++|||||+.+|++|||||||++||+.+..++.+.++...+ +.|+|++||+++.+.. ||++++|++|+
T Consensus 152 LS--~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~ 229 (258)
T PRK11701 152 FS--GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGR 229 (258)
T ss_pred CC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 77 6999999999999999999999999999999999999999988643 7899999999999987 99999999999
Q ss_pred EEeecChhHHhhc
Q psy3001 425 VVEFDSPSVLMKN 437 (602)
Q Consensus 425 i~~~g~~~~l~~~ 437 (602)
+++.|+++++...
T Consensus 230 i~~~~~~~~~~~~ 242 (258)
T PRK11701 230 VVESGLTDQVLDD 242 (258)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999888654
No 178
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-35 Score=294.19 Aligned_cols=205 Identities=21% Similarity=0.333 Sum_probs=154.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC----ChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL----GLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~----~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ....+++.++|++|++...
T Consensus 21 ~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~-- 97 (280)
T PRK13649 21 RALFDVNLTIEDG-SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ-- 97 (280)
T ss_pred ceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhh--
Confidence 4799999999998 99999999999999999999999999999999999988754 3456788999999974211
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTG 350 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsg 350 (602)
++ .. ++.+++... .......... +..+.++.++.. .........+|
T Consensus 98 -------~~-------------~~------tv~e~l~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~LS- 147 (280)
T PRK13649 98 -------LF-------------EE------TVLKDVAFGPQNFGVSQEEAEA---LAREKLALVGISESLFEKNPFELS- 147 (280)
T ss_pred -------hc-------------cc------cHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcCCChhhhhCCcccCC-
Confidence 11 00 111110000 0000001111 111222233333 22344556677
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .++|||++||+++.+.. ||++++|++|++++.
T Consensus 148 -gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 -GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred -HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 699999999999999999999999999999999999999998864 37899999999999987 999999999999999
Q ss_pred cChhHHhhc
Q psy3001 429 DSPSVLMKN 437 (602)
Q Consensus 429 g~~~~l~~~ 437 (602)
|+++++...
T Consensus 227 g~~~~~~~~ 235 (280)
T PRK13649 227 GKPKDIFQD 235 (280)
T ss_pred CCHHHHhcC
Confidence 998887553
No 179
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.6e-35 Score=256.37 Aligned_cols=197 Identities=24% Similarity=0.321 Sum_probs=154.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH----hhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~----~~~i~~v~Q~~~~~~~ 274 (602)
..+++|++.+.+| |.+|||||||||||||+-+++|+-.|++|+|.+.|+++..++.+.. .+++++|+|..-
T Consensus 24 ~IL~~V~L~v~~G-e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~---- 98 (228)
T COG4181 24 SILKGVELVVKRG-ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH---- 98 (228)
T ss_pred eEeecceEEecCC-ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee----
Confidence 4799999999998 9999999999999999999999999999999999999998876543 478999999511
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
. ..+-+-.+++..+..-.-+..........+.++.+++..-..|++.++|| ||
T Consensus 99 --------L-----------------ip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSG--GE 151 (228)
T COG4181 99 --------L-----------------IPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSG--GE 151 (228)
T ss_pred --------c-----------------cccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCc--hH
Confidence 1 01100001111000000000111122233445577777778999999995 99
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEEe
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~ 427 (602)
+|||||||||...|+||+-||||-+||.+|-..+.+.+..+. .|.|.|+||||+....+|+|++-|++|++++
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999999987764 3689999999999999999999999999975
No 180
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-34 Score=293.07 Aligned_cols=208 Identities=24% Similarity=0.363 Sum_probs=158.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC-hHHHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~-~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ...+++.++|++|++...+..
T Consensus 23 ~~vl~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~- 100 (280)
T PRK13633 23 KLALDDVNLEVKKG-EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA- 100 (280)
T ss_pred cceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcc-
Confidence 35899999999998 999999999999999999999999999999999999987643 356788999999985321110
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
..+.+++... ....... .....+..+.++.++..+........+| +|||
T Consensus 101 ---------------------------~~v~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~LS--~G~~ 150 (280)
T PRK13633 101 ---------------------------TIVEEDVAFGPENLGIPP-EEIRERVDESLKKVGMYEYRRHAPHLLS--GGQK 150 (280)
T ss_pred ---------------------------ccHHHHHHhhHhhcCCCH-HHHHHHHHHHHHHCCCHhHhhCCcccCC--HHHH
Confidence 0000000000 0000000 0001112222334444444555667778 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|||||||++||+.+...+.+.++++. .+.|||++||+++.+..||++++|++|+++..|++++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999874 3789999999999987799999999999999999988
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+...
T Consensus 231 ~~~~ 234 (280)
T PRK13633 231 IFKE 234 (280)
T ss_pred HhcC
Confidence 8654
No 181
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.4e-34 Score=286.47 Aligned_cols=213 Identities=20% Similarity=0.277 Sum_probs=156.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.... ++.++|++|++.
T Consensus 15 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 87 (242)
T TIGR03411 15 FKALNDLSLYVDPG-ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPT------ 87 (242)
T ss_pred eEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccc------
Confidence 45899999999998 9999999999999999999999999999999999999887766543 457999999732
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchh--HHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL--QRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++.. .+...+-.............+ ........+..+.++.++..+........+| +||
T Consensus 88 -----~~~~------------~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~Ge 148 (242)
T TIGR03411 88 -----VFEN------------LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLS--HGQ 148 (242)
T ss_pred -----cCCC------------CCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCC--HHH
Confidence 1100 010000000000000000000 0000011122223334444444455556677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|||++||||++.+|++|+|||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.+++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999987 99999999999999998887
Q ss_pred Hhh
Q psy3001 434 LMK 436 (602)
Q Consensus 434 l~~ 436 (602)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 654
No 182
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.8e-35 Score=291.08 Aligned_cols=211 Identities=19% Similarity=0.328 Sum_probs=155.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++....
T Consensus 24 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~---- 98 (265)
T PRK10575 24 RTLLHPLSLTFPAG-KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAE---- 98 (265)
T ss_pred EEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCC----
Confidence 45799999999988 9999999999999999999999999999999999999887777788889999999732110
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
..+...+-................ ....+..+.+..++...........+| ||||||
T Consensus 99 -------------------~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~qr 155 (265)
T PRK10575 99 -------------------GMTVRELVAIGRYPWHGALGRFGA--ADREKVEEAISLVGLKPLAHRLVDSLS--GGERQR 155 (265)
T ss_pred -------------------CccHHHHHHhCcccccccccCCCH--HHHHHHHHHHHHcCCHHHhcCCcccCC--HHHHHH
Confidence 000000000000000000000000 001111222223333333344455677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|||||||++||+.+...+.+.|+++. . ++|+|++||+++.+.. ||++++|++|++++.++++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 999999999999999999999999999999999998874 3 7899999999999977 999999999999998888776
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 236 ~~ 237 (265)
T PRK10575 236 MR 237 (265)
T ss_pred cC
Confidence 43
No 183
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=8.8e-35 Score=291.61 Aligned_cols=210 Identities=25% Similarity=0.323 Sum_probs=154.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++........++.++|++|++...+.
T Consensus 27 ~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~---- 101 (267)
T PRK15112 27 EAVKPLSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLN---- 101 (267)
T ss_pred ceeeeeeEEecCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcC----
Confidence 5899999999998 99999999999999999999999999999999999998755555566789999997421100
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~Qr 357 (602)
+. .+.. +.+............... ..+..+.++.++.. .........+| +|||||
T Consensus 102 -~~----------------~tv~--~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LS--~G~~qr 157 (267)
T PRK15112 102 -PR----------------QRIS--QILDFPLRLNTDLEPEQR---EKQIIETLRQVGLLPDHASYYPHMLA--PGQKQR 157 (267)
T ss_pred -cc----------------hhHH--HHHHHHHHhccCCCHHHH---HHHHHHHHHHcCCChHHHhcCchhcC--HHHHHH
Confidence 00 0000 000000000000000001 11122223333332 22233445677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|||++||+++.+.. ||++++|++|++++.++++++
T Consensus 158 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999998743 7899999999999988 999999999999999998888
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
...
T Consensus 238 ~~~ 240 (267)
T PRK15112 238 LAS 240 (267)
T ss_pred hcC
Confidence 764
No 184
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=5.4e-35 Score=287.01 Aligned_cols=199 Identities=29% Similarity=0.423 Sum_probs=148.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh---HHHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~---~~~~~~i~~v~Q~~~~~~~~ 275 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++|++|++...+
T Consensus 19 ~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~-- 95 (228)
T cd03257 19 KALDDVSFSIKKG-ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL-- 95 (228)
T ss_pred eeecCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhc--
Confidence 5799999999998 9999999999999999999999999999999999999887663 467789999999742110
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHH-HHHHhhcccC-CcccccCCcCCC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQ-LKRLESVSRS-PIYSHFGETVTG 350 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~lsg 350 (602)
+ ...++.+++... ........ ...+. .+.++.++.. .........+|
T Consensus 96 -------~------------------~~~tv~~nl~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS- 147 (228)
T cd03257 96 -------N------------------PRMTIGEQIAEPLRIHGKLSKKE--ARKEAVLLLLVGVGLPEEVLNRYPHELS- 147 (228)
T ss_pred -------C------------------CcCCHHHHHHHHHHhccCCcHHH--HHHHHHHHHHHHCCCChhHhhCCchhcC-
Confidence 0 000111110000 00000000 00000 1222233332 23445556677
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
+|||||++|||||+.+|++|||||||++||+.+.+.+.+.+++..+ ++|||++||+++.+.. ||++++|++|++++
T Consensus 148 -~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 148 -GGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred -HHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 6999999999999999999999999999999999999999988753 7899999999999986 99999999999976
Q ss_pred ec
Q psy3001 428 FD 429 (602)
Q Consensus 428 ~g 429 (602)
.|
T Consensus 227 ~g 228 (228)
T cd03257 227 EG 228 (228)
T ss_pred cC
Confidence 43
No 185
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-35 Score=292.39 Aligned_cols=207 Identities=22% Similarity=0.321 Sum_probs=157.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC--CChHHHhhccceecccchhhhhhc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
..++|+||++.+| |+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|++|++...+
T Consensus 16 ~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~--- 91 (275)
T PRK13639 16 EALKGINFKAEKG-EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL--- 91 (275)
T ss_pred eeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhh---
Confidence 4799999999998 9999999999999999999999999999999999998852 234567889999999842111
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
+ .. ++.+++.... ..... ......+..+.++.++..+........+| +||+
T Consensus 92 ------~-------------~~------tv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~LS--~Gq~ 143 (275)
T PRK13639 92 ------F-------------AP------TVEEDVAFGPLNLGLS-KEEVEKRVKEALKAVGMEGFENKPPHHLS--GGQK 143 (275)
T ss_pred ------c-------------cc------cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHCCCchhhcCChhhCC--HHHH
Confidence 1 00 1111100000 00000 00011122233334444444555566777 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|+++||||||++||+.+...+.+.++++. ++.|||++||+++.+.. ||++++|++|++++.|++++
T Consensus 144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (275)
T PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKE 223 (275)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998875 47899999999999987 99999999999999999988
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
++..
T Consensus 224 ~~~~ 227 (275)
T PRK13639 224 VFSD 227 (275)
T ss_pred HhcC
Confidence 7653
No 186
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.5e-35 Score=295.12 Aligned_cols=205 Identities=19% Similarity=0.313 Sum_probs=153.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC----C-ChHHHhhccceecccchhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT----L-GLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~----~-~~~~~~~~i~~v~Q~~~~~~ 273 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. . +...+++.++|++|++...+
T Consensus 25 ~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 103 (289)
T PRK13645 25 KALNNTSLTFKKN-KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL 103 (289)
T ss_pred ceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence 4799999999998 9999999999999999999999999999999999998752 1 34567889999999742110
Q ss_pred hhccCCceeEeeecccceeeeccccceeeccccccccccc-c--cchhHHHHHHHHHHHHHHhhccc-CCcccccCCcCC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F--CSNLQRFYVATSRQLKRLESVSR-SPIYSHFGETVT 349 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ls 349 (602)
+ ..+ +.+++... . ......... +..+.++.++. ..........+|
T Consensus 104 ---------~-------------~~t------v~enl~~~~~~~~~~~~~~~~---~~~~ll~~~~L~~~~~~~~~~~LS 152 (289)
T PRK13645 104 ---------F-------------QET------IEKDIAFGPVNLGENKQEAYK---KVPELLKLVQLPEDYVKRSPFELS 152 (289)
T ss_pred ---------h-------------hhH------HHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcCCChhHhcCChhhCC
Confidence 0 000 11100000 0 000011111 11122223333 223445556677
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .++|||++||+++.+.. ||++++|++|+++
T Consensus 153 --~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 153 --GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230 (289)
T ss_pred --HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 699999999999999999999999999999999999999998864 37899999999999877 9999999999999
Q ss_pred eecChhHHhhc
Q psy3001 427 EFDSPSVLMKN 437 (602)
Q Consensus 427 ~~g~~~~l~~~ 437 (602)
+.|++++++..
T Consensus 231 ~~g~~~~~~~~ 241 (289)
T PRK13645 231 SIGSPFEIFSN 241 (289)
T ss_pred EeCCHHHHhcC
Confidence 99998887653
No 187
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.6e-34 Score=287.78 Aligned_cols=208 Identities=24% Similarity=0.395 Sum_probs=156.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC-------------hHHHhhccce
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-------------LHTLRSRLTI 264 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~-------------~~~~~~~i~~ 264 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..++ ...+++.+++
T Consensus 13 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 13 LTVLDGLNFSVAAG-EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred eeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 35799999999998 999999999999999999999999999999999999886543 2356789999
Q ss_pred ecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHHHHHHHHHhhcccCCccc
Q psy3001 265 IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVATSRQLKRLESVSRSPIYS 342 (602)
Q Consensus 265 v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 342 (602)
++|++. ++. ..+ +.+++... ....... .....+..+.++.++......
T Consensus 92 v~q~~~-----------~~~------------~~t------v~~nl~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~ 141 (252)
T TIGR03005 92 VFQSFN-----------LFP------------HKT------VLDNVTEAPVLVLGMAR-AEAEKRAMELLDMVGLADKAD 141 (252)
T ss_pred EecCcc-----------cCC------------CCc------HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCChhHhh
Confidence 999732 110 011 11110000 0000000 000111222333344444445
Q ss_pred ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEE
Q psy3001 343 HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLV 419 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~ 419 (602)
.....+| +|||||++|||||+.+|+++||||||++||+.+...+.+.|++..+ +.|+|++||+++.+.. ||++++
T Consensus 142 ~~~~~LS--~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T TIGR03005 142 HMPAQLS--GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCF 219 (252)
T ss_pred cChhhcC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence 5556677 6999999999999999999999999999999999999999988643 7899999999999976 999999
Q ss_pred EeCceEEeecChhHHhhcc
Q psy3001 420 LDKGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 420 l~~G~i~~~g~~~~l~~~~ 438 (602)
|++|++++.|+++++.+..
T Consensus 220 l~~G~i~~~g~~~~~~~~~ 238 (252)
T TIGR03005 220 FDKGRIVEQGKPDEIFRQP 238 (252)
T ss_pred EECCEEEEeCCHHHHhcCC
Confidence 9999999999988886543
No 188
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=5.6e-35 Score=283.91 Aligned_cols=194 Identities=25% Similarity=0.373 Sum_probs=144.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..++.. .+++.++|++|++..
T Consensus 15 ~~il~~is~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~--- 90 (214)
T TIGR02673 15 VAALHDVSLHIRKG-EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRL--- 90 (214)
T ss_pred ceeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhh---
Confidence 35799999999998 99999999999999999999999999999999999999876543 467889999997421
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+. ..+ +.+++... ....... .....+..+.++.++...........+| +|
T Consensus 91 --------~~------------~~t------v~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G 141 (214)
T TIGR02673 91 --------LP------------DRT------VYENVALPLEVRGKKE-REIQRRVGAALRQVGLEHKADAFPEQLS--GG 141 (214)
T ss_pred --------cc------------CCc------HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCChhhhhCChhhCC--HH
Confidence 10 001 11100000 0000000 0001112222333333333344445677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
||||++|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 142 ~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 142 EQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999999999998864 47999999999999987 99999999885
No 189
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=7e-35 Score=283.30 Aligned_cols=192 Identities=26% Similarity=0.339 Sum_probs=145.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++.
T Consensus 15 ~~l~~~sl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~----- 88 (214)
T cd03292 15 AALDGINISISAG-EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFR----- 88 (214)
T ss_pred eeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCch-----
Confidence 4799999999998 99999999999999999999999999999999999998776543 46788999999742
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. ..+ +.+++... ......... .+..+.++.++...........+| +
T Consensus 89 ------~~~------------~~t------~~~~l~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS--~ 139 (214)
T cd03292 89 ------LLP------------DRN------VYENVAFALEVTGVPPREIR---KRVPAALELVGLSHKHRALPAELS--G 139 (214)
T ss_pred ------hcc------------CCc------HHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCCHHHhhCChhhcC--H
Confidence 110 001 11110000 000000011 111222233333333444455677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
|||||++|||||+.+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999998864 47899999999999987 999999999974
No 190
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=285.68 Aligned_cols=206 Identities=24% Similarity=0.390 Sum_probs=154.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH-Hhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++.++|++|++.
T Consensus 16 ~~~l~~~sl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 88 (241)
T PRK10895 16 RRVVEDVSLTVNSG-EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEAS------ 88 (241)
T ss_pred EEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCc------
Confidence 45899999999998 999999999999999999999999999999999999988776544 5678999999732
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++. ..+ +.+++... ....... .....+..+.++.++...........+| +||
T Consensus 89 -----~~~------------~~t------v~enl~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~ 142 (241)
T PRK10895 89 -----IFR------------RLS------VYDNLMAVLQIRDDLSA-EQREDRANELMEEFHIEHLRDSMGQSLS--GGE 142 (241)
T ss_pred -----ccc------------cCc------HHHHHhhhhhcccccCH-HHHHHHHHHHHHHcCCHHHhhcchhhCC--HHH
Confidence 110 001 10100000 0000000 0011111222233333333344455677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.++... +++|+|++||+++.+.. ||++++|++|++++.++++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 222 (241)
T PRK10895 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPT 222 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHH
Confidence 999999999999999999999999999999999999988764 47899999999998877 9999999999999999988
Q ss_pred HHhh
Q psy3001 433 VLMK 436 (602)
Q Consensus 433 ~l~~ 436 (602)
++..
T Consensus 223 ~~~~ 226 (241)
T PRK10895 223 EILQ 226 (241)
T ss_pred HHhc
Confidence 7754
No 191
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=5.9e-35 Score=282.38 Aligned_cols=193 Identities=24% Similarity=0.316 Sum_probs=146.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ..+++.++|++|++.
T Consensus 13 ~~~l~~~~~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~------- 82 (208)
T cd03268 13 KRVLDDISLHVKKG-EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAPG------- 82 (208)
T ss_pred eEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCCc-------
Confidence 35899999999998 99999999999999999999999999999999999987654 456788999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. . .++.+++.... .... ...+..+.++.++...........+| +||||
T Consensus 83 ----~~~------------~------~tv~e~l~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 133 (208)
T cd03268 83 ----FYP------------N------LTARENLRLLARLLGI-----RKKRIDEVLDVVGLKDSAKKKVKGFS--LGMKQ 133 (208)
T ss_pred ----cCc------------c------CcHHHHHHHHHHhcCC-----cHHHHHHHHHHcCCHHHHhhhHhhCC--HHHHH
Confidence 110 0 11111100000 0000 00111122223333333444455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|++||||++.+|++++|||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999998865 47899999999999987 9999999999998653
No 192
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.1e-34 Score=286.25 Aligned_cols=220 Identities=30% Similarity=0.437 Sum_probs=173.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~~~i~~v~Q~~~~~~~ 274 (602)
...++++|++..+| +.+||||+||||||||-.+|.+++++. |+|.++|.++..++..+ +|+.+-+|+|+|..-+.
T Consensus 300 ~~AVd~isl~L~~g-qTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs 377 (534)
T COG4172 300 LRAVDGISLTLRRG-QTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS 377 (534)
T ss_pred eEEeccceeEecCC-CeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence 46788888888888 999999999999999999999999888 99999999999888765 57899999999643221
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~G 353 (602)
|-+. +-..+...+..++ +.. ...++..+..+.+..+++++ ....+++..|| |
T Consensus 378 -----PRmt--------V~qII~EGL~vh~--------~~l----s~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG--G 430 (534)
T COG4172 378 -----PRMT--------VGQIIEEGLRVHE--------PKL----SAAERDQRVIEALEEVGLDPATRNRYPHEFSG--G 430 (534)
T ss_pred -----cccC--------HHHHhhhhhhhcC--------CCC----CHHHHHHHHHHHHHHcCCChhHhhcCCcccCc--c
Confidence 1100 0000000000000 011 11234455566666777765 46778899994 9
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||+|||||++.+|++++||||||+||......+.+.|+++.+ +.+-++||||+..++. ||+|+||++|+|+|.|+
T Consensus 431 QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~ 510 (534)
T COG4172 431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGP 510 (534)
T ss_pred hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCC
Confidence 99999999999999999999999999999999999999998753 6899999999999998 99999999999999999
Q ss_pred hhHHhhcchhHHHHHH
Q psy3001 431 PSVLMKNKASIFYSMA 446 (602)
Q Consensus 431 ~~~l~~~~~~~~~~~~ 446 (602)
.++++.++...|....
T Consensus 511 ~~~if~~P~~~YT~~L 526 (534)
T COG4172 511 TEAVFANPQHEYTRAL 526 (534)
T ss_pred HHHHhcCCCcHHHHHH
Confidence 9999998887776543
No 193
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-34 Score=288.01 Aligned_cols=206 Identities=20% Similarity=0.313 Sum_probs=153.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .....+++.++|++|++.
T Consensus 21 ~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~- 98 (254)
T PRK14273 21 KALNNINIKILKN-SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN- 98 (254)
T ss_pred eeecceeeEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc-
Confidence 4789999999988 99999999999999999999999997 48999999998753 234567889999999742
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc--c--chhHHHHHHHHHHHHHHhhccc----CCcccc
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--C--SNLQRFYVATSRQLKRLESVSR----SPIYSH 343 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~l~~~~~----~~~~~~ 343 (602)
++. .++.+++.... . .............++ .++. ......
T Consensus 99 ----------~~~-------------------~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~l~~~~~~ 146 (254)
T PRK14273 99 ----------PFL-------------------MSIYDNISYGPKIHGTKDKKKLDEIVEQSLK---KSALWNEVKDKLNT 146 (254)
T ss_pred ----------ccc-------------------CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HhCCchhhHHHHhC
Confidence 110 01111100000 0 000001111111112 2211 112333
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| ||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. |||+++|++
T Consensus 147 ~~~~LS--gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~ 224 (254)
T PRK14273 147 NALSLS--GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLN 224 (254)
T ss_pred CcccCC--HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 455677 69999999999999999999999999999999999999999988667899999999999877 999999999
Q ss_pred ceEEeecChhHHhhcchh
Q psy3001 423 GLVVEFDSPSVLMKNKAS 440 (602)
Q Consensus 423 G~i~~~g~~~~l~~~~~~ 440 (602)
|++++.|+++++...+..
T Consensus 225 G~i~~~g~~~~~~~~~~~ 242 (254)
T PRK14273 225 GCIEEESSTDELFFNPKN 242 (254)
T ss_pred CEEEEeCCHHHHHhCCCC
Confidence 999999999988765433
No 194
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-34 Score=287.65 Aligned_cols=205 Identities=21% Similarity=0.280 Sum_probs=153.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecC--CCChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIR--TLGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..+...+++.++|++|++.
T Consensus 17 ~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 17 NHVIKGVDLKIPQN-GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred eeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 34799999999998 99999999999999999999999987 4999999999986 3455567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-----ccchhHHHHHHHHHHHHHHhhcccC----Ccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-----FCSNLQRFYVATSRQLKRLESVSRS----PIY 341 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 341 (602)
++. ..+ +.+++... .............+. ++.++.. ...
T Consensus 96 -----------~~~------------~~t------v~enl~~~~~~~~~~~~~~~~~~~~~~~---l~~~~l~~~~~~~~ 143 (253)
T PRK14267 96 -----------PFP------------HLT------IYDNVAIGVKLNGLVKSKKELDERVEWA---LKKAALWDEVKDRL 143 (253)
T ss_pred -----------cCC------------CCc------HHHHHHHHHHhcCccCCHHHHHHHHHHH---HHHcCCccchhhhh
Confidence 110 000 11100000 000000111111111 2222221 123
Q ss_pred cccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEE
Q psy3001 342 SHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVL 420 (602)
Q Consensus 342 ~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l 420 (602)
......+| +|||||++|||||+.+|++|||||||++||+.+..++.+.|++..+++|+|++||+++.+.. ||++++|
T Consensus 144 ~~~~~~LS--~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 144 NDYPSNLS--GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred ccChhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEE
Confidence 34455667 69999999999999999999999999999999999999999987667899999999999887 9999999
Q ss_pred eCceEEeecChhHHhhc
Q psy3001 421 DKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 421 ~~G~i~~~g~~~~l~~~ 437 (602)
++|++++.|++++++..
T Consensus 222 ~~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 222 YLGKLIEVGPTRKVFEN 238 (253)
T ss_pred ECCEEEEeCCHHHHHhC
Confidence 99999999999887654
No 195
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-34 Score=285.73 Aligned_cols=205 Identities=22% Similarity=0.337 Sum_probs=153.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH-Hhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... +++.++|++|++.
T Consensus 18 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 90 (237)
T PRK11614 18 IQALHEVSLHINQG-EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR------ 90 (237)
T ss_pred ceeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcc------
Confidence 45899999999998 999999999999999999999999999999999999988777654 5778999999732
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
++. .. ++.+++... .............+.++.+.. ...........+| +|||
T Consensus 91 -----~~~------------~~------tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~~~~LS--~G~~ 143 (237)
T PRK11614 91 -----VFS------------RM------TVEENLAMGGFFAERDQFQERIKWVYELFPR--LHERRIQRAGTMS--GGEQ 143 (237)
T ss_pred -----cCC------------CC------cHHHHHHHhhhccChhHHHHHHHHHHHHHHH--HHHHHhCchhhCC--HHHH
Confidence 110 00 011110000 000000111111111221110 1111223345666 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 144 qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999998864 47999999999998877 99999999999999999888
Q ss_pred Hhh
Q psy3001 434 LMK 436 (602)
Q Consensus 434 l~~ 436 (602)
+..
T Consensus 224 ~~~ 226 (237)
T PRK11614 224 LLA 226 (237)
T ss_pred Hhc
Confidence 764
No 196
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=2.6e-34 Score=286.94 Aligned_cols=207 Identities=25% Similarity=0.379 Sum_probs=155.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC-------------ChHHHhhccce
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL-------------GLHTLRSRLTI 264 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~-------------~~~~~~~~i~~ 264 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ....+++.++|
T Consensus 18 ~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 96 (257)
T PRK10619 18 HEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTM 96 (257)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEE
Confidence 45799999999988 99999999999999999999999999999999999987542 12456789999
Q ss_pred ecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccCCcc-
Q psy3001 265 IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRSPIY- 341 (602)
Q Consensus 265 v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~- 341 (602)
++|++. ++. ..++.+++.... ...... .....+..+.++.++.....
T Consensus 97 v~q~~~-----------l~~------------------~~sv~enl~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 97 VFQHFN-----------LWS------------------HMTVLENVMEAPIQVLGLSK-QEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred EecCcc-----------cCC------------------CCcHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCChhhh
Confidence 999732 110 001111100000 000000 00111222333344443332
Q ss_pred cccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEE
Q psy3001 342 SHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLV 419 (602)
Q Consensus 342 ~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~ 419 (602)
......+| +|||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. |||+++
T Consensus 147 ~~~~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~ 224 (257)
T PRK10619 147 GKYPVHLS--GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF 224 (257)
T ss_pred hCCcccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 44456677 699999999999999999999999999999999999999998875 47999999999999987 999999
Q ss_pred EeCceEEeecChhHHhhc
Q psy3001 420 LDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 420 l~~G~i~~~g~~~~l~~~ 437 (602)
|++|++++.|+++++...
T Consensus 225 l~~G~i~~~~~~~~~~~~ 242 (257)
T PRK10619 225 LHQGKIEEEGAPEQLFGN 242 (257)
T ss_pred EECCEEEEeCCHHHhhhC
Confidence 999999999998887654
No 197
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.7e-35 Score=282.44 Aligned_cols=195 Identities=26% Similarity=0.394 Sum_probs=145.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++.++|++|++.
T Consensus 13 ~~~l~~v~~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~~q~~~------- 80 (210)
T cd03269 13 VTALDDISFSVEKG-EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYLPEERG------- 80 (210)
T ss_pred EEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEeccCCc-------
Confidence 35799999999998 9999999999999999999999999999999999987743 45678999999742
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++... ...... ......+..+.++.++..+........+| +||||
T Consensus 81 ----~~~------------~~------tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 135 (210)
T cd03269 81 ----LYP------------KM------KVIDQLVYLAQLKGLK-KEEARRRIDEWLERLELSEYANKRVEELS--KGNQQ 135 (210)
T ss_pred ----CCc------------CC------cHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHcCChHHHhCcHhhCC--HHHHH
Confidence 110 00 111110000 000000 00011122223334444333444556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|++|||||+.+|+++||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 136 rl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 136 KVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998864 46899999999999987 9999999999997653
No 198
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-34 Score=289.39 Aligned_cols=211 Identities=21% Similarity=0.314 Sum_probs=156.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++....
T Consensus 20 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~---- 94 (265)
T PRK10253 20 YTVAENLTVEIPDG-HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPG---- 94 (265)
T ss_pred EEEeeecceEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCC----
Confidence 45799999999988 9999999999999999999999999999999999999988787788889999999843211
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
..+...+-................ ....+..+.++.++...........+| +|||||
T Consensus 95 -------------------~~tv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS--~Gq~qr 151 (265)
T PRK10253 95 -------------------DITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLADQSVDTLS--GGQRQR 151 (265)
T ss_pred -------------------CCcHHHHHHhCcccccccccCCCH--HHHHHHHHHHHHcCCHHHhcCCcccCC--hHHHHH
Confidence 000000000000000000000000 001111122223333333445566677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++||||++.+|++|||||||++||+.+...+.+.|+++.+ +.|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988743 6899999999999987 999999999999999988776
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 43
No 199
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-34 Score=276.32 Aligned_cols=181 Identities=29% Similarity=0.444 Sum_probs=154.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++||||++.+| |+++|||+|||||||+.|+|.|+++|++|+|.++|.++..++...
T Consensus 26 v~avd~Vsf~i~~g-e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~-------------------- 84 (268)
T COG4608 26 VKAVDGVSFSIKEG-ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEE-------------------- 84 (268)
T ss_pred eEEecceeEEEcCC-CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhH--------------------
Confidence 36899999999998 999999999999999999999999999999999998876543111
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Q 356 (602)
...+..+.++.+++.+ ....+++.+|| ||+|
T Consensus 85 ----------------------------------------------~~~~v~elL~~Vgl~~~~~~ryPhelSG--GQrQ 116 (268)
T COG4608 85 ----------------------------------------------RRERVLELLEKVGLPEEFLYRYPHELSG--GQRQ 116 (268)
T ss_pred ----------------------------------------------HHHHHHHHHHHhCCCHHHhhcCCcccCc--hhhh
Confidence 1122333334444433 56778889994 9999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++|||||+.+|++++.|||+|+||.-.+..+...+.++.+ +.|.++||||++.+.. ||||.||..|+|++.|+.++
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHH
Confidence 99999999999999999999999999999999999988753 7899999999999999 99999999999999999999
Q ss_pred HhhcchhHHHHHHH
Q psy3001 434 LMKNKASIFYSMAK 447 (602)
Q Consensus 434 l~~~~~~~~~~~~~ 447 (602)
++.++...|.+..-
T Consensus 197 ~~~~p~HpYTk~Ll 210 (268)
T COG4608 197 VFSNPLHPYTKALL 210 (268)
T ss_pred HhhCCCCHHHHHHH
Confidence 99988888776553
No 200
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=2.4e-34 Score=287.06 Aligned_cols=207 Identities=27% Similarity=0.353 Sum_probs=157.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+
T Consensus 14 ~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~---- 88 (256)
T TIGR03873 14 RLIVDGVDVTAPPG-SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAV---- 88 (256)
T ss_pred EEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCC----
Confidence 45899999999998 9999999999999999999999999999999999999988887788888999999742111
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-c-hh-H-HHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-S-NL-Q-RFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
..+ +.+++..... . .. . .......+..+.++.++...........+| +|
T Consensus 89 -------------------~~t------v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G 141 (256)
T TIGR03873 89 -------------------PLT------VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLS--GG 141 (256)
T ss_pred -------------------CCC------HHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCC--HH
Confidence 000 1000000000 0 00 0 000011112222333333333444556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||++||||++.+|+++||||||++||+.+...+.+.|++..+ +.|+|++||+++.+.. ||+|++|++|++++.|+.
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 221 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPP 221 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCH
Confidence 99999999999999999999999999999999999999988753 6899999999999976 999999999999999988
Q ss_pred hHHhh
Q psy3001 432 SVLMK 436 (602)
Q Consensus 432 ~~l~~ 436 (602)
+++..
T Consensus 222 ~~~~~ 226 (256)
T TIGR03873 222 REVLT 226 (256)
T ss_pred HHhhC
Confidence 77643
No 201
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=1.7e-34 Score=283.30 Aligned_cols=197 Identities=21% Similarity=0.298 Sum_probs=146.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---H-hhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---L-RSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~-~~~i~~v~Q~~~~~~~ 274 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... . ++.++|++|++.
T Consensus 24 ~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~---- 98 (228)
T PRK10584 24 SILTGVELVVKRG-ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFM---- 98 (228)
T ss_pred EEEeccEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccc----
Confidence 4799999999998 999999999999999999999999999999999999998776543 2 367999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. .. ++.+++... ....... .....+..+.++.++...........+| +|
T Consensus 99 -------l~~------------~~------tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G 150 (228)
T PRK10584 99 -------LIP------------TL------NALENVELPALLRGESS-RQSRNGAKALLEQLGLGKRLDHLPAQLS--GG 150 (228)
T ss_pred -------cCC------------Cc------CHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCHhHhhCChhhCC--HH
Confidence 110 00 111110000 0000000 0011122222333343333444556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeecccccccCCeEEEEeCceEEee
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEF 428 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~ 428 (602)
||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. + +.|||++||+++.+..||++++|++|++++.
T Consensus 151 e~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999998864 3 6899999999998866999999999999753
No 202
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-34 Score=287.05 Aligned_cols=205 Identities=21% Similarity=0.298 Sum_probs=152.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCCC--hHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTLG--LHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~~--~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.... ...+++.++|++|++.
T Consensus 25 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 25 KQALKNVSMQIPKN-SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred eeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 35799999999998 99999999999999999999999985 7999999999886432 3456788999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccC----Ccccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRS----PIYSH 343 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 343 (602)
++ .. ++.+++... .......... +..+.++.++.. .....
T Consensus 104 -----------~~-------------~~------tv~enl~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~ 150 (258)
T PRK14268 104 -----------PF-------------PM------SIYDNVAYGPRIHGANKKDLDG---VVENALRSAALWDETSDRLKS 150 (258)
T ss_pred -----------cC-------------cc------cHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcCCCcchhhhhcC
Confidence 11 00 011110000 0000000011 111122222221 12233
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| +|||||++|||||+.+|++|+|||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||++++|++
T Consensus 151 ~~~~LS--gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~ 228 (258)
T PRK14268 151 PALSLS--GGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLM 228 (258)
T ss_pred ChhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 445666 69999999999999999999999999999999999999999987667999999999999977 999999999
Q ss_pred ceEEeecChhHHhhcc
Q psy3001 423 GLVVEFDSPSVLMKNK 438 (602)
Q Consensus 423 G~i~~~g~~~~l~~~~ 438 (602)
|++++.+++++++..+
T Consensus 229 G~i~~~~~~~~~~~~~ 244 (258)
T PRK14268 229 GELIEFGQTRQIFHNP 244 (258)
T ss_pred CEEEEeCCHHHHhcCC
Confidence 9999999998886543
No 203
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.5e-34 Score=283.75 Aligned_cols=205 Identities=26% Similarity=0.383 Sum_probs=150.5
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC----CCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP----ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~----~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++... ...++.++|++|++...+.
T Consensus 2 l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~-- 76 (230)
T TIGR02770 2 VQDLNLSLKRG-EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFN-- 76 (230)
T ss_pred ccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcC--
Confidence 68999999998 99999999999999999999999999 899999999988653 2234689999998431110
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC---CcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS---PIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~lsgs~G 353 (602)
+ ..+.. +.+.... ....... .....+..+.++.++.. .........+| +|
T Consensus 77 ---~----------------~~t~~--~~~~~~~--~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS--~G 129 (230)
T TIGR02770 77 ---P----------------LFTMG--NHAIETL--RSLGKLS--KQARALILEALEAVGLPDPEEVLKKYPFQLS--GG 129 (230)
T ss_pred ---c----------------ccCHH--HHHHHHH--HHcCccH--HHHHHHHHHHHHHcCCCchHHHHhCChhhcC--HH
Confidence 0 00000 0000000 0000000 00111122233333333 22344455677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||++||||++++|++|||||||++||+.+...+.+.++++.+ ++|||++||+++.+.. ||++++|++|++++.++
T Consensus 130 ~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 209 (230)
T TIGR02770 130 MLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGT 209 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988643 6899999999999987 99999999999999999
Q ss_pred hhHHhhc
Q psy3001 431 PSVLMKN 437 (602)
Q Consensus 431 ~~~l~~~ 437 (602)
++++...
T Consensus 210 ~~~~~~~ 216 (230)
T TIGR02770 210 VKEIFYN 216 (230)
T ss_pred HHHHHhC
Confidence 8888654
No 204
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-34 Score=287.12 Aligned_cols=211 Identities=24% Similarity=0.325 Sum_probs=156.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++..
T Consensus 15 ~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~------ 87 (255)
T PRK11231 15 KRILNDLSLSLPTG-KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLT------ 87 (255)
T ss_pred EEEEeeeeeEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCC------
Confidence 45899999999998 99999999999999999999999999999999999998877777788899999997421
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+. ..+...+-................ ....+..+.++.++...........+| +||+||
T Consensus 88 -----~~------------~~tv~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qr 146 (255)
T PRK11231 88 -----PE------------GITVRELVAYGRSPWLSLWGRLSA--EDNARVNQAMEQTRINHLADRRLTDLS--GGQRQR 146 (255)
T ss_pred -----CC------------CccHHHHHHhccchhhhhccCCCH--HHHHHHHHHHHHcCCHHHHcCCcccCC--HHHHHH
Confidence 10 000000000000000000000000 001111222223333333444556677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
++||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..++++++.
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999999999999999999998864 47899999999999987 9999999999999988877764
Q ss_pred h
Q psy3001 436 K 436 (602)
Q Consensus 436 ~ 436 (602)
.
T Consensus 227 ~ 227 (255)
T PRK11231 227 T 227 (255)
T ss_pred C
Confidence 3
No 205
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=1e-34 Score=281.83 Aligned_cols=192 Identities=29% Similarity=0.445 Sum_probs=141.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++. .+++.++|++|++....
T Consensus 12 ~~~l~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~---- 81 (213)
T cd03235 12 HPVLEDVSFEVKPG-EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRRSIDR---- 81 (213)
T ss_pred EEeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEecccccccc----
Confidence 45799999999998 999999999999999999999999999999999998764 46788999999743110
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccc------hhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS------NLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
.+ .. ++.+++...... .... ....+..+.++.++..+........+|
T Consensus 82 ----~~-------------~~------tv~e~l~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS-- 134 (213)
T cd03235 82 ----DF-------------PI------SVRDVVLMGLYGHKGLFRRLSK--ADKAKVDEALERVGLSELADRQIGELS-- 134 (213)
T ss_pred ----CC-------------CC------cHHHHHHhccccccccccCCCH--HHHHHHHHHHHHcCCHHHHhCCcccCC--
Confidence 00 00 111110000000 0000 001111222223333333344456677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
||||||++|||||+.+|++|||||||++||+.+...+.+.+++.. +++|+|++||+++++.. ||++++|++| +++
T Consensus 135 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~ 211 (213)
T cd03235 135 GGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVA 211 (213)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eee
Confidence 699999999999999999999999999999999999999998865 57899999999999987 9999999886 444
No 206
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-34 Score=286.74 Aligned_cols=206 Identities=20% Similarity=0.331 Sum_probs=152.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .....+++.++|++|++.
T Consensus 20 ~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~- 97 (253)
T PRK14242 20 QALHDISLEFEQN-QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN- 97 (253)
T ss_pred eeecceeEEEeCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC-
Confidence 4789999999988 9999999999999999999999974 589999999998864 344567889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++ .. ++.+++.... ............+..+.++.++.. ........
T Consensus 98 ----------~~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 148 (253)
T PRK14242 98 ----------PF-------------PK------SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESAL 148 (253)
T ss_pred ----------CC-------------cC------cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcc
Confidence 11 00 1111100000 000000000011111122222221 12233455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|++|++
T Consensus 149 ~LS--gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i 226 (253)
T PRK14242 149 GLS--GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKL 226 (253)
T ss_pred cCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEE
Confidence 677 69999999999999999999999999999999999999999988667899999999999977 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.|+++++...
T Consensus 227 ~~~g~~~~~~~~ 238 (253)
T PRK14242 227 IEVGPTEQIFTR 238 (253)
T ss_pred EEeCCHHHHHcC
Confidence 999998887654
No 207
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.8e-34 Score=283.55 Aligned_cols=203 Identities=24% Similarity=0.358 Sum_probs=151.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH-Hhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++.++|++|++.
T Consensus 13 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 85 (230)
T TIGR03410 13 SHILRGVSLEVPKG-EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGRE------ 85 (230)
T ss_pred eEEecceeeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCc------
Confidence 35899999999998 999999999999999999999999999999999999988776554 4678999999742
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. ..+... .+.... ......... ...+.++.+.. ...........+| +||||
T Consensus 86 -----~~~------------~~tv~~--~l~~~~-~~~~~~~~~---~~~~~l~~~~~--l~~~~~~~~~~LS--~G~~q 138 (230)
T TIGR03410 86 -----IFP------------RLTVEE--NLLTGL-AALPRRSRK---IPDEIYELFPV--LKEMLGRRGGDLS--GGQQQ 138 (230)
T ss_pred -----ccC------------CCcHHH--HHHHHH-HhcCcchHH---HHHHHHHHHHh--HHHHhhCChhhCC--HHHHH
Confidence 110 000000 000000 000000000 01111111110 1112334455667 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++|||||+++|++++|||||++||+.+..++.+.|++..+ ++|+|++||+++.+.. ||+++++++|++++.+++++
T Consensus 139 rv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 139 QLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988653 6899999999999987 99999999999999998877
Q ss_pred H
Q psy3001 434 L 434 (602)
Q Consensus 434 l 434 (602)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
No 208
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.4e-35 Score=263.98 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=163.6
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVI 275 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~ 275 (602)
.+..+++||+++.+| |++|+.|||||||||.+.++.|+.+|++|+|.+||.|++.++.... |-.|+|+||++.
T Consensus 16 kr~Vv~~Vsl~v~~G-EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~S----- 89 (243)
T COG1137 16 KRKVVNDVSLEVNSG-EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEAS----- 89 (243)
T ss_pred CeeeeeeeeEEEcCC-cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccch-----
Confidence 456899999999998 9999999999999999999999999999999999999999998765 457999999843
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccc--cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT--PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+|- .- ++++++.. +.............+....++.+....+....+.+|| ||
T Consensus 90 ------IFr------------~L------tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLS--GG 143 (243)
T COG1137 90 ------IFR------------KL------TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLS--GG 143 (243)
T ss_pred ------Hhh------------cC------cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccc--cc
Confidence 221 11 11111110 0000000000111111223334455555666677777 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||+|+.|||||+.+|+.++||||++++||.+...|++.++.++. |..|++..|+..+... |||.+++.+|++...|++
T Consensus 144 ERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p 223 (243)
T COG1137 144 ERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSP 223 (243)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCH
Confidence 99999999999999999999999999999999999999988754 7899999999877766 999999999999999999
Q ss_pred hHHhhcch
Q psy3001 432 SVLMKNKA 439 (602)
Q Consensus 432 ~~l~~~~~ 439 (602)
+++..++.
T Consensus 224 ~ei~~n~~ 231 (243)
T COG1137 224 EEIVNNED 231 (243)
T ss_pred HHHhcChh
Confidence 99987643
No 209
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=3.7e-34 Score=282.78 Aligned_cols=207 Identities=34% Similarity=0.473 Sum_probs=154.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 16 ~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~------- 87 (238)
T cd03249 16 VPILKGLSLTIPPG-KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPV------- 87 (238)
T ss_pred ccceeceEEEecCC-CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchh-------
Confidence 35799999999998 9999999999999999999999999999999999999887777777888999999742
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccc-hhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS-NLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~ 352 (602)
++ ..+ +.+++...... .......... ...+.+..+ +...........+| +
T Consensus 88 ----~~-------------~~t------v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS--~ 142 (238)
T cd03249 88 ----LF-------------DGT------IAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLS--G 142 (238)
T ss_pred ----hh-------------hhh------HHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCC--H
Confidence 11 000 00000000000 0000000000 001111111 11222334455677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.++.+
T Consensus 143 G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~ 222 (238)
T cd03249 143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHD 222 (238)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998876679999999999998779999999999999988877
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
++...
T Consensus 223 ~~~~~ 227 (238)
T cd03249 223 ELMAQ 227 (238)
T ss_pred HHhhc
Confidence 76543
No 210
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-34 Score=298.62 Aligned_cols=198 Identities=22% Similarity=0.363 Sum_probs=155.4
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC----ChHHHhhccceecccchhhhhhccC
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL----GLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~----~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... .....++.++|++|++.
T Consensus 16 ~vsl~i~~G-e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~-------- 86 (352)
T PRK11144 16 TVNLTLPAQ-GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR-------- 86 (352)
T ss_pred EEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcc--------
Confidence 899999998 99999999999999999999999999999999999988643 23345788999999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+|. ..++.+++.... .. ....+..+.++.++..+........+| ||||||+
T Consensus 87 ---l~~------------------~~tv~enl~~~~----~~--~~~~~~~~~l~~~gl~~~~~~~~~~LS--gGq~qRv 137 (352)
T PRK11144 87 ---LFP------------------HYKVRGNLRYGM----AK--SMVAQFDKIVALLGIEPLLDRYPGSLS--GGEKQRV 137 (352)
T ss_pred ---cCC------------------CCcHHHHHHhhh----hh--hhHHHHHHHHHHcCCchhhhCCcccCC--HHHHHHH
Confidence 110 011111111000 00 011122333445555555566677788 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++++.. ||++++|++|++++.|++++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999999999999999999999999999988643 6899999999999987 9999999999999999999987
Q ss_pred hcc
Q psy3001 436 KNK 438 (602)
Q Consensus 436 ~~~ 438 (602)
..+
T Consensus 218 ~~p 220 (352)
T PRK11144 218 ASS 220 (352)
T ss_pred hCc
Confidence 754
No 211
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.4e-34 Score=271.19 Aligned_cols=165 Identities=32% Similarity=0.500 Sum_probs=140.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|-.
T Consensus 12 ~~~l~~~~~~i~~G-~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l-------- 82 (180)
T cd03214 12 RTVLDDLSLSIEAG-EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQAL-------- 82 (180)
T ss_pred eeeEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHH--------
Confidence 35899999999998 999999999999999999999999999999999999998888777788888888610
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
....+. +........+| +|||||
T Consensus 83 ------------------------------------~~~gl~-------------------~~~~~~~~~LS--~G~~qr 105 (180)
T cd03214 83 ------------------------------------ELLGLA-------------------HLADRPFNELS--GGERQR 105 (180)
T ss_pred ------------------------------------HHcCCH-------------------hHhcCCcccCC--HHHHHH
Confidence 000000 00112234566 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
++|||||+.+|+++||||||++||+++...+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 106 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988754 6899999999999876 999999999998754
No 212
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-34 Score=283.61 Aligned_cols=204 Identities=28% Similarity=0.380 Sum_probs=153.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC------CChHHHhhccceecccchhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT------LGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~------~~~~~~~~~i~~v~Q~~~~~ 272 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....+++.++|++|++.
T Consensus 16 ~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~-- 92 (242)
T PRK11124 16 QALFDITLDCPQG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN-- 92 (242)
T ss_pred eeEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcc--
Confidence 4799999999998 9999999999999999999999999999999999998731 223566789999999732
Q ss_pred hhhccCCceeEeeecccceeeeccccceeecccccccccc-cc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg 350 (602)
++. . .++.+++.. .. ...... .....+..+.++.++...........+|
T Consensus 93 ---------~~~------------~------~tv~e~i~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS- 143 (242)
T PRK11124 93 ---------LWP------------H------LTVQQNLIEAPCRVLGLSK-DQALARAEKLLERLRLKPYADRFPLHLS- 143 (242)
T ss_pred ---------ccC------------C------CcHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCChhhhhCChhhCC-
Confidence 110 0 011111000 00 000000 0011122233334444444455556677
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+|||||++|||||+.+|+++||||||++||+.+...+.+.+++..+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 144 -~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 -GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred -HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 6999999999999999999999999999999999999999988753 7999999999999987 999999999999999
Q ss_pred cChhHHh
Q psy3001 429 DSPSVLM 435 (602)
Q Consensus 429 g~~~~l~ 435 (602)
++++++.
T Consensus 223 ~~~~~~~ 229 (242)
T PRK11124 223 GDASCFT 229 (242)
T ss_pred CCHHHhc
Confidence 8877653
No 213
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-34 Score=278.78 Aligned_cols=192 Identities=23% Similarity=0.355 Sum_probs=142.9
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCcee
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVF 282 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~ 282 (602)
|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++|++|++. +
T Consensus 16 ~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~-----------~ 81 (211)
T cd03298 16 HFDLTFAQG-EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENN-----------L 81 (211)
T ss_pred ceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccc-----------c
Confidence 899999998 9999999999999999999999999999999999999876554 3578999999742 1
Q ss_pred EeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHH
Q psy3001 283 IFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLAR 362 (602)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAr 362 (602)
+. ..+ +.+++................+..+.++.++..+........+| +|||||++|||
T Consensus 82 ~~------------~~t------v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrv~ia~ 141 (211)
T cd03298 82 FA------------HLT------VEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELS--GGERQRVALAR 141 (211)
T ss_pred CC------------CCc------HHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCC--HHHHHHHHHHH
Confidence 10 001 11110000000000000001112222333343333444556677 69999999999
Q ss_pred HHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 363 ALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 363 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
||+.+|++|||||||++||+.++..+.+.++++. .++|+|++||+++.+.. ||++++|++|++++.
T Consensus 142 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 142 VLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 9999999999999999999999999999998864 37899999999999987 999999999999764
No 214
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-34 Score=281.81 Aligned_cols=205 Identities=35% Similarity=0.525 Sum_probs=153.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 17 ~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~-------- 87 (229)
T cd03254 17 PVLKDINFSIKPG-ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTF-------- 87 (229)
T ss_pred ccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCch--------
Confidence 4799999999998 9999999999999999999999999999999999999888777788899999999742
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHH-HH-HHHhhc--ccCCcccccCCcCCCChh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSR-QL-KRLESV--SRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~l~~~--~~~~~~~~~~~~lsgs~G 353 (602)
++ ..+...+ + ..... ............ .+ +.++.. +...........+| +|
T Consensus 88 ---~~-------------~~tv~~~--~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS--~G 143 (229)
T cd03254 88 ---LF-------------SGTIMEN--I----RLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLS--QG 143 (229)
T ss_pred ---hh-------------hhHHHHH--H----hccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCC--HH
Confidence 11 0011000 0 00000 000011000000 01 111111 11222333455677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|+++..++.++
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~ 223 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDE 223 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999998866899999999999987799999999999998888766
Q ss_pred Hhh
Q psy3001 434 LMK 436 (602)
Q Consensus 434 l~~ 436 (602)
+..
T Consensus 224 ~~~ 226 (229)
T cd03254 224 LLA 226 (229)
T ss_pred HHh
Confidence 643
No 215
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.3e-34 Score=276.07 Aligned_cols=185 Identities=50% Similarity=0.732 Sum_probs=146.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 22 ~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~-------- 92 (207)
T cd03369 22 PVLKNVSFKVKAG-EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPT-------- 92 (207)
T ss_pred ccccCceEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCc--------
Confidence 4788888888888 9999999999999999999999999999999999999988887788899999999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
++ ..+ +.+++........ .+..+.++ .......+| +||+||+
T Consensus 93 ---~~-------------~~t------v~~~l~~~~~~~~-------~~~~~~l~-------~~~~~~~LS--~G~~qrv 134 (207)
T cd03369 93 ---LF-------------SGT------IRSNLDPFDEYSD-------EEIYGALR-------VSEGGLNLS--QGQRQLL 134 (207)
T ss_pred ---cc-------------Ccc------HHHHhcccCCCCH-------HHHHHHhh-------ccCCCCcCC--HHHHHHH
Confidence 21 111 1111000000000 01111111 233455667 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
+|||||+.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999999999999999999999998766899999999999987799999999999988765
No 216
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=262.70 Aligned_cols=212 Identities=25% Similarity=0.343 Sum_probs=160.2
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
.++-.+++||+..++| |+.||+||||||||||+|.|+|...|++|++.++|.++.++++.++.++-+++||+...-|-+
T Consensus 12 ~Gr~ll~~vsl~~~pG-ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 12 AGRRLLDGVSLDLRPG-EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ecceeccCcceeccCC-cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 4566799999999998 999999999999999999999999999999999999999999999999999999975433311
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
.. +..... ..+ -........+......+. +...+...+....-..|| ||||
T Consensus 91 tv-------------------~eVV~m-Gr~----p~~~g~~~~e~~~i~~~a---la~~d~~~la~R~y~~LS--GGEq 141 (259)
T COG4559 91 TV-------------------QEVVQM-GRI----PHRSGREPEEDERIAAQA---LAATDLSGLAGRDYRTLS--GGEQ 141 (259)
T ss_pred EH-------------------HHHHHh-ccc----ccccCCCchhhHHHHHHH---HHHcChhhhhccchhhcC--chHH
Confidence 00 000000 000 000000000111111111 223333333444445677 5999
Q ss_pred HHHHHHHHHhh------CCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 356 QLICLARALLR------KTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 356 Qrl~lAral~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
|||.+||.|.+ ++++|+||||||+||......+.+..+++. ++..|+.|-||++.... ||||++|.+||++.
T Consensus 142 QRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a 221 (259)
T COG4559 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA 221 (259)
T ss_pred HHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee
Confidence 99999999987 345999999999999999999999999875 57899999999999987 99999999999999
Q ss_pred ecChhHHhhc
Q psy3001 428 FDSPSVLMKN 437 (602)
Q Consensus 428 ~g~~~~l~~~ 437 (602)
.|++++.+..
T Consensus 222 ~g~p~~vlt~ 231 (259)
T COG4559 222 SGSPQDVLTD 231 (259)
T ss_pred cCCHHHhcCH
Confidence 9999998764
No 217
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-34 Score=281.85 Aligned_cols=201 Identities=23% Similarity=0.325 Sum_probs=150.0
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCcee
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVF 282 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~ 282 (602)
|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..... .++.++|++|++. +
T Consensus 17 ~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~-----------~ 82 (232)
T PRK10771 17 RFDLTVERG-ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSMLFQENN-----------L 82 (232)
T ss_pred eeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEEEecccc-----------c
Confidence 899999888 9999999999999999999999999999999999998876543 2567999999732 1
Q ss_pred EeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHH
Q psy3001 283 IFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLAR 362 (602)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAr 362 (602)
+. .. ++.+++................+..+.++.++..+........+| +|||||++|||
T Consensus 83 ~~------------~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrv~lar 142 (232)
T PRK10771 83 FS------------HL------TVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLS--GGQRQRVALAR 142 (232)
T ss_pred cc------------CC------cHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCC--HHHHHHHHHHH
Confidence 10 00 111110000000000000011122223333444334455556677 69999999999
Q ss_pred HHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhhc
Q psy3001 363 ALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 363 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
|++.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 143 al~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 143 CLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999988643 7899999999999987 999999999999999988877654
No 218
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=3.3e-34 Score=269.90 Aligned_cols=163 Identities=29% Similarity=0.496 Sum_probs=139.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++|++|++
T Consensus 16 ~~l~~i~~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~--------- 84 (178)
T cd03247 16 QVLKNLSLELKQG-EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLNQRP--------- 84 (178)
T ss_pred cceEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEEEccCC---------
Confidence 4799999999998 99999999999999999999999999999999999988665 566788899999962
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
.++ . .++.+ .+ ...+| +|||||+
T Consensus 85 --~~~-------------~------~tv~~-------------------------~i---------~~~LS--~G~~qrv 107 (178)
T cd03247 85 --YLF-------------D------TTLRN-------------------------NL---------GRRFS--GGERQRL 107 (178)
T ss_pred --eee-------------c------ccHHH-------------------------hh---------cccCC--HHHHHHH
Confidence 211 0 00000 00 33566 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeec
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFD 429 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g 429 (602)
+||||++.+|++|||||||++||+.+.+.+.+.+++..++.|+|++||+++.+..||++++|++|++++.|
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999998876679999999999998779999999999997643
No 219
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.5e-34 Score=285.00 Aligned_cols=203 Identities=23% Similarity=0.343 Sum_probs=152.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+...+++.++|++|++.
T Consensus 27 ~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~- 104 (260)
T PRK10744 27 HALKNINLDIAKN-QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT- 104 (260)
T ss_pred EEeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc-
Confidence 5799999999988 9999999999999999999999986 589999999998853 345677889999999742
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc--cc--chhHHHHHHHHHHHHHHhhcccC----Ccccc
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FC--SNLQRFYVATSRQLKRLESVSRS----PIYSH 343 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 343 (602)
++ ..+ +.+++... .. ........ +..+.++..+.. .....
T Consensus 105 ----------~~-------------~~t------v~~nl~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 105 ----------PF-------------PMS------IYDNIAFGVRLFEKLSRAEMDE---RVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred ----------cC-------------cCc------HHHHHhhhHhhcCCCCHHHHHH---HHHHHHHHcCCChhhHHHHhc
Confidence 11 000 10100000 00 00000011 111222222221 12334
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| +|||||++|||||+.+|++|||||||++||+.+++.+.+.|++..++.|+|++||+++.+.. ||++++|++
T Consensus 153 ~~~~LS--~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 230 (260)
T PRK10744 153 SGYSLS--GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYL 230 (260)
T ss_pred CCCCCC--HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 455677 69999999999999999999999999999999999999999988667899999999999977 999999999
Q ss_pred ceEEeecChhHHhhc
Q psy3001 423 GLVVEFDSPSVLMKN 437 (602)
Q Consensus 423 G~i~~~g~~~~l~~~ 437 (602)
|++++.++++++...
T Consensus 231 G~i~~~g~~~~~~~~ 245 (260)
T PRK10744 231 GELIEFGNTDTIFTK 245 (260)
T ss_pred CEEEEeCCHHHHHhC
Confidence 999999998887654
No 220
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-34 Score=284.81 Aligned_cols=220 Identities=24% Similarity=0.333 Sum_probs=154.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ +..++|++|++.
T Consensus 18 ~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 90 (255)
T PRK11300 18 LLAVNNVNLEVREQ-EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVR------ 90 (255)
T ss_pred EEEEEeeeeEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcc------
Confidence 45899999999998 9999999999999999999999999999999999999987765554 446889999742
Q ss_pred cCCceeEee-ecccceeeeccccceeeccc-ccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFV-IVPVSVLYFFIQVSLIFTED-VKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++.. .+.....+..... ...+ ............. ......+..+.++.++...........+| +||
T Consensus 91 -----~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~LS--~G~ 158 (255)
T PRK11300 91 -----LFREMTVIENLLVAQHQQ---LKTGLFSGLLKTPAFRRA--ESEALDRAATWLERVGLLEHANRQAGNLA--YGQ 158 (255)
T ss_pred -----cCCCCcHHHHHHHhhhcc---ccchhhhhhccccccccc--hhHHHHHHHHHHHhCChhhhhhCChhhCC--HHH
Confidence 1110 0000000000000 0000 0000000000000 00001111222233334344455566777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|||++||+++.+.. ||++++|++|+++..+++
T Consensus 159 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 238 (255)
T PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCH
Confidence 9999999999999999999999999999999999999988643 6899999999999987 999999999999999988
Q ss_pred hHHhh
Q psy3001 432 SVLMK 436 (602)
Q Consensus 432 ~~l~~ 436 (602)
+++..
T Consensus 239 ~~~~~ 243 (255)
T PRK11300 239 EEIRN 243 (255)
T ss_pred HHHhh
Confidence 77654
No 221
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=7e-34 Score=280.52 Aligned_cols=206 Identities=32% Similarity=0.479 Sum_probs=155.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 14 ~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~------- 85 (236)
T cd03253 14 RPVLKDVSFTIPAG-KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTV------- 85 (236)
T ss_pred CceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCCh-------
Confidence 34799999999998 9999999999999999999999999999999999999988888888889999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~ 352 (602)
++ ..+. .+++..... ........... ...+.+..+ +...........+| +
T Consensus 86 ----~~-------------~~tv------~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS--~ 140 (236)
T cd03253 86 ----LF-------------NDTI------GYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLS--G 140 (236)
T ss_pred ----hh-------------cchH------HHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCC--H
Confidence 21 1111 111000000 00000000000 001111111 11222333455677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++..++.|+|++||+++.+..||++++|++|++++.++.+
T Consensus 141 G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~ 220 (236)
T cd03253 141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHE 220 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHH
Confidence 99999999999999999999999999999999999999998876688999999999999779999999999999988887
Q ss_pred HHhh
Q psy3001 433 VLMK 436 (602)
Q Consensus 433 ~l~~ 436 (602)
++..
T Consensus 221 ~~~~ 224 (236)
T cd03253 221 ELLA 224 (236)
T ss_pred HHhh
Confidence 7654
No 222
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=4.1e-34 Score=279.29 Aligned_cols=199 Identities=56% Similarity=0.796 Sum_probs=150.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 18 ~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~-------- 88 (221)
T cd03244 18 PVLKNISFSIKPG-EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPV-------- 88 (221)
T ss_pred ccccceEEEECCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCc--------
Confidence 4799999999998 9999999999999999999999999999999999999988888888999999999742
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-HH-HHHh--hcccCCcccccCCcCCCChhh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-QL-KRLE--SVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~--~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++ ..+...+ + .........+......+ .+ +.+. ..+...........+| +||
T Consensus 89 ---l~-------------~~tv~en--l----~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS--~G~ 144 (221)
T cd03244 89 ---LF-------------SGTIRSN--L----DPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLS--VGQ 144 (221)
T ss_pred ---cc-------------cchHHHH--h----CcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCC--HHH
Confidence 11 1111110 0 00000000111110000 00 1111 0111222234556677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
|||++|||||+.+|+++||||||++||+.++..+.+.+++..++.|+|++||+++.+..||++++|++|++++.++
T Consensus 145 ~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 145 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999999999999999998766789999999999998899999999999988764
No 223
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-34 Score=280.36 Aligned_cols=205 Identities=24% Similarity=0.362 Sum_probs=154.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|+++...+. .++.+++++|++.
T Consensus 13 ~~il~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~------- 82 (232)
T cd03300 13 FVALDGVSLDIKEG-EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTVFQNYA------- 82 (232)
T ss_pred eeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEEecccc-------
Confidence 35899999999998 9999999999999999999999999999999999998876554 3678999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. ..+ +.+++.... ..... ......+....++.++..+........+| +||||
T Consensus 83 ----~~~------------~~t------~~~nl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~lS--~G~~q 137 (232)
T cd03300 83 ----LFP------------HLT------VFENIAFGLRLKKLP-KAEIKERVAEALDLVQLEGYANRKPSQLS--GGQQQ 137 (232)
T ss_pred ----cCC------------CCc------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCchhhcCChhhCC--HHHHH
Confidence 110 001 111100000 00000 00001111222233444444555556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++||||++.+|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++++.. ||++++|++|++++.+++++
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~ 217 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEE 217 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999988753 7899999999999877 99999999999999998877
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+...
T Consensus 218 ~~~~ 221 (232)
T cd03300 218 IYEE 221 (232)
T ss_pred HHhC
Confidence 7653
No 224
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=2.9e-34 Score=278.80 Aligned_cols=195 Identities=27% Similarity=0.420 Sum_probs=145.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC--CChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++++||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....+++.++|++|++.
T Consensus 13 ~~~l~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~----- 86 (213)
T cd03262 13 FHVLKGIDLTVKKG-EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFN----- 86 (213)
T ss_pred eEeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccc-----
Confidence 35799999999998 9999999999999999999999999999999999998853 344567889999999742
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. ..+ +.+++.... ...... .....+..+.++.++..+........+| +|
T Consensus 87 ------~~~------------~~t------~~e~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G 139 (213)
T cd03262 87 ------LFP------------HLT------VLENITLAPIKVKGMSK-AEAEERALELLEKVGLADKADAYPAQLS--GG 139 (213)
T ss_pred ------cCC------------CCc------HHHHHHhHHHHhcCCCH-HHHHHHHHHHHHHcCCHhHhhhCccccC--HH
Confidence 110 001 111100000 000000 0011112222333333333445556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
||||++||||++.+|++|||||||++||+.+.+++.+.++++. .++|+|++||+++.+.. ||++++|++|++
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999999875 47899999999999987 999999999974
No 225
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.4e-34 Score=284.49 Aligned_cols=207 Identities=21% Similarity=0.289 Sum_probs=152.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+...+++.++|++|++.
T Consensus 32 ~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 32 KQALFDVDLDIPEK-TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred EEEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 35788888888888 99999999999999999999999975 89999999999864 345567889999999742
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhH-HHHHHHHHHHHHHhhcccCC----ccccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQ-RFYVATSRQLKRLESVSRSP----IYSHF 344 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~~~~~~~----~~~~~ 344 (602)
++ .. ++.+++.... ..... .......+..+.++.++... .....
T Consensus 111 -----------~~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 160 (267)
T PRK14235 111 -----------PF-------------PK------SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEP 160 (267)
T ss_pred -----------CC-------------CC------cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCC
Confidence 11 00 0111100000 00000 00000011112222222221 22334
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
...+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.++.|+|++||+++.+.. ||++++|++|
T Consensus 161 ~~~LS--gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G 238 (267)
T PRK14235 161 GTGLS--GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLG 238 (267)
T ss_pred cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECC
Confidence 55677 69999999999999999999999999999999999999999987667899999999999977 9999999999
Q ss_pred eEEeecChhHHhhc
Q psy3001 424 LVVEFDSPSVLMKN 437 (602)
Q Consensus 424 ~i~~~g~~~~l~~~ 437 (602)
++++.++++++...
T Consensus 239 ~i~~~g~~~~~~~~ 252 (267)
T PRK14235 239 NLVEVGDTEKMFTN 252 (267)
T ss_pred EEEEeCCHHHHHhC
Confidence 99999998887654
No 226
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.5e-34 Score=280.09 Aligned_cols=203 Identities=25% Similarity=0.408 Sum_probs=153.9
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..... .++.+++++|++.
T Consensus 14 ~l~~is~~i~~G-e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~~q~~~--------- 81 (235)
T cd03299 14 KLKNVSLEVERG-DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYVPQNYA--------- 81 (235)
T ss_pred eeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEEeecCc---------
Confidence 599999999998 9999999999999999999999999999999999999876554 3678999999732
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
++. ..+ +.+++.... ..... ......+..+.++.++..+........+| +|||||+
T Consensus 82 --~~~------------~~t------~~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrl 138 (235)
T cd03299 82 --LFP------------HMT------VYKNIAYGLKKRKVD-KKEIERKVLEIAEMLGIDHLLNRKPETLS--GGEQQRV 138 (235)
T ss_pred --cCC------------Ccc------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCChhHHhcCcccCC--HHHHHHH
Confidence 110 001 111100000 00000 00011112223334444444455556677 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+||||++.+|++++|||||++||+.+.+++.+.+++... ++|+|++||+++.+.. ||++++|++|++++.++++++.
T Consensus 139 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 139 AIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999988643 7899999999999887 9999999999999999887775
Q ss_pred hc
Q psy3001 436 KN 437 (602)
Q Consensus 436 ~~ 437 (602)
..
T Consensus 219 ~~ 220 (235)
T cd03299 219 KK 220 (235)
T ss_pred hC
Confidence 54
No 227
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=4.7e-34 Score=296.85 Aligned_cols=201 Identities=20% Similarity=0.306 Sum_probs=154.2
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC----hHHHhhccceecccchhhhhhccC
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG----LHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~----~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ....++.++|++|++.
T Consensus 15 ~isl~i~~G-ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~-------- 85 (354)
T TIGR02142 15 DADFTLPGQ-GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR-------- 85 (354)
T ss_pred EEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCc--------
Confidence 899999998 999999999999999999999999999999999999886532 2356778999999732
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+|. . .++.+++..... .... ....+..+.++.++..+........+| ||||||
T Consensus 86 ---l~~------------~------~tv~enl~~~~~~~~~~---~~~~~~~~~l~~~gL~~~~~~~~~~LS--gGqkqR 139 (354)
T TIGR02142 86 ---LFP------------H------LSVRGNLRYGMKRARPS---ERRISFERVIELLGIGHLLGRLPGRLS--GGEKQR 139 (354)
T ss_pred ---cCC------------C------CcHHHHHHHHhhccChh---HHHHHHHHHHHHcCChhHhcCChhhCC--HHHHHH
Confidence 110 0 011111100000 0000 011122233334455555566667788 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|+|||||++||+.+++.+.+.|+++.+ ++|+|++||+++++.. ||++++|++|+++..|+++++
T Consensus 140 valAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999999999999988643 6899999999999987 999999999999999998888
Q ss_pred hhcc
Q psy3001 435 MKNK 438 (602)
Q Consensus 435 ~~~~ 438 (602)
+..+
T Consensus 220 ~~~~ 223 (354)
T TIGR02142 220 WASP 223 (354)
T ss_pred hcCc
Confidence 7653
No 228
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=4e-34 Score=267.91 Aligned_cols=157 Identities=31% Similarity=0.534 Sum_probs=137.1
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|++++|++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++
T Consensus 16 ~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--------- 85 (173)
T cd03246 16 PVLRNVSFSIEPG-ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDD--------- 85 (173)
T ss_pred cceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCC---------
Confidence 4799999999998 999999999999999999999999999999999999998888888889999999973
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
.++ . .++. + .+ +| +|||||+
T Consensus 86 --~~~-------------~------~tv~----------------------~---~l------------LS--~G~~qrv 105 (173)
T cd03246 86 --ELF-------------S------GSIA----------------------E---NI------------LS--GGQRQRL 105 (173)
T ss_pred --ccc-------------c------CcHH----------------------H---HC------------cC--HHHHHHH
Confidence 111 0 0000 0 00 45 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceE
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLV 425 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i 425 (602)
+|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+..||++++|++|++
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999999999999998874 47899999999998866999999999874
No 229
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.4e-34 Score=283.86 Aligned_cols=208 Identities=20% Similarity=0.320 Sum_probs=152.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+...+++.+++++|++.
T Consensus 17 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 17 FHAVEDVNLNIEPR-SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred EeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 35799999999998 99999999999999999999999974 79999999998853 345567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 345 (602)
. +. .. ++.+++.... ............+..+.++.++.. .......
T Consensus 96 ~-----------~~------------~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 146 (258)
T PRK14241 96 P-----------FP------------TM------SIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPG 146 (258)
T ss_pred c-----------CC------------CC------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc
Confidence 1 10 00 1111100000 000000000001111112222221 1233445
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe---
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD--- 421 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~--- 421 (602)
..+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+
T Consensus 147 ~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~ 224 (258)
T PRK14241 147 GGLS--GGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEA 224 (258)
T ss_pred ccCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeccc
Confidence 5677 69999999999999999999999999999999999999999887667899999999999877 99999997
Q ss_pred ---CceEEeecChhHHhhc
Q psy3001 422 ---KGLVVEFDSPSVLMKN 437 (602)
Q Consensus 422 ---~G~i~~~g~~~~l~~~ 437 (602)
+|++++.+++++++..
T Consensus 225 ~~~~g~i~~~~~~~~~~~~ 243 (258)
T PRK14241 225 TGKPGRLVEIDDTEKIFSN 243 (258)
T ss_pred CCCCceEEecCCHHHHHhC
Confidence 8999999999887654
No 230
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=4.3e-34 Score=277.28 Aligned_cols=196 Identities=23% Similarity=0.359 Sum_probs=145.9
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... .+++.++|++|++.
T Consensus 14 ~~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~---------- 80 (213)
T TIGR01277 14 PMEFDLNVADG-EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSMLFQENN---------- 80 (213)
T ss_pred ceeeEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEEeccCc----------
Confidence 56999999998 999999999999999999999999999999999999886543 35778999999742
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICL 360 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~l 360 (602)
++. ..+ +.+++................+..+.++.++...........+| +|||||++|
T Consensus 81 -~~~------------~~t------~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrl~l 139 (213)
T TIGR01277 81 -LFA------------HLT------VRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLS--GGQRQRVAL 139 (213)
T ss_pred -cCC------------CCc------HHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCC--HHHHHHHHH
Confidence 110 001 11110000000000000011111222333344333445556777 699999999
Q ss_pred HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 361 Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||++.+|+++||||||++||+.+...+.+.+++..+ +.|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 140 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 140 ARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999988643 6899999999999887 99999999999988764
No 231
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-34 Score=283.08 Aligned_cols=192 Identities=24% Similarity=0.354 Sum_probs=147.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++. .+++.++|++|++.
T Consensus 25 ~~il~~isl~i~~G-e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~------- 91 (257)
T PRK11247 25 RTVLNQLDLHIPAG-QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTRLMFQDAR------- 91 (257)
T ss_pred cceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceEEEecCcc-------
Confidence 34789999999888 999999999999999999999999999999999997653 45778999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
++ . ..++.+++...... .. ..+..+.++.++..+........+| ||||||
T Consensus 92 ----l~-------------~-----~~tv~enl~~~~~~---~~---~~~~~~~l~~~gl~~~~~~~~~~LS--gGqkqr 141 (257)
T PRK11247 92 ----LL-------------P-----WKKVIDNVGLGLKG---QW---RDAALQALAAVGLADRANEWPAALS--GGQKQR 141 (257)
T ss_pred ----CC-------------C-----CCcHHHHHHhcccc---hH---HHHHHHHHHHcCChhHhcCChhhCC--HHHHHH
Confidence 11 0 00111111100000 00 1122223334444444455566777 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|++|+++..++.+
T Consensus 142 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 142 VALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999999999998863 36899999999999877 9999999999999877654
No 232
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6e-34 Score=283.42 Aligned_cols=210 Identities=23% Similarity=0.352 Sum_probs=153.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCCCC--hHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTLG--LHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~~~--~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++...+ ...+++.++|++|++.
T Consensus 18 ~~~l~~is~~i~~G-e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 18 KQILFDINLDIYKR-EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred eeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 45799999999998 9999999999999999999999986 47999999999876543 2356789999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC----cccccCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP----IYSHFGE 346 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~ 346 (602)
++ ..+...+-.. ............... .+..+.++.++..+ .......
T Consensus 97 -----------~~-------------~~tv~~ni~~-~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~~~ 148 (251)
T PRK14244 97 -----------PF-------------PKSIYDNVAY-GPKLHGLAKNKKKLD---EIVEKSLTSVGLWEELGDRLKDSAF 148 (251)
T ss_pred -----------cc-------------cCCHHHHHHH-HHHhcCCCCCHHHHH---HHHHHHHHHcCCCchhhhHhhcChh
Confidence 11 0010000000 000000000000111 11112222333321 1233445
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++
T Consensus 149 ~LS--~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 149 ELS--GGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRI 226 (251)
T ss_pred hCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 667 69999999999999999999999999999999999999999887668999999999999987 999999999999
Q ss_pred EeecChhHHhhcc
Q psy3001 426 VEFDSPSVLMKNK 438 (602)
Q Consensus 426 ~~~g~~~~l~~~~ 438 (602)
++.+++++++..+
T Consensus 227 ~~~~~~~~~~~~~ 239 (251)
T PRK14244 227 VEYNTTQEIFKNP 239 (251)
T ss_pred EEeCCHHHHhcCC
Confidence 9999988887653
No 233
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.4e-34 Score=284.29 Aligned_cols=208 Identities=20% Similarity=0.329 Sum_probs=151.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+...+++.++|++|++.
T Consensus 26 ~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 26 FEAVKNVFCDIPRG-KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred EEEEcceEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 34688888888887 9999999999999999999999987 689999999998753 456677889999999742
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchh-HHHHHHHHHHHHHHhhc-ccCCcccccCCc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNL-QRFYVATSRQLKRLESV-SRSPIYSHFGET 347 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ 347 (602)
++ ..+ +.+++.... .... ........+.++.+... ............
T Consensus 105 -----------l~-------------~~t------v~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 154 (269)
T PRK14259 105 -----------PF-------------PKS------IYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYS 154 (269)
T ss_pred -----------cc-------------hhh------HHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCccc
Confidence 11 001 111000000 0000 00001111112211100 001123344456
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC----
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK---- 422 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~---- 422 (602)
+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.++.|+|++||+++.+.. ||++++|++
T Consensus 155 LS--~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~ 232 (269)
T PRK14259 155 LS--GGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVE 232 (269)
T ss_pred CC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccc
Confidence 77 69999999999999999999999999999999999999999988667899999999999987 999999996
Q ss_pred -------ceEEeecChhHHhhcc
Q psy3001 423 -------GLVVEFDSPSVLMKNK 438 (602)
Q Consensus 423 -------G~i~~~g~~~~l~~~~ 438 (602)
|++++.|++++++..+
T Consensus 233 ~~~~g~~g~~~~~~~~~~~~~~~ 255 (269)
T PRK14259 233 GGSGGKVGYLVEFNETKKIFNSP 255 (269)
T ss_pred cccccccceEEEeCCHHHHHhCc
Confidence 6789999998887643
No 234
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=9.1e-34 Score=279.41 Aligned_cols=204 Identities=24% Similarity=0.385 Sum_probs=153.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++|+||++.
T Consensus 14 ~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~~~q~~~-------- 82 (237)
T TIGR00968 14 QALDDVNLEVPTG-SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGFVFQHYA-------- 82 (237)
T ss_pred eeeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEEEecChh--------
Confidence 4899999999998 9999999999999999999999999999999999999876543 4678999999742
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
++. ..+. .+++.... ...... .....+..+.++.++..+........+| +||+||
T Consensus 83 ---~~~------------~~t~------~enl~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~lS--~G~~qr 138 (237)
T TIGR00968 83 ---LFK------------HLTV------RDNIAFGLEIRKHPK-AKIKARVEELLELVQLEGLGDRYPNQLS--GGQRQR 138 (237)
T ss_pred ---hcc------------CCcH------HHHHHhHHHhcCCCH-HHHHHHHHHHHHHcCCHhHhhCChhhCC--HHHHHH
Confidence 110 0011 11000000 000000 0001111222333333333444445666 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+++|++++|||||++||+.+++.+.+.+++..+ ++|+|++||+++.+.. ||++++|++|++++.++++++
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999988654 6899999999999877 999999999999999998887
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
++.
T Consensus 219 ~~~ 221 (237)
T TIGR00968 219 YDH 221 (237)
T ss_pred HcC
Confidence 654
No 235
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=8.6e-34 Score=282.77 Aligned_cols=210 Identities=20% Similarity=0.282 Sum_probs=153.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee-----cCCCChHHH----hhccceecccc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD-----IRTLGLHTL----RSRLTIIPQVL 269 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~-----~~~~~~~~~----~~~i~~v~Q~~ 269 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.+ +...+.... ++.+++++|++
T Consensus 17 ~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 17 KGCRDVSFDLYPG-EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP 95 (253)
T ss_pred eEeecceEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence 4699999999998 9999999999999999999999999999999999987 666555432 46799999974
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcC
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETV 348 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l 348 (602)
...+ . ......+++............... ..+..+.++.++.. .........+
T Consensus 96 ~~~~---------~--------------~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~l~~l~l~~~~~~~~~~~L 149 (253)
T TIGR02323 96 RDGL---------R--------------MRVSAGANIGERLMAIGARHYGNI---RAAAHDWLEEVEIDPTRIDDLPRAF 149 (253)
T ss_pred cccc---------C--------------ccccHHHHHHHHHHHhcccchHHH---HHHHHHHHHHcCCChhhhhcCchhc
Confidence 2110 0 000000000000000000000001 11222233344433 2344455667
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
| +|||||++|||||+.+|++|||||||++||+.+.+++.+.+++.. .+.|+|++||+++.+.. ||++++|++|++
T Consensus 150 S--gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 150 S--GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227 (253)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7 699999999999999999999999999999999999999998863 37899999999999987 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.++++++...
T Consensus 228 ~~~~~~~~~~~~ 239 (253)
T TIGR02323 228 VESGLTDQVLDD 239 (253)
T ss_pred EEECCHHHHhcC
Confidence 999998887654
No 236
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-33 Score=283.01 Aligned_cols=208 Identities=22% Similarity=0.297 Sum_probs=153.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC--C---CCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE--P---ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~--~---~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .....+++.++|++|++.
T Consensus 25 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 25 HHALKNINLSIPEN-EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred eeeEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 35799999999998 9999999999999999999999997 3 59999999998863 345567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC----CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS----PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 345 (602)
++ .. ++.+++... .............+..+.++.++.. .......
T Consensus 104 -----------~~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~ 153 (259)
T PRK14274 104 -----------PF-------------PQ------SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA 153 (259)
T ss_pred -----------cc-------------cc------CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc
Confidence 11 00 111110000 0000000000001111112222221 1223445
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
..+| +|||||++|||||+.+|++|+|||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|+
T Consensus 154 ~~LS--~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 231 (259)
T PRK14274 154 LSLS--GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGE 231 (259)
T ss_pred ccCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCE
Confidence 5666 69999999999999999999999999999999999999999988667899999999999887 99999999999
Q ss_pred EEeecChhHHhhcc
Q psy3001 425 VVEFDSPSVLMKNK 438 (602)
Q Consensus 425 i~~~g~~~~l~~~~ 438 (602)
+++.|++++++...
T Consensus 232 i~~~g~~~~~~~~~ 245 (259)
T PRK14274 232 LVECNDTNKMFSNP 245 (259)
T ss_pred EEEECCHHHHhhCC
Confidence 99999999886543
No 237
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.2e-34 Score=253.43 Aligned_cols=211 Identities=25% Similarity=0.354 Sum_probs=163.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC-------------ChHHHhhcccee
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL-------------GLHTLRSRLTII 265 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~-------------~~~~~~~~i~~v 265 (602)
-.++.||++-++| +++.|+|.|||||||++++|.=+..|+.|.|.++|..++-. ....+|...++|
T Consensus 20 eVLKGvSL~A~~G-dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mV 98 (256)
T COG4598 20 EVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMV 98 (256)
T ss_pred hhhcceeeecCCC-CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHh
Confidence 3689999999988 99999999999999999999999999999999999876421 233577899999
Q ss_pred cccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccC
Q psy3001 266 PQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFG 345 (602)
Q Consensus 266 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 345 (602)
+|+...+ ...+++- ..+ ..++..+ ... ...+..+....+..++.......++
T Consensus 99 FQ~FNLW----sHmtvLe--------------NVi--EaPvhVL-----g~~---k~ea~e~Ae~~L~kVGi~ek~~~YP 150 (256)
T COG4598 99 FQHFNLW----SHMTVLE--------------NVI--EAPVHVL-----GVS---KAEAIERAEKYLAKVGIAEKADAYP 150 (256)
T ss_pred hhhcchh----HHHHHHH--------------HHH--hcchHhh-----cCC---HHHHHHHHHHHHHHhCchhhhhcCc
Confidence 9973322 1111110 000 0011000 000 1122233344455666666566778
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
..+| |||+||++|||||+.+|+++++|||||+|||+-..++.+.++++. +|+|.++|||.+.+.++ +.++++|++|
T Consensus 151 ~~LS--GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G 228 (256)
T COG4598 151 AHLS--GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQG 228 (256)
T ss_pred cccC--chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecc
Confidence 8888 599999999999999999999999999999999999999999875 58999999999999999 8999999999
Q ss_pred eEEeecChhHHhhcchh
Q psy3001 424 LVVEFDSPSVLMKNKAS 440 (602)
Q Consensus 424 ~i~~~g~~~~l~~~~~~ 440 (602)
.|-+.|+|++++.++..
T Consensus 229 ~iEE~G~P~qvf~nP~S 245 (256)
T COG4598 229 KIEEEGPPEQVFGNPQS 245 (256)
T ss_pred eecccCChHHHhcCCCC
Confidence 99999999999987644
No 238
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=1.1e-33 Score=283.74 Aligned_cols=209 Identities=25% Similarity=0.374 Sum_probs=156.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++...+
T Consensus 25 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~- 102 (268)
T PRK10419 25 QTVLNNVSLSLKSG-ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV- 102 (268)
T ss_pred eeeEeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc-
Confidence 45799999999998 99999999999999999999999999999999999998876553 46789999999742111
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGN 351 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs 351 (602)
+ . ..++.+++.... ..... ......+..+.++.++.. .........+|
T Consensus 103 --------~-------------~-----~~t~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS-- 153 (268)
T PRK10419 103 --------N-------------P-----RKTVREIIREPLRHLLSLD-KAERLARASEMLRAVDLDDSVLDKRPPQLS-- 153 (268)
T ss_pred --------C-------------C-----CCCHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHcCCChhHhhCCCccCC--
Confidence 0 0 000000000000 00000 001111122223333333 23444556677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+|||||++|||||+.+|++|||||||++||+.+...+.+.++++.+ +.|+|++||+++.+.. ||++++|++|++++.
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 6999999999999999999999999999999999999999988653 7899999999999987 999999999999999
Q ss_pred cChhHHhhc
Q psy3001 429 DSPSVLMKN 437 (602)
Q Consensus 429 g~~~~l~~~ 437 (602)
|+++++...
T Consensus 234 g~~~~~~~~ 242 (268)
T PRK10419 234 QPVGDKLTF 242 (268)
T ss_pred CChhhccCC
Confidence 999887654
No 239
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=281.33 Aligned_cols=208 Identities=21% Similarity=0.306 Sum_probs=153.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc---cCC--CCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI---IEP--ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~---~~~--~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+ ++| ++|+|.++|.++... +...+++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEK-SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 34799999999998 99999999999999999999997 455 589999999998653 34567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 345 (602)
++ .. ++.+++.... ............+..+.++.++.. .......
T Consensus 95 -----------~~-------------~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 144 (250)
T PRK14245 95 -----------PF-------------PK------SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESA 144 (250)
T ss_pred -----------cC-------------cc------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCc
Confidence 11 00 0111000000 000000000001111222233322 1234445
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
..+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|++|+
T Consensus 145 ~~LS--~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~ 222 (250)
T PRK14245 145 FALS--GGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGE 222 (250)
T ss_pred ccCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCE
Confidence 5677 69999999999999999999999999999999999999999988667999999999999977 99999999999
Q ss_pred EEeecChhHHhhcc
Q psy3001 425 VVEFDSPSVLMKNK 438 (602)
Q Consensus 425 i~~~g~~~~l~~~~ 438 (602)
+++.|+++++.+..
T Consensus 223 ~~~~~~~~~~~~~~ 236 (250)
T PRK14245 223 MVEYDDTKKIFTNP 236 (250)
T ss_pred EEEECCHHHHhcCC
Confidence 99999999887653
No 240
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-33 Score=281.23 Aligned_cols=206 Identities=21% Similarity=0.314 Sum_probs=153.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC--C---CCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE--P---ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~--~---~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ | ++|+|.++|.++... ....+++.++|++|++.
T Consensus 17 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 17 NHAVKDVSMDFPEN-SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred eeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 34799999999998 9999999999999999999999986 4 689999999988643 34567888999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc---c-chhHHHHHHHHHHHHHHhhcccC----Cccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF---C-SNLQRFYVATSRQLKRLESVSRS----PIYS 342 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 342 (602)
++. ..+ +.+++.... . ....... .+..+.++.++.. ....
T Consensus 96 -----------~~~------------~~t------v~enl~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14256 96 -----------PFP------------AMS------IYDNVIAGYKLNGRVNRSEAD---EIVESSLKRVALWDEVKDRLK 143 (252)
T ss_pred -----------CCC------------cCc------HHHHHHhHHHhcCCCCHHHHH---HHHHHHHHHcCCchhhhHHhh
Confidence 110 001 111100000 0 0000000 1111222222221 1223
Q ss_pred ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe
Q psy3001 343 HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
.....+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+
T Consensus 144 ~~~~~LS--~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14256 144 SNAMELS--GGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFY 221 (252)
T ss_pred CCcCcCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEE
Confidence 3455677 69999999999999999999999999999999999999999988767899999999999977 99999999
Q ss_pred CceEEeecChhHHhhcc
Q psy3001 422 KGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 422 ~G~i~~~g~~~~l~~~~ 438 (602)
+|++++.++++++...+
T Consensus 222 ~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14256 222 MGDLVECGETKKIFTTP 238 (252)
T ss_pred CCEEEEeCCHHHHHhCC
Confidence 99999999998886553
No 241
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-33 Score=283.46 Aligned_cols=211 Identities=23% Similarity=0.323 Sum_probs=156.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC--------CceEEECCeecCCCChHHHhhccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA--------DGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~--------~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~ 269 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|+ +|+|.++|.++...+...+++.++|++|++
T Consensus 14 ~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 14 RAILRDLSLRIEPG-RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred EeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 45899999999998 999999999999999999999999998 999999999998877778888899999974
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCC
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVT 349 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls 349 (602)
...+ ..+...+-................ ....+..+.++.++...........+|
T Consensus 93 ~~~~-----------------------~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS 147 (272)
T PRK13547 93 QPAF-----------------------AFSAREIVLLGRYPHARRAGALTH--RDGEIAWQALALAGATALVGRDVTTLS 147 (272)
T ss_pred CCCC-----------------------CCcHHHHHhhcccccccccccCCH--HHHHHHHHHHHHcCcHhhhcCCcccCC
Confidence 2111 000000000000000000000000 001112222333444444445556677
Q ss_pred CChhhHHHHHHHHHHh---------hCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeE
Q psy3001 350 GNVGQRQLICLARALL---------RKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRV 417 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i 417 (602)
+|||||++|||||+ .+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||++
T Consensus 148 --gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i 225 (272)
T PRK13547 148 --GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRI 225 (272)
T ss_pred --HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 69999999999999 59999999999999999999999999988643 6899999999999986 9999
Q ss_pred EEEeCceEEeecChhHHhh
Q psy3001 418 LVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 418 ~~l~~G~i~~~g~~~~l~~ 436 (602)
++|++|++++.++++++..
T Consensus 226 ~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 226 AMLADGAIVAHGAPADVLT 244 (272)
T ss_pred EEEECCeEEEecCHHHHcC
Confidence 9999999999998877643
No 242
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.6e-34 Score=282.95 Aligned_cols=196 Identities=21% Similarity=0.291 Sum_probs=145.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... +..++|++|++.
T Consensus 14 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v~q~~~------- 80 (255)
T PRK11248 14 KPALEDINLTLESG-ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVVFQNEG------- 80 (255)
T ss_pred eeeEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEEeCCCc-------
Confidence 34799999999998 99999999999999999999999999999999999987642 235899999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++.... ...... .....+..+.++.++..+........+| |||||
T Consensus 81 ----~~~------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS--gGq~q 135 (255)
T PRK11248 81 ----LLP------------WR------NVQDNVAFGLQLAGVEK-MQRLEIAHQMLKKVGLEGAEKRYIWQLS--GGQRQ 135 (255)
T ss_pred ----cCC------------CC------cHHHHHHhHHHHcCCCH-HHHHHHHHHHHHHcCChhHhhCChhhCC--HHHHH
Confidence 110 00 1111100000 000000 0011122233334444444445566777 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEe--CceEEeecCh
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLD--KGLVVEFDSP 431 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~--~G~i~~~g~~ 431 (602)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 136 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999998863 37999999999999987 99999998 5999887654
No 243
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-33 Score=284.30 Aligned_cols=207 Identities=20% Similarity=0.324 Sum_probs=150.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++... +...+++.++|++|++.
T Consensus 34 ~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 112 (268)
T PRK14248 34 KRAVNDISMDIEKH-AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112 (268)
T ss_pred ceeeeceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc
Confidence 34688888888887 9999999999999999999999864 7999999999988643 34467789999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 345 (602)
++. . ++.+++.... ...............+.+...+.. .......
T Consensus 113 -----------~~~-------------~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 162 (268)
T PRK14248 113 -----------PFP-------------K------SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSA 162 (268)
T ss_pred -----------cCc-------------c------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc
Confidence 110 0 0111000000 000000000000111111122211 1123345
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
..+| +|||||++|||||+.+|++|||||||++||+.+...+.+.++++.+++|||++||+++.+.. ||++++|++|+
T Consensus 163 ~~LS--gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~ 240 (268)
T PRK14248 163 LSLS--GGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGD 240 (268)
T ss_pred ccCC--HHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCE
Confidence 5677 69999999999999999999999999999999999999999988667899999999999877 99999999999
Q ss_pred EEeecChhHHhhc
Q psy3001 425 VVEFDSPSVLMKN 437 (602)
Q Consensus 425 i~~~g~~~~l~~~ 437 (602)
+++.++++++...
T Consensus 241 i~~~~~~~~~~~~ 253 (268)
T PRK14248 241 LVEYDQTEQIFTS 253 (268)
T ss_pred EEEeCCHHHHHhC
Confidence 9999998887654
No 244
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-33 Score=281.73 Aligned_cols=207 Identities=23% Similarity=0.314 Sum_probs=152.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+...+++.+++++|++.
T Consensus 17 ~~~l~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 17 YEALHGISLDFEEK-ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred eeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 34799999999998 9999999999999999999999997 479999999998854 334567888999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 345 (602)
++ .. ++.+++.... ............+..+.++.++.. .......
T Consensus 96 -----------~~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 145 (251)
T PRK14251 96 -----------PF-------------PF------SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNA 145 (251)
T ss_pred -----------cC-------------CC------cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccCh
Confidence 11 00 1111100000 000000000001111112222221 1123344
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
..+| +|||||++|||||+++|+++||||||++||+.+...+.+.+++..++.|+|+|||+++.+.. ||++++|++|+
T Consensus 146 ~~LS--~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~ 223 (251)
T PRK14251 146 QAFS--GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGD 223 (251)
T ss_pred hhCC--HHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCE
Confidence 5666 69999999999999999999999999999999999999999987667899999999999887 99999999999
Q ss_pred EEeecChhHHhhc
Q psy3001 425 VVEFDSPSVLMKN 437 (602)
Q Consensus 425 i~~~g~~~~l~~~ 437 (602)
+++.++++++...
T Consensus 224 i~~~~~~~~~~~~ 236 (251)
T PRK14251 224 LIEAGPTEEMFIA 236 (251)
T ss_pred EEEeCCHHHHHhC
Confidence 9999998887654
No 245
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.9e-34 Score=280.56 Aligned_cols=196 Identities=23% Similarity=0.351 Sum_probs=144.8
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..++++|++.
T Consensus 1 l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~---------- 64 (230)
T TIGR01184 1 LKGVNLTIQQG-EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYS---------- 64 (230)
T ss_pred CCceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcc----------
Confidence 47899999998 9999999999999999999999999999999999998876443 2379999732
Q ss_pred eeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
++. . .++.+++... ....... .....+..+.++.++...........+| ||||||
T Consensus 65 -l~~------------~------~tv~e~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~qr 122 (230)
T TIGR01184 65 -LLP------------W------LTVRENIALAVDRVLPDLSK-SERRAIVEEHIALVGLTEAADKRPGQLS--GGMKQR 122 (230)
T ss_pred -cCC------------C------CCHHHHHHHHHHhcccCCCH-HHHHHHHHHHHHHcCCHHHHcCChhhCC--HHHHHH
Confidence 110 0 0111110000 0000000 0001111222333333333444556677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+...+
T Consensus 123 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 999999999999999999999999999999999998864 36899999999999887 999999999999988876554
No 246
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.3e-33 Score=279.93 Aligned_cols=208 Identities=21% Similarity=0.207 Sum_probs=149.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc--CCCCceEEECCeecCCCChHHH-hhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII--EPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~--~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|++ +|++|+|.++|.++...+.... +..++|++|++..
T Consensus 13 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~--- 88 (243)
T TIGR01978 13 KEILKGVNLTVKKG-EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEE--- 88 (243)
T ss_pred EEEEeccceEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccc---
Confidence 45799999999998 999999999999999999999995 7999999999999987776554 4458999997431
Q ss_pred hccCCceeEeeecccceeeeccccceeecccc-ccccc--ccc-cchhHHHHHHHHHHHHHHhhcccC-CcccccCC-cC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV-KPLII--TPF-CSNLQRFYVATSRQLKRLESVSRS-PIYSHFGE-TV 348 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~l 348 (602)
+.. .+...+-.. ..... ... ........ .+..+.++.++.. ........ .+
T Consensus 89 --------~~~------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~~L 145 (243)
T TIGR01978 89 --------IPG------------VSNLEFLRSALNARRSARGEEPLDLLDFL---KLLKAKLALLGMDEEFLNRSVNEGF 145 (243)
T ss_pred --------cCC------------cCHHHHHHHHHHHhhcccccccccHHHHH---HHHHHHHHHcCCchhhcccccccCc
Confidence 100 000000000 00000 000 00000111 1122222333332 12222222 36
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc--CCeEEEEeCceE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID--SDRVLVLDKGLV 425 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~--~d~i~~l~~G~i 425 (602)
| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|||++||+++.+.. ||++++|++|++
T Consensus 146 S--~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i 223 (243)
T TIGR01978 146 S--GGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRI 223 (243)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEE
Confidence 6 699999999999999999999999999999999999999998875 46899999999999976 799999999999
Q ss_pred EeecChhHH
Q psy3001 426 VEFDSPSVL 434 (602)
Q Consensus 426 ~~~g~~~~l 434 (602)
++.|+++++
T Consensus 224 ~~~g~~~~~ 232 (243)
T TIGR01978 224 VKSGDVELA 232 (243)
T ss_pred EEecCHHHh
Confidence 998887754
No 247
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-33 Score=280.26 Aligned_cols=206 Identities=23% Similarity=0.361 Sum_probs=151.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+...+++.++|++|++.
T Consensus 17 ~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~- 94 (250)
T PRK14240 17 QALKKINLDIEEN-QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN- 94 (250)
T ss_pred eeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc-
Confidence 4799999999998 99999999999999999999999863 69999999998864 345567889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccc-cccccccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKP-LIITPFCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++. .+.. +.+.. ....... ..........+.++ ..... ........
T Consensus 95 ----------~~~-------------~t~~--~ni~~~~~~~~~~-~~~~~~~~~~~~l~---~~~l~~~l~~~~~~~~~ 145 (250)
T PRK14240 95 ----------PFP-------------MSIY--DNVAYGPRTHGIK-DKKKLDEIVEKSLK---GAALWDEVKDRLKKSAL 145 (250)
T ss_pred ----------cCc-------------ccHH--HHHHHHHHhcCCC-CHHHHHHHHHHHHH---HcCCchhhHHHHhcCCC
Confidence 110 0000 00000 0000000 00001111111122 21111 12234455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|++|+|||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||++++|++|++
T Consensus 146 ~LS--~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i 223 (250)
T PRK14240 146 GLS--GGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEI 223 (250)
T ss_pred CCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEE
Confidence 677 69999999999999999999999999999999999999999988667899999999999887 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.++++++...
T Consensus 224 ~~~~~~~~~~~~ 235 (250)
T PRK14240 224 VEFGDTVDLFTN 235 (250)
T ss_pred EEeCCHHHHHhC
Confidence 999998887654
No 248
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=283.16 Aligned_cols=210 Identities=20% Similarity=0.295 Sum_probs=151.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .....+++.++|++|++.
T Consensus 38 ~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~- 115 (271)
T PRK14238 38 HALKNINLDIHEN-EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN- 115 (271)
T ss_pred ceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc-
Confidence 4688888888887 9999999999999999999999997 699999999998853 345567889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhh-cccCCcccccCCcCCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES-VSRSPIYSHFGETVTG 350 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~lsg 350 (602)
++.. +.. +.+....................+.++.+.. .............+|
T Consensus 116 ----------~~~~-------------tv~--eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LS- 169 (271)
T PRK14238 116 ----------PFPK-------------SIY--DNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLS- 169 (271)
T ss_pred ----------cccc-------------cHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCC-
Confidence 2100 100 0000000000000000000111111111100 001112234455677
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
+|||||++|||||+.+|++|||||||++||+.+..++.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 170 -gGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 170 -GGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYD 248 (271)
T ss_pred -HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeC
Confidence 69999999999999999999999999999999999999999988667999999999999887 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
+++++...
T Consensus 249 ~~~~~~~~ 256 (271)
T PRK14238 249 DTDKIFSN 256 (271)
T ss_pred CHHHHHcC
Confidence 99888654
No 249
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-33 Score=281.73 Aligned_cols=207 Identities=20% Similarity=0.320 Sum_probs=152.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+...+++.++|++|++.
T Consensus 33 ~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 33 KEAIKGIDMQFEKN-KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred eeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence 35788888888887 9999999999999999999999996 589999999998854 335567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 345 (602)
++. . ++.+++.... ............+..+.++.++.. .......
T Consensus 112 -----------~~~-------------~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~ 161 (267)
T PRK14237 112 -----------PFA-------------K------SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSA 161 (267)
T ss_pred -----------ccc-------------c------cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCc
Confidence 110 0 1111100000 000000000001111112222221 1234445
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
..+| +|||||++|||||+++|++|||||||++||+.+...+.+.|+++.++.|+|++||+++.+.. ||++++|++|+
T Consensus 162 ~~LS--~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 239 (267)
T PRK14237 162 LTLS--GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGD 239 (267)
T ss_pred ccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 5677 69999999999999999999999999999999999999999988667899999999999877 99999999999
Q ss_pred EEeecChhHHhhc
Q psy3001 425 VVEFDSPSVLMKN 437 (602)
Q Consensus 425 i~~~g~~~~l~~~ 437 (602)
+++.|+++++...
T Consensus 240 i~~~g~~~~~~~~ 252 (267)
T PRK14237 240 LIEYDKTRNIFTN 252 (267)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999888654
No 250
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.6e-33 Score=279.28 Aligned_cols=201 Identities=19% Similarity=0.278 Sum_probs=153.1
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++|+||++.+| ++++|+|+||||||||+++|+|++++ +|+|.++|.++...+...+++.++|++|++...+
T Consensus 11 ~l~~vsl~i~~G-ei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~------ 82 (248)
T PRK03695 11 RLGPLSAEVRAG-EILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPF------ 82 (248)
T ss_pred eecceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCC------
Confidence 689999999998 99999999999999999999999864 9999999999988888788888999999742111
Q ss_pred ceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
..+ +.+++... .......... +..+.++.++...........+| +|||||
T Consensus 83 -----------------~~t------v~~nl~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS--~G~~qr 134 (248)
T PRK03695 83 -----------------AMP------VFQYLTLHQPDKTRTEAVAS---ALNEVAEALGLDDKLGRSVNQLS--GGEWQR 134 (248)
T ss_pred -----------------Ccc------HHHHHHhcCccCCCcHHHHH---HHHHHHHHcCCHhHhcCCcccCC--HHHHHH
Confidence 000 00000000 0000000111 11222333333333455566677 699999
Q ss_pred HHHHHHHhh-------CCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 358 ICLARALLR-------KTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 358 l~lAral~~-------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
++|||||+. +|++|||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.
T Consensus 135 v~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 135 VRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred HHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999998 679999999999999999999999998875 47899999999998877 999999999999999
Q ss_pred cChhHHhh
Q psy3001 429 DSPSVLMK 436 (602)
Q Consensus 429 g~~~~l~~ 436 (602)
|+++++..
T Consensus 215 g~~~~~~~ 222 (248)
T PRK03695 215 GRRDEVLT 222 (248)
T ss_pred CCHHHHhC
Confidence 98877643
No 251
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.9e-33 Score=279.80 Aligned_cols=204 Identities=20% Similarity=0.299 Sum_probs=152.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++... ....+++.++|++|++.
T Consensus 17 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 17 KQALNDINLPIYEN-KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred eeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 35799999999998 99999999999999999999999875 799999999998643 33466888999999742
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccc---hhHHHHHHHHHHHHHHhhcccC----Cccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCS---NLQRFYVATSRQLKRLESVSRS----PIYS 342 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~~~~~----~~~~ 342 (602)
++ ..+ +.+++... ... ..........+.++ ..+.. ....
T Consensus 96 -----------~~-------------~~t------v~enl~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~ 142 (251)
T PRK14270 96 -----------PF-------------PMS------IYDNVAYGPRIHGIKDKKELDKIVEWALK---KAALWDEVKDDLK 142 (251)
T ss_pred -----------cC-------------CCc------HHHHHHhHHHhcCCCcHHHHHHHHHHHHH---HcCCchhhhhHhh
Confidence 11 000 10100000 000 00000111111222 22211 1233
Q ss_pred ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe
Q psy3001 343 HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
.....+| +|||||++||||++.+|++|||||||++||+.+...+.+.|++..++.|+|++||+++.+.. ||++++|+
T Consensus 143 ~~~~~LS--~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~ 220 (251)
T PRK14270 143 KSALKLS--GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFL 220 (251)
T ss_pred CCcccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEE
Confidence 3455666 69999999999999999999999999999999999999999987667899999999999887 99999999
Q ss_pred CceEEeecChhHHhhc
Q psy3001 422 KGLVVEFDSPSVLMKN 437 (602)
Q Consensus 422 ~G~i~~~g~~~~l~~~ 437 (602)
+|++++.++++++...
T Consensus 221 ~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 221 MGDLIEFNKTEKIFLE 236 (251)
T ss_pred CCeEEEeCCHHHHhcC
Confidence 9999999999888654
No 252
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=1.7e-33 Score=274.65 Aligned_cols=198 Identities=29% Similarity=0.470 Sum_probs=144.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 17 ~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~------- 88 (220)
T cd03245 17 IPALDNVSLTIRAG-EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVT------- 88 (220)
T ss_pred cccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCc-------
Confidence 35799999999998 9999999999999999999999999999999999999887777777889999999742
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHH-HH-HHHhhc--ccCCcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSR-QL-KRLESV--SRSPIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~l~~~--~~~~~~~~~~~~lsgs~ 352 (602)
++.. + +.+++... .............. .+ +.+... +...........+| +
T Consensus 89 ----~~~~-------------t------v~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LS--g 143 (220)
T cd03245 89 ----LFYG-------------T------LRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLS--G 143 (220)
T ss_pred ----cccc-------------h------HHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCC--H
Confidence 1100 0 00000000 00000000000000 00 000000 00001122234566 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEee
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEF 428 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~ 428 (602)
|||||++||||++.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+++++++|++++.
T Consensus 144 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999999999987656899999999998745999999999999764
No 253
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-33 Score=280.89 Aligned_cols=206 Identities=22% Similarity=0.323 Sum_probs=151.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC--C---CCceEEECCeecCCC--ChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE--P---ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~--~---~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++ | ++|+|.++|.++... ....+++.++|++|++.
T Consensus 19 ~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~- 96 (252)
T PRK14239 19 KALNSVSLDFYPN-EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN- 96 (252)
T ss_pred eeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc-
Confidence 4799999999998 9999999999999999999999953 6 599999999988643 34467788999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++ .. ++.+++... .............+..+.++.++.. ........
T Consensus 97 ----------~~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 147 (252)
T PRK14239 97 ----------PF-------------PM------SIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSAL 147 (252)
T ss_pred ----------cC-------------cC------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcc
Confidence 11 00 111110000 0000000000001111111222211 11233445
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++
T Consensus 148 ~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14239 148 GLS--GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDL 225 (252)
T ss_pred cCC--HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 667 69999999999999999999999999999999999999999987667899999999999877 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.|++++++..
T Consensus 226 ~~~g~~~~~~~~ 237 (252)
T PRK14239 226 IEYNDTKQMFMN 237 (252)
T ss_pred EEeCCHHHHHhC
Confidence 999999888664
No 254
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-33 Score=279.90 Aligned_cols=212 Identities=22% Similarity=0.320 Sum_probs=152.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC-----CceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA-----DGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~-----~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|. +|+|.++|.++.. .....+++.++|++|++.
T Consensus 17 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 17 KQAVKNVNLDVQRG-TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred EEeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 45799999999998 999999999999999999999999874 8999999998864 334567888999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhc-ccCCcccccCCcCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESV-SRSPIYSHFGETVT 349 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ls 349 (602)
++. ..+.. +.+............+.......+.++.+... ............+|
T Consensus 96 -----------~~~------------~~t~~--enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 150 (252)
T PRK14272 96 -----------PFP------------TMSVF--DNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLS 150 (252)
T ss_pred -----------cCc------------CCCHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCC
Confidence 110 00110 00000000000000000001111111111000 00011233345566
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+|||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 151 --~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 151 --GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred --HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 69999999999999999999999999999999999999999987667999999999999987 999999999999999
Q ss_pred cChhHHhhc
Q psy3001 429 DSPSVLMKN 437 (602)
Q Consensus 429 g~~~~l~~~ 437 (602)
|++++++..
T Consensus 229 ~~~~~~~~~ 237 (252)
T PRK14272 229 GPTDQLFTN 237 (252)
T ss_pred CCHHHHHhC
Confidence 999888654
No 255
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=9.6e-34 Score=278.92 Aligned_cols=197 Identities=24% Similarity=0.307 Sum_probs=144.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||.+.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++|++|+.
T Consensus 34 ~~il~~vs~~i~~G-e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~-------- 103 (236)
T cd03267 34 VEALKGISFTIEKG-EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQK-------- 103 (236)
T ss_pred eeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCc--------
Confidence 45899999999998 99999999999999999999999999999999999886543 345677899997431
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccc--cc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT--PF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+.++. . .++.+++.. .. ......... +....++.++..+........+| +||
T Consensus 104 --~~~~~------------~------~tv~e~l~~~~~~~~~~~~~~~~---~~~~~l~~~gl~~~~~~~~~~LS--~G~ 158 (236)
T cd03267 104 --TQLWW------------D------LPVIDSFYLLAAIYDLPPARFKK---RLDELSELLDLEELLDTPVRQLS--LGQ 158 (236)
T ss_pred --cccCC------------C------CcHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcCChhHhcCChhhCC--HHH
Confidence 11110 0 001110000 00 000001111 11122223333333344445677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||++|||||+.+|++|||||||++||+.+..++.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|
T Consensus 159 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 159 RMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999998743 6899999999999887 9999999999997653
No 256
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-33 Score=278.94 Aligned_cols=208 Identities=19% Similarity=0.324 Sum_probs=151.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++... ....+++.++|++|++.
T Consensus 16 ~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 16 KKAVKNVTMKIFKN-QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred ceeEeeeeEeecCC-CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 34799999999998 99999999999999999999999984 899999999988653 23456789999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++ ..+.. +.+... ........... ...+..+.++.++.. ........
T Consensus 95 -----------~~-------------~~tv~--e~l~~~-~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~ 145 (250)
T PRK14262 95 -----------PF-------------PMSIY--DNVAFG-PRIHGVKSKHK--LDRIVEESLKKAALWDEVKSELNKPGT 145 (250)
T ss_pred -----------cC-------------cccHH--HHHHHH-HHHcCCCcHHH--HHHHHHHHHHHcCCCchhHHHHhCChh
Confidence 11 00000 000000 00000000000 000111111122221 11334455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|++|+|||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++
T Consensus 146 ~LS--~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i 223 (250)
T PRK14262 146 RLS--GGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223 (250)
T ss_pred hcC--HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 666 69999999999999999999999999999999999999999987667899999999998877 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
+..|+++++.+.
T Consensus 224 ~~~g~~~~~~~~ 235 (250)
T PRK14262 224 IEYGPTREIVER 235 (250)
T ss_pred EEecCHHHHHhC
Confidence 999998887654
No 257
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=2.8e-33 Score=259.18 Aligned_cols=146 Identities=34% Similarity=0.558 Sum_probs=129.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
..++|++|++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. ..++.++|++|
T Consensus 14 ~vl~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---------- 82 (163)
T cd03216 14 KALDGVSLSVRRG-EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ---------- 82 (163)
T ss_pred EEEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe----------
Confidence 5899999999998 99999999999999999999999999999999999988766543 23445554441
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+| +|||||
T Consensus 83 ----------------------------------------------------------------------LS--~G~~qr 90 (163)
T cd03216 83 ----------------------------------------------------------------------LS--VGERQM 90 (163)
T ss_pred ----------------------------------------------------------------------cC--HHHHHH
Confidence 44 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
++||||++.+|++++|||||++||+.+.+.+.+.++++. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 91 l~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 91 VEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999998874 47899999999999877 99999999999864
No 258
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-33 Score=283.29 Aligned_cols=203 Identities=23% Similarity=0.319 Sum_probs=149.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCCC--ChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+.+ |++|+|.++|.++... ....+++.++|++|++.
T Consensus 53 ~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~- 130 (286)
T PRK14275 53 EAVKKVNADILSK-YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN- 130 (286)
T ss_pred EEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC-
Confidence 4677777777777 9999999999999999999999864 4999999999988643 23457889999999742
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc----cchhHHHHHHHHHHHHHHhhccc----CCcccc
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF----CSNLQRFYVATSRQLKRLESVSR----SPIYSH 343 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~ 343 (602)
++ .. ++.+++.... ............+.++ .++. ......
T Consensus 131 ----------l~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~l~~~~~~ 178 (286)
T PRK14275 131 ----------PF-------------PK------SIFDNIAYGPRLHGINDKKQLEEIVEKSLR---KAALWDEVSDRLDK 178 (286)
T ss_pred ----------CC-------------cc------CHHHHHHhHHHhcCCCcHHHHHHHHHHHHH---HhCCccchhhHhhC
Confidence 11 00 1111100000 0000000111111122 2111 112234
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|++
T Consensus 179 ~~~~LS--gGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~ 256 (286)
T PRK14275 179 NALGLS--GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYE 256 (286)
T ss_pred ChhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 455666 69999999999999999999999999999999999999999987667899999999999987 999999999
Q ss_pred ceEEeecChhHHhhc
Q psy3001 423 GLVVEFDSPSVLMKN 437 (602)
Q Consensus 423 G~i~~~g~~~~l~~~ 437 (602)
|++++.|++.++...
T Consensus 257 G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 257 GVLVEHAPTAQLFTN 271 (286)
T ss_pred CEEEEeCCHHHHHhC
Confidence 999999998887654
No 259
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=2e-33 Score=279.96 Aligned_cols=205 Identities=20% Similarity=0.307 Sum_probs=151.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC----CCceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP----ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~----~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++... ...++.++|++|++...|.
T Consensus 17 ~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~~i~~v~q~~~~~~~ 93 (254)
T PRK10418 17 PLVHGVSLTLQRG-RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGRKIATIMQNPRSAFN 93 (254)
T ss_pred ceecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccceEEEEecCCccccC
Confidence 4799999999998 99999999999999999999999999 999999999988632 2234679999998431110
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC---cccccCCcCCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP---IYSHFGETVTGN 351 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~lsgs 351 (602)
+. .+.. +.+...... .. ... ...+..+.++.++..+ ........+|
T Consensus 94 -----~~----------------~~~~--~~~~~~~~~-~~--~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~~LS-- 142 (254)
T PRK10418 94 -----PL----------------HTMH--THARETCLA-LG--KPA---DDATLTAALEAVGLENAARVLKLYPFEMS-- 142 (254)
T ss_pred -----cc----------------ccHH--HHHHHHHHH-cC--CCh---HHHHHHHHHHHcCCCChhhhhhcCCcccC--
Confidence 00 0000 000000000 00 000 0111222233333332 2344556677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|||++||+++.+.. ||++++|++|++++.
T Consensus 143 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~ 222 (254)
T PRK10418 143 GGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ 222 (254)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 6999999999999999999999999999999999999999988643 6899999999999977 999999999999999
Q ss_pred cChhHHhhc
Q psy3001 429 DSPSVLMKN 437 (602)
Q Consensus 429 g~~~~l~~~ 437 (602)
++++++...
T Consensus 223 ~~~~~~~~~ 231 (254)
T PRK10418 223 GDVETLFNA 231 (254)
T ss_pred cCHHHHhhC
Confidence 998888654
No 260
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-33 Score=273.21 Aligned_cols=192 Identities=21% Similarity=0.329 Sum_probs=142.9
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC----ChHHHhhccceecccchhhhhhccC
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL----GLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~----~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
|+||++.+ ++++|+|+||||||||+++|+|+++|++|+|.++|.++... +...+++.++|++|++.
T Consensus 16 ~vsl~i~~--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~-------- 85 (214)
T cd03297 16 KIDFDLNE--EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA-------- 85 (214)
T ss_pred CceEEEcc--eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCc--------
Confidence 99999987 99999999999999999999999999999999999987643 23356788999999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
++. . .++.+++......... .....+..+.++.++...........+| +|||||+
T Consensus 86 ---~~~------------~------~t~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrv 140 (214)
T cd03297 86 ---LFP------------H------LNVRENLAFGLKRKRN--REDRISVDELLDLLGLDHLLNRYPAQLS--GGEKQRV 140 (214)
T ss_pred ---cCC------------C------CCHHHHHHHHHhhCCH--HHHHHHHHHHHHHcCCHhHhhcCcccCC--HHHHHHH
Confidence 110 0 0111110000000000 0011112223334444333445556677 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
+||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999988643 7899999999999977 9999999999998654
No 261
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=3.1e-33 Score=273.41 Aligned_cols=199 Identities=26% Similarity=0.332 Sum_probs=149.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...++..+++.++|++|++.
T Consensus 20 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~------- 91 (225)
T PRK10247 20 AKILNNISFSLRAG-EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPT------- 91 (225)
T ss_pred ceeeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccc-------
Confidence 45899999999998 9999999999999999999999999999999999999988888778889999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQR 355 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~ 355 (602)
++ .. ++.+++... ........ ..+..+.++.++.. .........+| +||+
T Consensus 92 ----l~-------------~~------tv~enl~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LS--~G~~ 143 (225)
T PRK10247 92 ----LF-------------GD------TVYDNLIFPWQIRNQQPD---PAIFLDDLERFALPDTILTKNIAELS--GGEK 143 (225)
T ss_pred ----cc-------------cc------cHHHHHHhHHhhcCCChH---HHHHHHHHHHcCCChHHhcCCcccCC--HHHH
Confidence 11 10 111110000 00000000 01112233333332 23345556677 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEe-CceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLD-KGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~-~G~i~~~g~~~ 432 (602)
||++|||||+.+|+++||||||++||+.+...+.+.++++. .+.|+|++||+++.+..||++++|+ ++..++.|+|+
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 144 QRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999999999999998864 3789999999999987799999995 55556666653
No 262
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-33 Score=278.23 Aligned_cols=203 Identities=21% Similarity=0.323 Sum_probs=152.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC-----CceEEECCeecCCC--ChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA-----DGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~-----~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|+ +|+|.++|.++... ....+++.++|++|++.
T Consensus 18 ~il~~~s~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~- 95 (251)
T PRK14249 18 QVLKNINMDFPER-QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN- 95 (251)
T ss_pred eEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc-
Confidence 4799999999998 999999999999999999999999997 69999999988643 34567889999999742
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc-c---cchhHHHHHHHHHHHHHHhhccc----CCcccc
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F---CSNLQRFYVATSRQLKRLESVSR----SPIYSH 343 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~ 343 (602)
++. .+ +.+++... . ..............++ ..+. ......
T Consensus 96 ----------~~~-------------~t------v~enl~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~l~~~~~~ 143 (251)
T PRK14249 96 ----------PFP-------------KS------IFDNVAFGPRMLGTTAQSRLDEVVEKSLR---QAALWDEVKDNLHK 143 (251)
T ss_pred ----------cCc-------------Cc------HHHHHhhHHHhcCCChhhHHHHHHHHHHH---HhCCchhhhhHhhC
Confidence 110 01 11100000 0 0000000011111111 1111 112344
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| +|||||++|||||+.+|++|||||||++||+.+..++.+.|+++.+++|||++||+++.+.. ||++++|++
T Consensus 144 ~~~~LS--~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14249 144 SGLALS--GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLT 221 (251)
T ss_pred CcccCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeC
Confidence 555677 69999999999999999999999999999999999999999887667999999999999988 899999999
Q ss_pred ceEEeecChhHHhhc
Q psy3001 423 GLVVEFDSPSVLMKN 437 (602)
Q Consensus 423 G~i~~~g~~~~l~~~ 437 (602)
|++++.++++++...
T Consensus 222 G~i~~~~~~~~~~~~ 236 (251)
T PRK14249 222 GDLVEYGRTGEIFSR 236 (251)
T ss_pred CeEEEeCCHHHHHhC
Confidence 999999998887654
No 263
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=277.55 Aligned_cols=206 Identities=26% Similarity=0.337 Sum_probs=153.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC------eecCCCChHHHhhccceecccchh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG------VDIRTLGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g------~~~~~~~~~~~~~~i~~v~Q~~~~ 271 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++| .++...+...+++.++|++|++.
T Consensus 23 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~- 100 (257)
T PRK14246 23 KAILKDITIKIPNN-SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN- 100 (257)
T ss_pred ceeEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc-
Confidence 45899999999998 99999999999999999999999999987666655 56666666778899999999743
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc----ccchhHHHHHHHHHHHHHHhhcccC----Ccccc
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP----FCSNLQRFYVATSRQLKRLESVSRS----PIYSH 343 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 343 (602)
++. ..+ +.+++... ........... ..+.++.++.. .....
T Consensus 101 ----------~~~------------~~t------v~~nl~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 149 (257)
T PRK14246 101 ----------PFP------------HLS------IYDNIAYPLKSHGIKEKREIKKI---VEECLRKVGLWKEVYDRLNS 149 (257)
T ss_pred ----------cCC------------CCc------HHHHHHHHHHhcCCCCHHHHHHH---HHHHHHHcCCCccchhhhcC
Confidence 110 001 11110000 00000011111 11222222222 12233
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| +|||||++||||++.+|++++|||||++||+.++.++.+.++++.+++|+|++||+++.+.. ||++++|++
T Consensus 150 ~~~~LS--~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~ 227 (257)
T PRK14246 150 PASQLS--GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYN 227 (257)
T ss_pred CcccCC--HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEEC
Confidence 445566 69999999999999999999999999999999999999999987667999999999999976 999999999
Q ss_pred ceEEeecChhHHhhcc
Q psy3001 423 GLVVEFDSPSVLMKNK 438 (602)
Q Consensus 423 G~i~~~g~~~~l~~~~ 438 (602)
|++++.|+++++...+
T Consensus 228 g~i~~~g~~~~~~~~~ 243 (257)
T PRK14246 228 GELVEWGSSNEIFTSP 243 (257)
T ss_pred CEEEEECCHHHHHhCC
Confidence 9999999998887653
No 264
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.5e-33 Score=275.60 Aligned_cols=205 Identities=20% Similarity=0.305 Sum_probs=153.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++... ....+++.++|++|++.
T Consensus 21 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 21 FMAVRDSHVPIRKN-EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 46899999999998 99999999999999999999999986 799999999988643 34467788999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCC----cccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSP----IYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~ 345 (602)
++ .. ++.+++.... ....... ...+..+.++..+... ......
T Consensus 100 -----------~~-------------~~------tv~enl~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~i~~~~~~~~ 147 (261)
T PRK14263 100 -----------PF-------------SM------SIFDNVAFGLRLNRYKGD--LGDRVKHALQGAALWDEVKDKLKVSG 147 (261)
T ss_pred -----------cc-------------cc------cHHHHHHHHHhhcCchHH--HHHHHHHHHHHcCCchhhhhhhhCCc
Confidence 11 00 1111100000 0000000 0011122222222211 122334
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe---
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD--- 421 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~--- 421 (602)
..+| +||+||++|||||+++|++|||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||++++|+
T Consensus 148 ~~LS--~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLS--GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCC--HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEeccc
Confidence 4566 69999999999999999999999999999999999999999988667899999999999887 99999996
Q ss_pred -----CceEEeecChhHHhhc
Q psy3001 422 -----KGLVVEFDSPSVLMKN 437 (602)
Q Consensus 422 -----~G~i~~~g~~~~l~~~ 437 (602)
+|++++.|++++++..
T Consensus 226 ~~~~~~G~i~~~g~~~~~~~~ 246 (261)
T PRK14263 226 SQGTRTGYLVEMGPTAQIFQN 246 (261)
T ss_pred ccccCCceEEEeCCHHHHHhC
Confidence 8999999999988754
No 265
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-33 Score=313.16 Aligned_cols=214 Identities=29% Similarity=0.357 Sum_probs=159.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.|+|++|++...+
T Consensus 338 ~~l~~vs~~i~~G-e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l-- 414 (623)
T PRK10261 338 HAVEKVSFDLWPG-ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASL-- 414 (623)
T ss_pred EEEeeeEeEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhc--
Confidence 4678888888887 99999999999999999999999999999999999998876543 35678999999842110
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVG 353 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~G 353 (602)
+ ...++.+++.... ............+..+.++.++.. .........|| ||
T Consensus 415 -------~------------------~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LS--gG 467 (623)
T PRK10261 415 -------D------------------PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFS--GG 467 (623)
T ss_pred -------C------------------CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCC--HH
Confidence 0 0001111100000 000000000111222334444543 23455667788 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||+|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|||+|||+++.+.. ||||++|++|++++.|+
T Consensus 468 qrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~ 547 (623)
T PRK10261 468 QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGP 547 (623)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999988643 6899999999999988 99999999999999999
Q ss_pred hhHHhhcchhHH
Q psy3001 431 PSVLMKNKASIF 442 (602)
Q Consensus 431 ~~~l~~~~~~~~ 442 (602)
+++++..+...|
T Consensus 548 ~~~i~~~p~~~~ 559 (623)
T PRK10261 548 RRAVFENPQHPY 559 (623)
T ss_pred HHHHhcCCCCHH
Confidence 999876544444
No 266
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.1e-33 Score=280.40 Aligned_cols=204 Identities=24% Similarity=0.333 Sum_probs=152.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCCC-hHHHhhccceecccchh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTLG-LHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~~-~~~~~~~i~~v~Q~~~~ 271 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++...+ ...+++.++|++|++.
T Consensus 34 ~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~- 111 (276)
T PRK14271 34 KTVLDQVSMGFPAR-AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN- 111 (276)
T ss_pred EEEeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCc-
Confidence 45788888888888 99999999999999999999999986 7999999999887653 3467889999999742
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc----ccchhHHHHHHHHHHHHHHhhcccCC----cccc
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP----FCSNLQRFYVATSRQLKRLESVSRSP----IYSH 343 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 343 (602)
++. . ++.+++... ...............++ .++... ....
T Consensus 112 ----------l~~-------------~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~l~~ 159 (276)
T PRK14271 112 ----------PFP-------------M------SIMDNVLAGVRAHKLVPRKEFRGVAQARLT---EVGLWDAVKDRLSD 159 (276)
T ss_pred ----------cCC-------------c------cHHHHHHHHHHhccCCCHHHHHHHHHHHHH---HcCCCchhhhHhhC
Confidence 110 0 010000000 00000011111111122 222211 1233
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| +|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|||++||+++.+.. ||++++|++
T Consensus 160 ~~~~LS--gGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~ 237 (276)
T PRK14271 160 SPFRLS--GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFD 237 (276)
T ss_pred CcccCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 455667 69999999999999999999999999999999999999999887666899999999999887 999999999
Q ss_pred ceEEeecChhHHhhc
Q psy3001 423 GLVVEFDSPSVLMKN 437 (602)
Q Consensus 423 G~i~~~g~~~~l~~~ 437 (602)
|++++.++++++...
T Consensus 238 G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 238 GRLVEEGPTEQLFSS 252 (276)
T ss_pred CEEEEeCCHHHHHhC
Confidence 999999999888664
No 267
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-33 Score=277.46 Aligned_cols=207 Identities=21% Similarity=0.310 Sum_probs=152.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecC-CCChHHHhhccceecccchh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIR-TLGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~-~~~~~~~~~~i~~v~Q~~~~ 271 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..+...+++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~- 93 (249)
T PRK14253 16 NQALKSINLPIPAR-QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN- 93 (249)
T ss_pred eeeeecceEEecCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC-
Confidence 35799999999998 99999999999999999999999986 5999999999885 3456677889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++. .+ +.+++... .............+..+.++..+.. +.......
T Consensus 94 ----------~~~-------------~t------v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 144 (249)
T PRK14253 94 ----------PFP-------------MS------IYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAF 144 (249)
T ss_pred ----------cCc-------------cc------HHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcc
Confidence 110 00 00000000 0000000000001111111122111 12233445
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++
T Consensus 145 ~LS--~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i 222 (249)
T PRK14253 145 GLS--GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGEL 222 (249)
T ss_pred cCC--HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 666 69999999999999999999999999999999999999999988667899999999999988 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.|+++++...
T Consensus 223 ~~~g~~~~~~~~ 234 (249)
T PRK14253 223 VEHDDTQVIFSN 234 (249)
T ss_pred EEeCCHHHHHcC
Confidence 999988877543
No 268
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=2.7e-33 Score=280.43 Aligned_cols=209 Identities=24% Similarity=0.346 Sum_probs=152.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCeecCCC-----ChHHHhhccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTL-----GLHTLRSRLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~~~~~-----~~~~~~~~i~~v~Q~~ 269 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|+ +|+|.++|.++... ....+++.++|++|++
T Consensus 17 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 17 HQALHAVDLNIHHG-EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred eEEEecceEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 45799999999998 999999999999999999999999986 49999999988653 2345678899999974
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc----cchhHHHHHHHHHHHHHHhhcccCCcccccC
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF----CSNLQRFYVATSRQLKRLESVSRSPIYSHFG 345 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 345 (602)
.. +. ..+...+-........+. ...... ....+..+.++.++.........
T Consensus 96 ~~-----------~~------------~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 96 NL-----------VN------------RLSVLENVLIGALGSTPFWRTCFSWFTR--EQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cc-----------cc------------CCcHHHHHHhhhcccccchhhhcccccH--HHHHHHHHHHHHcCCHHHHhCCc
Confidence 21 10 000000000000000000 000000 01112222333333333344455
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
..+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++
T Consensus 151 ~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~ 228 (262)
T PRK09984 151 STLS--GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQ 228 (262)
T ss_pred cccC--HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6677 6999999999999999999999999999999999999999998753 7899999999999877 999999999
Q ss_pred ceEEeecChhHH
Q psy3001 423 GLVVEFDSPSVL 434 (602)
Q Consensus 423 G~i~~~g~~~~l 434 (602)
|++++.|+++++
T Consensus 229 g~i~~~g~~~~~ 240 (262)
T PRK09984 229 GHVFYDGSSQQF 240 (262)
T ss_pred CEEEEeCCHHHh
Confidence 999999998775
No 269
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=9.3e-32 Score=264.70 Aligned_cols=384 Identities=19% Similarity=0.209 Sum_probs=243.1
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFY 79 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 79 (602)
...++....++|.++.++++..|+.-+++..++.++.++++|+..|+-. ...++.+.+.++..++... +++.+.+.
T Consensus 73 t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~-~s~lp~~~qa~il~l~s~aYLayLSp~mf~ 151 (546)
T COG4615 73 TTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFA-FSRLPELVQAIILTLGSAAYLAYLSPKMFL 151 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeeh-HhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3467888999999999999999999999999999999999999999844 3445666665554444332 33333333
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHhhcccc---hhhhhcchh-----------------------HHH-------HHH
Q psy3001 80 GFVISLGTLFAAK----RLHEKLLKSMLRWSP---LFFDTTPVG-----------------------RVL-------SRF 122 (602)
Q Consensus 80 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~g-----------------------~~~-------~r~ 122 (602)
...+.+++..+.. .+-.+.+....+... ..+.....| +.. +-|
T Consensus 152 l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n~f 231 (546)
T COG4615 152 LTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTF 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhhHH
Confidence 3332222222111 111111111111000 011111111 000 111
Q ss_pred HHHHhhhhhHHHH-HHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 123 SSDVNTLDNKLTL-SVQQ------------------TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 123 ~~~~~~~~~~~~~-~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
..+.....+.+-. .+|. +......+-.|+..+....+.+..+.+|+++|.++-..|....
T Consensus 232 ~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~- 310 (546)
T COG4615 232 HLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKAD- 310 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc-
Confidence 1111111111100 0111 1111233445677788888889999999999999866443322
Q ss_pred ccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 184 VNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
... ....|.-..++++||.|.|.+. +|++-|+|.|||||||+++++.|+|.|++|+|.+||.++
T Consensus 311 ~~~---~q~~p~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV 387 (546)
T COG4615 311 FPR---PQAFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (546)
T ss_pred CCC---CCcCCcccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC
Confidence 111 1122344678999999999753 388999999999999999999999999999999999999
Q ss_pred CCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHH
Q psy3001 251 RTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330 (602)
Q Consensus 251 ~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (602)
..-+++++|+-++-|+-| .++| ...+. .+ .....+ ....-++
T Consensus 388 ~~e~ledYR~LfSavFsD-----------yhLF-------------~~ll~-----~e-----~~as~q----~i~~~Lq 429 (546)
T COG4615 388 SAEQLEDYRKLFSAVFSD-----------YHLF-------------DQLLG-----PE-----GKASPQ----LIEKWLQ 429 (546)
T ss_pred CCCCHHHHHHHHHHHhhh-----------Hhhh-------------HhhhC-----Cc-----cCCChH----HHHHHHH
Confidence 999999999998887764 2222 10000 00 001111 1111122
Q ss_pred HHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHH-h-ccccEEEEeeecc
Q psy3001 331 RLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS-E-FAHCTVLTIAHRL 408 (602)
Q Consensus 331 ~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~-~-~~~~tvi~itH~l 408 (602)
+++.-.+..+.+..-..+..|.|||.|+|+--|++.+.+|++|||=.+--||.-++++.+.+-- + ..|+||+.||||=
T Consensus 430 rLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd 509 (546)
T COG4615 430 RLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509 (546)
T ss_pred HHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence 2222222222222222233346999999999999999999999999999999999999877644 2 3589999999999
Q ss_pred cccccCCeEEEEeCceEEeec
Q psy3001 409 NTIIDSDRVLVLDKGLVVEFD 429 (602)
Q Consensus 409 ~~i~~~d~i~~l~~G~i~~~g 429 (602)
.....|||++.+++|++++..
T Consensus 510 ~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 510 HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hhhhhHHHHHHHhcCceeecc
Confidence 999999999999999998754
No 270
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-33 Score=277.87 Aligned_cols=208 Identities=21% Similarity=0.307 Sum_probs=152.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++... +....++.++|++|++.
T Consensus 19 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 19 KHALYDITISIPKN-RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred eeeeeeeEEEECCC-cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 35799999999998 99999999999999999999999763 489999999998765 44567888999999742
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++. .+...|-..... ..... ..........+.++ ..... ........
T Consensus 98 -----------~~~-------------~tv~eni~~~~~-~~~~~-~~~~~~~~~~~~l~---~~~l~~~l~~~~~~~~~ 148 (253)
T PRK14261 98 -----------PFP-------------KSIYENVAYGPR-IHGEK-NKKTLDTIVEKSLK---GAALWDEVKDRLHDSAL 148 (253)
T ss_pred -----------cCc-------------ccHHHHHHhhHH-hcCCC-CHHHHHHHHHHHHH---HhcCchhhHHHhhcChh
Confidence 110 010000000000 00000 00000011111111 11111 11234455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++
T Consensus 149 ~LS--~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i 226 (253)
T PRK14261 149 SLS--GGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKL 226 (253)
T ss_pred hCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEE
Confidence 667 69999999999999999999999999999999999999999987667899999999999987 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.|+++++...
T Consensus 227 ~~~g~~~~~~~~ 238 (253)
T PRK14261 227 IEFDKTTQIFEN 238 (253)
T ss_pred EEcCCHHHHHhC
Confidence 999998887654
No 271
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-33 Score=262.53 Aligned_cols=158 Identities=28% Similarity=0.462 Sum_probs=134.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|++|++.
T Consensus 14 ~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~-------- 83 (173)
T cd03230 14 TALDDISLTVEKG-EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPS-------- 83 (173)
T ss_pred eeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEEecCCc--------
Confidence 4799999999998 999999999999999999999999999999999999887655 567789999999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
++. . .++.+ .. . +| +||+||+
T Consensus 84 ---~~~------------~------~tv~~------------~~-------------------~-----LS--~G~~qrv 104 (173)
T cd03230 84 ---LYE------------N------LTVRE------------NL-------------------K-----LS--GGMKQRL 104 (173)
T ss_pred ---ccc------------C------CcHHH------------Hh-------------------h-----cC--HHHHHHH
Confidence 110 0 00000 00 0 45 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
+|||||+.+|++++|||||++||+.+...+.+.+++.. ++.|+|++||+++.+.. ||++++|++|++
T Consensus 105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999874 46899999999999986 999999999874
No 272
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.3e-33 Score=278.92 Aligned_cols=208 Identities=23% Similarity=0.303 Sum_probs=151.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .....+++.++|++|++.
T Consensus 38 ~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 38 KQALFDISMRIPKN-RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred eeEeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 35788888888887 99999999999999999999999884 89999999998864 344567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++ ..+.. +.+....................+..+ ..+.. ........
T Consensus 117 -----------l~-------------~~tv~--enl~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~~~ 167 (272)
T PRK14236 117 -----------PF-------------PKSIY--ENVVYGLRLQGINNRRVLDEAVERSLR---GAALWDEVKDRLHENAF 167 (272)
T ss_pred -----------cC-------------cccHH--HHHHHHHHhcCCCcHHHHHHHHHHHHH---HcCCChhHHHHhhCCcc
Confidence 11 00110 000000000000000000011111111 22211 12233455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+++|+++||||||++||+.+...+.+.++++.++.|+|++||+++.+.. ||++++|++|++
T Consensus 168 ~LS--~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 168 GLS--GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245 (272)
T ss_pred cCC--HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 666 69999999999999999999999999999999999999999988667899999999999877 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.|+++++...
T Consensus 246 ~~~g~~~~~~~~ 257 (272)
T PRK14236 246 VEYGDTDTLFTS 257 (272)
T ss_pred EecCCHHHHhcC
Confidence 999998887654
No 273
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=1.5e-33 Score=266.22 Aligned_cols=165 Identities=32% Similarity=0.502 Sum_probs=135.2
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++|++|++..
T Consensus 15 ~l~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~------- 86 (182)
T cd03215 15 AVRDVSFEVRAG-EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKR------- 86 (182)
T ss_pred eecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCccc-------
Confidence 799999999998 9999999999999999999999999999999999999987764 4567889999996310
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+.++ ...++.++ +. .. . .+| +|||||+
T Consensus 87 -~~~~------------------~~~t~~e~--------l~---------~~---~------------~LS--~G~~qrl 113 (182)
T cd03215 87 -EGLV------------------LDLSVAEN--------IA---------LS---S------------LLS--GGNQQKV 113 (182)
T ss_pred -Cccc------------------CCCcHHHH--------HH---------HH---h------------hcC--HHHHHHH
Confidence 0000 00001000 00 00 0 055 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
+||||++.+|++++|||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999998874 47899999999999988 999999999974
No 274
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3e-33 Score=263.21 Aligned_cols=161 Identities=34% Similarity=0.514 Sum_probs=135.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC--hHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG--LHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~--~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|++|++.
T Consensus 13 ~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~----- 86 (178)
T cd03229 13 KTVLNDVSLNIEAG-EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFA----- 86 (178)
T ss_pred eEEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCc-----
Confidence 34799999999998 999999999999999999999999999999999999988765 5677889999999732
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
++ . +.++.++ +. . .+| +|||
T Consensus 87 ------~~-------------~-----~~t~~~~-------------------------l~----~-----~lS--~G~~ 106 (178)
T cd03229 87 ------LF-------------P-----HLTVLEN-------------------------IA----L-----GLS--GGQQ 106 (178)
T ss_pred ------cC-------------C-----CCCHHHh-------------------------ee----e-----cCC--HHHH
Confidence 11 0 0001000 00 0 055 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
||++|||||+++|+++||||||++||+.+...+.+.+++..+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 107 qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 107 QRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999999999999988654 5899999999999987 99999999884
No 275
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.6e-33 Score=275.94 Aligned_cols=195 Identities=29% Similarity=0.423 Sum_probs=146.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++..
T Consensus 28 ~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l------- 99 (226)
T cd03248 28 LVLQDVSFTLHPG-EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVL------- 99 (226)
T ss_pred ccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHH-------
Confidence 4789999999888 99999999999999999999999999999999999988777777778899999997421
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHH--HHHHHHHhhc--ccCCcccccCCcCCCChhh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVAT--SRQLKRLESV--SRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~~~~~~~~~~~~lsgs~Gq 354 (602)
+ ..+...|-.. . ............. ....+.++.+ +..+........+| +||
T Consensus 100 ----~-------------~~tv~~nl~~-~----~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LS--gG~ 155 (226)
T cd03248 100 ----F-------------ARSLQDNIAY-G----LQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLS--GGQ 155 (226)
T ss_pred ----H-------------hhhHHHHhcc-c----cCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCC--HHH
Confidence 1 1111110000 0 0000000100000 0011222222 33334455566777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceE
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLV 425 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i 425 (602)
|||++|||||+.+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999987667899999999999977999999999874
No 276
>KOG0927|consensus
Probab=100.00 E-value=2.6e-33 Score=286.40 Aligned_cols=227 Identities=19% Similarity=0.209 Sum_probs=152.5
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| ||||.|++|||||+.+|++|+|||||+|||.++..|+.+.|.+.... ++|+++|.-+++.. |+.|+.|++++.
T Consensus 221 ~~S--gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 221 DLS--GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKL 297 (614)
T ss_pred ccC--chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccce
Confidence 455 69999999999999999999999999999999999999999876433 89999999999999 999999999995
Q ss_pred E-eecChhHHhhcchhHHHHHHHhhh-----h---h-----------HHHHHHH-hhhh---------------------
Q psy3001 426 V-EFDSPSVLMKNKASIFYSMAKDAG-----L---A-----------WLAVRLE-TVGN--------------------- 463 (602)
Q Consensus 426 ~-~~g~~~~l~~~~~~~~~~~~~~~~-----~---~-----------~~~~~~~-~~~~--------------------- 463 (602)
+ ..|+.+.+.....+......+... . + ....... ....
T Consensus 298 ~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~ 377 (614)
T KOG0927|consen 298 IYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSF 377 (614)
T ss_pred eeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEE
Confidence 5 456666665432221111111000 0 0 0000000 0000
Q ss_pred -----------hHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC
Q psy3001 464 -----------LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532 (602)
Q Consensus 464 -----------~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~ 532 (602)
.+.+.++.+.|.++. ......+|.+..+++||+|||||+|||||+|+++|.+.|..|.|.-.-.
T Consensus 378 ~f~~vg~~p~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H---- 452 (614)
T KOG0927|consen 378 RFPEVGKIPPPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH---- 452 (614)
T ss_pred EcccccCCCCCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc----
Confidence 000000000000000 1112356888899999999999999999999999999999999976532
Q ss_pred CChhhhhccceEecCCc---cccccchhcccCC-CC-CCcHHHHHHHHHHcCCCccccccc
Q psy3001 533 LGLHTLRSRLTIIPQDP---VLFSGTLRLNLDP-VG-ESSDEAIWKALELAHLNTFVSNLP 588 (602)
Q Consensus 533 ~~~~~lr~~i~~V~Qdp---~lf~~Tv~~nl~~-~~-~~~~~~i~~al~~~~l~~~~~~~~ 588 (602)
.++++.-|.- ..+.-|.-++..+ .+ ..+.+++...|.++||.......|
T Consensus 453 -------~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p 506 (614)
T KOG0927|consen 453 -------NKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP 506 (614)
T ss_pred -------ccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc
Confidence 2466666654 2345566666542 23 467788999999999986544333
No 277
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-33 Score=280.38 Aligned_cols=204 Identities=21% Similarity=0.345 Sum_probs=148.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+...+++.++|++|++.
T Consensus 53 ~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~- 130 (285)
T PRK14254 53 QALDDVSMDIPEN-QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN- 130 (285)
T ss_pred eeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc-
Confidence 4567777777776 9999999999999999999999997 689999999998864 344567889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++ ..+ +.+++.... ...... ....+..+.++.++.. ........
T Consensus 131 ----------l~-------------~~t------v~enl~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~i~~~~~~~~~ 179 (285)
T PRK14254 131 ----------PF-------------PKS------IYDNVAYGLKIQGYDG--DIDERVEESLRRAALWDEVKDQLDSSGL 179 (285)
T ss_pred ----------cC-------------cCC------HHHHHHHHHHHcCCcH--HHHHHHHHHHHHcCCCchhHHHHhCCcc
Confidence 11 001 111100000 000000 0001111222222221 12334455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEE-EEeCce
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVL-VLDKGL 424 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~-~l~~G~ 424 (602)
.+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.++.|+|++||+++.+.. |||++ +|++|+
T Consensus 180 ~LS--gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~ 257 (285)
T PRK14254 180 DLS--GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGE 257 (285)
T ss_pred cCC--HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCE
Confidence 677 69999999999999999999999999999999999999999988666899999999999987 99975 579999
Q ss_pred EEeecChhHHhhc
Q psy3001 425 VVEFDSPSVLMKN 437 (602)
Q Consensus 425 i~~~g~~~~l~~~ 437 (602)
+++.+++++++..
T Consensus 258 i~~~g~~~~~~~~ 270 (285)
T PRK14254 258 LVEFDDTDKIFEN 270 (285)
T ss_pred EEEeCCHHHHHhC
Confidence 9999988887653
No 278
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.5e-32 Score=324.87 Aligned_cols=221 Identities=19% Similarity=0.201 Sum_probs=146.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+|+.+.+| ++++|+||||||||||+|+|+|.++|+ +|+|.++|.++.+... ++.++|++|+......
T Consensus 178 ~~IL~~vs~~i~~G-e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 178 LTILKDASGIIKPS-RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGV 253 (1470)
T ss_pred ceeccCCeEEEeCC-eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCc
Confidence 34799999999998 999999999999999999999999998 9999999998865532 6789999997321110
Q ss_pred hccCCceeEeeecccceeeeccccce-eec--ccc--cccc--cccccchhHHHHHH-H-------HHHHHHHhhcccCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSL-IFT--EDV--KPLI--ITPFCSNLQRFYVA-T-------SRQLKRLESVSRSP 339 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~--~~~~--~~~~~~~~~~~~~~-~-------~~~~~~l~~~~~~~ 339 (602)
+...+...|. ....+.- ... .+. .+.. ..+ ....+.+... . ......++.+++..
T Consensus 254 lTV~EtL~f~---------a~~~~~~~~~~~~~~~~~~ek~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~ 323 (1470)
T PLN03140 254 MTVKETLDFS---------ARCQGVGTRYDLLSELARREKDAGIFP-EAEVDLFMKATAMEGVKSSLITDYTLKILGLDI 323 (1470)
T ss_pred CcHHHHHHHH---------HHhcCCCCcccchhhcCHHHHhccCCC-chhhHHHHHHhhhhcchhhHHHHHHHHHcCCcc
Confidence 0000000000 0000000 000 000 0000 000 0000000000 0 00112233344432
Q ss_pred c-----ccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccc-cc
Q psy3001 340 I-----YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLN-TI 411 (602)
Q Consensus 340 ~-----~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~-~i 411 (602)
. .......+| |||||||+||++|+.+|++++|||||++||+.+...+.+.|++.. .++|+|+++|++. .+
T Consensus 324 ~~~t~vg~~~~rglS--GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i 401 (1470)
T PLN03140 324 CKDTIVGDEMIRGIS--GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPET 401 (1470)
T ss_pred ccCceeCCccccCCC--cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH
Confidence 1 122334566 699999999999999999999999999999999999999999874 3789999999974 56
Q ss_pred cc-CCeEEEEeCceEEeecChhHH
Q psy3001 412 ID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 412 ~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
.+ +|+|++|++|+++..|+.+++
T Consensus 402 ~~lfD~vilL~~G~ivy~G~~~~~ 425 (1470)
T PLN03140 402 FDLFDDIILLSEGQIVYQGPRDHI 425 (1470)
T ss_pred HHHhheEEEeeCceEEEeCCHHHH
Confidence 66 999999999999988765543
No 279
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.8e-33 Score=277.47 Aligned_cols=205 Identities=18% Similarity=0.308 Sum_probs=152.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .....+++.++|++|++.
T Consensus 23 ~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 23 FLAVKNVWLDIPKN-QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred EEEeecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 35789999999988 9999999999999999999999986 489999999998853 345667889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchh-HHHHHHHHHHHHHHhhccc----CCccccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNL-QRFYVATSRQLKRLESVSR----SPIYSHF 344 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~----~~~~~~~ 344 (602)
++.. ++.+++.... .... ........+.++ ..+. .......
T Consensus 102 -----------~~~~-------------------tv~enl~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~l~~~~~~~ 148 (264)
T PRK14243 102 -----------PFPK-------------------SIYDNIAYGARINGYKGDMDELVERSLR---QAALWDEVKDKLKQS 148 (264)
T ss_pred -----------cccc-------------------cHHHHHHhhhhhcCcchHHHHHHHHHHH---HhCchhhHHHHhcCC
Confidence 1100 0101000000 0000 000001111111 1111 1112344
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe--
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD-- 421 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~-- 421 (602)
...+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|+
T Consensus 149 ~~~LS--gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~ 226 (264)
T PRK14243 149 GLSLS--GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVE 226 (264)
T ss_pred cccCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecc
Confidence 55677 69999999999999999999999999999999999999999988667899999999999988 99999998
Q ss_pred -------CceEEeecChhHHhhcc
Q psy3001 422 -------KGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 422 -------~G~i~~~g~~~~l~~~~ 438 (602)
+|++++.|+++++...+
T Consensus 227 ~~~~~~~~g~i~~~~~~~~~~~~~ 250 (264)
T PRK14243 227 LTEGGGRYGYLVEFDRTEKIFNSP 250 (264)
T ss_pred cccccccCceEEEeCCHHHHHhCC
Confidence 89999999999987653
No 280
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-33 Score=261.23 Aligned_cols=156 Identities=46% Similarity=0.709 Sum_probs=136.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+++++|++
T Consensus 16 ~~l~~i~~~i~~G-~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~--------- 85 (171)
T cd03228 16 PVLKDVSLTIKPG-EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDP--------- 85 (171)
T ss_pred ccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCc---------
Confidence 4799999999998 999999999999999999999999999999999999988877778888999999962
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
.++ . .++ .+ .+ +| +|||||+
T Consensus 86 --~~~-------------~------~t~----------------------~e---~l------------LS--~G~~~rl 105 (171)
T cd03228 86 --FLF-------------S------GTI----------------------RE---NI------------LS--GGQRQRI 105 (171)
T ss_pred --hhc-------------c------chH----------------------HH---Hh------------hC--HHHHHHH
Confidence 111 0 000 00 00 45 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCce
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGL 424 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~ 424 (602)
+||||++.+|++|+|||||++||+.+...+.+.+++..+++|+|++||+++.+..||++++|++|+
T Consensus 106 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 106 AIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999999999999999988766799999999999997799999999884
No 281
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.4e-33 Score=277.67 Aligned_cols=205 Identities=21% Similarity=0.303 Sum_probs=151.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .....+++.++|++|++.
T Consensus 21 ~il~~isl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~- 98 (259)
T PRK14260 21 KAIEGISMDIYRN-KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN- 98 (259)
T ss_pred EeecceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc-
Confidence 4789999999998 99999999999999999999999985 48999999998854 344567889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhccc----CCcccccC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSR----SPIYSHFG 345 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~ 345 (602)
++ .. ++.+++.... ....... .......+.++..+. ........
T Consensus 99 ----------l~-------------~~------tv~enl~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~ 148 (259)
T PRK14260 99 ----------PF-------------PM------SIYENVAYGVRISAKLPQA-DLDEIVESALKGAALWQEVKDKLNKSA 148 (259)
T ss_pred ----------cC-------------Cc------cHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHcCCcchhhhHhcCCc
Confidence 11 00 1111100000 0000000 000111111222221 11233445
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe---
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD--- 421 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~--- 421 (602)
..+| +|||||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|+
T Consensus 149 ~~LS--~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~ 226 (259)
T PRK14260 149 LGLS--GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDE 226 (259)
T ss_pred ccCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccC
Confidence 5677 69999999999999999999999999999999999999999987667899999999999988 99999998
Q ss_pred --CceEEeecChhHHhhc
Q psy3001 422 --KGLVVEFDSPSVLMKN 437 (602)
Q Consensus 422 --~G~i~~~g~~~~l~~~ 437 (602)
+|++++.|+++++.+.
T Consensus 227 ~~~G~i~~~~~~~~~~~~ 244 (259)
T PRK14260 227 SRIGQMVEFGVTTQIFSN 244 (259)
T ss_pred CCCceEEEeCCHHHHhcC
Confidence 5999999999988654
No 282
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.7e-33 Score=242.36 Aligned_cols=204 Identities=28% Similarity=0.372 Sum_probs=154.6
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee--cCCC----ChHHHhhccceecccchhhh
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD--IRTL----GLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~--~~~~----~~~~~~~~i~~v~Q~~~~~~ 273 (602)
.+-|+++.-++| +.+.+.||||+|||||++.+.=+.-|.+|+..|.|.. .+.. ....+|+.+|+|+|.
T Consensus 17 ~lfdi~l~~~~g-etlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqq----- 90 (242)
T COG4161 17 ALFDITLDCPEG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ----- 90 (242)
T ss_pred heeeeeecCCCC-CEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhh-----
Confidence 455566665566 8999999999999999999999999999999997753 3322 245789999999994
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccc-ccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV-KPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
+.+...-++ +.++..+.. ..+. ...+..+..+.+..+.+.+..+.++..+|
T Consensus 91 ------------------------y~lwphltv~enlieap~kv~gl~-~~qa~~~a~ellkrlrl~~~adr~plhls-- 143 (242)
T COG4161 91 ------------------------YNLWPHLTVQENLIEAPCRVLGLS-KDQALARAEKLLKRLRLKPYADRYPLHLS-- 143 (242)
T ss_pred ------------------------hccCchhHHHHHHHhhhHHHhCCC-HHHHHHHHHHHHHHhccccccccCceecc--
Confidence 222222111 111101100 0000 11223344455556666777888888888
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||+||+||||||..+|++|++||||++|||+-...+.+.++++.+ |.|-++|||..+.... |.+++.|++|+|++.|
T Consensus 144 ggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g 223 (242)
T COG4161 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred cchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeec
Confidence 5999999999999999999999999999999999999999999865 7999999999999998 9999999999999999
Q ss_pred ChhHHhh
Q psy3001 430 SPSVLMK 436 (602)
Q Consensus 430 ~~~~l~~ 436 (602)
+.+-+-.
T Consensus 224 ~a~~ft~ 230 (242)
T COG4161 224 DASCFTE 230 (242)
T ss_pred chhhccC
Confidence 8776543
No 283
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=4.8e-33 Score=271.28 Aligned_cols=197 Identities=21% Similarity=0.294 Sum_probs=146.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...++. ..++.++|++|++..
T Consensus 18 ~~il~~vs~~i~~G-~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~--- 93 (220)
T TIGR02982 18 KQVLFDINLEINPG-EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNL--- 93 (220)
T ss_pred eeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhh---
Confidence 45899999999998 99999999999999999999999999999999999998776643 467899999998431
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+. ..+...+-..... .. ........ ..+..+.++.++..+........+| +||
T Consensus 94 --------~~------------~~t~~~n~~~~~~-~~-~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~lS--~G~ 146 (220)
T TIGR02982 94 --------LG------------FLTARQNVQMALE-LQ-PNLSYQEA---RERARAMLEAVGLGDHLDYYPHNLS--GGQ 146 (220)
T ss_pred --------cC------------CCCHHHHHHHHHH-hc-cCCCHHHH---HHHHHHHHHHcCChhhhhcChhhCC--HHH
Confidence 10 0011100000000 00 00000111 1122233334444444555566777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceE
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLV 425 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i 425 (602)
|||++|||||+.+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++....||++++|++|++
T Consensus 147 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 147 KQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999988653 6999999999986544999999999986
No 284
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-33 Score=278.37 Aligned_cols=208 Identities=22% Similarity=0.314 Sum_probs=147.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...++.++|++|++...+..
T Consensus 20 ~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~~-- 93 (272)
T PRK15056 20 HTALRDASFTVPGG-SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVAYVPQSEEVDWSF-- 93 (272)
T ss_pred cEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEEEeccccccccCC--
Confidence 45899999999998 9999999999999999999999999999999999988742 11234699999984321100
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+..+ ...+... ..... ........... .+..+.++.++...........+| +|||||
T Consensus 94 --~~~~-------------~~~i~~~-~~~~~--~~~~~~~~~~~---~~~~~~l~~~gl~~~~~~~~~~LS--gG~~qr 150 (272)
T PRK15056 94 --PVLV-------------EDVVMMG-RYGHM--GWLRRAKKRDR---QIVTAALARVDMVEFRHRQIGELS--GGQKKR 150 (272)
T ss_pred --Ccch-------------hhheecc-ccccc--ccccCCCHHHH---HHHHHHHHHcCChhHhcCCcccCC--HHHHHH
Confidence 0000 0000000 00000 00000000000 111122233333333444455677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|||++||+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999998874 47899999999999877 9999777 89999999888764
No 285
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=4.5e-33 Score=272.21 Aligned_cols=195 Identities=22% Similarity=0.273 Sum_probs=146.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.+++++|++..
T Consensus 13 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~~~q~~~~------ 81 (223)
T TIGR03740 13 QTAVNNISLTVPKN-SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGSLIESPPL------ 81 (223)
T ss_pred EEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEEEcCCCCc------
Confidence 45799999999998 999999999999999999999999999999999998775322 2579999997321
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. .. ++.+++... ...... ..+..+.++.++..+........+| +||||
T Consensus 82 -----~~------------~~------t~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~~ 131 (223)
T TIGR03740 82 -----YE------------NL------TARENLKVHTTLLGLP-----DSRIDEVLNIVDLTNTGKKKAKQFS--LGMKQ 131 (223)
T ss_pred -----cc------------cC------CHHHHHHHHHHHcCCC-----HHHHHHHHHHcCCcHHHhhhHhhCC--HHHHH
Confidence 10 00 111110000 000000 0111222223333333444455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++||||++.+|++|+|||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|+++..+++.+
T Consensus 132 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 132 RLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999999999999998875 47899999999999977 99999999999999887653
No 286
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=276.97 Aligned_cols=205 Identities=18% Similarity=0.306 Sum_probs=151.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||.+.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .....+++.++|++|++.
T Consensus 33 ~~~l~~vs~~i~~G-e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 33 FLALVDVHLKIPAK-KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred eEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 35788999999888 99999999999999999999999863 69999999998854 234467889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhH-HHHHHHHHHHHHHhhccc----CCccccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQ-RFYVATSRQLKRLESVSR----SPIYSHF 344 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~----~~~~~~~ 344 (602)
++ ..+ +.+++... ...... .......+.+ +..+. .......
T Consensus 112 -----------l~-------------~~t------v~~nl~~~~~~~~~~~~~~~~~~~~l---~~~~l~~~l~~~~~~~ 158 (274)
T PRK14265 112 -----------PF-------------PKS------IYENIAFAPRANGYKGNLDELVEDSL---RRAAIWEEVKDKLKEK 158 (274)
T ss_pred -----------cc-------------ccc------HHHHHHhHHHhcCchHHHHHHHHHHH---HHcccchhhHHHhcCC
Confidence 11 000 11100000 000000 0000011111 11111 1123344
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe--
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD-- 421 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~-- 421 (602)
...+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|+
T Consensus 159 ~~~LS--gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~ 236 (274)
T PRK14265 159 GTALS--GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTE 236 (274)
T ss_pred cccCC--HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecc
Confidence 55677 69999999999999999999999999999999999999999988667899999999999987 99999997
Q ss_pred -------CceEEeecChhHHhhcc
Q psy3001 422 -------KGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 422 -------~G~i~~~g~~~~l~~~~ 438 (602)
+|++++.|+++++...+
T Consensus 237 ~~~~~~~~G~~~~~g~~~~~~~~~ 260 (274)
T PRK14265 237 IDEYGKRRGKLVEFSPTEQMFGSP 260 (274)
T ss_pred cccccccCceEEEeCCHHHHHhCC
Confidence 89999999999887653
No 287
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.8e-33 Score=244.09 Aligned_cols=195 Identities=28% Similarity=0.418 Sum_probs=152.4
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+||+..+| |.++|+||||||||||+|+++-+.+|++|++++.|.+++.+++..+|+.++|+.|.
T Consensus 15 ~a~il~~isl~v~~G-e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~-------- 85 (223)
T COG4619 15 DAKILNNISLSVRAG-EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT-------- 85 (223)
T ss_pred CCeeecceeeeecCC-ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcC--------
Confidence 456899999999999 99999999999999999999999999999999999999999999999999999997
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhccc-CCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSR-SPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~lsgs~Gq~ 355 (602)
|-+| . +++++++.++.....++. ......+.+....+ ...+...-..+| ||||
T Consensus 86 ---paLf-------------g------~tVeDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lS--GGE~ 139 (223)
T COG4619 86 ---PALF-------------G------DTVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELS--GGEK 139 (223)
T ss_pred ---cccc-------------c------cchhhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhcc--chHH
Confidence 4444 2 222333222211111110 00111222222222 223444556677 5999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
||++|+|-|---|+||+||||||+||+.+.+.+.+++.++. ++..++.|||+.+...+ +|+++-+..|++-
T Consensus 140 QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 140 QRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred HHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 99999999999999999999999999999999999998875 46899999999999554 9999999998873
No 288
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-32 Score=273.92 Aligned_cols=208 Identities=19% Similarity=0.258 Sum_probs=152.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+.+ |++|+|.++|.++... +...+++.++|+||++.
T Consensus 16 ~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 16 AHILKNVNLDIPKN-SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred eEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 45899999999998 9999999999999999999999874 4899999999988653 35567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
+|.. +...+ +................ .+..+.++..+.. ........
T Consensus 95 -----------~~~~-------------t~~~n--l~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~l~~~~~~~~~ 145 (250)
T PRK14266 95 -----------PFPK-------------SIFDN--VAYGLRIHGEDDEDFIE---ERVEESLKAAALWDEVKDKLDKSAL 145 (250)
T ss_pred -----------cCcc-------------hHHHH--HHhHHhhcCCCCHHHHH---HHHHHHHHHcCCchhHHHHHhCCcc
Confidence 2210 10000 00000000000000000 1111111121111 12234455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++
T Consensus 146 ~LS--~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i 223 (250)
T PRK14266 146 GLS--GGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEI 223 (250)
T ss_pred cCC--HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeE
Confidence 666 69999999999999999999999999999999999999999988667899999999999988 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.|+++++...
T Consensus 224 ~~~g~~~~~~~~ 235 (250)
T PRK14266 224 IESGLTDQIFIN 235 (250)
T ss_pred EEeCCHHHHHhC
Confidence 999999887654
No 289
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=1.3e-32 Score=263.83 Aligned_cols=171 Identities=25% Similarity=0.332 Sum_probs=141.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc--cCCCCceEEECCeecCCCChHHH-hhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~--~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+.... +..++|++|++.
T Consensus 13 ~~~l~~is~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~---- 87 (200)
T cd03217 13 KEILKGVNLTIKKG-EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPP---- 87 (200)
T ss_pred EEeeeccceEECCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChh----
Confidence 35899999999998 99999999999999999999999 58999999999999988776554 456999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++ .. ....... + .....+| +||
T Consensus 88 -------~~-------------~~-----------------~~~~~~l-------~------------~~~~~LS--~G~ 109 (200)
T cd03217 88 -------EI-------------PG-----------------VKNADFL-------R------------YVNEGFS--GGE 109 (200)
T ss_pred -------hc-------------cC-----------------ccHHHHH-------h------------hccccCC--HHH
Confidence 11 00 0000000 0 1123466 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeecccccc--cCCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTII--DSDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~--~~d~i~~l~~G~i~~~g~~ 431 (602)
|||++|||||+.+|++++|||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.++.
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 9999999999999999999999999999999999999988754 689999999999987 5999999999999998843
No 290
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-33 Score=275.32 Aligned_cols=208 Identities=22% Similarity=0.322 Sum_probs=150.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC--C---CCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE--P---ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~--~---~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .....+++.++|++|++.
T Consensus 18 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 18 FEALKGIDLDFNQN-EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred eeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 35799999999998 9999999999999999999999975 5 59999999998864 234566789999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhccc----CCcccccCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSR----SPIYSHFGE 346 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~ 346 (602)
++. .+.. +.+......................++ ..+. .........
T Consensus 97 -----------~~~-------------~tv~--~nl~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~i~~~~~~~~~ 147 (252)
T PRK14255 97 -----------PFP-------------FSIY--ENVIYGLRLAGVKDKAVLDEAVETSLK---QAAIWDEVKDHLHESAL 147 (252)
T ss_pred -----------cCC-------------CcHH--HHHHHHHHHcCCCCHHHHHHHHHHHHH---HcCCccchhhHHhcCcc
Confidence 110 0000 000000000000000000011111111 2111 112233445
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 ~LS--~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14255 148 SLS--GGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225 (252)
T ss_pred cCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 677 69999999999999999999999999999999999999999987666899999999999987 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.+++.+.+..
T Consensus 226 ~~~~~~~~~~~~ 237 (252)
T PRK14255 226 IEFADTKQMFLN 237 (252)
T ss_pred EEeCCHHHHhcC
Confidence 999998887654
No 291
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=6.7e-33 Score=267.73 Aligned_cols=190 Identities=21% Similarity=0.302 Sum_probs=138.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh----HHHhhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~----~~~~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..+.. ...++.++|++|++.
T Consensus 11 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--- 86 (206)
T TIGR03608 11 KIILDDLNLTIEKG-KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA--- 86 (206)
T ss_pred EEEEeceEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh---
Confidence 35899999999998 9999999999999999999999999999999999998764432 245678999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. ..+ +.+++... ....... .....+..+.++.++...........+| +
T Consensus 87 --------~~~------------~~t------~~e~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~lS--~ 137 (206)
T TIGR03608 87 --------LIE------------NET------VEENLDLGLKYKKLSK-KEKREKKKEALEKVGLNLKLKQKIYELS--G 137 (206)
T ss_pred --------hcc------------CCc------HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCchhhhcCChhhCC--H
Confidence 110 001 11110000 0000000 0011122223333444333445556677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVL 420 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l 420 (602)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. ++.|+|++||+++.+..||++++|
T Consensus 138 G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 138 GEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999999999999998864 478999999999976569999875
No 292
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-32 Score=275.27 Aligned_cols=206 Identities=21% Similarity=0.318 Sum_probs=149.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC----CChHHHhhccceecccc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT----LGLHTLRSRLTIIPQVL 269 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~----~~~~~~~~~i~~v~Q~~ 269 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. .....+++.++|++|++
T Consensus 30 ~vl~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 108 (265)
T PRK14252 30 QALKNINMMVHEK-QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKP 108 (265)
T ss_pred eeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCC
Confidence 5788888888887 99999999999999999999999975 79999999987642 33456788999999973
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhccc----CCccccc
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSR----SPIYSHF 344 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ 344 (602)
. ++. .+ +.+++.... ............+....++.... .+.....
T Consensus 109 ~-----------~~~-------------~t------v~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (265)
T PRK14252 109 N-----------PFP-------------KS------IFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDL 158 (265)
T ss_pred c-----------CCc-------------ch------HHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCC
Confidence 2 110 01 111000000 00000000000011111111111 1122334
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
...+| +||+||++|||||+.+|+++||||||++||+.+...+.+.++++.+++|+|+|||+++++.. ||++++|++|
T Consensus 159 ~~~LS--~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G 236 (265)
T PRK14252 159 AFNLS--GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMG 236 (265)
T ss_pred cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 45666 69999999999999999999999999999999999999999987667899999999999987 9999999999
Q ss_pred eEEeecChhHHhhc
Q psy3001 424 LVVEFDSPSVLMKN 437 (602)
Q Consensus 424 ~i~~~g~~~~l~~~ 437 (602)
++++.|+++++...
T Consensus 237 ~i~~~g~~~~~~~~ 250 (265)
T PRK14252 237 ELIEFGATDTIFIK 250 (265)
T ss_pred EEEEeCCHHHHHhC
Confidence 99999998887654
No 293
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-32 Score=274.62 Aligned_cols=207 Identities=20% Similarity=0.277 Sum_probs=152.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC-----CceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA-----DGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~-----~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+...+++.+++++|++.
T Consensus 21 ~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~- 98 (261)
T PRK14258 21 KILEGVSMEIYQS-KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN- 98 (261)
T ss_pred eEeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc-
Confidence 5799999999988 999999999999999999999999985 8999999998743 344567888999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++ .. ++.+++.... ............+..+.++.++.. +.......
T Consensus 99 ----------l~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 149 (261)
T PRK14258 99 ----------LF-------------PM------SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSAL 149 (261)
T ss_pred ----------cC-------------cc------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcc
Confidence 11 00 1111100000 000000000001111222222221 12344455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC-
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK- 422 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~- 422 (602)
.+| +|||||++|||||+++|++|||||||++||+.+...+.+.++++. .++|+|++||+++.+.. ||+|++|++
T Consensus 150 ~LS--gGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~ 227 (261)
T PRK14258 150 DLS--GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGN 227 (261)
T ss_pred cCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccC
Confidence 677 699999999999999999999999999999999999999998853 47999999999999987 999999999
Q ss_pred ----ceEEeecChhHHhhcc
Q psy3001 423 ----GLVVEFDSPSVLMKNK 438 (602)
Q Consensus 423 ----G~i~~~g~~~~l~~~~ 438 (602)
|++++.++++++...+
T Consensus 228 ~~~~G~i~~~~~~~~~~~~~ 247 (261)
T PRK14258 228 ENRIGQLVEFGLTKKIFNSP 247 (261)
T ss_pred CCcCceEEEeCCHHHHHhCC
Confidence 9999999999987653
No 294
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2e-32 Score=242.62 Aligned_cols=212 Identities=25% Similarity=0.338 Sum_probs=167.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++.|||+..++ +.+|++|.||||||||.|+|+|+++|++|+|.+||.++.--+.....++|-+++|+|...|..
T Consensus 28 AV~~vSFtL~~~-QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP---- 102 (267)
T COG4167 28 AVKPVSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP---- 102 (267)
T ss_pred cccceEEEecCC-cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccCh----
Confidence 678899999998 999999999999999999999999999999999999998777888889999999998765531
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCc-ccccCCcCCCChhhHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPI-YSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl 358 (602)
-+-.+ ..+..++..+.+. .-.++..+..+++..+++.|- .......++ .||||||
T Consensus 103 -Rl~iG--------qiLd~PL~l~T~~-------------~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la--~~QKQRV 158 (267)
T COG4167 103 -RLRIG--------QILDFPLRLNTDL-------------EPEQRRKQIFETLRMVGLLPDHANYYPHMLA--PGQKQRV 158 (267)
T ss_pred -hhhhh--------hHhcchhhhcccC-------------ChHHHHHHHHHHHHHhccCccccccchhhcC--chhHHHH
Confidence 11100 0001111111111 112344556677777776553 334556677 5999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
|+||||+-+|+|+|-||+.++||...+..+.....++. .|.+-|+|+.++..+.. +|+|+||+.|+++|+|++.+++
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 99999999999999999999999998888887766653 47899999999999998 9999999999999999999998
Q ss_pred hcchh
Q psy3001 436 KNKAS 440 (602)
Q Consensus 436 ~~~~~ 440 (602)
..+..
T Consensus 239 a~P~~ 243 (267)
T COG4167 239 ASPLH 243 (267)
T ss_pred cCCcc
Confidence 76543
No 295
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=1.1e-32 Score=269.97 Aligned_cols=200 Identities=21% Similarity=0.276 Sum_probs=144.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC---CCCceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE---PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~---~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++. ...+++.+++++|++.
T Consensus 20 ~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~~~~q~~~---- 91 (226)
T cd03234 20 ARILNDVSLHVESG-QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQKCVAYVRQDDI---- 91 (226)
T ss_pred cccccCceEEEcCC-eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhcccEEEeCCCCc----
Confidence 45899999999998 9999999999999999999999999 99999999999875 3467788999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHH-HHhhcccCCcccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK-RLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++.. .+...+-..... ........... ...+... .++..+..+........+| +|
T Consensus 92 -------~~~~------------~tv~enl~~~~~--~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G 147 (226)
T cd03234 92 -------LLPG------------LTVRETLTYTAI--LRLPRKSSDAI-RKKRVEDVLLRDLALTRIGGNLVKGIS--GG 147 (226)
T ss_pred -------cCcC------------CcHHHHHHHHHH--hhcccccchHH-HHHHHHHHHHHhhcchhhhcccccCcC--HH
Confidence 1100 011000000000 00000000000 0001111 2223333333344445677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecc-ccccc-CCeEEEEeCceEEeec
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRL-NTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l-~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|+||++|||||+.+|++|||||||++||+.+...+.+.+++.. ++.|+|++||++ +.+.. ||++++|++|++++.|
T Consensus 148 ~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 148 ERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999998864 468999999998 47766 9999999999998754
No 296
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2e-32 Score=272.24 Aligned_cols=212 Identities=18% Similarity=0.240 Sum_probs=147.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc--CCCCceEEECCeecCCCChHHHh-hccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII--EPADGTIIIDGVDIRTLGLHTLR-SRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~--~~~~G~I~i~g~~~~~~~~~~~~-~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|++ +|++|+|.++|.++...++...+ ..+++++|++.....
T Consensus 14 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 14 KAILRGLNLEVRPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred eeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 34799999999998 999999999999999999999995 69999999999998877766554 579999997431100
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccC-CcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFG-ETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~-~~lsgs~ 352 (602)
. .. ..+.. .. . ..+.. ........ .........+.++.++.. ....... ..+| +
T Consensus 93 ~----~~-----------~~~~~-~~-~-~~~~~---~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS--~ 148 (248)
T PRK09580 93 V----SN-----------QFFLQ-TA-L-NAVRS---YRGQEPLD-RFDFQDLMEEKIALLKMPEDLLTRSVNVGFS--G 148 (248)
T ss_pred h----hH-----------HHHHH-Hh-h-hhhhc---ccccccch-HHHHHHHHHHHHHHcCCChhhcccCCCCCCC--H
Confidence 0 00 00000 00 0 00000 00000000 000011111122222221 1112222 2466 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc--CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID--SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~--~d~i~~l~~G~i~~~g 429 (602)
|||||++||||++++|++|||||||++||+.+...+.+.++.+.+ ++|||++||+++.+.. +|++++|++|+++..|
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999987654 6899999999999876 7999999999999988
Q ss_pred ChhHH
Q psy3001 430 SPSVL 434 (602)
Q Consensus 430 ~~~~l 434 (602)
+++..
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 87643
No 297
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=1.4e-32 Score=261.79 Aligned_cols=179 Identities=23% Similarity=0.341 Sum_probs=130.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC--CChHHHhhccceecccchhhhhhc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....+++.++|++|++...
T Consensus 6 ~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~---- 80 (190)
T TIGR01166 6 EVLKGLNFAAERG-EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ---- 80 (190)
T ss_pred ceecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc----
Confidence 4799999999998 9999999999999999999999999999999999998852 22345678899999974210
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++ .. ++.+++... ......... .+..+.++.++..+........+| +|
T Consensus 81 -----~~-------------~~------tv~~nl~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS--~G 131 (190)
T TIGR01166 81 -----LF-------------AA------DVDQDVAFGPLNLGLSEAEVE---RRVREALTAVGASGLRERPTHCLS--GG 131 (190)
T ss_pred -----cc-------------cc------cHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCchhhhhCChhhCC--HH
Confidence 11 00 111110000 000000011 111222223333334445556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccc
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTI 411 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i 411 (602)
||||++|||||+.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++++
T Consensus 132 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 132 EKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 9999999999999999999999999999999999999998874 478999999998753
No 298
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=3.9e-32 Score=270.75 Aligned_cols=211 Identities=18% Similarity=0.209 Sum_probs=148.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc--cCCCCceEEECCeecCCCChHHHhh-ccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTLRS-RLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~--~~~~~G~I~i~g~~~~~~~~~~~~~-~i~~v~Q~~~~~~~ 274 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+....++ .+++++|++.
T Consensus 20 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~---- 94 (252)
T CHL00131 20 NEILKGLNLSINKG-EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPI---- 94 (252)
T ss_pred EEeeecceeEEcCC-cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccc----
Confidence 35899999999998 99999999999999999999998 6899999999999998877665544 4788998732
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCC-cCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGE-TVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~lsgs~ 352 (602)
++..... ...+.+.................... .+..+.++.++.. ........ .+| +
T Consensus 95 -------~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~~LS--g 154 (252)
T CHL00131 95 -------EIPGVSN--------ADFLRLAYNSKRKFQGLPELDPLEFL---EIINEKLKLVGMDPSFLSRNVNEGFS--G 154 (252)
T ss_pred -------ccccccH--------HHHHHHhhhhhhcccccccccHHHHH---HHHHHHHHHcCCchhhhccccccCCC--H
Confidence 1100000 00000000000000000000000011 1112223333332 12233332 477 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc--CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID--SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~--~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998875 47999999999999875 8999999999999998
Q ss_pred ChhH
Q psy3001 430 SPSV 433 (602)
Q Consensus 430 ~~~~ 433 (602)
+++.
T Consensus 235 ~~~~ 238 (252)
T CHL00131 235 DAEL 238 (252)
T ss_pred Chhh
Confidence 8773
No 299
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.1e-32 Score=258.00 Aligned_cols=167 Identities=25% Similarity=0.347 Sum_probs=134.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc--CCCCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII--EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~--~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|++ +|++|+|.++|.++. ..+++.++|++|++.
T Consensus 20 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~i~~~~q~~~----- 89 (192)
T cd03232 20 RQLLNNISGYVKPG-TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQDV----- 89 (192)
T ss_pred eEeEEccEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhhceEEecccCc-----
Confidence 45799999999998 999999999999999999999986 489999999999875 456778999999632
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
++ ...++.++ +. + .... . .+| +|||
T Consensus 90 ------~~------------------~~~tv~~~--------l~-~----~~~~------------~----~LS--gGe~ 114 (192)
T cd03232 90 ------HS------------------PNLTVREA--------LR-F----SALL------------R----GLS--VEQR 114 (192)
T ss_pred ------cc------------------cCCcHHHH--------HH-H----HHHH------------h----cCC--HHHh
Confidence 11 00011110 00 0 0000 0 455 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccc-ccc-CCeEEEEeC-ceEEeec
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNT-IID-SDRVLVLDK-GLVVEFD 429 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-i~~-~d~i~~l~~-G~i~~~g 429 (602)
||++||||++.+|++|+|||||++||+.+...+.+.+++.. .++|+|++||+++. +.. ||++++|++ |++++.|
T Consensus 115 qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 115 KRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999998865 37899999999984 555 999999999 9998754
No 300
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=4.1e-32 Score=258.96 Aligned_cols=167 Identities=27% Similarity=0.408 Sum_probs=135.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc--CCCCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII--EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~--~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|++ +|++|+|.++|+++.. ..+++.+++++|++.
T Consensus 22 ~~~l~~~~~~i~~G-e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~----- 92 (194)
T cd03213 22 KQLLKNVSGKAKPG-ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFRKIIGYVPQDDI----- 92 (194)
T ss_pred ccceecceEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---HhhhheEEEccCccc-----
Confidence 34799999999998 999999999999999999999999 9999999999998864 356788999999732
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
++ . ..++.++ +. + . . . .. .+| +|||
T Consensus 93 ------~~-------------~-----~~t~~~~--------i~-~----~---~---~------~~----~LS--~G~~ 117 (194)
T cd03213 93 ------LH-------------P-----TLTVRET--------LM-F----A---A---K------LR----GLS--GGER 117 (194)
T ss_pred ------CC-------------C-----CCcHHHH--------HH-H----H---H---H------hc----cCC--HHHH
Confidence 11 0 0011100 00 0 0 0 0 00 455 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccc-cccc-CCeEEEEeCceEEee
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLN-TIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~i~~-~d~i~~l~~G~i~~~ 428 (602)
||++|||||+.+|++++|||||++||+.+.+.+.+.++++. +++|+|++||+++ .+.. ||++++|++|+++..
T Consensus 118 qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 118 KRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 99999999999999999999999999999999999998875 4799999999997 5666 999999999999764
No 301
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=1.7e-32 Score=281.72 Aligned_cols=188 Identities=25% Similarity=0.385 Sum_probs=141.4
Q ss_pred EEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeecc
Q psy3001 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFI 296 (602)
Q Consensus 217 lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (602)
|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++|++|++. ++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~-----------l~~------------ 55 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYA-----------LFP------------ 55 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCcc-----------ccC------------
Confidence 589999999999999999999999999999999876654 3678999999732 110
Q ss_pred ccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEec
Q psy3001 297 QVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDE 375 (602)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDE 375 (602)
. .++.+++.... ...... .....+..+.++.++..+........+| ||||||++|||||+.+|++|||||
T Consensus 56 ~------~tv~enl~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gGq~qRvalaraL~~~p~lllLDE 126 (325)
T TIGR01187 56 H------MTVEENVAFGLKMRKVPR-AEIKPRVLEALRLVQLEEFADRKPHQLS--GGQQQRVALARALVFKPKILLLDE 126 (325)
T ss_pred C------CcHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHcCCcchhcCChhhCC--HHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0 01111110000 000000 0011122233334455555566667788 699999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhhcc
Q psy3001 376 ATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 376 pts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 438 (602)
||++||+.++..+.+.|++..+ ++|+|+|||+++++.. ||++++|++|+++..|++++++..+
T Consensus 127 P~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 127 PLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999988643 7899999999999887 9999999999999999999887653
No 302
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.7e-32 Score=300.02 Aligned_cols=209 Identities=28% Similarity=0.405 Sum_probs=155.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~~~i~~v~Q~~~~~~~ 274 (602)
...|+|+||++.+| ++++|+|+||||||||+|+|+|+++ ++|+|.++|.++...+... +++.++|++|++...+
T Consensus 299 ~~il~~isl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l- 375 (529)
T PRK15134 299 NVVVKNISFTLRPG-ETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL- 375 (529)
T ss_pred ceeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc-
Confidence 45789999999988 9999999999999999999999995 8999999999987665433 4678999999742100
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc--cc-hhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CS-NLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTG 350 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsg 350 (602)
+ .+.++.+++.... .. .... .....+..+.++.++.. .........||
T Consensus 376 --------~------------------~~~tv~e~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS- 427 (529)
T PRK15134 376 --------N------------------PRLNVLQIIEEGLRVHQPTLSA-AQREQQVIAVMEEVGLDPETRHRYPAEFS- 427 (529)
T ss_pred --------C------------------CcccHHHHHHHHHHhccccCCh-HHHHHHHHHHHHHcCCCHHHHhcCCccCC-
Confidence 0 0001111100000 00 0000 00111222333344443 23445566777
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+.. ||++++|++|++++
T Consensus 428 -gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 428 -GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred -HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 6999999999999999999999999999999999999999998743 6899999999999987 99999999999999
Q ss_pred ecChhHHhhcc
Q psy3001 428 FDSPSVLMKNK 438 (602)
Q Consensus 428 ~g~~~~l~~~~ 438 (602)
.|++++++..+
T Consensus 507 ~~~~~~~~~~~ 517 (529)
T PRK15134 507 QGDCERVFAAP 517 (529)
T ss_pred EcCHHHHhcCC
Confidence 99998887643
No 303
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.98 E-value=2.2e-32 Score=266.91 Aligned_cols=194 Identities=26% Similarity=0.357 Sum_probs=139.7
Q ss_pred EecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeec
Q psy3001 208 YREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIV 287 (602)
Q Consensus 208 ~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~ 287 (602)
+.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++. ..++.++|++|++...+. +
T Consensus 3 i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~--------~---- 64 (223)
T TIGR03771 3 ADKG-ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWD--------F---- 64 (223)
T ss_pred cCCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCC--------C----
Confidence 4455 999999999999999999999999999999999998753 346789999997432100 0
Q ss_pred ccceeeeccccceeeccccccccc---ccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHH
Q psy3001 288 PVSVLYFFIQVSLIFTEDVKPLII---TPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARAL 364 (602)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral 364 (602)
..+. .+.+..... .......... ..+..+.++.++..+........+| +|||||++|||||
T Consensus 65 ---------~~tv--~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrv~laral 128 (223)
T TIGR03771 65 ---------PISV--AHTVMSGRTGHIGWLRRPCVAD---FAAVRDALRRVGLTELADRPVGELS--GGQRQRVLVARAL 128 (223)
T ss_pred ---------CccH--HHHHHhccccccccccCCcHHH---HHHHHHHHHHhCCchhhcCChhhCC--HHHHHHHHHHHHH
Confidence 0000 000000000 0000000000 1112222333444444444555677 6999999999999
Q ss_pred hhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhh
Q psy3001 365 LRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 365 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
+++|+++||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||+++++ +|+++..++++++..
T Consensus 129 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 129 ATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 99999999999999999999999999998875 47899999999999887 9999999 899999998888754
No 304
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.98 E-value=6.1e-32 Score=267.83 Aligned_cols=190 Identities=25% Similarity=0.421 Sum_probs=142.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++++||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++| +..++|++|++...
T Consensus 17 ~~vl~~vs~~i~~G-e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~v~q~~~~~----- 79 (251)
T PRK09544 17 RRVLSDVSLELKPG-KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGYVPQKLYLD----- 79 (251)
T ss_pred ceEEEeEEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEEeccccccc-----
Confidence 35899999999998 99999999999999999999999999999999987 24699999974210
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+.+ . .++.+.+.. ..... ..+..+.++.++...........+| +|||||
T Consensus 80 --~~l--------------~------~~~~~~~~~--~~~~~-----~~~~~~~l~~~gl~~~~~~~~~~LS--gGq~qr 128 (251)
T PRK09544 80 --TTL--------------P------LTVNRFLRL--RPGTK-----KEDILPALKRVQAGHLIDAPMQKLS--GGETQR 128 (251)
T ss_pred --ccc--------------C------hhHHHHHhc--ccccc-----HHHHHHHHHHcCChHHHhCChhhCC--HHHHHH
Confidence 000 0 000000000 00000 0111222223333333444556677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||++++|++ ++++.|+++++
T Consensus 129 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 129 VLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 9999999999999999999999999999999999988643 7899999999999977 999999965 78899988887
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 208 ~~ 209 (251)
T PRK09544 208 SL 209 (251)
T ss_pred hC
Confidence 54
No 305
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.98 E-value=8.5e-32 Score=258.50 Aligned_cols=177 Identities=25% Similarity=0.353 Sum_probs=136.5
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC---CCCceEEECCeecCCCChHHHhhccceecccchhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE---PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~---~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~ 273 (602)
+...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.... ...++.++|++|++.
T Consensus 19 ~~~il~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~~~i~~~~q~~~--- 93 (202)
T cd03233 19 KIPILKDFSGVVKPG-EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYPGEIIYVSEEDV--- 93 (202)
T ss_pred CceeeeeEEEEECCC-cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhcceEEEEecccc---
Confidence 456899999999998 9999999999999999999999999 89999999999987654 356778999999621
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. ..++.++ +. +... .. .......+| +|
T Consensus 94 --------~~~------------------~~tv~~~--------l~-~~~~----~~----------~~~~~~~LS--~G 122 (202)
T cd03233 94 --------HFP------------------TLTVRET--------LD-FALR----CK----------GNEFVRGIS--GG 122 (202)
T ss_pred --------cCC------------------CCcHHHH--------Hh-hhhh----hc----------cccchhhCC--HH
Confidence 110 0011111 00 0000 00 122334566 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEee-eccccccc-CCeEEEEeCceEEeec
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIA-HRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~it-H~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
||||++|||||+++|++|||||||++||+.+++.+.+.+++..+ +.|+|+++ |+.+.+.. ||++++|++|+++..|
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998743 46666655 55677766 9999999999997643
No 306
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=1.4e-32 Score=247.07 Aligned_cols=206 Identities=23% Similarity=0.330 Sum_probs=165.2
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
....++++|..+++| .+++++||||||||||+.+++++.++++|+|.++|.++.+++..++.+.++++-|+.....
T Consensus 13 ~~~vl~~isl~i~~g-~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~--- 88 (252)
T COG4604 13 TKVVLDDVSLDIPKG-GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINS--- 88 (252)
T ss_pred CEEeeccceeeecCC-ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhh---
Confidence 467899999999998 9999999999999999999999999999999999999999999999999999999521110
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccc----h-hHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS----N-LQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
.-++++++.+.... . -.+.....++. ++-+.+.++-.++-.+||
T Consensus 89 --------------------------rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~a---ieyl~L~~l~dryLd~LS-- 137 (252)
T COG4604 89 --------------------------RLTVRDLVGFGRFPYSQGRLTKEDRRIINEA---IEYLHLEDLSDRYLDELS-- 137 (252)
T ss_pred --------------------------eeEHHHHhhcCCCcccCCCCchHHHHHHHHH---HHHhcccchHHHhHHhcc--
Confidence 00111111111100 0 01111222222 334445555666777788
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
||||||.-+|..++++.+.++||||.++||......+++.++++.+ ++|+++|-||..+... +|+|+-|++|+++..
T Consensus 138 GGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~ 217 (252)
T COG4604 138 GGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQ 217 (252)
T ss_pred cchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEec
Confidence 5999999999999999999999999999999999999999998754 7999999999999988 999999999999999
Q ss_pred cChhHHhhc
Q psy3001 429 DSPSVLMKN 437 (602)
Q Consensus 429 g~~~~l~~~ 437 (602)
|+++++++.
T Consensus 218 G~~~eii~~ 226 (252)
T COG4604 218 GSPDEIIQP 226 (252)
T ss_pred CCHHHhcCH
Confidence 999998764
No 307
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.98 E-value=1.2e-31 Score=273.49 Aligned_cols=218 Identities=22% Similarity=0.312 Sum_probs=146.7
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCCC--ChHHHhhccceecccchhh
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~~~ 272 (602)
.++++||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++... +...+++.++|++|++.
T Consensus 60 iL~~is~~i~~G-e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~-- 136 (305)
T PRK14264 60 ALKGVSMDIPEK-SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN-- 136 (305)
T ss_pred eeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc--
Confidence 455555665566 9999999999999999999999986 6899999999988643 35567889999999742
Q ss_pred hhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhccc----CCcccccCCcC
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSR----SPIYSHFGETV 348 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l 348 (602)
++...+.....+.. . ........... .............+..+.+..++. ..........+
T Consensus 137 ---------l~~~tv~enl~~~~-~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 201 (305)
T PRK14264 137 ---------PFPKSIRENISYGP-R----KHGDINTGLLA-RLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGL 201 (305)
T ss_pred ---------cccccHHHHHHhHH-h----hcccccccccc-cccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccC
Confidence 11000000000000 0 00000000000 000000000000111111112221 11234445567
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeE-EEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRV-LVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i-~~l~~G~i~ 426 (602)
| +|||||++|||||+++|++|||||||++||+.+...+.+.|+++.++.|+|++||+++.+.. ||++ ++|++|+++
T Consensus 202 S--gGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~ 279 (305)
T PRK14264 202 S--GGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELV 279 (305)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEE
Confidence 7 69999999999999999999999999999999999999999988667899999999999987 9997 578999999
Q ss_pred eecChhHHhhc
Q psy3001 427 EFDSPSVLMKN 437 (602)
Q Consensus 427 ~~g~~~~l~~~ 437 (602)
+.|+++++...
T Consensus 280 ~~g~~~~~~~~ 290 (305)
T PRK14264 280 EYDDTDKIFEN 290 (305)
T ss_pred EeCCHHHHHhC
Confidence 99998887653
No 308
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.98 E-value=7.3e-32 Score=263.26 Aligned_cols=185 Identities=25% Similarity=0.260 Sum_probs=134.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... .....+.+..
T Consensus 35 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~~~~~~--------- 99 (224)
T cd03220 35 FWALKDVSFEVPRG-ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGGFNPEL--------- 99 (224)
T ss_pred eEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccccCCCCC---------
Confidence 56899999999998 99999999999999999999999999999999999875311 1111111110
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-c-c-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F-C-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++.+++... . . ........ +..+.++.++..+........+| +||
T Consensus 100 ---------------------------tv~enl~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS--gG~ 147 (224)
T cd03220 100 ---------------------------TGRENIYLNGRLLGLSRKEIDE---KIDEIIEFSELGDFIDLPVKTYS--SGM 147 (224)
T ss_pred ---------------------------cHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcCChhhhhCChhhCC--HHH
Confidence 011100000 0 0 00001011 11122223333333444455677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||++||||++++|+++||||||++||+.++..+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 ~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 148 KARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999998864 46899999999999987 9999999999997654
No 309
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.98 E-value=6.9e-32 Score=295.20 Aligned_cols=207 Identities=24% Similarity=0.314 Sum_probs=151.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-CCCceEEECCeecCCCCh-HHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-PADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+|+||||||||+|+|+|+++ |++|+|.++|.++...+. ..+++.++|++|++...
T Consensus 275 ~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~--- 350 (506)
T PRK13549 275 IKRVDDVSFSLRRG-EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRD--- 350 (506)
T ss_pred cccccceeeEEcCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhC---
Confidence 34789999999998 9999999999999999999999999 599999999998865443 34567899999974210
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc---cch---hHHHHHHHHHHHHHHhhcccC-CcccccCCcC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF---CSN---LQRFYVATSRQLKRLESVSRS-PIYSHFGETV 348 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l 348 (602)
.++. +.++.+++.... ... ... .....+..+.++.++.. .........|
T Consensus 351 -----~~~~------------------~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~L 406 (506)
T PRK13549 351 -----GIVP------------------VMGVGKNITLAALDRFTGGSRIDD-AAELKTILESIQRLKVKTASPELAIARL 406 (506)
T ss_pred -----CCcC------------------CCCHHHHhhhhhhhhhccCcccCh-HHHHHHHHHHHHhcCccCCCcccccccC
Confidence 0000 001111000000 000 000 00111222333344443 2344555677
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
| ||||||++|||||+.+|++|||||||++||+.+...+.+.++.+. +++|||++||+++++.. ||++++|++|+++
T Consensus 407 S--gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 407 S--GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484 (506)
T ss_pred C--HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 7 699999999999999999999999999999999999999998864 47899999999999987 9999999999999
Q ss_pred eecChhHH
Q psy3001 427 EFDSPSVL 434 (602)
Q Consensus 427 ~~g~~~~l 434 (602)
..++.+++
T Consensus 485 ~~~~~~~~ 492 (506)
T PRK13549 485 GDLINHNL 492 (506)
T ss_pred EEeccccC
Confidence 88877654
No 310
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.98 E-value=1e-31 Score=257.97 Aligned_cols=184 Identities=20% Similarity=0.235 Sum_probs=137.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+++.++|++|++....
T Consensus 13 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~---- 86 (201)
T cd03231 13 RALFSGLSFTLAAG-EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLYLGHAPGIKT---- 86 (201)
T ss_pred ceeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEEeccccccCC----
Confidence 35799999999998 999999999999999999999999999999999999876543 467789999999732110
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+.++.+++....... ...+..+.++.++..+........+| +|||||
T Consensus 87 -------------------------~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qr 133 (201)
T cd03231 87 -------------------------TLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLS--AGQQRR 133 (201)
T ss_pred -------------------------CcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCC--HHHHHH
Confidence 011111110000000 01111122223333333344455667 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEE
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVL 420 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l 420 (602)
++|||||+++|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+...+.. +++++++
T Consensus 134 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 134 VALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999999999999999998764 47899999999888877 8999877
No 311
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.98 E-value=4.2e-32 Score=256.46 Aligned_cols=196 Identities=19% Similarity=0.321 Sum_probs=152.2
Q ss_pred eEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC----CChHHHhhccceecccchhhhhhccCC
Q psy3001 204 YKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT----LGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 204 vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~----~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
++|..+.. -++||-|+||||||||+|+|+|+..|++|.|.+||.-+.+ +....-+++||||+|+..
T Consensus 17 a~~~~p~~-GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR--------- 86 (352)
T COG4148 17 ANFTLPAR-GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR--------- 86 (352)
T ss_pred EeccCCCC-ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccc---------
Confidence 44444432 6899999999999999999999999999999999986644 334456789999999843
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLIC 359 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~ 359 (602)
+|. .++.. .++....... .....++. ...++..++...++.+||| |||||||
T Consensus 87 --LFp------------H~tVr------gNL~YG~~~~---~~~~fd~i---v~lLGI~hLL~R~P~~LSG--GEkQRVA 138 (352)
T COG4148 87 --LFP------------HYTVR------GNLRYGMWKS---MRAQFDQL---VALLGIEHLLDRYPGTLSG--GEKQRVA 138 (352)
T ss_pred --ccc------------ceEEe------cchhhhhccc---chHhHHHH---HHHhCcHHHHhhCCCccCc--chhhHHH
Confidence 221 11111 1110000000 11112222 2356677788899999995 9999999
Q ss_pred HHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhh
Q psy3001 360 LARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 360 lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
|+|||+.+|++|++|||.|+||.....++.-.+.++.+ +..|++|||.++++.. ||+|++|++|++.++|..++++.
T Consensus 139 IGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 139 IGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 99999999999999999999999999999999988765 4789999999999998 99999999999999999999876
Q ss_pred c
Q psy3001 437 N 437 (602)
Q Consensus 437 ~ 437 (602)
.
T Consensus 219 ~ 219 (352)
T COG4148 219 S 219 (352)
T ss_pred C
Confidence 5
No 312
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.98 E-value=7.6e-32 Score=294.49 Aligned_cols=205 Identities=21% Similarity=0.315 Sum_probs=152.4
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++...
T Consensus 267 ~l~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~------ 339 (501)
T PRK10762 267 GVNDVSFTLRKG-EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRD------ 339 (501)
T ss_pred CcccceEEEcCC-cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccC------
Confidence 378999999998 99999999999999999999999999999999999998766543 4567899999974200
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc---cch----hHHHHHHHHHHHHHHhhcccC-CcccccCCcCCC
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF---CSN----LQRFYVATSRQLKRLESVSRS-PIYSHFGETVTG 350 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsg 350 (602)
.++. +.++.+++.... ... ... .....+..+.++.++.. .........+|
T Consensus 340 --~~~~------------------~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS- 397 (501)
T PRK10762 340 --GLVL------------------GMSVKENMSLTALRYFSRAGGSLKH-ADEQQAVSDFIRLFNIKTPSMEQAIGLLS- 397 (501)
T ss_pred --CCcC------------------CCcHHHHhhhhhhhhhcccccccCH-HHHHHHHHHHHHhcCCCCCCccCchhhCC-
Confidence 0000 000111000000 000 000 00111122333344442 34455566777
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|||++||+++++.. ||++++|++|+++..
T Consensus 398 -gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 398 -GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred -HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 699999999999999999999999999999999999999998874 47899999999999988 999999999999988
Q ss_pred cChhHH
Q psy3001 429 DSPSVL 434 (602)
Q Consensus 429 g~~~~l 434 (602)
++.+++
T Consensus 477 ~~~~~~ 482 (501)
T PRK10762 477 FTREQA 482 (501)
T ss_pred eccccC
Confidence 876654
No 313
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.2e-31 Score=293.81 Aligned_cols=201 Identities=20% Similarity=0.286 Sum_probs=148.9
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccch--hhhhhc
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLA--TIFVIC 276 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~--~~~~~~ 276 (602)
.++|+||++.+| ++++|+|+||||||||+|+|+|+++|++|+|.++|.++...+. ..+++.++|++|++. ..+
T Consensus 278 ~l~~isl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--- 353 (510)
T PRK09700 278 KVRDISFSVCRG-EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFF--- 353 (510)
T ss_pred cccceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCc---
Confidence 689999999988 9999999999999999999999999999999999998865543 356678999999731 110
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc------c-c--hhHHHHHHHHHHHHHHhhcccC-CcccccCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF------C-S--NLQRFYVATSRQLKRLESVSRS-PIYSHFGE 346 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~--~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 346 (602)
+. .++.+++.... . . ..........+..+.++.++.. ........
T Consensus 354 ---~~----------------------~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 408 (510)
T PRK09700 354 ---PN----------------------FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT 408 (510)
T ss_pred ---CC----------------------CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc
Confidence 00 00000000000 0 0 0000000011122333344443 33455566
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
.|| ||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|||+|||+++.+.. ||++++|++|+
T Consensus 409 ~LS--gGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 409 ELS--GGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGR 486 (510)
T ss_pred cCC--hHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCE
Confidence 777 599999999999999999999999999999999999999998864 47899999999999987 99999999999
Q ss_pred EEeecCh
Q psy3001 425 VVEFDSP 431 (602)
Q Consensus 425 i~~~g~~ 431 (602)
++..++.
T Consensus 487 i~~~~~~ 493 (510)
T PRK09700 487 LTQILTN 493 (510)
T ss_pred EEEEecC
Confidence 9887655
No 314
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=2.4e-31 Score=264.97 Aligned_cols=193 Identities=17% Similarity=0.220 Sum_probs=141.2
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
....++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|. +++++|.+...
T Consensus 36 ~~~il~~is~~i~~G-e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~---- 97 (264)
T PRK13546 36 TFFALDDISLKAYEG-DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLS---- 97 (264)
T ss_pred ceEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCC----
Confidence 346899999999998 999999999999999999999999999999999984 22333321100
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+ ..+ +.+++... .............. .+......+........+| +|
T Consensus 98 ---~----------------~~t------v~enl~~~~~~~~~~~~~~~~~~~~---~l~~~~l~~~~~~~~~~LS--~G 147 (264)
T PRK13546 98 ---G----------------QLT------GIENIEFKMLCMGFKRKEIKAMTPK---IIEFSELGEFIYQPVKKYS--SG 147 (264)
T ss_pred ---C----------------CCc------HHHHHHHHHHHcCCCHHHHHHHHHH---HHHHcCCchhhcCCcccCC--HH
Confidence 0 000 00000000 00000111111111 1122233333444556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
|+||++||||++.+|++|||||||++||+.+...+.+.+.++. .++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 148 q~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~ 227 (264)
T PRK13546 148 MRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGEL 227 (264)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998764 47899999999999987 999999999999999998
Q ss_pred hHHhhc
Q psy3001 432 SVLMKN 437 (602)
Q Consensus 432 ~~l~~~ 437 (602)
+++...
T Consensus 228 ~~~~~~ 233 (264)
T PRK13546 228 DDVLPK 233 (264)
T ss_pred HHHHHH
Confidence 887664
No 315
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.97 E-value=1.1e-31 Score=293.35 Aligned_cols=206 Identities=22% Similarity=0.277 Sum_probs=151.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++|+||++.+| ++++|+|+||||||||+|+|+|+++|++|+|.++|.++...+. ...++.++|++|++...
T Consensus 268 ~l~~isl~i~~G-e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~------ 340 (501)
T PRK11288 268 LREPISFSVRAG-EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAE------ 340 (501)
T ss_pred cccceeEEEeCC-cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhC------
Confidence 689999999998 9999999999999999999999999999999999998865433 34567899999975310
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc---ccc--h-hHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCC
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCS--N-LQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGN 351 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~-~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs 351 (602)
.++. +.++.+++... ... . .........+..+.++.++.. .........||
T Consensus 341 --~~~~------------------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS-- 398 (501)
T PRK11288 341 --GIIP------------------VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLS-- 398 (501)
T ss_pred --CCcC------------------CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCC--
Confidence 0110 00010000000 000 0 000000011122233344432 33455556777
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .+.|||++||+++++.. ||++++|++|+++..+
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 699999999999999999999999999999999999999998864 47899999999999988 9999999999999988
Q ss_pred ChhHH
Q psy3001 430 SPSVL 434 (602)
Q Consensus 430 ~~~~l 434 (602)
++++.
T Consensus 479 ~~~~~ 483 (501)
T PRK11288 479 AREQA 483 (501)
T ss_pred ccccC
Confidence 77654
No 316
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=1.4e-31 Score=257.66 Aligned_cols=186 Identities=22% Similarity=0.225 Sum_probs=137.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+++.+++++|.+.
T Consensus 14 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~~~~~~------- 84 (204)
T PRK13538 14 RILFSGLSFTLNAG-ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYLGHQPG------- 84 (204)
T ss_pred EEEEecceEEECCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEeCCccc-------
Confidence 35799999999998 999999999999999999999999999999999999887654 356778999998632
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. ..++.+++.... .... ....+..+.++.++..+........+| +||||
T Consensus 85 ----~~~------------------~~tv~e~l~~~~~~~~~----~~~~~~~~~l~~~gl~~~~~~~~~~LS--~G~~q 136 (204)
T PRK13538 85 ----IKT------------------ELTALENLRFYQRLHGP----GDDEALWEALAQVGLAGFEDVPVRQLS--AGQQR 136 (204)
T ss_pred ----cCc------------------CCcHHHHHHHHHHhcCc----cHHHHHHHHHHHcCCHHHhhCChhhcC--HHHHH
Confidence 110 001111100000 0000 001111222333333333344455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEE
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVL 420 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l 420 (602)
|++||||++++|++++|||||++||+.+...+.+.|+++. ++.|+|++||+++++.. .+|++++
T Consensus 137 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 137 RVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999999999999999999998864 46899999999999987 5677766
No 317
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=7.9e-32 Score=241.68 Aligned_cols=202 Identities=24% Similarity=0.307 Sum_probs=151.5
Q ss_pred CCCCCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhh
Q psy3001 193 WPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 193 ~~~~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~ 272 (602)
|+..+...++|+|+++.+| +.++++||||||||||+++++|+.+|+.|+|.+||.++..-+. .=|+|+|+....
T Consensus 13 y~g~~~~~le~vsL~ia~g-e~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----ergvVFQ~~~Ll 86 (259)
T COG4525 13 YEGKPRSALEDVSLTIASG-ELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERGVVFQNEALL 86 (259)
T ss_pred cCCcchhhhhccceeecCC-CEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cceeEeccCccc
Confidence 4444567899999999998 9999999999999999999999999999999999998876543 237888874322
Q ss_pred hhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
||+. +.+++.+. ......+ ..+.....+.+..+++...-.++.-.+|
T Consensus 87 -------PWl~----------------------~~dNvafgL~l~Gi~k-~~R~~~a~q~l~~VgL~~~~~~~i~qLS-- 134 (259)
T COG4525 87 -------PWLN----------------------VIDNVAFGLQLRGIEK-AQRREIAHQMLALVGLEGAEHKYIWQLS-- 134 (259)
T ss_pred -------hhhH----------------------HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhCcccccccceEeec--
Confidence 3322 01110000 0001111 1112222333445566555566666788
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEe--CceEE
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLD--KGLVV 426 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~--~G~i~ 426 (602)
||||||+.|||||..+|+.|+||||+++||.-+++.++..|-+.. .|+.+++|||++++..- +++++||. .|+|+
T Consensus 135 GGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv 214 (259)
T COG4525 135 GGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVV 214 (259)
T ss_pred chHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceee
Confidence 599999999999999999999999999999999999999887653 37999999999999877 99999997 68998
Q ss_pred eecChh
Q psy3001 427 EFDSPS 432 (602)
Q Consensus 427 ~~g~~~ 432 (602)
+.-++.
T Consensus 215 ~~~~~d 220 (259)
T COG4525 215 ERLPLD 220 (259)
T ss_pred EecCCC
Confidence 765544
No 318
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.97 E-value=1.4e-31 Score=292.55 Aligned_cols=208 Identities=24% Similarity=0.358 Sum_probs=152.4
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH-HhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++.++|+||++...
T Consensus 278 ~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~------ 350 (510)
T PRK15439 278 GFRNISLEVRAG-EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSS------ 350 (510)
T ss_pred CccceeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhC------
Confidence 488999999998 999999999999999999999999999999999999988766554 456899999974210
Q ss_pred CceeEeeecccceeeeccccceeeccccccc-cc-ccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL-II-TPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQR 355 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~ 355 (602)
.++. ..+.. +.+... .. .......... ..+..+.++.++.. .........+| ||||
T Consensus 351 --~l~~------------~~t~~--~~l~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LS--gG~k 409 (510)
T PRK15439 351 --GLYL------------DAPLA--WNVCALTHNRRGFWIKPARE---NAVLERYRRALNIKFNHAEQAARTLS--GGNQ 409 (510)
T ss_pred --CccC------------CCcHH--HHHHhhhhhhhccccChHHH---HHHHHHHHHHcCCCCCCccCccccCC--cHHH
Confidence 0000 00000 000000 00 0000000000 11122233344443 34455566777 5999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|||+|||+++++.. ||++++|++|+++..+++++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998864 47899999999999988 99999999999998887765
Q ss_pred Hh
Q psy3001 434 LM 435 (602)
Q Consensus 434 l~ 435 (602)
+.
T Consensus 490 ~~ 491 (510)
T PRK15439 490 IN 491 (510)
T ss_pred CC
Confidence 53
No 319
>KOG0058|consensus
Probab=99.97 E-value=1.6e-31 Score=284.08 Aligned_cols=121 Identities=32% Similarity=0.571 Sum_probs=116.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||+||+|||+|+||||++++|.++|+|++|+|.+||+||+.++...+|++||+|.|||.||++||+|||.
T Consensus 484 lk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~ 563 (716)
T KOG0058|consen 484 LKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIA 563 (716)
T ss_pred hcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
++- ..++|||.+|+++++.++|+..+|+||+|.|||+|+.|
T Consensus 564 YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 564 YGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred cCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 664 46999999999999999999999999999999999875
No 320
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.97 E-value=5.3e-31 Score=264.35 Aligned_cols=193 Identities=23% Similarity=0.368 Sum_probs=138.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 51 ~vL~~vs~~i~~G-e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i~yv~q~~~-------- 108 (282)
T cd03291 51 PVLKNINLKIEKG-EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFSSQFSW-------- 108 (282)
T ss_pred cceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EEEEEeCccc--------
Confidence 4788888888888 99999999999999999999999999999999988 3899999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH--HHHHHHhhcc--cCCcccccCCcCCCChhh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS--RQLKRLESVS--RSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~--~~~~~~~~~~~lsgs~Gq 354 (602)
++ ..+ +.+++................ ...+.+.... ........+..+| +||
T Consensus 109 ---l~-------------~~t------v~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LS--gGq 164 (282)
T cd03291 109 ---IM-------------PGT------IKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLS--GGQ 164 (282)
T ss_pred ---cc-------------ccC------HHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCC--HHH
Confidence 11 101 111100000000000000000 0001111110 0111223345666 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHH-HHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI-RSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.+ +...++.|+|++||+++.+..||++++|++|+++..|++++
T Consensus 165 ~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 244 (282)
T cd03291 165 RARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 244 (282)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999888754 55555789999999999987799999999999999999888
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+...
T Consensus 245 ~~~~ 248 (282)
T cd03291 245 LQSL 248 (282)
T ss_pred HHhc
Confidence 7653
No 321
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.97 E-value=2.1e-31 Score=292.53 Aligned_cols=205 Identities=23% Similarity=0.408 Sum_probs=149.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEEC-Cee---cCCCC---hHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID-GVD---IRTLG---LHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~-g~~---~~~~~---~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++ |.+ +...+ ...+++.++|++|++.
T Consensus 297 ~~il~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEVKEG-EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 35799999999988 9999999999999999999999999999999996 643 33332 2245678999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-----cccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-----IYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~ 345 (602)
. +. ..++.+++........... ....+..+.++.++... ......
T Consensus 376 l-----------~~------------------~~tv~e~l~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 425 (520)
T TIGR03269 376 L-----------YP------------------HRTVLDNLTEAIGLELPDE-LARMKAVITLKMVGFDEEKAEEILDKYP 425 (520)
T ss_pred c-----------CC------------------CCcHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCCCCccchhhhhCCh
Confidence 1 10 0011111000000000000 01112222333444332 234556
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
..|| ||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + +.|||+|||+++.+.. ||++++|++
T Consensus 426 ~~LS--gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~ 503 (520)
T TIGR03269 426 DELS--EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRD 503 (520)
T ss_pred hhCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6777 699999999999999999999999999999999999999998864 3 6899999999999987 999999999
Q ss_pred ceEEeecChhHHh
Q psy3001 423 GLVVEFDSPSVLM 435 (602)
Q Consensus 423 G~i~~~g~~~~l~ 435 (602)
|++++.|+++++.
T Consensus 504 G~i~~~g~~~~~~ 516 (520)
T TIGR03269 504 GKIVKIGDPEEIV 516 (520)
T ss_pred CEEEEECCHHHHH
Confidence 9999988877764
No 322
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.97 E-value=2.9e-31 Score=255.74 Aligned_cols=179 Identities=27% Similarity=0.378 Sum_probs=130.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|+|+||++++| ++++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 19 ~il~~~s~~i~~G-~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~i~~~~q~~~-------- 76 (204)
T cd03250 19 FTLKDINLEVPKG-ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPW-------- 76 (204)
T ss_pred ceeeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------EEEEEecCch--------
Confidence 5899999999998 99999999999999999999999999999999998 5899999842
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHH---HHHHhhc--ccCCcccccCCcCCCChh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ---LKRLESV--SRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~--~~~~~~~~~~~~lsgs~G 353 (602)
++ ..+ +.+++....... ........+. .+.+... +...........+| +|
T Consensus 77 ---l~-------------~~t------~~enl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS--~G 131 (204)
T cd03250 77 ---IQ-------------NGT------IRENILFGKPFD-EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLS--GG 131 (204)
T ss_pred ---hc-------------cCc------HHHHhccCCCcC-HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCC--HH
Confidence 22 111 111110000000 0000010100 1111111 12222344455677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHH-HHHHh-ccccEEEEeeecccccccCCeEEEEeCce
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQS-TIRSE-FAHCTVLTIAHRLNTIIDSDRVLVLDKGL 424 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~-~l~~~-~~~~tvi~itH~l~~i~~~d~i~~l~~G~ 424 (602)
||||++|||||+.+|++++|||||++||+.+.+.+.+ .++.. .++.|||++||+++.+..||++++|++|+
T Consensus 132 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 132 QKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999999999999999999988887 45554 34689999999999988899999999985
No 323
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=3.4e-31 Score=256.97 Aligned_cols=186 Identities=21% Similarity=0.239 Sum_probs=137.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+++||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|+++... ..++.++|++|++.
T Consensus 24 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~~~~q~~~------- 92 (214)
T PRK13543 24 EPVFGPLDFHVDAG-EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAYLGHLPG------- 92 (214)
T ss_pred ceeeecceEEECCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceEEeecCcc-------
Confidence 35799999999998 99999999999999999999999999999999999988642 34567999998632
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++... ...... ......+.+..++...........+| +||||
T Consensus 93 ----~~~------------~~------t~~e~l~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 144 (214)
T PRK13543 93 ----LKA------------DL------STLENLHFLCGLHGRR----AKQMPGSALAIVGLAGYEDTLVRQLS--AGQKK 144 (214)
T ss_pred ----ccc------------CC------cHHHHHHHHHHhcCCc----HHHHHHHHHHHcCChhhccCChhhCC--HHHHH
Confidence 110 00 011100000 000000 00111122223333333344455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
|++||||++.+|++|+|||||++||+.+.+++.+.+++.. +++|+|++||+++.+.. ||++++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999999999999998753 46899999999999988 999999864
No 324
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.97 E-value=2.3e-31 Score=260.43 Aligned_cols=190 Identities=24% Similarity=0.347 Sum_probs=135.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEEC--Ce--ecCCCChHH---H-hhccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID--GV--DIRTLGLHT---L-RSRLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~--g~--~~~~~~~~~---~-~~~i~~v~Q~~ 269 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++ |. ++...+... + ++.++|++|++
T Consensus 21 ~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 99 (224)
T TIGR02324 21 LPVLKNVSLTVNAG-ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFL 99 (224)
T ss_pred eEEEecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccc
Confidence 35899999999998 9999999999999999999999999999999998 42 555555443 2 45799999974
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCC-cccccCCc
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSP-IYSHFGET 347 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~ 347 (602)
.. +. +.++.+++.... ....... ....+..+.++.++... ........
T Consensus 100 ~~-----------~~------------------~~tv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (224)
T TIGR02324 100 RV-----------IP------------------RVSALEVVAEPLLERGVPRE-AARARARELLARLNIPERLWHLPPAT 149 (224)
T ss_pred cc-----------CC------------------CccHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHcCCchhhhhCCccc
Confidence 21 10 000000000000 0000000 00111222233333332 22334566
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEE
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVL 420 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l 420 (602)
+| +|||||++|||||+.+|+++||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||+++.+
T Consensus 150 LS--~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 150 FS--GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 77 699999999999999999999999999999999999999998864 47899999999999976 9999876
No 325
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.97 E-value=3.2e-31 Score=289.86 Aligned_cols=205 Identities=22% Similarity=0.316 Sum_probs=148.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-CCceEEECCeecCCCCh-HHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-ADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++...+. ..+++.++|++|++...
T Consensus 273 ~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~--- 348 (500)
T TIGR02633 273 RKRVDDVSFSLRRG-EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRH--- 348 (500)
T ss_pred ccccccceeEEeCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhC---
Confidence 34799999999998 99999999999999999999999995 89999999998865443 45678899999984210
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc----cc--chhHHHHHHHHHHHHHHhhcccCC-cccccCCcC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP----FC--SNLQRFYVATSRQLKRLESVSRSP-IYSHFGETV 348 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l 348 (602)
.++. . .++.+++... .. ..... .....+..+.++.++... ........+
T Consensus 349 -----~l~~------------~------~tv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~L 404 (500)
T TIGR02633 349 -----GIVP------------I------LGVGKNITLSVLKSFCFKMRIDA-AAELQIIGSAIQRLKVKTASPFLPIGRL 404 (500)
T ss_pred -----CcCC------------C------CCHHHHhcchhhhhhccCCcCCH-HHHHHHHHHHHHhcCccCCCccCccccC
Confidence 0000 0 0000000000 00 00000 000111222233333322 234445567
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
| ||||||++|||||+.+|++|||||||++||+.+...+.+.++.+. ++.|||++||+++++.. ||++++|++|+++
T Consensus 405 S--gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 405 S--GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482 (500)
T ss_pred C--HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 7 699999999999999999999999999999999999999998864 47899999999999987 9999999999998
Q ss_pred eecChh
Q psy3001 427 EFDSPS 432 (602)
Q Consensus 427 ~~g~~~ 432 (602)
...+..
T Consensus 483 ~~~~~~ 488 (500)
T TIGR02633 483 GDFVNH 488 (500)
T ss_pred EEEccc
Confidence 766443
No 326
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.97 E-value=4.7e-31 Score=256.97 Aligned_cols=192 Identities=24% Similarity=0.362 Sum_probs=136.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh----HHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~----~~~~~~i~~v~Q~~~~~~~ 274 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ...++.++|++|++.
T Consensus 15 ~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~---- 89 (218)
T cd03290 15 ATLSNINIRIPTG-QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW---- 89 (218)
T ss_pred cceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCc----
Confidence 4799999999998 9999999999999999999999999999999999998765542 235678999999742
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHH---HHHhh--cccCCcccccCCcCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL---KRLES--VSRSPIYSHFGETVT 349 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~--~~~~~~~~~~~~~ls 349 (602)
++ .. ++.+++.......... .....+.+ +.+.. .+...........+|
T Consensus 90 -------~~-------------~~------t~~~nl~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS 142 (218)
T cd03290 90 -------LL-------------NA------TVEENITFGSPFNKQR-YKAVTDACSLQPDIDLLPFGDQTEIGERGINLS 142 (218)
T ss_pred -------cc-------------cc------cHHHHHhhcCcCCHHH-HHHHHHHhCcHHHHHhCcCccccCcccCCCcCC
Confidence 11 10 1111110000000000 00111111 00100 001111223445667
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHH--HHHHhc-cccEEEEeeecccccccCCeEEEEeCce
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS--TIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGL 424 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~--~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~ 424 (602)
+|||||++||||++.+|++|||||||++||+.+...+.+ .++... .+.|+|++||+++.+..||++++|++|.
T Consensus 143 --~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 143 --GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred --HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 699999999999999999999999999999999998887 555443 3689999999999987799999999873
No 327
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=3.4e-31 Score=316.49 Aligned_cols=204 Identities=20% Similarity=0.288 Sum_probs=156.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|+.++++||++.
T Consensus 943 k~aL~~lsl~I~~G-ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG~~pQ~~~------- 1013 (2272)
T TIGR01257 943 RPAVDRLNITFYEN-QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNI------- 1013 (2272)
T ss_pred ceEEEeeEEEEcCC-cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEEEEecCCc-------
Confidence 34566667766666 9999999999999999999999999999999999999864 45667889999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. ..++.+.+... ....... .....+..+.++.+++.........+|| |||||
T Consensus 1014 ----L~~------------------~LTV~E~L~f~~~lkg~~~-~~~~~~v~~lL~~vgL~~~~~~~~~~LS--GGqKQ 1068 (2272)
T TIGR01257 1014 ----LFH------------------HLTVAEHILFYAQLKGRSW-EEAQLEMEAMLEDTGLHHKRNEEAQDLS--GGMQR 1068 (2272)
T ss_pred ----CCC------------------CCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCchhhcCChhhCC--HHHHH
Confidence 110 00111110000 0000000 0011122333445555555566667788 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
|++|||||+.+|++|+|||||++||+.+++.+++.|++..+++|||++||+++++.. ||||++|++|+++..|++.++.
T Consensus 1069 RLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999987 9999999999999999988775
No 328
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.97 E-value=3.8e-31 Score=245.69 Aligned_cols=150 Identities=31% Similarity=0.388 Sum_probs=124.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|. +.++|++|++.
T Consensus 15 ~~l~~i~l~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~q~~~-------- 74 (166)
T cd03223 15 VLLKDLSFEIKPG-DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFLPQRPY-------- 74 (166)
T ss_pred eeeecCeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEECCCCc--------
Confidence 4799999999998 999999999999999999999999999999999873 57899999731
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
++ +.++.+++ . . . ....+| +|||||+
T Consensus 75 ---~~-------------------~~tv~~nl--------~--------------~-~-------~~~~LS--~G~~~rv 100 (166)
T cd03223 75 ---LP-------------------LGTLREQL--------I--------------Y-P-------WDDVLS--GGEQQRL 100 (166)
T ss_pred ---cc-------------------cccHHHHh--------h--------------c-c-------CCCCCC--HHHHHHH
Confidence 11 00111110 0 0 0 234566 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCce
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGL 424 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~ 424 (602)
+|||||+.+|+++||||||++||+.+.+.+.+.+++. +.|+|++||+++....||++++|+++.
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999999999999999999999999876 589999999998765599999998764
No 329
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=5.4e-31 Score=252.84 Aligned_cols=183 Identities=18% Similarity=0.213 Sum_probs=134.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|++|++.
T Consensus 14 ~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~~q~~~------- 84 (200)
T PRK13540 14 QPLLQQISFHLPAG-GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRSG------- 84 (200)
T ss_pred eeEEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEeccccc-------
Confidence 35899999999998 9999999999999999999999999999999999998864 34567788999999632
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
++. .. ++.+++......... ..+..+.++.++...........+| +||+||
T Consensus 85 ----~~~------------~~------tv~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~~r 135 (200)
T PRK13540 85 ----INP------------YL------TLRENCLYDIHFSPG-----AVGITELCRLFSLEHLIDYPCGLLS--SGQKRQ 135 (200)
T ss_pred ----cCc------------CC------CHHHHHHHHHhcCcc-----hHHHHHHHHHcCCchhhhCChhhcC--HHHHHH
Confidence 110 00 111110000000000 0011122222222222233334566 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEE
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVL 418 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~ 418 (602)
++||||++++|++|||||||++||+.+...+.+.|++.. ++.|+|++||+.+.+..||.-.
T Consensus 136 v~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 136 VALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 999999999999999999999999999999999999863 4789999999999998888643
No 330
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.97 E-value=1.1e-30 Score=275.03 Aligned_cols=192 Identities=20% Similarity=0.223 Sum_probs=140.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.+.. +....++.++
T Consensus 37 ~~IL~nVSfsI~~G-EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~------i~~~~~l~~~---------- 99 (549)
T PRK13545 37 HYALNNISFEVPEG-EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL------IAISSGLNGQ---------- 99 (549)
T ss_pred ceEEeeeEEEEeCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee------EEeccccCCC----------
Confidence 35799999999998 999999999999999999999999999999999996520 0000000000
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-c--cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F--CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
. ++.+++... . ......... +..+.++.++..+........+| |||
T Consensus 100 --------------------l------TV~EnL~l~~~~~~~~~~e~~e---~i~elLe~lgL~~~ld~~~~~LS--GGQ 148 (549)
T PRK13545 100 --------------------L------TGIENIELKGLMMGLTKEKIKE---IIPEIIEFADIGKFIYQPVKTYS--SGM 148 (549)
T ss_pred --------------------C------cHHHHHHhhhhhcCCCHHHHHH---HHHHHHHHcCChhHhhCCcccCC--HHH
Confidence 0 011100000 0 000001111 11122223333333445556677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 149 rQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~ 228 (549)
T PRK13545 149 KSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998864 47899999999999987 9999999999999999998
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
++...
T Consensus 229 el~~~ 233 (549)
T PRK13545 229 EVVDH 233 (549)
T ss_pred HHHhh
Confidence 87654
No 331
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=8.1e-31 Score=252.95 Aligned_cols=184 Identities=26% Similarity=0.272 Sum_probs=134.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .. +++.+++++|.+.
T Consensus 15 ~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~~~~~~~------- 83 (207)
T PRK13539 15 RVLFSGLSFTLAAG-EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHYLGHRNA------- 83 (207)
T ss_pred eEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEEecCCCc-------
Confidence 34799999999998 9999999999999999999999999999999999988642 22 7788999997521
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++... ...... ..+..+.++.++...........+| +||||
T Consensus 84 ----~~~------------~~------tv~~~l~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 134 (207)
T PRK13539 84 ----MKP------------AL------TVAENLEFWAAFLGGE-----ELDIAAALEAVGLAPLAHLPFGYLS--AGQKR 134 (207)
T ss_pred ----CCC------------CC------cHHHHHHHHHHhcCCc-----HHHHHHHHHHcCCHHHHcCChhhcC--HHHHH
Confidence 110 00 111110000 000000 0111222223333333333445667 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeecccccccCCeEEEEeC
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
|++||||++++|++|||||||++||+.+...+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 135 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 135 RVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999999999999999875 357999999999999988 98887743
No 332
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.97 E-value=1.1e-30 Score=250.45 Aligned_cols=182 Identities=19% Similarity=0.247 Sum_probs=131.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+++.++|++|++.
T Consensus 13 ~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~------- 83 (198)
T TIGR01189 13 RMLFEGLSFTLNAG-EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYLGHLPG------- 83 (198)
T ss_pred EEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEeccCcc-------
Confidence 45799999999998 999999999999999999999999999999999999887654 356778999998632
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++... ...... ..+..+.++.++..+........+| +||||
T Consensus 84 ----~~~------------~~------tv~~~l~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 134 (198)
T TIGR01189 84 ----LKP------------EL------SALENLHFWAAIHGGA-----QRTIEDALAAVGLTGFEDLPAAQLS--AGQQR 134 (198)
T ss_pred ----ccc------------CC------cHHHHHHHHHHHcCCc-----HHHHHHHHHHcCCHHHhcCChhhcC--HHHHH
Confidence 110 00 111110000 000000 0011122223333333344455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeecccccccCCeEE
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIIDSDRVL 418 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~~d~i~ 418 (602)
|++||||++.+|++++|||||++||+.+...+.+.++++ .++.|+|++||+...+. |++++
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~ 196 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL 196 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence 999999999999999999999999999999999999886 35789999999985543 35443
No 333
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=7.6e-31 Score=258.83 Aligned_cols=178 Identities=22% Similarity=0.360 Sum_probs=128.3
Q ss_pred EEeeeEEEEe-----cCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 200 EFKDYKVRYR-----EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 200 ~~~~vs~~~~-----~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
.++++++... +| ++++|+|+||||||||+++|+|+++|++|+|.++|. .+++++|++...+
T Consensus 9 ~~~~~~l~~~~~~i~~G-e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~~~~~~- 74 (246)
T cd03237 9 TLGEFTLEVEGGSISES-EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQYIKADY- 74 (246)
T ss_pred ccCcEEEEEecCCcCCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecccccCCC-
Confidence 5566666665 45 999999999999999999999999999999999984 5889998632110
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
. .++.+++..... . .........+.++.++...........+| |||
T Consensus 75 ----------------------~------~tv~e~l~~~~~-~---~~~~~~~~~~~l~~l~l~~~~~~~~~~LS--gGe 120 (246)
T cd03237 75 ----------------------E------GTVRDLLSSITK-D---FYTHPYFKTEIAKPLQIEQILDREVPELS--GGE 120 (246)
T ss_pred ----------------------C------CCHHHHHHHHhh-h---ccccHHHHHHHHHHcCCHHHhhCChhhCC--HHH
Confidence 0 011111000000 0 00000001122223333333444556677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
|||++|||||+.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||++++|+++..
T Consensus 121 ~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 121 LQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 9999999999999999999999999999999999999988743 7899999999999987 999999976543
No 334
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.97 E-value=9.2e-31 Score=285.44 Aligned_cols=207 Identities=22% Similarity=0.319 Sum_probs=149.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
..++|+||++++| ++++|+|+||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.++|++|++....
T Consensus 262 ~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~---- 336 (491)
T PRK10982 262 PSIRDVSFDLHKG-EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTG---- 336 (491)
T ss_pred cccceeeEEEeCC-cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCC----
Confidence 3689999999998 99999999999999999999999999999999999999876654 35677999999743110
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccc--ccccc--hhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII--TPFCS--NLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~ 352 (602)
++. ..+...+ .+.+.+. ..... ....... +..+.++.++.. .........+| |
T Consensus 337 ----~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~LS--g 394 (491)
T PRK10982 337 ----IYA------------YLDIGFN-SLISNIRNYKNKVGLLDNSRMKS---DTQWVIDSMRVKTPGHRTQIGSLS--G 394 (491)
T ss_pred ----ccc------------CCcHHHh-eehhhhhhhcccccccCcHHHHH---HHHHHHHhcCccCCCcccccccCC--c
Confidence 000 0000000 0000000 00000 0001111 112222233332 23455556777 5
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||++||||++.+|++|||||||++||+.+...+.+.++.+. ++.|||++||+++++.. |||+++|++|+++..++
T Consensus 395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998764 47999999999999987 99999999999997665
Q ss_pred hh
Q psy3001 431 PS 432 (602)
Q Consensus 431 ~~ 432 (602)
.+
T Consensus 475 ~~ 476 (491)
T PRK10982 475 TK 476 (491)
T ss_pred cc
Confidence 53
No 335
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.97 E-value=1.2e-30 Score=236.03 Aligned_cols=130 Identities=27% Similarity=0.501 Sum_probs=117.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..+++++|...+| ++++|+|+||||||||+++|+|+++|++|+|.++|. ..++|++|
T Consensus 14 ~~l~~~~~~~~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~~----------- 70 (144)
T cd03221 14 LLLKDISLTINPG-DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYFEQ----------- 70 (144)
T ss_pred eEEEeeEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEEcc-----------
Confidence 4799999999998 999999999999999999999999999999999983 23333331
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+| +||+||+
T Consensus 71 ---------------------------------------------------------------------lS--~G~~~rv 79 (144)
T cd03221 71 ---------------------------------------------------------------------LS--GGEKMRL 79 (144)
T ss_pred ---------------------------------------------------------------------CC--HHHHHHH
Confidence 44 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
+|||||+++|++++|||||++||+.+...+.+.++++ ++|++++||+++.+.. ||++++|++|+
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999876 4799999999999987 99999999985
No 336
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.3e-30 Score=242.56 Aligned_cols=199 Identities=24% Similarity=0.335 Sum_probs=145.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+..++|+|+++++| |..+|+|+||||||||+++++|.++|++|.+.+-|+....-+. .++|++||+|.-.....|..
T Consensus 44 k~iL~~isW~V~~g-e~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~- 121 (257)
T COG1119 44 KKILGDLSWQVNPG-EHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV- 121 (257)
T ss_pred EeeccccceeecCC-CcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc-
Confidence 33444444444455 8899999999999999999999999999999999999888777 89999999998643322210
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccc-------hh-HHHHHHHHHHHHHHhhcccCCcccccCCcC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS-------NL-QRFYVATSRQLKRLESVSRSPIYSHFGETV 348 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 348 (602)
++.+.+.+...... .. .....+. ...++.++...+.+..-.++
T Consensus 122 --------------------------~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a---~~lle~~g~~~la~r~~~~L 172 (257)
T COG1119 122 --------------------------RETVRDVVLSGFFASIGIYQEDLTAEDLAAA---QWLLELLGAKHLADRPFGSL 172 (257)
T ss_pred --------------------------ccccceeeeecccccccccccCCCHHHHHHH---HHHHHHcchhhhccCchhhc
Confidence 11111111100000 00 1111222 22233444444455555566
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc---ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA---HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
| -|||||+.|||||+++|++||||||+++||...++.+.+.+.++.. +.++|+|||..+++.. .++++.+++|+
T Consensus 173 S--~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~ 250 (257)
T COG1119 173 S--QGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGE 250 (257)
T ss_pred C--HhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCc
Confidence 7 6999999999999999999999999999999999999999888643 4799999999999988 79999999999
Q ss_pred EEeec
Q psy3001 425 VVEFD 429 (602)
Q Consensus 425 i~~~g 429 (602)
++..|
T Consensus 251 v~~~g 255 (257)
T COG1119 251 VVAQG 255 (257)
T ss_pred eeecc
Confidence 98765
No 337
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.97 E-value=1.6e-30 Score=310.81 Aligned_cols=206 Identities=19% Similarity=0.188 Sum_probs=155.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||.+.+| |++||+|+||||||||+|+|+|+++|++|+|.++|.++.. .....++.|||+||++..
T Consensus 1952 ~~aL~~ISf~I~~G-Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~IGy~pQ~~~L------ 2023 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPG-ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAI------ 2023 (2272)
T ss_pred ceEEEeeEEEEcCC-cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhEEEEeccccC------
Confidence 45788888888887 9999999999999999999999999999999999999865 455678899999997321
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccc-cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+ ..-++++.+.. ......... ....+..+.++.+++..........+| |||||
T Consensus 2024 -----~------------------~~LTv~E~L~l~a~l~g~~~~-~~~~~v~~lLe~lgL~~~~dk~~~~LS--GGqKq 2077 (2272)
T TIGR01257 2024 -----D------------------DLLTGREHLYLYARLRGVPAE-EIEKVANWSIQSLGLSLYADRLAGTYS--GGNKR 2077 (2272)
T ss_pred -----C------------------CCCCHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHcCCHHHhcCChhhCC--HHHHH
Confidence 1 00011111000 000000000 001111122334444444455556777 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|+++||||+.+|++|+|||||++||+.+++.+++.|++. .+|+|||++||+++++.. |||+++|++|+++..|+++++
T Consensus 2078 RLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999886 457999999999999988 999999999999999999987
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
...
T Consensus 2158 k~~ 2160 (2272)
T TIGR01257 2158 KSK 2160 (2272)
T ss_pred HHH
Confidence 543
No 338
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.97 E-value=1.1e-30 Score=242.65 Aligned_cols=201 Identities=21% Similarity=0.332 Sum_probs=154.1
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
....++|+||..++| ++.|++|+|||||||.+++|.|+++|++|+|.++|.+++. ..+.+|||+|.+....
T Consensus 14 ~k~av~~isf~v~~G-~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGyLPEERGLy---- 84 (300)
T COG4152 14 DKKAVDNISFEVPPG-EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGYLPEERGLY---- 84 (300)
T ss_pred ceeeecceeeeecCC-eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcccChhhhccC----
Confidence 457899999999999 9999999999999999999999999999999999988764 4577899999863211
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccc-cc--ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII-TP--FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
....+.+.+. .. ......+.....+..+++++ ........-.+|| -|
T Consensus 85 -------------------------~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~---i~~~~~~kIk~LS--KG 134 (300)
T COG4152 85 -------------------------PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLE---IVGKKTKKIKELS--KG 134 (300)
T ss_pred -------------------------ccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcc---ccccccchHHHhh--hh
Confidence 1111111000 00 01111222223333333322 2222233334566 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
.+|+|.+-.+++++|+++|||||+|+|||.+.+.+.+.+.+++ +|.|||+.||+++.+.. ||+++.|++|+.|-+|+.
T Consensus 135 nqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v 214 (300)
T COG4152 135 NQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTV 214 (300)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccH
Confidence 9999999999999999999999999999999999999998875 58999999999999998 999999999999999998
Q ss_pred hHHhh
Q psy3001 432 SVLMK 436 (602)
Q Consensus 432 ~~l~~ 436 (602)
++..+
T Consensus 215 ~~ir~ 219 (300)
T COG4152 215 EDIRR 219 (300)
T ss_pred HHHHH
Confidence 88754
No 339
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.97 E-value=3.2e-30 Score=288.47 Aligned_cols=206 Identities=24% Similarity=0.333 Sum_probs=157.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH----hhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~----~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| |+++|+|+||||||||+++|+|+++|++|+|.+||+++...+...+ ++.++|++|++.
T Consensus 21 ~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--- 96 (648)
T PRK10535 21 VEVLKGISLDIYAG-EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYH--- 96 (648)
T ss_pred eeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcc---
Confidence 35799999999998 9999999999999999999999999999999999999998876654 578999999742
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. ..+...|-.. .. ....... .....+..+.++.++..+........+| +|
T Consensus 97 --------l~~------------~~tv~enl~~-~~----~~~~~~~-~~~~~~~~~~l~~lgl~~~~~~~~~~LS--~G 148 (648)
T PRK10535 97 --------LLS------------HLTAAQNVEV-PA----VYAGLER-KQRLLRAQELLQRLGLEDRVEYQPSQLS--GG 148 (648)
T ss_pred --------cCC------------CCCHHHHHHH-HH----HHcCCCH-HHHHHHHHHHHHHCCChhhhcCCcccCC--HH
Confidence 110 0010000000 00 0000000 0111122333334444444555666777 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
|+||++|||||+++|++|+|||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||++++|++|++++.|+.+
T Consensus 149 q~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~ 228 (648)
T PRK10535 149 QQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQ 228 (648)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCcc
Confidence 9999999999999999999999999999999999999998875 479999999999988779999999999999999888
Q ss_pred HHh
Q psy3001 433 VLM 435 (602)
Q Consensus 433 ~l~ 435 (602)
+..
T Consensus 229 ~~~ 231 (648)
T PRK10535 229 EKV 231 (648)
T ss_pred ccc
Confidence 765
No 340
>PLN03211 ABC transporter G-25; Provisional
Probab=99.97 E-value=3.2e-30 Score=287.04 Aligned_cols=207 Identities=22% Similarity=0.239 Sum_probs=149.4
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC--CceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA--DGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~--~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
++..++|+|+++.+| |++||+||||||||||+++|+|..+|+ +|+|.+||.++.. ..++.++||+|++.
T Consensus 80 ~~~iL~~vs~~i~~G-e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~---- 150 (659)
T PLN03211 80 ERTILNGVTGMASPG-EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDI---- 150 (659)
T ss_pred CCeeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccc----
Confidence 356899999999998 999999999999999999999999985 8999999998742 34567999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcc-----cccCCcCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIY-----SHFGETVT 349 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~ls 349 (602)
++. ..+...+-........+.....++.. .+..+.++.+++.... +.....+|
T Consensus 151 -------l~~------------~lTV~E~l~~~a~~~~~~~~~~~~~~---~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 208 (659)
T PLN03211 151 -------LYP------------HLTVRETLVFCSLLRLPKSLTKQEKI---LVAESVISELGLTKCENTIIGNSFIRGIS 208 (659)
T ss_pred -------cCC------------cCCHHHHHHHHHHhCCCCCCCHHHHH---HHHHHHHHHcCChhhcCceeCCCCCCCcC
Confidence 110 00111000000000000000001111 1122223333332211 22344566
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccc-ccc-CCeEEEEeCceEE
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNT-IID-SDRVLVLDKGLVV 426 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-i~~-~d~i~~l~~G~i~ 426 (602)
||||||++|||||+.+|++|+|||||++||+.++..+.+.|+++. +++|||+++|+++. +.. +|++++|++|+++
T Consensus 209 --gGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 209 --GGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred --hhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence 699999999999999999999999999999999999999999875 57999999999984 656 9999999999999
Q ss_pred eecChhHHhh
Q psy3001 427 EFDSPSVLMK 436 (602)
Q Consensus 427 ~~g~~~~l~~ 436 (602)
..|+++++..
T Consensus 287 ~~G~~~~~~~ 296 (659)
T PLN03211 287 FFGKGSDAMA 296 (659)
T ss_pred EECCHHHHHH
Confidence 9999888753
No 341
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.97 E-value=3.3e-30 Score=249.34 Aligned_cols=185 Identities=16% Similarity=0.179 Sum_probs=130.2
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEE-ECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTII-IDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~-i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|. ++|..+. ++ +.
T Consensus 2 vl~~vs~~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~----------~~---~~---------- 57 (213)
T PRK15177 2 VLDKTDFVMGYH-EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP----------LG---AN---------- 57 (213)
T ss_pred eeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec----------cc---cc----------
Confidence 589999999998 99999999999999999999999999999997 7764321 11 11
Q ss_pred CceeEeeecccceeeeccccceeecccccccccc--c-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT--P-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
+.++. .. ++.+++.. . ......+... ...+ ..............+| +|||
T Consensus 58 -~~l~~------------~l------tv~enl~~~~~~~~~~~~~~~~---~~~~---~~~l~~~~~~~~~~lS--~G~~ 110 (213)
T PRK15177 58 -SFILP------------GL------TGEENARMMASLYGLDGDEFSH---FCYQ---LTQLEQCYTDRVSEYS--VTMK 110 (213)
T ss_pred -cccCC------------cC------cHHHHHHHHHHHcCCCHHHHHH---HHHH---HhChhHHhhchHhhcC--HHHH
Confidence 00000 00 00000000 0 0000000000 0001 1111111233334566 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
||++||||++.+|++++|||||+++|+.+...+.+.+.+..+++|+|++||+++.+.. ||++++|++|+++..++.++.
T Consensus 111 qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 111 THLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA 190 (213)
T ss_pred HHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999887654456789999999999987 999999999999998887766
Q ss_pred h
Q psy3001 435 M 435 (602)
Q Consensus 435 ~ 435 (602)
.
T Consensus 191 ~ 191 (213)
T PRK15177 191 T 191 (213)
T ss_pred H
Confidence 3
No 342
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=5.5e-30 Score=238.28 Aligned_cols=136 Identities=29% Similarity=0.362 Sum_probs=118.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++++ +++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.+ +++++|++
T Consensus 13 ~~~l~~~-~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q~~-------- 70 (177)
T cd03222 13 FFLLVEL-GVVKEG-EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQYI-------- 70 (177)
T ss_pred EEEEccC-cEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcccC--------
Confidence 3456664 788888 9999999999999999999999999999999999853 56666530
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
. +| +|||||
T Consensus 71 ------------------------------------~---------------------------------LS--gGq~qr 79 (177)
T cd03222 71 ------------------------------------D---------------------------------LS--GGELQR 79 (177)
T ss_pred ------------------------------------C---------------------------------CC--HHHHHH
Confidence 0 44 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cc-cEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AH-CTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~-~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
++|||||+.+|++++|||||++||+.+.+.+.+.+++.. ++ .|+|++||+++.+.. ||++++|+++-.+
T Consensus 80 v~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 80 VAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999999999999999999999999999999999998864 33 899999999999987 9999999987554
No 343
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.97 E-value=6.3e-30 Score=244.43 Aligned_cols=177 Identities=19% Similarity=0.266 Sum_probs=128.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++ +||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++|++|++...
T Consensus 15 ~l~~-vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~~~~~~~~------ 82 (195)
T PRK13541 15 NLFD-LSITFLPS-AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYIGHNLGLK------ 82 (195)
T ss_pred EEEE-EEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEeccCCcCCC------
Confidence 4555 99999998 999999999999999999999999999999999999876532 34588888863110
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+ ..++.+++.... .......+....++..+..+........+| +|||||+
T Consensus 83 ----~-------------------~~tv~~~l~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~~rl 132 (195)
T PRK13541 83 ----L-------------------EMTVFENLKFWS-----EIYNSAETLYAAIHYFKLHDLLDEKCYSLS--SGMQKIV 132 (195)
T ss_pred ----c-------------------cCCHHHHHHHHH-----HhcccHHHHHHHHHHcCCHhhhccChhhCC--HHHHHHH
Confidence 1 011111100000 000000111122223333333444556677 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeecccccccCCeE
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIIDSDRV 417 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~~d~i 417 (602)
+||||++++|++++|||||++||+.+.+.+.+.++.. ..++|+|++||+++.+..+|.+
T Consensus 133 ~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 133 AIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 9999999999999999999999999999999999754 3579999999999999988865
No 344
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.5e-29 Score=235.13 Aligned_cols=155 Identities=23% Similarity=0.278 Sum_probs=119.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+||||||||||++++. +++|++.+++... .. .++.+++++|
T Consensus 8 ~~~l~~isl~i~~G-~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~-~~----~~~~~~~~~q---------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLN-VLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP-KF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeecceEEEEcCC-CEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc-cc----ccccEEEEhH----------
Confidence 34799999999998 999999999999999999985 3799999876421 11 1122333322
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Q 356 (602)
.+.++.++... ........+| +||||
T Consensus 68 ---------------------------------------------------~~~l~~~~L~~~~~~~~~~~LS--gGq~q 94 (176)
T cd03238 68 ---------------------------------------------------LQFLIDVGLGYLTLGQKLSTLS--GGELQ 94 (176)
T ss_pred ---------------------------------------------------HHHHHHcCCCccccCCCcCcCC--HHHHH
Confidence 01112222222 1334455677 69999
Q ss_pred HHHHHHHHhhC--CCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceE
Q psy3001 357 LICLARALLRK--TKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLV 425 (602)
Q Consensus 357 rl~lAral~~~--p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i 425 (602)
|++||||++.+ |++++|||||++||+.+.+.+.+.+++.. .++|||++||+++.+..||++++|++|+.
T Consensus 95 rl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 99999999999 99999999999999999999999998865 47999999999998866999999976543
No 345
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.97 E-value=2.7e-30 Score=255.83 Aligned_cols=191 Identities=22% Similarity=0.310 Sum_probs=136.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEE-----------ECCeecCCCChHHHhh--cccee
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTII-----------IDGVDIRTLGLHTLRS--RLTII 265 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~-----------i~g~~~~~~~~~~~~~--~i~~v 265 (602)
..++|+++ ..+| ++++|+|+||||||||+++|+|+++|++|+|. ++|.++........+. .++++
T Consensus 15 ~~l~~i~~-i~~G-e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 15 FKLHRLPV-PREG-QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred hhhhcCCC-CCCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 46889984 6777 99999999999999999999999999999996 7788776543322222 35777
Q ss_pred cccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccC
Q psy3001 266 PQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFG 345 (602)
Q Consensus 266 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 345 (602)
+|.+... +. .+.+++... +... ....+..+.++.++.........
T Consensus 93 ~~~~~~~-------~~-------------------~~~~~i~~~--------l~~~-~~~~~~~~~l~~~gl~~~~~~~~ 137 (255)
T cd03236 93 PQYVDLI-------PK-------------------AVKGKVGEL--------LKKK-DERGKLDELVDQLELRHVLDRNI 137 (255)
T ss_pred cchhccC-------ch-------------------HHHHHHHHH--------hchh-HHHHHHHHHHHHcCCchhhcCCh
Confidence 7752210 00 011111110 0000 01112223333444444445555
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
..+| +|||||++||||++.+|++++|||||++||+.+...+.+.+++..+ ++|+|++||+++.+.. ||+|++|+ |
T Consensus 138 ~~LS--~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~ 214 (255)
T cd03236 138 DQLS--GGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-G 214 (255)
T ss_pred hhCC--HHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-C
Confidence 6677 6999999999999999999999999999999999999999988753 6999999999999987 99999995 5
Q ss_pred eEEeec
Q psy3001 424 LVVEFD 429 (602)
Q Consensus 424 ~i~~~g 429 (602)
++.+.|
T Consensus 215 ~~~~~~ 220 (255)
T cd03236 215 EPGAYG 220 (255)
T ss_pred CCCcce
Confidence 565433
No 346
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.96 E-value=2.1e-29 Score=232.34 Aligned_cols=143 Identities=36% Similarity=0.592 Sum_probs=126.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..+++++|.+.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.......+++.+++++|
T Consensus 13 ~~l~~~~~~i~~g-~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q----------- 80 (157)
T cd00267 13 TALDNVSLTLKAG-EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ----------- 80 (157)
T ss_pred eeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-----------
Confidence 4799999999998 9999999999999999999999999999999999988766544455555554441
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+| +||+||+
T Consensus 81 ---------------------------------------------------------------------lS--~G~~~r~ 89 (157)
T cd00267 81 ---------------------------------------------------------------------LS--GGQRQRV 89 (157)
T ss_pred ---------------------------------------------------------------------CC--HHHHHHH
Confidence 44 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
+||||++.+|++++|||||++||+.+...+.+.+++..+ ++|++++||+++.+.. ||+++++++|+
T Consensus 90 ~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 90 ALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999999988644 5899999999999998 79999999874
No 347
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.96 E-value=1.4e-29 Score=276.26 Aligned_cols=206 Identities=16% Similarity=0.197 Sum_probs=142.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-CCceEEECCeecCC-CChHHHhhccceecccchhhhhhc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-ADGTIIIDGVDIRT-LGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-~~G~I~i~g~~~~~-~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
..++|+||.+.+| ++++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. ......++.++|++|++...+...
T Consensus 274 ~il~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 352 (490)
T PRK10938 274 PILHNLSWQVNPG-EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVS 352 (490)
T ss_pred eEEeeceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccC
Confidence 4677777777777 99999999999999999999998876 79999999987632 233456788999999743111000
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~ 355 (602)
. . . ...... ..... ......... ....+..+.++.++... ........+| ||||
T Consensus 353 ~--~--------~-------~~~~~~--~~~~~--~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS--gGq~ 407 (490)
T PRK10938 353 T--S--------V-------RNVILS--GFFDS--IGIYQAVSD--RQQKLAQQWLDILGIDKRTADAPFHSLS--WGQQ 407 (490)
T ss_pred C--c--------H-------HHHHHh--ccccc--cccccCCCH--HHHHHHHHHHHHcCCchhhccCchhhCC--HHHH
Confidence 0 0 0 000000 00000 000000000 00111223333444443 4455556777 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-c-cEEEEeeeccccccc--CCeEEEEeCceEEeecC
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-H-CTVLTIAHRLNTIID--SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~l~~i~~--~d~i~~l~~G~i~~~g~ 430 (602)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ + .|||+|||+++.+.. ||++++|++|++++...
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 999999999999999999999999999999999999988743 4 579999999999974 79999999999987543
No 348
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=2.4e-29 Score=276.70 Aligned_cols=189 Identities=17% Similarity=0.228 Sum_probs=137.6
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|. +.++|++|++...+
T Consensus 334 ~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~------ 395 (530)
T PRK15064 334 LFKNLNLLLEAG-ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGYYAQDHAYDF------ 395 (530)
T ss_pred eecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEEEcccccccC------
Confidence 455666666666 999999999999999999999999999999999872 47999999742111
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+ . . .++.+.+....... ....+..+.++.++.. .........+| ||||||+
T Consensus 396 ---~-~-----------~------~t~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LS--gGq~qrv 447 (530)
T PRK15064 396 ---E-N-----------D------LTLFDWMSQWRQEG-----DDEQAVRGTLGRLLFSQDDIKKSVKVLS--GGEKGRM 447 (530)
T ss_pred ---C-C-----------C------CcHHHHHHHhccCC-----ccHHHHHHHHHHcCCChhHhcCcccccC--HHHHHHH
Confidence 0 0 0 00000000000000 0001112223333332 23445566777 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEE-eecChhHHhh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV-EFDSPSVLMK 436 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~-~~g~~~~l~~ 436 (602)
+|||||+.+|++|||||||++||+.+...+.+.+++. +.|||+|||+++++.. ||++++|++|+++ ..|++.+++.
T Consensus 448 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 9999999999999999999999999999999999876 3599999999999988 9999999999998 6677776654
No 349
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.96 E-value=2.3e-30 Score=286.09 Aligned_cols=121 Identities=39% Similarity=0.649 Sum_probs=116.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++|++|++||+|||||+||||||||+|+|+|+|+|++|+|.+||.|++.++++.+|++|||||||+++|+|||+|||.
T Consensus 489 L~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~ 568 (709)
T COG2274 489 LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIA 568 (709)
T ss_pred hhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHh
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-CcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGE-SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~-~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.... .++|++++|++.+++++|+.++|.||+|+|||+|+||
T Consensus 569 l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~L 610 (709)
T COG2274 569 LGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANL 610 (709)
T ss_pred cCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCC
Confidence 6654 5789999999999999999999999999999999997
No 350
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.4e-29 Score=225.83 Aligned_cols=217 Identities=20% Similarity=0.269 Sum_probs=163.8
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC-eecCCCChHHH-hhccceecccchhhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG-VDIRTLGLHTL-RSRLTIIPQVLATIF 273 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g-~~~~~~~~~~~-~~~i~~v~Q~~~~~~ 273 (602)
.+-..++|+||++.+| |.-+|+|||||||||++-+|+|-.+|+.|+++++| .++..++...+ |..||-=+|-|.
T Consensus 16 ~GF~Aln~ls~~v~~G-elr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~Pt--- 91 (249)
T COG4674 16 GGFKALNDLSFSVDPG-ELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPT--- 91 (249)
T ss_pred cceeeeeeeEEEecCC-eEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCe---
Confidence 3567899999999999 99999999999999999999999999999999999 89999987766 456888888632
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHH--HHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF--YVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
.|- +-+...|-++..+.--.....+... .....+..+.+...++.+........||
T Consensus 92 --------Vfe------------~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LS-- 149 (249)
T COG4674 92 --------VFE------------NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLS-- 149 (249)
T ss_pred --------ehh------------hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhc--
Confidence 221 2222222221100000000011000 1122234444445555555555555677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
-||||++.|+..+.++|++|+||||++++..+......+.++.+...++|++|.||+.+++. |++|.||+.|.+...|+
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGs 229 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeeccc
Confidence 59999999999999999999999999999777777788888888888999999999999998 99999999999999999
Q ss_pred hhHHhhcc
Q psy3001 431 PSVLMKNK 438 (602)
Q Consensus 431 ~~~l~~~~ 438 (602)
.+++-.++
T Consensus 230 ld~v~~dp 237 (249)
T COG4674 230 LDEVQNDP 237 (249)
T ss_pred HHHhhcCc
Confidence 99886553
No 351
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=2.5e-29 Score=237.32 Aligned_cols=205 Identities=24% Similarity=0.281 Sum_probs=149.5
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++|+||.+++| ++++++|+|||||||++|+|+|++.|++|.|.++|.+... +..++-+++++|.-. ...
T Consensus 39 AVqdisf~IP~G-~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gq--------k~q 108 (325)
T COG4586 39 AVQDISFEIPKG-EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQ--------KLQ 108 (325)
T ss_pred hhheeeeecCCC-cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhh--------hhe
Confidence 789999999999 9999999999999999999999999999999999986654 233344455554421 000
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLIC 359 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~ 359 (602)
.++.. + ...++..+..+.+ .....|........+ .+...+.+...-..+|. |||.|+.
T Consensus 109 l~Wdl---p-------~~ds~~v~~~Iy~-------Ipd~~F~~r~~~l~e---iLdl~~~lk~~vr~LSl--GqRmrae 166 (325)
T COG4586 109 LWWDL---P-------ALDSLEVLKLIYE-------IPDDEFAERLDFLTE---ILDLEGFLKWPVRKLSL--GQRMRAE 166 (325)
T ss_pred eeeec---h-------hhhhHHHHHHHHh-------CCHHHHHHHHHHHHH---Hhcchhhhhhhhhhccc--hHHHHHH
Confidence 11100 0 0111111111111 111222222222222 23334444555567775 9999999
Q ss_pred HHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhh
Q psy3001 360 LARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 360 lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
||.||+++|+||+|||||-+||..++..+.+.+++.. .++||++.||.++-+.. ||||+.++.|+++..|+.+++.+
T Consensus 167 LaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 167 LAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred HHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 9999999999999999999999999999999998875 36999999999999998 99999999999999999888754
No 352
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.96 E-value=6.8e-29 Score=276.59 Aligned_cols=207 Identities=19% Similarity=0.263 Sum_probs=150.6
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCeecCCCChHHHhhccceecccchhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~ 273 (602)
.+..++|+|+.+.+| |+++|+|+||||||||+++|+|..+|. +|+|.+||.++. ...+++.++|++|++
T Consensus 37 ~~~iL~~vs~~i~~G-e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~---- 108 (617)
T TIGR00955 37 RKHLLKNVSGVAKPG-ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDD---- 108 (617)
T ss_pred ccccccCCEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeecccc----
Confidence 355899999999999 999999999999999999999999885 799999999875 356788999999973
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC----cccc--cCCc
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP----IYSH--FGET 347 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~--~~~~ 347 (602)
.++. ..+...+-........+...... ....+..+.++.+++.+ .++. ....
T Consensus 109 -------~~~~------------~lTV~e~l~f~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~ 166 (617)
T TIGR00955 109 -------LFIP------------TLTVREHLMFQAHLRMPRRVTKK---EKRERVDEVLQALGLRKCANTRIGVPGRVKG 166 (617)
T ss_pred -------ccCc------------cCcHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCchhcCcCccCCCCCCCC
Confidence 2220 01111110000000000000001 11112223333333322 2222 1234
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccc-cccc-CCeEEEEeCce
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLN-TIID-SDRVLVLDKGL 424 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~-~i~~-~d~i~~l~~G~ 424 (602)
+| ||||||++|||||+.+|++++|||||++||+.+...+.+.+++..+ ++|+|+++|+++ .+.+ +|++++|++|+
T Consensus 167 LS--gGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~ 244 (617)
T TIGR00955 167 LS--GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGR 244 (617)
T ss_pred cC--cchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCe
Confidence 66 6999999999999999999999999999999999999999998754 799999999996 5655 99999999999
Q ss_pred EEeecChhHHh
Q psy3001 425 VVEFDSPSVLM 435 (602)
Q Consensus 425 i~~~g~~~~l~ 435 (602)
++..|+++++.
T Consensus 245 ~v~~G~~~~~~ 255 (617)
T TIGR00955 245 VAYLGSPDQAV 255 (617)
T ss_pred EEEECCHHHHH
Confidence 99999988874
No 353
>KOG0062|consensus
Probab=99.96 E-value=1.1e-29 Score=258.53 Aligned_cols=228 Identities=22% Similarity=0.252 Sum_probs=151.5
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
.++| ||.|-|++||||+..+||+|+|||||++||..+..|+...|..+. .|+|+||||..++.. |.-|+.+++-+
T Consensus 197 ~slS--GGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 197 KSLS--GGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred cccC--cchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhh
Confidence 3455 699999999999999999999999999999999999999998764 799999999999998 99999999887
Q ss_pred EEee-cChhHHhhcchhHHHHHHHhh-------------hhhH--HHHHHHhhhhhHH------------------HHHH
Q psy3001 425 VVEF-DSPSVLMKNKASIFYSMAKDA-------------GLAW--LAVRLETVGNLIT------------------FSAA 470 (602)
Q Consensus 425 i~~~-g~~~~l~~~~~~~~~~~~~~~-------------~~~~--~~~~~~~~~~~~~------------------~~~~ 470 (602)
+-.+ |+.+++.+...+......+.. ..++ .+.+.......+. +..+
T Consensus 273 L~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP 352 (582)
T KOG0062|consen 273 LDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFP 352 (582)
T ss_pred hhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecC
Confidence 7543 666666544222111110000 0000 0000000000000 0000
Q ss_pred H-HHHHhcccccccceeeEEecc---------------eeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC
Q psy3001 471 L-LAVLSKETLNAGLVGLSVSYA---------------MQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG 534 (602)
Q Consensus 471 ~-~~~~~~~~~~~~~~~l~i~~G---------------e~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~ 534 (602)
. ..+.+...+.+.+++|.-.++ +++++||+||+||||++|++.|-+.|.+|.+-+.+
T Consensus 353 ~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~------- 425 (582)
T KOG0062|consen 353 TEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP------- 425 (582)
T ss_pred CCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-------
Confidence 0 001112222233344443333 46899999999999999999999999999998877
Q ss_pred hhhhhccceEecCCcccc-ccchh--ccc-CCCCCCcHHHHHHHHHHcCCCccccccc
Q psy3001 535 LHTLRSRLTIIPQDPVLF-SGTLR--LNL-DPVGESSDEAIWKALELAHLNTFVSNLP 588 (602)
Q Consensus 535 ~~~lr~~i~~V~Qdp~lf-~~Tv~--~nl-~~~~~~~~~~i~~al~~~~l~~~~~~~~ 588 (602)
|.+|+|-.|-..-| +-.|. +-+ .-.+..+++++++.|..+||..-+..++
T Consensus 426 ----r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s 479 (582)
T KOG0062|consen 426 ----RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS 479 (582)
T ss_pred ----cceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc
Confidence 77999999977432 22221 101 1223348999999999999987655444
No 354
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.96 E-value=1.1e-28 Score=275.38 Aligned_cols=187 Identities=18% Similarity=0.249 Sum_probs=133.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|+|+||.+.+| +++||+||||||||||+++|+|+++|++|+|.+++. ..++|++|++...
T Consensus 326 ~il~~isl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy~~Q~~~~~------ 387 (638)
T PRK10636 326 IILDSIKLNLVPG-SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGYFAQHQLEF------ 387 (638)
T ss_pred eeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEEecCcchhh------
Confidence 3455555555556 999999999999999999999999999999999741 2689999963100
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qr 357 (602)
+. ....+...+.. ... . ....+....+..++..+ ........|| ||||||
T Consensus 388 ---l~------------------~~~~~~~~~~~-~~~--~---~~~~~~~~~L~~~~l~~~~~~~~~~~LS--gGekqR 438 (638)
T PRK10636 388 ---LR------------------ADESPLQHLAR-LAP--Q---ELEQKLRDYLGGFGFQGDKVTEETRRFS--GGEKAR 438 (638)
T ss_pred ---CC------------------ccchHHHHHHH-hCc--h---hhHHHHHHHHHHcCCChhHhcCchhhCC--HHHHHH
Confidence 00 00000000000 000 0 00111122233333321 2334455677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEE-eecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV-EFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~-~~g~~~~l 434 (602)
|+|||||+.+|++|||||||++||+.+...+.+.|+.+ . .|||+|||+++++.. ||+|++|++|+++ ..|+++++
T Consensus 439 l~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 439 LVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 99999999999999999999999999999999999887 3 499999999999988 9999999999997 56776665
No 355
>PLN03073 ABC transporter F family; Provisional
Probab=99.96 E-value=3.2e-28 Score=272.41 Aligned_cols=186 Identities=19% Similarity=0.262 Sum_probs=132.2
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.+++ +..++|++|++...+
T Consensus 524 il~~vsl~i~~G-e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~igyv~Q~~~~~l------ 585 (718)
T PLN03073 524 LFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMAVFSQHHVDGL------ 585 (718)
T ss_pred eEeccEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEEEEeccccccC------
Confidence 455555555555 89999999999999999999999999999999875 246899999731100
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl 358 (602)
+...+.... . ........ ..+....+..++..+ ........|| ||||||+
T Consensus 586 -------------------~~~~~~~~~-~--~~~~~~~~-----~~~i~~~L~~~gl~~~~~~~~~~~LS--gGqkqRv 636 (718)
T PLN03073 586 -------------------DLSSNPLLY-M--MRCFPGVP-----EQKLRAHLGSFGVTGNLALQPMYTLS--GGQKSRV 636 (718)
T ss_pred -------------------CcchhHHHH-H--HHhcCCCC-----HHHHHHHHHHCCCChHHhcCCccccC--HHHHHHH
Confidence 000000000 0 00000000 011122233333332 2344556677 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEE-eecChhHH
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV-EFDSPSVL 434 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~-~~g~~~~l 434 (602)
+|||||+.+|++|||||||++||+.+...+.+.+... + .|||+|||+++++.. ||++++|++|+++ ..|+++++
T Consensus 637 aLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 637 AFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999999999998888765 3 499999999999988 9999999999998 45665543
No 356
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.96 E-value=1.4e-28 Score=224.53 Aligned_cols=208 Identities=26% Similarity=0.340 Sum_probs=150.4
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
.+..++++|+.++++ +++-|+|.||||||||+++|+|-+.|++|+|.+||+|+..++.......++-|+|+|..-.
T Consensus 18 ek~~l~~~sL~I~~g-~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt--- 93 (263)
T COG1101 18 EKRALNGLSLEIAEG-DFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT--- 93 (263)
T ss_pred HHHHHhcCceeecCC-ceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCC---
Confidence 356799999999998 9999999999999999999999999999999999999999999999999999999964311
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccc--ccccchhH-HHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII--TPFCSNLQ-RFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
.| .-++.+|-.+.+.-- ......+. .........+..+ .++..+..+..-.-+| ||
T Consensus 94 --~~----------------~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l-~lgLenrL~~~iglLS--GG 152 (263)
T COG1101 94 --AP----------------ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARL-GLGLENRLSDRIGLLS--GG 152 (263)
T ss_pred --cc----------------cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhc-ccchhhhhcChhhhcc--ch
Confidence 01 111111111111000 00000000 0111111111111 2223333344444566 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||-++++.|-++.|+||+|||-|++|||.+...+.+.-.+.- .+.|.++|||.++...+ -+|.++|++|+|+-.-
T Consensus 153 QRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 153 QRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999999999999999988766642 35799999999999877 7999999999998653
No 357
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=4.1e-28 Score=213.59 Aligned_cols=221 Identities=19% Similarity=0.282 Sum_probs=158.5
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC-----eecCCCChHHH----hhccceecc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG-----VDIRTLGLHTL----RSRLTIIPQ 267 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g-----~~~~~~~~~~~----~~~i~~v~Q 267 (602)
+.+-++||||...+| |+.+|||+||||||||+++|++-+.|+.|+|.+.- .++-.++..+. |..-|+|.|
T Consensus 18 ~~~gc~~vsF~l~PG-eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQ 96 (258)
T COG4107 18 PGKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred CCcCccccceeecCC-cEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeec
Confidence 345789999999998 99999999999999999999999999999999854 23334443333 445688999
Q ss_pred cchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCC
Q psy3001 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGE 346 (602)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 346 (602)
+|..-.- .......++-+-.+.--.-..-...+...+.++ .+... .-....+.
T Consensus 97 nP~DGLR-----------------------m~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~---~VEI~~~RiDD~Pr 150 (258)
T COG4107 97 NPRDGLR-----------------------MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLE---EVEIDLDRIDDLPR 150 (258)
T ss_pred Cccccce-----------------------eeeccCCccchhHHhhhhhhhhhHHHHHHHHHH---hcccCcccccCccc
Confidence 8642110 000011112110000000000011122222222 22221 12455566
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
+.| ||++||+.|||-|...|+++++||||-+||......+.+.++.+.. +.++++|||++..+.- +||..||.+|
T Consensus 151 tFS--GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g 228 (258)
T COG4107 151 TFS--GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQG 228 (258)
T ss_pred ccc--hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCC
Confidence 777 5999999999999999999999999999999999999999998753 6899999999999987 9999999999
Q ss_pred eEEeecChhHHhhcchhHHHHHH
Q psy3001 424 LVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 424 ~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
++++.|-.+.++.++...|..+.
T Consensus 229 ~vve~GLTDrvLDDP~hPYTQLL 251 (258)
T COG4107 229 QVVESGLTDRVLDDPHHPYTQLL 251 (258)
T ss_pred CEeccccccccccCCCCchHHHH
Confidence 99999999999888777777654
No 358
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.96 E-value=4.2e-28 Score=285.59 Aligned_cols=188 Identities=20% Similarity=0.208 Sum_probs=128.4
Q ss_pred HHHhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHh---hCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEe
Q psy3001 330 KRLESVSRSPI-YSHFGETVTGNVGQRQLICLARALL---RKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTI 404 (602)
Q Consensus 330 ~~l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~---~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~i 404 (602)
+.++.++.... ......++| |||+||++|||||+ .+|++|||||||++||+.+.+.+.+.|+++. +|.|||+|
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLS--GGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiI 868 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLS--GGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVII 868 (1809)
T ss_pred HHHHHcCCcchhhcCccccCC--HHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34444555443 455566777 69999999999998 5999999999999999999999999998875 47899999
Q ss_pred eecccccccCCeEEEEe------CceEEeecChhHHhhcch--hHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHh
Q psy3001 405 AHRLNTIIDSDRVLVLD------KGLVVEFDSPSVLMKNKA--SIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLS 476 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~------~G~i~~~g~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (602)
+|+++.+..||++++|. +|+++..|+++++..... ..+....-.....+... ..+.... +......+..
T Consensus 869 sHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~~~s~t~~~l~~~l~~~~~~~~~-~~~~~~~--l~~~~i~i~~ 945 (1809)
T PRK00635 869 EHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIHLHTPTAKALRPYLSSPQELPYL-PDPSPKP--PVPADITIKN 945 (1809)
T ss_pred eCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHhccCchHHHHHHHhhcccccccc-ccccccc--cccceEEEec
Confidence 99999995599999996 789999999998875321 11110000000000000 0000000 0000000000
Q ss_pred cccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEEC
Q psy3001 477 KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 526 (602)
Q Consensus 477 ~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~ 526 (602)
...-.+.+++|++++|++++|+|+||||||||+..+ +++ .|++.+.
T Consensus 946 ~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~ 991 (1809)
T PRK00635 946 AYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYA 991 (1809)
T ss_pred cccccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeee
Confidence 111235578999999999999999999999988877 443 8888765
No 359
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.95 E-value=3.9e-28 Score=268.06 Aligned_cols=192 Identities=20% Similarity=0.222 Sum_probs=135.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.+++ + ..++|+||++...+
T Consensus 338 ~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~----- 400 (556)
T PRK11819 338 LLIDDLSFSLPPG-GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALD----- 400 (556)
T ss_pred eeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEEEEeCchhhcC-----
Confidence 4566677777666 99999999999999999999999999999999854 2 15899999731110
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Q 356 (602)
+ . .++.+++.... .......... ....++.++... ........+| |||||
T Consensus 401 -~----------------~------~tv~e~l~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~~LS--gG~~q 452 (556)
T PRK11819 401 -P----------------N------KTVWEEISGGLDIIKVGNREIP---SRAYVGRFNFKGGDQQKKVGVLS--GGERN 452 (556)
T ss_pred -C----------------C------CCHHHHHHhhcccccccccHHH---HHHHHHhCCCChhHhcCchhhCC--HHHHH
Confidence 0 0 00100000000 0000000000 111233333322 2344456677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC-ceEEe-ecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK-GLVVE-FDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~-G~i~~-~g~~~~ 433 (602)
|++|||||+.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. ||++++|++ |++.. .|+.++
T Consensus 453 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 453 RLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 9999999999999999999999999999999999998863 489999999999988 999999996 78764 566665
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+.+.
T Consensus 531 ~~~~ 534 (556)
T PRK11819 531 YEED 534 (556)
T ss_pred HHHH
Confidence 5443
No 360
>PRK13409 putative ATPase RIL; Provisional
Probab=99.95 E-value=1.9e-28 Score=269.48 Aligned_cols=179 Identities=22% Similarity=0.347 Sum_probs=131.6
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
|+++||++.+| |+++|+|+||||||||+++|+|+++|++|+|.++ ..++|+||++...
T Consensus 355 l~~~s~~i~~G-eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~-------- 412 (590)
T PRK13409 355 LEVEGGEIYEG-EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPD-------- 412 (590)
T ss_pred EEecceEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCC--------
Confidence 55666666666 9999999999999999999999999999999885 1589999974211
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICL 360 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~l 360 (602)
++.++.+++.... .... ......+.++.++...........|| ||||||++|
T Consensus 413 ---------------------~~~tv~e~l~~~~-~~~~----~~~~~~~~L~~l~l~~~~~~~~~~LS--GGe~QRvai 464 (590)
T PRK13409 413 ---------------------YDGTVEDLLRSIT-DDLG----SSYYKSEIIKPLQLERLLDKNVKDLS--GGELQRVAI 464 (590)
T ss_pred ---------------------CCCcHHHHHHHHh-hhcC----hHHHHHHHHHHCCCHHHHhCCcccCC--HHHHHHHHH
Confidence 0111111110000 0000 00011222334444444555666778 599999999
Q ss_pred HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 361 Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++++.. |||+++|++ ++...|.
T Consensus 465 AraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 465 AACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999999999999998743 6899999999999987 999999965 7766665
No 361
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.95 E-value=4.8e-28 Score=267.32 Aligned_cols=189 Identities=22% Similarity=0.252 Sum_probs=132.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.+++ + ..++|++|++...+
T Consensus 336 ~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~----- 398 (552)
T TIGR03719 336 LLIDDLSFKLPPG-GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALD----- 398 (552)
T ss_pred eeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEEEEeCCccccC-----
Confidence 4566666666666 99999999999999999999999999999999854 2 15899999732111
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Q 356 (602)
+ . .++.+.+..... ........ +....++.++... ........+| |||||
T Consensus 399 -~----------------~------~tv~e~l~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~LS--gGe~q 450 (552)
T TIGR03719 399 -P----------------N------KTVWEEISGGLDIIQLGKREV---PSRAYVGRFNFKGSDQQKKVGQLS--GGERN 450 (552)
T ss_pred -C----------------C------CcHHHHHHhhccccccCcchH---HHHHHHHhCCCChhHhcCchhhCC--HHHHH
Confidence 0 0 001000000000 00000000 1112223333322 2344456677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC-ceEEee-cChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK-GLVVEF-DSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~-G~i~~~-g~~~~ 433 (602)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. .|||+|||+++.+.. ||++++|++ |++..+ |+.++
T Consensus 451 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 451 RVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 9999999999999999999999999999999999999873 489999999999988 999999997 587644 55544
Q ss_pred H
Q psy3001 434 L 434 (602)
Q Consensus 434 l 434 (602)
+
T Consensus 529 ~ 529 (552)
T TIGR03719 529 Y 529 (552)
T ss_pred H
Confidence 4
No 362
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=9.7e-28 Score=222.12 Aligned_cols=209 Identities=23% Similarity=0.270 Sum_probs=152.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc--cCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~--~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~ 275 (602)
-.+++||+++.+| |+++|.||||||||||.++|+|. |++++|+|.++|+|+.++++.+. |..|.+.+|.|.-+-
T Consensus 18 eILkgvnL~v~~G-EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~-- 94 (251)
T COG0396 18 EILKGVNLTVKEG-EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP-- 94 (251)
T ss_pred hhhcCcceeEcCC-cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCC--
Confidence 4689999999998 99999999999999999999997 57899999999999999999876 457888888753210
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
-.- ...|+... .| ... ........+.....+.. +.+...+.+.+...+...|||||
T Consensus 95 -----GV~--------~~~fLr~a--~n-~~~-----~~~~~~~~~~~~~~e~~---~~l~~~~~~l~R~vN~GFSGGEk 150 (251)
T COG0396 95 -----GVT--------NSDFLRAA--MN-ARR-----GARGILPEFIKELKEKA---ELLGLDEEFLERYVNEGFSGGEK 150 (251)
T ss_pred -----Cee--------HHHHHHHH--HH-hhh-----ccccccHHHHHHHHHHH---HHcCCCHHHhhcccCCCcCcchH
Confidence 000 00000000 00 000 00000122222222222 23444443333333333347999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc--CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID--SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~--~d~i~~l~~G~i~~~g~~~ 432 (602)
.|..|+.+++.+|++.|||||-|+||.++-+.+.+.++.++ .+.++++|||.-..+.. .|++.+|-+|+|+..|.+
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-
Confidence 99999999999999999999999999999999999998875 47999999999888876 599999999999999998
Q ss_pred HHh
Q psy3001 433 VLM 435 (602)
Q Consensus 433 ~l~ 435 (602)
++.
T Consensus 230 el~ 232 (251)
T COG0396 230 ELA 232 (251)
T ss_pred HHH
Confidence 554
No 363
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.95 E-value=4e-28 Score=271.59 Aligned_cols=189 Identities=21% Similarity=0.305 Sum_probs=131.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.+ |.++ .++|++|++...+
T Consensus 333 ~il~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y~~q~~~~l~----- 395 (635)
T PRK11147 333 QLVKDFSAQVQRG-DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAYFDQHRAELD----- 395 (635)
T ss_pred EEEcCcEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEEEeCcccccC-----
Confidence 3455666666566 899999999999999999999999999999998 4322 5899999631110
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~Q 356 (602)
+ +.++.+++..... ...... ..+....+..++.. .........|| |||||
T Consensus 396 -~----------------------~~tv~e~l~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LS--gGekq 447 (635)
T PRK11147 396 -P----------------------EKTVMDNLAEGKQEVMVNGR---PRHVLGYLQDFLFHPKRAMTPVKALS--GGERN 447 (635)
T ss_pred -C----------------------CCCHHHHHHhhcccccccch---HHHHHHHHHhcCCCHHHHhChhhhCC--HHHHH
Confidence 0 0011111000000 000000 01112222233222 12233445677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe-CceEEee-cChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD-KGLVVEF-DSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~-~G~i~~~-g~~~~ 433 (602)
|++|||||+.+|++|||||||++||+.+...+.+.++.+ +.|||+|||+++++.. ||++++++ +|++..+ |+.++
T Consensus 448 Rl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 448 RLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999999999999999999999999999999999876 4599999999999987 99999998 8999875 44444
Q ss_pred H
Q psy3001 434 L 434 (602)
Q Consensus 434 l 434 (602)
+
T Consensus 526 y 526 (635)
T PRK11147 526 A 526 (635)
T ss_pred H
Confidence 3
No 364
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.95 E-value=4.9e-28 Score=289.41 Aligned_cols=202 Identities=21% Similarity=0.275 Sum_probs=141.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC---CCCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE---PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~---~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|||+.+.+| +++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+++.++||+|++....
T Consensus 777 ~iL~~vs~~i~~G-e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~-- 849 (1394)
T TIGR00956 777 VILNNVDGWVKPG-TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLP-- 849 (1394)
T ss_pred EeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCC--
Confidence 4566666666666 8999999999999999999999998 78899999999874 246889999999732110
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC----cccccCCcCCCC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP----IYSHFGETVTGN 351 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~lsgs 351 (602)
..+.+.+-........+......+......+.++ .+++.+ .++..+..+|
T Consensus 850 ---------------------~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~---~l~L~~~~d~~v~~~~~~LS-- 903 (1394)
T TIGR00956 850 ---------------------TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIK---LLEMESYADAVVGVPGEGLN-- 903 (1394)
T ss_pred ---------------------CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH---HcCChhhCCCeeCCCCCCCC--
Confidence 1111111000000000000000111111222222 333322 2333334667
Q ss_pred hhhHHHHHHHHHHhhCCC-eEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeeccccc--ccCCeEEEEeCc-eEE
Q psy3001 352 VGQRQLICLARALLRKTK-ILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTI--IDSDRVLVLDKG-LVV 426 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~-iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i--~~~d~i~~l~~G-~i~ 426 (602)
||||||++|||||+.+|+ +|+|||||++||+.++..+.+.|+++ .+|+|||+++|+++.. ..+|++++|++| +++
T Consensus 904 gGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv 983 (1394)
T TIGR00956 904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983 (1394)
T ss_pred HHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE
Confidence 699999999999999997 99999999999999999999999987 4579999999999974 349999999997 999
Q ss_pred eecChhH
Q psy3001 427 EFDSPSV 433 (602)
Q Consensus 427 ~~g~~~~ 433 (602)
..|++.+
T Consensus 984 ~~G~~~~ 990 (1394)
T TIGR00956 984 YFGDLGE 990 (1394)
T ss_pred EECCccc
Confidence 9998643
No 365
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.95 E-value=2.4e-28 Score=244.87 Aligned_cols=203 Identities=20% Similarity=0.261 Sum_probs=128.1
Q ss_pred hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeecccccc
Q psy3001 334 SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTII 412 (602)
Q Consensus 334 ~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~ 412 (602)
.+.+..+....-..|| |||-||+|||.|++++++++++|||||.||...+-...+.++++.+ +++||+|.||+..+.
T Consensus 200 ~l~L~nvl~r~v~~LS--GGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD 277 (591)
T COG1245 200 RLGLENVLDRDVSELS--GGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLD 277 (591)
T ss_pred HhcchhhhhhhhhhcC--chHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHH
Confidence 4444455555566777 5999999999999999999999999999999999999999999876 699999999999998
Q ss_pred c-CCeEEEEeCceEEeecC---hhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhhhHHHHHH------H-HHHHhccccc
Q psy3001 413 D-SDRVLVLDKGLVVEFDS---PSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAA------L-LAVLSKETLN 481 (602)
Q Consensus 413 ~-~d~i~~l~~G~i~~~g~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~ 481 (602)
. +|-|.++-. +=-.+|- +......-+..........+.++.+ ..+.|... . ....+-..+.
T Consensus 278 ~lsD~vhI~YG-~pg~YGvvs~p~svr~gIN~yL~Gyl~~EN~R~R~-------~~I~F~~~~~~~~~~~~~lv~y~~~~ 349 (591)
T COG1245 278 YLSDFVHILYG-EPGVYGVVSKPKSVRVGINEYLKGYLPEENVRFRP-------EEIEFEEKPPRDDKARDTLVEYPDLK 349 (591)
T ss_pred HhhheeEEEec-CCccceEeccchHHHHHHHHHHhccCchhcccccc-------cceeeeccCcccccccceeeecchhe
Confidence 8 898887752 1111111 1111000000000000111111100 00000000 0 0000000011
Q ss_pred --ccceee-----EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc-cccc
Q psy3001 482 --AGLVGL-----SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP-VLFS 553 (602)
Q Consensus 482 --~~~~~l-----~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp-~lf~ 553 (602)
.+...+ +++.||++|++||||-||||++++|+|.++|++|. ..+ -+++|=||-. --|+
T Consensus 350 k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~ 415 (591)
T COG1245 350 KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYD 415 (591)
T ss_pred eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCC
Confidence 112233 35668899999999999999999999999999998 111 2588888844 2378
Q ss_pred cchhccc
Q psy3001 554 GTLRLNL 560 (602)
Q Consensus 554 ~Tv~~nl 560 (602)
+||++-+
T Consensus 416 gtV~~~l 422 (591)
T COG1245 416 GTVEDLL 422 (591)
T ss_pred CcHHHHH
Confidence 8887654
No 366
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.95 E-value=2.6e-27 Score=222.53 Aligned_cols=195 Identities=21% Similarity=0.252 Sum_probs=137.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||+..+| |.+||||+||||||||+|+|+|.++|++|+|.++|.-..-+. -..|+-|+-
T Consensus 40 ~~aL~disf~i~~G-e~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~-----lg~Gf~pel--------- 104 (249)
T COG1134 40 FWALKDISFEIYKG-ERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIE-----LGAGFDPEL--------- 104 (249)
T ss_pred EEEecCceEEEeCC-CEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhh-----cccCCCccc---------
Confidence 46899999999998 999999999999999999999999999999999995321111 112222221
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+-+.|-.+...+..-. .++.....++..+ +.. +.+.....-.+.| .|++-|
T Consensus 105 ---------------------TGreNi~l~~~~~G~~---~~ei~~~~~eIie-FaE--LG~fi~~PvktYS--SGM~aR 155 (249)
T COG1134 105 ---------------------TGRENIYLRGLILGLT---RKEIDEKVDEIIE-FAE--LGDFIDQPVKTYS--SGMYAR 155 (249)
T ss_pred ---------------------chHHHHHHHHHHhCcc---HHHHHHHHHHHHH-HHH--HHHHhhCchhhcc--HHHHHH
Confidence 0011100011000000 0011111111111 111 1111222222344 599999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
++.|-|...+|+|||+||..+.-|+.=.+.=.+.++++ .+++|+|+|||++..+.+ |||+++|++|++...|+++++.
T Consensus 156 LaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 156 LAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred HHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 99999999999999999999999998887777777776 567999999999999998 9999999999999999999886
Q ss_pred h
Q psy3001 436 K 436 (602)
Q Consensus 436 ~ 436 (602)
+
T Consensus 236 ~ 236 (249)
T COG1134 236 P 236 (249)
T ss_pred H
Confidence 5
No 367
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.94 E-value=3e-26 Score=197.12 Aligned_cols=190 Identities=23% Similarity=0.345 Sum_probs=139.0
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCeecCCCChHHHhhccceecccchhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~ 272 (602)
.+.-.+.|+||++.+| |++-|.||||||||||+.-+.|.+.++ +|++.++++++..++.. ++++|+++|+
T Consensus 13 ~g~cLLa~~n~Tia~G-eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qRq~GiLFQD---- 85 (213)
T COG4136 13 PGSCLLANVNFTIAKG-EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQIGILFQD---- 85 (213)
T ss_pred CCceEEEeeeEEecCC-cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hhheeeeecc----
Confidence 3567899999999998 999999999999999999999999885 89999999999877654 5789999998
Q ss_pred hhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+++|...-. -.++.+ .....++- .++.......++..++.......++++||
T Consensus 86 -------~lLFphlsV--------g~Nl~f----------Alp~~~KG-~aRr~~a~aAL~~~gL~g~f~~dP~tlSG-- 137 (213)
T COG4136 86 -------ALLFPHLSV--------GQNLLF----------ALPATLKG-NARRNAANAALERSGLDGAFHQDPATLSG-- 137 (213)
T ss_pred -------ccccccccc--------ccceEE----------ecCccccc-HHHHhhHHHHHHHhccchhhhcChhhcCc--
Confidence 555421000 001111 01111110 11222223344466667777888889994
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh--ccccEEEEeeecccccccCCeEEEE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE--FAHCTVLTIAHRLNTIIDSDRVLVL 420 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~i~~~d~i~~l 420 (602)
|||-||++-|+|+..|+.++||||+|.||..-+..+.+..... ..+..+|.||||...+..-.||+.+
T Consensus 138 GQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 138 GQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred chHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999999999986665555544332 2478899999999988755555544
No 368
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.94 E-value=1.3e-27 Score=263.45 Aligned_cols=120 Identities=35% Similarity=0.614 Sum_probs=115.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||||+||||||||+++|+|+++|++|+|.+||+|++++ .+++|++|+||||||++|++||++||.
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~ 429 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLR 429 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHh
Confidence 4579999999999999999999999999999999999999999999999999 999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++|++++|++.+++++++.++|+||||.|||+|.||
T Consensus 430 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 471 (529)
T TIGR02868 430 LGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARL 471 (529)
T ss_pred ccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcC
Confidence 75 457999999999999999999999999999999999987
No 369
>PLN03140 ABC transporter G family member; Provisional
Probab=99.94 E-value=1.3e-26 Score=276.30 Aligned_cols=200 Identities=21% Similarity=0.257 Sum_probs=139.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC--CCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~--~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
..++|+|+.+.+| +++||+|+||||||||+++|+|..++ .+|+|.++|.+.. ....++.++|++|++.
T Consensus 894 ~iL~~vs~~i~~G-el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~---~~~~~~~igyv~Q~d~------ 963 (1470)
T PLN03140 894 QLLREVTGAFRPG-VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK---QETFARISGYCEQNDI------ 963 (1470)
T ss_pred eEeeCcEEEEECC-eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC---hHHhhhheEEEccccc------
Confidence 4677777777777 89999999999999999999999874 7899999998764 2446778999999732
Q ss_pred cCCceeEeeecccceeeeccccceeeccccc--ccccccccchhHHHHHHHHHHHHHHhhcccCCccccc-----CCcCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVK--PLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHF-----GETVT 349 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~ls 349 (602)
++. ..+.. +.+. .....+......+.. ....+.++.+++.+..... ...+|
T Consensus 964 -----~~~------------~lTV~--E~L~~~a~lr~~~~~~~~~~~---~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 964 -----HSP------------QVTVR--ESLIYSAFLRLPKEVSKEEKM---MFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred -----cCC------------CCcHH--HHHHHHHHhCCCCCCCHHHHH---HHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 110 00000 1110 000000000001111 1122223333333222211 13566
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccc-ccc-CCeEEEEeC-ceE
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNT-IID-SDRVLVLDK-GLV 425 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-i~~-~d~i~~l~~-G~i 425 (602)
||||||++|||+|+.+|++|+|||||++||+.++..+.+.|+++. +|+|||+++|+++. +.. +|++++|++ |++
T Consensus 1022 --gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1022 --TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred --HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 699999999999999999999999999999999999999999874 47999999999984 545 999999996 899
Q ss_pred EeecChh
Q psy3001 426 VEFDSPS 432 (602)
Q Consensus 426 ~~~g~~~ 432 (602)
+..|+..
T Consensus 1100 v~~G~~~ 1106 (1470)
T PLN03140 1100 IYSGPLG 1106 (1470)
T ss_pred EEECCcc
Confidence 9998764
No 370
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.94 E-value=1.8e-27 Score=264.32 Aligned_cols=122 Identities=43% Similarity=0.690 Sum_probs=117.3
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++++||++++||++|||||||||||||+++|+|+++|++|+|.+||+||+.++...+|++|+||||||++|++||++||
T Consensus 344 vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI 423 (567)
T COG1132 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENI 423 (567)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVGE-SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~~-~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.++.+ .++|++++|++.+++++++.++|+||||.|||+|.+|
T Consensus 424 ~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~L 466 (567)
T COG1132 424 ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466 (567)
T ss_pred hcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccC
Confidence 97755 7999999999999999999999999999999999987
No 371
>KOG0057|consensus
Probab=99.94 E-value=1.6e-27 Score=245.21 Aligned_cols=120 Identities=36% Similarity=0.555 Sum_probs=114.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++.+||+|++||+|||+|+|||||||++|+|+|+++ ++|+|.|||+||++++++.+|+-|||||||..||++||..||.
T Consensus 368 L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~ 446 (591)
T KOG0057|consen 368 LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIK 446 (591)
T ss_pred ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhh
Confidence 346999999999999999999999999999999999 9999999999999999999999999999999999999999998
Q ss_pred CCCC-CcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGE-SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~-~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
++.. .++|++.+++++++++|.+.++|+||+|.|||+|-.|
T Consensus 447 YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~L 488 (591)
T KOG0057|consen 447 YGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLML 488 (591)
T ss_pred cCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhccccc
Confidence 7654 6999999999999999999999999999999999754
No 372
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=4.4e-24 Score=227.23 Aligned_cols=229 Identities=25% Similarity=0.337 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCcccccccC------C--CCCCC------CCCCCcEEEe
Q psy3001 143 QPFKITQTLNWLVRMTSDVETNIVAVERIKEYGE------TPQEAEWVND------K--KPKDE------WPEKGEVEFK 202 (602)
Q Consensus 143 ~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~------~~~~~~~~~~------~--~~~~~------~~~~~~i~~~ 202 (602)
...++...++++...+..+.+..+...|+.++.. .+++.+.... . ..... ....+.+.++
T Consensus 331 aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~ 410 (604)
T COG4178 331 AFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLS 410 (604)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeec
Confidence 3445566788888999999999999999998863 2222211100 0 00000 0112345566
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCcee
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVF 282 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~ 282 (602)
+.+|.+++| +.+.|.|+||||||||+|+|+|+.|..+|+|..-. ...+-|+||. |++
T Consensus 411 ~l~~~v~~G-~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~-----------PY~ 467 (604)
T COG4178 411 ELNFEVRPG-ERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQR-----------PYL 467 (604)
T ss_pred cceeeeCCC-CEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCC-----------CCC
Confidence 666666666 88999999999999999999999999999997642 1246788886 332
Q ss_pred Eeeecccceeeeccccceeecccccccccccccch---hHHHH-----HHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 283 IFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSN---LQRFY-----VATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
- +++++ +.++.+.... ..+.. ....+..++++. .......|| +||
T Consensus 468 p-------------~GtLr------e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~------~~~W~~vLS--~GE 520 (604)
T COG4178 468 P-------------QGTLR------EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE------EDRWDRVLS--GGE 520 (604)
T ss_pred C-------------CccHH------HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc------cCcHhhhcC--hhH
Confidence 2 22221 1111111110 00000 011111222222 222344567 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEe
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
|||+++||.|+++|++++|||+||+||++++..+.+.+++...+.|||.|+||.....-.++.+.+.
T Consensus 521 qQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999999999999999999999888999999999998877655554443
No 373
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.94 E-value=7.6e-27 Score=260.72 Aligned_cols=120 Identities=33% Similarity=0.543 Sum_probs=115.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++|+++||||+||||||||+++|+|++ |++|+|.+||+|++.++.+++|++|+||||||++|++||++||.
T Consensus 366 L~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~ 444 (588)
T PRK11174 366 AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVL 444 (588)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhh
Confidence 44799999999999999999999999999999999 89999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. ++.++|++++|++.++++++++++|+||||.|||+|.||
T Consensus 445 ~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~L 486 (588)
T PRK11174 445 LGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486 (588)
T ss_pred cCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCC
Confidence 76 457999999999999999999999999999999999987
No 374
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.93 E-value=2.1e-26 Score=202.22 Aligned_cols=191 Identities=23% Similarity=0.311 Sum_probs=136.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC----eecCCCChHH----Hhhccceecccch
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG----VDIRTLGLHT----LRSRLTIIPQVLA 270 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g----~~~~~~~~~~----~~~~i~~v~Q~~~ 270 (602)
..++|+||+...| ||+++=|+||||||||++.|.+.|.|++|+|.+.- .|+....+.+ .|+.||||.|...
T Consensus 25 pV~~~vslsV~aG-ECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 25 PVLRNVSLSVNAG-ECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeceeEEecCc-cEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 4799999999998 99999999999999999999999999999999842 3444445443 3578999999432
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhccc-CCcccccCCcCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSR-SPIYSHFGETVT 349 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ls 349 (602)
.+ |-.- .--...+++-+ .....+.........+. .+.. ..+....+.+.|
T Consensus 104 vi-------PRV~--------------aLdVvaePll~-----~gv~~~~a~~~a~~Ll~---rLnlperLW~LaPaTFS 154 (235)
T COG4778 104 VI-------PRVS--------------ALDVVAEPLLA-----RGVPREVARAKAADLLT---RLNLPERLWSLAPATFS 154 (235)
T ss_pred hc-------cCcc--------------hHHHHHhHHHH-----cCCCHHHHHHHHHHHHH---HcCCCHHHhcCCCcccC
Confidence 11 1100 00000011100 11111222222222222 2222 223444566777
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEe
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
|||+||+.|||.++.|-+||+|||||++||..++..+.+.+++.+ .|..+|=|-||-+.-.. |||++.+.
T Consensus 155 --GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 --GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred --CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 599999999999999999999999999999999999999998864 57999999999888777 99998775
No 375
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.93 E-value=3.2e-26 Score=223.44 Aligned_cols=97 Identities=25% Similarity=0.263 Sum_probs=81.9
Q ss_pred HHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeee
Q psy3001 331 RLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAH 406 (602)
Q Consensus 331 ~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH 406 (602)
.++.++... ........+| +|||||++|||||+.+| ++|||||||++||+.+...+.+.+++.. ++.|+|+|||
T Consensus 120 ~l~~~~l~~~~~~~~~~~LS--gG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 120 FLVDVGLGYLTLSRSAPTLS--GGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHCCCCcccccCccCcCC--HHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 344444443 2455666777 69999999999999998 5999999999999999999999998764 4789999999
Q ss_pred cccccccCCeEEEE------eCceEEeec
Q psy3001 407 RLNTIIDSDRVLVL------DKGLVVEFD 429 (602)
Q Consensus 407 ~l~~i~~~d~i~~l------~~G~i~~~g 429 (602)
+++.+..||++++| ++|+|+++|
T Consensus 198 ~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 198 DEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 99988669999999 999999875
No 376
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.93 E-value=2.1e-26 Score=261.30 Aligned_cols=121 Identities=29% Similarity=0.470 Sum_probs=116.7
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||||+||||||||+|+|+|+++|++|+|.+||+|++.++++++|++|+||||||++|++||++||.
T Consensus 469 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~ 548 (686)
T TIGR03797 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA 548 (686)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
...+.++++++++++.++++++++++|+||||.+|++|.||
T Consensus 549 ~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~L 589 (686)
T TIGR03797 549 GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTL 589 (686)
T ss_pred cCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 76558899999999999999999999999999999999987
No 377
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.93 E-value=1.2e-25 Score=240.86 Aligned_cols=188 Identities=21% Similarity=0.262 Sum_probs=132.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+++||.+.+| +.+||+||||+|||||+|+|+|...|.+|+|.+.-. -.+||.+|+....
T Consensus 335 ~~l~~~~s~~i~~g-~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~igyf~Q~~~~l----- 397 (530)
T COG0488 335 RLLLKDLSFRIDRG-DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKIGYFDQHRDEL----- 397 (530)
T ss_pred ceeecCceEEecCC-CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEEEEEEehhhhc-----
Confidence 34556666666555 889999999999999999999999999999988641 2589999963211
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Q 356 (602)
..+.++.+.+.. ...... .......+...+..+ .....-..|| ||||-
T Consensus 398 -----------------------~~~~t~~d~l~~-~~~~~~-----e~~~r~~L~~f~F~~~~~~~~v~~LS--GGEk~ 446 (530)
T COG0488 398 -----------------------DPDKTVLEELSE-GFPDGD-----EQEVRAYLGRFGFTGEDQEKPVGVLS--GGEKA 446 (530)
T ss_pred -----------------------CccCcHHHHHHh-hCcccc-----HHHHHHHHHHcCCChHHHhCchhhcC--HhHHH
Confidence 011111111000 000000 111112222222211 1222333566 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEee-cChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF-DSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~-g~~~~l 434 (602)
|+.+|+.++.+|.+|||||||++||.++...+.++|..+. .|||+||||.+++.. |++++++++ ++..+ |+++++
T Consensus 447 Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 447 RLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 9999999999999999999999999999999999998864 499999999999999 999999999 77766 666665
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
.+
T Consensus 524 ~~ 525 (530)
T COG0488 524 LE 525 (530)
T ss_pred HH
Confidence 43
No 378
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=2.9e-26 Score=239.69 Aligned_cols=122 Identities=34% Similarity=0.565 Sum_probs=116.3
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLN 559 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~n 559 (602)
...+++||++++|+++||||+||||||||+++|+|+++|++|+|.+||+++...+..++|++++||||+|++|++|+|+|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN 414 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN 414 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-CcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 560 LDPVGE-SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 560 l~~~~~-~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+..... .+||+++++++.++|.++++. |+|+||.+||||.+|
T Consensus 415 i~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~L 457 (559)
T COG4988 415 ILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGL 457 (559)
T ss_pred hhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCC
Confidence 986544 789999999999999999999 999999999999986
No 379
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.93 E-value=5.5e-26 Score=253.86 Aligned_cols=121 Identities=33% Similarity=0.516 Sum_probs=116.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||+|++.++++.+|++|+||||||++|++|+++||.
T Consensus 357 l~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~ 436 (592)
T PRK10790 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVT 436 (592)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHH
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+....++++++++++.+|++++++++|+||||.++++|.+|
T Consensus 437 ~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 437 LGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred hCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 87777899999999999999999999999999999999986
No 380
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.92 E-value=2.9e-25 Score=199.83 Aligned_cols=136 Identities=33% Similarity=0.508 Sum_probs=101.5
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
++|+|+.+.+| ++++|+|+||||||||+++|+|.++|++|+|.++|.++...+....++.+++++|++..
T Consensus 1 L~~v~~~i~~g-~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------- 70 (137)
T PF00005_consen 1 LKNVSLEIKPG-EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQL--------- 70 (137)
T ss_dssp EEEEEEEEETT-SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCH---------
T ss_pred CCceEEEEcCC-CEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccc---------
Confidence 58999999998 99999999999999999999999999999999999999998888999999999997221
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcc-cCCcccccCCcCCCChhhHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVS-RSPIYSHFGETVTGNVGQRQLIC 359 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~lsgs~Gq~Qrl~ 359 (602)
+ .. .++.+ + .......+.++.+.... ....+......+| +|||||++
T Consensus 71 --~-------------~~-----~tv~~--------~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS--~Ge~~rl~ 118 (137)
T PF00005_consen 71 --F-------------PG-----LTVRE--------N--ESDERIEEVLKKLGLEDLLDRKIGQRASSLS--GGEKQRLA 118 (137)
T ss_dssp --H-------------TT-----SBHHH--------H--HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSC--HHHHHHHH
T ss_pred --c-------------cc-----ccccc--------c--cccccccccccccccccccccccccccchhh--HHHHHHHH
Confidence 1 00 00000 0 11111222223222211 1223333446677 69999999
Q ss_pred HHHHHhhCCCeEEEecccc
Q psy3001 360 LARALLRKTKILILDEATA 378 (602)
Q Consensus 360 lAral~~~p~iliLDEpts 378 (602)
|||||+++|+++|||||||
T Consensus 119 la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 119 LARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHTTSSEEEEESTTT
T ss_pred HHHHHHcCCCEEEEeCCCC
Confidence 9999999999999999996
No 381
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.92 E-value=2.4e-25 Score=212.17 Aligned_cols=164 Identities=21% Similarity=0.266 Sum_probs=121.2
Q ss_pred eeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCC---------ceEEECCeecCCCChHHHhhccceecccchhh
Q psy3001 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPAD---------GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 202 ~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~---------G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~ 272 (602)
+++++.+.+| +++|+||||||||||+++|+|+.+|.. |++.++|.+... ...+..+++++|++..+
T Consensus 14 ~~~~l~~~~g--~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~ 88 (197)
T cd03278 14 DKTTIPFPPG--LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR 88 (197)
T ss_pred CCeeeecCCC--cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc
Confidence 5567777664 899999999999999999999986653 467777776543 22357899999985432
Q ss_pred hhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+ . . . . . ....+.++ . ..........+| +
T Consensus 89 ~-----------~-----------~---~------------~----~---~~~~~~l~---~---~~~~~~~~~~LS--~ 116 (197)
T cd03278 89 Y-----------S-----------I---I------------S----Q---GDVSEIIE---A---PGKKVQRLSLLS--G 116 (197)
T ss_pred e-----------e-----------E---E------------e----h---hhHHHHHh---C---CCccccchhhcC--H
Confidence 0 0 0 0 0 0 01111111 1 111233344566 6
Q ss_pred hhHHHHHHHHHHh----hCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeC
Q psy3001 353 GQRQLICLARALL----RKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 353 Gq~Qrl~lAral~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
|||||++|||+++ .+|++++|||||++||+.....+.+.+++..++.|||+|||+++.+..||+++.+..
T Consensus 117 G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 117 GEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999997 467999999999999999999999999988767899999999998766999998863
No 382
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.3e-26 Score=236.57 Aligned_cols=136 Identities=32% Similarity=0.534 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEec
Q psy3001 467 FSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546 (602)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~ 546 (602)
+.++.+.|...+...+.++||++++||+|||+|+||||||||+++|+|.++|++|+|.++|.+++.++.+++|+.+++++
T Consensus 339 ~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~ 418 (573)
T COG4987 339 LRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLT 418 (573)
T ss_pred eccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhc
Confidence 33444455455545566899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccchhcccCCC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 547 QDPVLFSGTLRLNLDPV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 547 Qdp~lf~~Tv~~nl~~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
|.+++|++|+|+||... ++.+||+++++|+.++|.++++..|+||+|.+||+|.+|
T Consensus 419 Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~L 475 (573)
T COG4987 419 QRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRL 475 (573)
T ss_pred cchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcC
Confidence 99999999999999744 457999999999999999999999999999999999876
No 383
>KOG0066|consensus
Probab=99.92 E-value=1.7e-26 Score=229.64 Aligned_cols=348 Identities=19% Similarity=0.220 Sum_probs=192.8
Q ss_pred CCCCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhc--ccCCCCceEEECCeecCCCChHHH----h---hccce
Q psy3001 194 PEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFR--IIEPADGTIIIDGVDIRTLGLHTL----R---SRLTI 264 (602)
Q Consensus 194 ~~~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g--~~~~~~G~I~i~g~~~~~~~~~~~----~---~~i~~ 264 (602)
...+...|.|-++.+-.| ..+++|||||-|||||++.|+. +--|..=.++++-+.+..-+...+ + ++..+
T Consensus 273 SA~Gk~LFvnA~L~Iv~G-RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~l 351 (807)
T KOG0066|consen 273 SAQGKLLFVNASLTIVYG-RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLAL 351 (807)
T ss_pred ecccceeeeccceEEEec-ceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHH
Confidence 345778899999888777 8899999999999999999875 223444444444433321111100 0 01111
Q ss_pred ecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHH--HHHHHHHHHHHhhcccCCccc
Q psy3001 265 IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF--YVATSRQLKRLESVSRSPIYS 342 (602)
Q Consensus 265 v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 342 (602)
+..+...+- .+.++.....+.+.+ .+..+... ..+.++....+..++-++-..
T Consensus 352 Leee~~L~~--------------------q~e~Gd~taaErl~~-----v~~ELraiGA~sAEarARRILAGLGFskEMQ 406 (807)
T KOG0066|consen 352 LEEEAKLMS--------------------QIEEGDTTAAERLKE-----VADELRAIGADSAEARARRILAGLGFSKEMQ 406 (807)
T ss_pred HHHHHHHHH--------------------HHHcCchHHHHHHHH-----HHHHHHHhccccchhHHHHHHhhcCCChhHh
Confidence 111000000 000000000000000 00000000 111222223333343333222
Q ss_pred -ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEE
Q psy3001 343 -HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVL 420 (602)
Q Consensus 343 -~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l 420 (602)
......| ||.|-||+|||||...|-+|.|||||++||.....|+-..|..+. +|.++|||+-.++.+ |+.|+.|
T Consensus 407 ~rPt~kFS--GGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIVSHDQgFLD~VCtdIIHL 482 (807)
T KOG0066|consen 407 ERPTTKFS--GGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQGFLDSVCTDIIHL 482 (807)
T ss_pred cCCccccC--CceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEEecccchHHHHHHHHhhh
Confidence 2223455 699999999999999999999999999999999999988887764 699999999999998 9999999
Q ss_pred eCceEEeecChhHHhhc----c----hhHHHHHHHhhh-h---------------hHHHHHHHhh----------hhhHH
Q psy3001 421 DKGLVVEFDSPSVLMKN----K----ASIFYSMAKDAG-L---------------AWLAVRLETV----------GNLIT 466 (602)
Q Consensus 421 ~~G~i~~~g~~~~l~~~----~----~~~~~~~~~~~~-~---------------~~~~~~~~~~----------~~~~~ 466 (602)
++-++-.+.....++.. . ...|...-+... + ..+....... ....+
T Consensus 483 D~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapE 562 (807)
T KOG0066|consen 483 DNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPE 562 (807)
T ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhccccccCccccccCHH
Confidence 99887544322222211 0 001111000000 0 0000000000 00000
Q ss_pred HHHHHHHH----------------Hhccc---------ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCc
Q psy3001 467 FSAALLAV----------------LSKET---------LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG 521 (602)
Q Consensus 467 ~~~~~~~~----------------~~~~~---------~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G 521 (602)
+...-..| +.... .....++|-|.--.+|+||||||.|||||+++|.|-++|+.|
T Consensus 563 LL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~G 642 (807)
T KOG0066|consen 563 LLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDG 642 (807)
T ss_pred HHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcc
Confidence 00000000 00000 011235666666778999999999999999999999999999
Q ss_pred eEEECCeecCCCChhhhhccceEecCCc--cc-cccchhcccCCCCCCcHHHHHHHHHHcCCCc
Q psy3001 522 TIIIDGVDIRTLGLHTLRSRLTIIPQDP--VL-FSGTLRLNLDPVGESSDEAIWKALELAHLNT 582 (602)
Q Consensus 522 ~I~i~g~~i~~~~~~~lr~~i~~V~Qdp--~l-f~~Tv~~nl~~~~~~~~~~i~~al~~~~l~~ 582 (602)
+.+-+. |-+||+.-|.. .| -..|.-+.+...-..+.++...+|..+||..
T Consensus 643 E~RKnh-----------rL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~s 695 (807)
T KOG0066|consen 643 ELRKNH-----------RLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLAS 695 (807)
T ss_pred hhhccc-----------eeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhh
Confidence 876543 55799998865 22 2235444443222344567778888887754
No 384
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.92 E-value=8.2e-26 Score=257.31 Aligned_cols=121 Identities=31% Similarity=0.570 Sum_probs=116.1
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++|+++||+|+||||||||+++|+|+++|++|+|.+||+|++.++++++|++|+||||||++|++||++||.
T Consensus 490 L~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~ 569 (708)
T TIGR01193 490 LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLL 569 (708)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC--CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV--GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~--~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.+++++++.++|.||||.|+++|.+|
T Consensus 570 l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 570 LGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 65 457899999999999999999999999999999999987
No 385
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.92 E-value=9.6e-26 Score=229.84 Aligned_cols=122 Identities=30% Similarity=0.517 Sum_probs=116.1
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++.+||.+||+||+|||||||.|+|.|..+|.+|+|++||-|++.++++++-+.|||.|||.+||+|||.+||
T Consensus 351 il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNI 430 (580)
T COG4618 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENI 430 (580)
T ss_pred ceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHH
Confidence 35579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.-. ++.+++.|.+|++.++.||++-++|+||||.||++|+.|
T Consensus 431 aRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~L 473 (580)
T COG4618 431 ARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATL 473 (580)
T ss_pred HhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCC
Confidence 754 467888899999999999999999999999999999986
No 386
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.92 E-value=9.9e-26 Score=256.90 Aligned_cols=121 Identities=27% Similarity=0.456 Sum_probs=116.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||+|++.++.+++|++|+||||||++|++||++||.
T Consensus 495 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~ 574 (710)
T TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLT 574 (710)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhh
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ..++++++++++.++++++++++|+||||.++|+|.||
T Consensus 575 l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~L 616 (710)
T TIGR03796 575 LWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANL 616 (710)
T ss_pred CCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCC
Confidence 653 57899999999999999999999999999999999987
No 387
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.92 E-value=1.4e-25 Score=254.61 Aligned_cols=121 Identities=30% Similarity=0.526 Sum_probs=115.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.+|++|+||||||++|++|||+||.
T Consensus 497 L~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~ 576 (711)
T TIGR00958 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIA 576 (711)
T ss_pred ccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+. +..++|+++++++.++++++++++|+||||.+|++|.+|
T Consensus 577 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 618 (711)
T TIGR00958 577 YGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQL 618 (711)
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcC
Confidence 65 456899999999999999999999999999999999986
No 388
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-24 Score=194.41 Aligned_cols=179 Identities=22% Similarity=0.270 Sum_probs=128.0
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
....|.++||++.+| |.+-|.||||||||||+++|+|+.+|++|+|.++|.++.... +..++.+.|+-..+..
T Consensus 14 e~~lf~~L~f~l~~G-e~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~yLGH~~gi----- 86 (209)
T COG4133 14 ERTLFSDLSFTLNAG-EALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLYLGHQPGI----- 86 (209)
T ss_pred cceeecceeEEEcCC-CEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHHhhccccc-----
Confidence 457899999999999 999999999999999999999999999999999998887643 2335666666543211
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHH--HHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV--ATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
...-+..+++.+ .+.+.. ......+.+..+++.......-..|| .||
T Consensus 87 ------------------------K~eLTa~ENL~F-----~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LS--AGQ 135 (209)
T COG4133 87 ------------------------KTELTALENLHF-----WQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLS--AGQ 135 (209)
T ss_pred ------------------------cchhhHHHHHHH-----HHHHhCCCchhhHHHHHHHcCcccccccchhhcc--hhH
Confidence 000011111000 001111 11222333445555444443444566 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeeccccccc
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIID 413 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~ 413 (602)
|+||||||..+..+++.|||||+++||.+.+..+...+... .+|..||..||..-.+..
T Consensus 136 qRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 136 QRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred HHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 99999999999999999999999999999999998888765 457889999999776654
No 389
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.92 E-value=2.1e-25 Score=248.98 Aligned_cols=121 Identities=28% Similarity=0.461 Sum_probs=115.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||+|++.++.+++|++|+||||||++|++||++||.
T Consensus 359 l~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~ 438 (582)
T PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIA 438 (582)
T ss_pred ccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-C-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-G-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. + ..++++++++++.++++++++++|+||||.+|++|.+|
T Consensus 439 ~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~L 481 (582)
T PRK11176 439 YARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481 (582)
T ss_pred cCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcC
Confidence 64 2 36899999999999999999999999999999999986
No 390
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.92 E-value=1.9e-25 Score=253.71 Aligned_cols=121 Identities=39% Similarity=0.647 Sum_probs=116.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||||+||||||||+++|+|+++|++|+|.+||+|++.++.+++|+.|+||||||++|++||++||.
T Consensus 481 L~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~ 560 (694)
T TIGR03375 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIA 560 (694)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-CcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGE-SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~-~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
...+ .++++++++++.++++++++++|+||||.++++|.||
T Consensus 561 ~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~L 602 (694)
T TIGR03375 561 LGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602 (694)
T ss_pred CCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCC
Confidence 7654 7899999999999999999999999999999999987
No 391
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.92 E-value=1.2e-24 Score=214.25 Aligned_cols=102 Identities=26% Similarity=0.349 Sum_probs=86.0
Q ss_pred HHHHHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhhC---CCeEEEecccccCChhHHHHHHHHHHHhc-cccEEE
Q psy3001 328 QLKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRK---TKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVL 402 (602)
Q Consensus 328 ~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~~---p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi 402 (602)
..+.++.+++.. .......++| |||+||++|||+|+++ |+++||||||++||+.....+.+.++++. .+.|+|
T Consensus 149 ~~~~L~~vgL~~l~l~~~~~~LS--gGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvI 226 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQPATTLS--GGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVV 226 (261)
T ss_pred HHHHHHHcCCchhhhcCccccCC--HHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 344455555554 2455566777 6999999999999996 79999999999999999999999998865 478999
Q ss_pred EeeecccccccCCeEEEE------eCceEEeecCh
Q psy3001 403 TIAHRLNTIIDSDRVLVL------DKGLVVEFDSP 431 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l------~~G~i~~~g~~ 431 (602)
+|+|+++.+..||++++| ++|++++.|++
T Consensus 227 iitH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 227 VIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEeCCHHHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 999999998779999999 89999998864
No 392
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.92 E-value=3.6e-25 Score=244.18 Aligned_cols=121 Identities=36% Similarity=0.615 Sum_probs=115.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||||++|++||++|+.
T Consensus 338 l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~ 417 (529)
T TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIR 417 (529)
T ss_pred ccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHh
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.++++++++++|+||||.++++|.+|
T Consensus 418 ~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~L 459 (529)
T TIGR02857 418 LARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGL 459 (529)
T ss_pred ccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccC
Confidence 65 456899999999999999999999999999999999886
No 393
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.92 E-value=3.9e-25 Score=245.28 Aligned_cols=120 Identities=33% Similarity=0.483 Sum_probs=114.7
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||+|++.++.+++|+.|+||||||++|++|+++|+.
T Consensus 356 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~ 435 (574)
T PRK11160 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLL 435 (574)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.+++++++++ |+||||.+|++|.+|
T Consensus 436 ~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L 476 (574)
T PRK11160 436 LAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL 476 (574)
T ss_pred cCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence 65 45789999999999999999999 999999999999986
No 394
>KOG0056|consensus
Probab=99.91 E-value=1.8e-25 Score=225.37 Aligned_cols=122 Identities=33% Similarity=0.542 Sum_probs=116.3
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++++||++.+|+.+|+|||+|+||||++++|+|+++.++|+|.|||+||+....+.+|+.||+||||..||++||..||
T Consensus 553 vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNI 632 (790)
T KOG0056|consen 553 VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNI 632 (790)
T ss_pred eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeehe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.+. +.+++||+.+|++.+++++-+-++|.||.|.|||+|-.|
T Consensus 633 ryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkL 675 (790)
T KOG0056|consen 633 RYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKL 675 (790)
T ss_pred eecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccccc
Confidence 865 457999999999999999999999999999999999764
No 395
>KOG0061|consensus
Probab=99.91 E-value=2.5e-24 Score=237.48 Aligned_cols=205 Identities=23% Similarity=0.319 Sum_probs=151.4
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC---CCceEEECCeecCCCChHHHhhccceecccchhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP---ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~---~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~ 273 (602)
.+..++|||....+| |+.||+||||||||||+++|+|-.+. .+|+|.+||++ .+.+.+++..+||+|+
T Consensus 42 ~k~iL~~vsg~~~~G-el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~~~~~~s~yV~Qd----- 112 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPG-ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSRSFRKISGYVQQD----- 112 (613)
T ss_pred cceeeeCcEEEEecC-eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---CchhhhhheeEEEccc-----
Confidence 356899999999998 99999999999999999999999975 68999999953 3567789999999997
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccc--cccccccccchhHHHHHHHHHHHHHHhhcccCC----cccc-cCC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV--KPLIITPFCSNLQRFYVATSRQLKRLESVSRSP----IYSH-FGE 346 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~-~~~ 346 (602)
..++ .++...|.+ .+.+..+.....++. ..+..+.+..+++.. .++. ...
T Consensus 113 ------D~l~--------------~~LTV~EtL~f~A~lrlp~~~~~~~k---~~~V~~vi~~LgL~~~~~t~ig~~~~r 169 (613)
T KOG0061|consen 113 ------DVLL--------------PTLTVRETLRFSALLRLPSSLSKEEK---RERVEEVISELGLEKCADTLIGNPGIR 169 (613)
T ss_pred ------cccc--------------ccccHHHHHHHHHHhcCCCCCCHHHH---HHHHHHHHHHcCChhhccceecCCCCC
Confidence 2221 111111211 111111111111222 222333333444332 2221 112
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccc-ccc-CCeEEEEeCc
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNT-IID-SDRVLVLDKG 423 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-i~~-~d~i~~l~~G 423 (602)
.+| ||||+||++|.-|+.||.||+||||||+||..++..+.+.|+++. +|+|||+.=|.++. +.+ .|++++|.+|
T Consensus 170 giS--GGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G 247 (613)
T KOG0061|consen 170 GLS--GGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEG 247 (613)
T ss_pred ccc--cchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCC
Confidence 355 699999999999999999999999999999999999999999975 48999999999975 445 9999999999
Q ss_pred eEEeecChhHHh
Q psy3001 424 LVVEFDSPSVLM 435 (602)
Q Consensus 424 ~i~~~g~~~~l~ 435 (602)
+++-.|+++++.
T Consensus 248 ~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 248 EVVYSGSPRELL 259 (613)
T ss_pred cEEEecCHHHHH
Confidence 999999987664
No 396
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.91 E-value=1.1e-24 Score=242.90 Aligned_cols=121 Identities=33% Similarity=0.514 Sum_probs=115.7
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||+++|+|+||||||||+++|+|+++|++|+|.+||++++.++.+++|++++||||||++|++|+++||.
T Consensus 348 l~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~ 427 (571)
T TIGR02203 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIA 427 (571)
T ss_pred ccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~--~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ..++++++++++.+++++++.++|+||||.++++|.+|
T Consensus 428 ~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~L 470 (571)
T TIGR02203 428 YGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLL 470 (571)
T ss_pred cCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcC
Confidence 653 57899999999999999999999999999999999886
No 397
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.91 E-value=1.6e-24 Score=241.83 Aligned_cols=121 Identities=35% Similarity=0.512 Sum_probs=115.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||+++|+|+||||||||+++|+|+++|++|+|.+||++++.++.+.+|++|+||||||++|++|+++||.
T Consensus 351 L~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~ 430 (588)
T PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIR 430 (588)
T ss_pred ecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.++++++++++|+|+||.++++|.+|
T Consensus 431 ~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~L 472 (588)
T PRK13657 431 VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL 472 (588)
T ss_pred cCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCC
Confidence 65 456899999999999999999999999999999999886
No 398
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.90 E-value=3e-24 Score=239.54 Aligned_cols=121 Identities=37% Similarity=0.606 Sum_probs=115.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.+++.++.+++|++++|+||||++|++|+++||.
T Consensus 356 L~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~ 435 (576)
T TIGR02204 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIR 435 (576)
T ss_pred ccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHh
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+. +..++++++++++.+++.++++++|+|+||.++++|.+|
T Consensus 436 ~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~L 477 (576)
T TIGR02204 436 YGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL 477 (576)
T ss_pred cCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcC
Confidence 64 346889999999999999999999999999999999886
No 399
>KOG0059|consensus
Probab=99.90 E-value=5.6e-24 Score=244.73 Aligned_cols=203 Identities=21% Similarity=0.277 Sum_probs=154.6
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC-ChHHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL-GLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~-~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++++|+.++++ |+.|+.|+|||||||++|++.|..+|++|++.++|.++..- +....++.+||+||.-...-
T Consensus 580 Av~~ls~~V~~g-ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~----- 653 (885)
T KOG0059|consen 580 AVRGLSFAVPPG-ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWE----- 653 (885)
T ss_pred hhcceEEEecCC-ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhh-----
Confidence 688999999998 99999999999999999999999999999999999998764 44468999999999611100
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhH--HHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQ--RFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
.-+. .+.++ ......++. +.... ....++.+++.+.....-..+| ||+|+
T Consensus 654 ------------------~lT~--rEhL~---~~arlrG~~~~di~~~---v~~ll~~~~L~~~~~~~~~~yS--gG~kR 705 (885)
T KOG0059|consen 654 ------------------ELTG--REHLE---FYARLRGLPRSDIGSA---IEKLLRLVGLGPYANKQVRTYS--GGNKR 705 (885)
T ss_pred ------------------hccH--HHHHH---HHHHHcCCChhHHHHH---HHHHHHHcCChhhhccchhhCC--Ccchh
Confidence 0000 00000 000000000 11111 1222334444443444444566 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccc-cEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|+++|-|++.+|++++|||||+++||.+++.+++.+++..++ +.+|+.||.+++.+. |||+.+|.+|++...|+++++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~L 785 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQEL 785 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHH
Confidence 999999999999999999999999999999999999998765 599999999999998 999999999999999999987
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
-.
T Consensus 786 Ks 787 (885)
T KOG0059|consen 786 KS 787 (885)
T ss_pred Hh
Confidence 53
No 400
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.90 E-value=4.3e-24 Score=206.81 Aligned_cols=171 Identities=17% Similarity=0.085 Sum_probs=112.0
Q ss_pred CceEEEEeccCCChhHHHHHHhc-ccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccc
Q psy3001 212 LELVGIVGRTGAGKSSLTLALFR-IIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVS 290 (602)
Q Consensus 212 ~e~~~lvG~sGsGKSTL~~ll~g-~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~ 290 (602)
+++++|+|+||||||||+++|++ ++.+..+....+ .....+........+++++|++...+.
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~f~~~~~~~~---------------- 90 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEVSFTFQLGGKKYR---------------- 90 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEEEEEEEECCeEEE----------------
Confidence 37999999999999999999995 555554544432 111122222334556666665321110
Q ss_pred eeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhh----
Q psy3001 291 VLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLR---- 366 (602)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~---- 366 (602)
.. + . .....+.+..... +...............+| +||+||+++|||++.
T Consensus 91 ---------~~-----r-~----~gl~~~~~~~~~~-----l~~g~l~~~l~~~~~~lS--~G~~~r~~la~al~~~p~~ 144 (213)
T cd03279 91 ---------VE-----R-S----RGLDYDQFTRIVL-----LPQGEFDRFLARPVSTLS--GGETFLASLSLALALSEVL 144 (213)
T ss_pred ---------EE-----E-e----cCCCHHHHHHhhh-----hhhcchHHHhcCCccccC--HHHHHHHHHHHHHHhHHHh
Confidence 00 0 0 0001111111000 000011112344455677 699999999999985
Q ss_pred ------CCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 367 ------KTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 367 ------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
+|++++|||||++||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||+++++++|..
T Consensus 145 ~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 145 QNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 5789999999999999999999999988755 7899999999999988 899999998854
No 401
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.90 E-value=5.7e-24 Score=241.55 Aligned_cols=121 Identities=35% Similarity=0.530 Sum_probs=115.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||+|++.++.+++|++++||||||.+|++|+++||.
T Consensus 473 l~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~ 552 (694)
T TIGR01846 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIA 552 (694)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHh
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.++++++++++|+||||.++++|.+|
T Consensus 553 ~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L 594 (694)
T TIGR01846 553 LCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594 (694)
T ss_pred cCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC
Confidence 64 456899999999999999999999999999999999986
No 402
>KOG0060|consensus
Probab=99.90 E-value=8.2e-21 Score=196.52 Aligned_cols=194 Identities=21% Similarity=0.279 Sum_probs=130.1
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+.+..+|+||.++.| +-+.|+||||||||+|++.+.|+.+..+|.+.--...- .+.+-|+||-
T Consensus 447 g~~lie~Ls~~V~~g-~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~--------~~~lfflPQr-------- 509 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSG-QNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG--------PKDLFFLPQR-------- 509 (659)
T ss_pred CceeeeeeeeEecCC-CeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC--------CCceEEecCC--------
Confidence 566677777777776 78999999999999999999999999999998643211 1457899997
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHH--HHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF--YVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
|++-.+++....+|..... +...+. .....+.+. .......+++...+. .+..-+..+.|| +||
T Consensus 510 ---PYmt~GTLRdQvIYP~~~~-----~~~~~~---~~d~~i~r~Le~v~L~hl~~r~ggld-~~~~~dW~dvLS--~GE 575 (659)
T KOG0060|consen 510 ---PYMTLGTLRDQVIYPLKAE-----DMDSKS---ASDEDILRILENVQLGHLLEREGGLD-QQVDWDWMDVLS--PGE 575 (659)
T ss_pred ---CCccccchhheeeccCccc-----cccccC---CCHHHHHHHHHHhhhhhHHHHhCCCC-chhhccHHhhcC--HHH
Confidence 4333222111111110000 000000 000011111 111122222211111 123445566788 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCc
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G 423 (602)
+||+|.||.++++|++-||||.||++|.+.|..+.+.+++ .|.|.|.|+||.+...--|.++-|+.+
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHHhhhhEEEEecCC
Confidence 9999999999999999999999999999999999988876 479999999999999888988888753
No 403
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.89 E-value=9.7e-24 Score=211.08 Aligned_cols=121 Identities=40% Similarity=0.685 Sum_probs=113.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++++||+|++||++||+|+||||||||+++|+|+++ ++|+|.+||.++...+...+|++++||||+|.+|++||++|+
T Consensus 19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl 97 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL 97 (275)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHh
Confidence 3457999999999999999999999999999999998 799999999999988888999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
++....++++++++++.++|.+++.++|++|++.++++|.+|
T Consensus 98 ~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~L 139 (275)
T cd03289 98 DPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVL 139 (275)
T ss_pred hhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCC
Confidence 876667788999999999999999999999999999999886
No 404
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.89 E-value=1.2e-23 Score=233.51 Aligned_cols=121 Identities=30% Similarity=0.440 Sum_probs=115.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++|++++|+|+||||||||+++|+|+++|++|+|.+||++++..+..++|+.++||||+|++|++|+++||.
T Consensus 331 l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~ 410 (569)
T PRK10789 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIA 410 (569)
T ss_pred ccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHh
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.+++++++.++|+|++|.++++|.+|
T Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~L 452 (569)
T PRK10789 411 LGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVML 452 (569)
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcC
Confidence 65 456899999999999999999999999999999999886
No 405
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.89 E-value=1.7e-22 Score=211.08 Aligned_cols=207 Identities=26% Similarity=0.361 Sum_probs=149.3
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++|+||+.++| |++||.|--|||+|=++++|.|..++.+|+|.++|+++.-.++. .++..|+|||.+....-++.
T Consensus 274 ~~~dvSf~vr~G-EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l-- 350 (500)
T COG1129 274 KVRDVSFTVRAG-EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL-- 350 (500)
T ss_pred ceeCceeEEeCC-cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC--
Confidence 689999999999 99999999999999999999999999999999999998877655 78889999998744221110
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-c-cchhHHHHHHHHHHHHHHhhccc-CCcccccCCcCCCChhhH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F-CSNLQRFYVATSRQLKRLESVSR-SPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~lsgs~Gq~ 355 (602)
..++..|-.+....... . ..+.........+..+ .+.. .+-....-.+|| ||-+
T Consensus 351 ------------------~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~---~l~Ik~~s~~~~v~~LS--GGNQ 407 (500)
T COG1129 351 ------------------DMSIAENITLASLRRFSRRGLIDRRKERALAERYIR---RLRIKTPSPEQPIGTLS--GGNQ 407 (500)
T ss_pred ------------------CCcHHHheehHhhhhhccccccChHHHHHHHHHHHH---hcCcccCCccchhhcCC--chhh
Confidence 11111111111000000 0 0000011111112222 2221 111223334566 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
|+|.|||+|..+|++|||||||.++|.-+..+|.+.++++. +|++||+||-++.++.. ||||+||++|+++..-+.+
T Consensus 408 QKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 408 QKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred hhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 99999999999999999999999999999999999999875 57999999999999987 9999999999998754433
No 406
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.89 E-value=1.9e-23 Score=230.91 Aligned_cols=120 Identities=28% Similarity=0.507 Sum_probs=114.1
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccCC
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDP 562 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~~ 562 (602)
+++||++++||++||+|+||||||||+++|+|+++|++|+|.+||++++.++.+.+|+.++||||||++|++|+++|+..
T Consensus 335 ~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~ 414 (544)
T TIGR01842 335 RGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIAR 414 (544)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 563 VG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 563 ~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. ..++++++++++.++++++++++|+|+||.++++|.+|
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~L 455 (544)
T TIGR01842 415 FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATL 455 (544)
T ss_pred cCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCC
Confidence 43 47899999999999999999999999999999999886
No 407
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.88 E-value=1.5e-23 Score=185.15 Aligned_cols=195 Identities=18% Similarity=0.304 Sum_probs=144.7
Q ss_pred EEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEe
Q psy3001 205 KVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIF 284 (602)
Q Consensus 205 s~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~ 284 (602)
|-....| |++-+|||||||||||+..++|+. |.+|+|.++|.++..++..++.++=+|+.|+..--|.+ |++-
T Consensus 19 S~qv~aG-e~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~m----pV~~- 91 (248)
T COG4138 19 SGEVRAG-EILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAM----PVWH- 91 (248)
T ss_pred ccccccc-eEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchh----hhhh-
Confidence 3334445 999999999999999999999987 57999999999999999999999999999863321110 1110
Q ss_pred eecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHH
Q psy3001 285 VIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARAL 364 (602)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral 364 (602)
|+. .....+......+...+ .+...+...+.-..+| |||-|||-+|...
T Consensus 92 ----------YL~----------------L~qP~~~~a~~i~~i~~---~L~l~DKL~Rs~~qLS--GGEWQRVRLAav~ 140 (248)
T COG4138 92 ----------YLT----------------LHQPDKTRTELLNDVAG---ALALDDKLGRSTNQLS--GGEWQRVRLAAVV 140 (248)
T ss_pred ----------hhh----------------hcCchHHHHHHHHHHHh---hhcccchhhhhhhhcC--cccceeeEEeEEE
Confidence 000 00000111111111111 3444555666666778 5999999999988
Q ss_pred hh-------CCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 365 LR-------KTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 365 ~~-------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
++ ..++|++|||-++||...+..+...+..+. .|.+||+.+||+.--.+ ||+++.+..|++...|..+|++
T Consensus 141 LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 141 LQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred EEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 76 235999999999999999888888887764 58999999999987554 9999999999999999988887
Q ss_pred hc
Q psy3001 436 KN 437 (602)
Q Consensus 436 ~~ 437 (602)
..
T Consensus 221 t~ 222 (248)
T COG4138 221 TP 222 (248)
T ss_pred Ch
Confidence 54
No 408
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.88 E-value=1.5e-22 Score=230.17 Aligned_cols=173 Identities=21% Similarity=0.243 Sum_probs=121.6
Q ss_pred HhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeec
Q psy3001 332 LESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHR 407 (602)
Q Consensus 332 l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~ 407 (602)
++.+++..+ ......+|| |||+|||+|||||..+| ++|||||||++||+.....+.+.|+++.+ |.|||+|+|+
T Consensus 473 L~~vGL~~l~l~r~~~~LS--gGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLS--GGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred hhccccCCCCCCCchhhCC--HHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 334444433 344555677 69999999999999997 99999999999999999999999998754 7999999999
Q ss_pred ccccccCCeEEEE------eCceEEeecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhh-hhHHHHHHHHHHHhcccc
Q psy3001 408 LNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVG-NLITFSAALLAVLSKETL 480 (602)
Q Consensus 408 l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 480 (602)
++.+..||+|++| ++|+++..|+++++....................+....+.. ..+.+... ..-
T Consensus 551 ~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~L~v~~l-------~~~ 623 (943)
T PRK00349 551 EDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKNPNSLTGQYLSGKKKIEVPKERRKGNGKFLKLKGA-------REN 623 (943)
T ss_pred HHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcChhheeehhhcccccccccccccCCCcceEEecCC-------ccC
Confidence 9998789999999 999999999999886542211100100000000000000000 00111100 011
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHH
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~ 513 (602)
.+++++|+|++||++||+|.||||||||++-+.
T Consensus 624 ~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 624 NLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 245799999999999999999999999998764
No 409
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=1e-22 Score=202.52 Aligned_cols=186 Identities=17% Similarity=0.215 Sum_probs=117.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCC-CceEEECCe-ecCCCC--hHHHhhccceecccchhhhhhc--cCCceeEee-
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDGV-DIRTLG--LHTLRSRLTIIPQVLATIFVIC--YSTPVFIFV- 285 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~-~G~I~i~g~-~~~~~~--~~~~~~~i~~v~Q~~~~~~~~~--~~~~~~~~~- 285 (602)
.+++||||||||||||+++|.+++.+. .|++...+. ++.... ....+..+.+++|++....... ...|.+...
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r 105 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTR 105 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEE
Confidence 689999999999999999999999886 568888776 332111 1122458889999753211000 000111100
Q ss_pred ecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC--------------------CcccccC
Q psy3001 286 IVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS--------------------PIYSHFG 345 (602)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~ 345 (602)
.+..+. ......+ ...... .+..+.++.++.. .......
T Consensus 106 ~I~~~~-----~~~~~in-------------~~~~~~---~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~ 164 (251)
T cd03273 106 QIVLGG-----TNKYLIN-------------GHRAQQ---QRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL 164 (251)
T ss_pred EEEcCC-----ceEEEEC-------------CEEeeH---HHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc
Confidence 000000 0000000 000000 1111122222221 1123344
Q ss_pred CcCCCChhhHHHHHHHHHHh----hCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEe
Q psy3001 346 ETVTGNVGQRQLICLARALL----RKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
..+| +|||||++|||||+ .+|++++|||||++||+.+..++.+.+++..++.|+|+|||+.+.+..||+++-+.
T Consensus 165 ~~lS--~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 165 TELS--GGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred cccC--HHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 5666 69999999999998 57899999999999999999999999998877889999999977777799998775
No 410
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.88 E-value=1.6e-22 Score=200.45 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=66.4
Q ss_pred ccCCcCCCChhhHHHHHHHHHHhh----CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEE
Q psy3001 343 HFGETVTGNVGQRQLICLARALLR----KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVL 418 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lAral~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~ 418 (602)
.....+| +|||||++||||++. +|++++|||||++||+.+...+.+.++++.++.++|+++|+.+....||+++
T Consensus 154 ~~~~~lS--~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~ 231 (243)
T cd03272 154 QEMQQLS--GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFY 231 (243)
T ss_pred ccccccC--HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEE
Confidence 3455666 699999999999973 6899999999999999999999999988866788999999977655599999
Q ss_pred EEe
Q psy3001 419 VLD 421 (602)
Q Consensus 419 ~l~ 421 (602)
+|.
T Consensus 232 ~l~ 234 (243)
T cd03272 232 GVK 234 (243)
T ss_pred EEE
Confidence 986
No 411
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.88 E-value=9.2e-23 Score=226.71 Aligned_cols=121 Identities=32% Similarity=0.470 Sum_probs=114.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++||++||+|+||||||||+++|+|+++|++|+|.+||++++.++.+.+|+.++||||||++|++|+++|+.
T Consensus 351 l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~ 430 (585)
T TIGR01192 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIR 430 (585)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHh
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.+++++++.++|+|++|.++++|.+|
T Consensus 431 ~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~L 472 (585)
T TIGR01192 431 LGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472 (585)
T ss_pred cCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCC
Confidence 65 346899999999999999999999999999999999876
No 412
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=2.8e-23 Score=207.33 Aligned_cols=118 Identities=35% Similarity=0.580 Sum_probs=113.4
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccCCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPV 563 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~~~ 563 (602)
+++|++..|+++||||++|+||||++++|+|+|++++|.|.+||+|++....+.+|+.||+||||..||++|+..|+.+.
T Consensus 281 ~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~yg 360 (497)
T COG5265 281 GISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYG 360 (497)
T ss_pred CccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhcc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 564 -GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 564 -~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
+..+++|+++|++.+.+++|++.+|.||+|.|||+|-.
T Consensus 361 r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 361 RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 45799999999999999999999999999999999854
No 413
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.87 E-value=1.1e-22 Score=230.64 Aligned_cols=171 Identities=22% Similarity=0.247 Sum_probs=119.9
Q ss_pred HhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeec
Q psy3001 332 LESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHR 407 (602)
Q Consensus 332 l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~ 407 (602)
+..+++..+ ......+|| |||+|||+|||||..+| ++|||||||++||+.....+.+.|+++. +|.|||+|+|+
T Consensus 471 L~~vgL~~l~l~r~~~tLS--GGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd 548 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLS--GGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD 548 (924)
T ss_pred HhhccccccccCCCcCcCC--HHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 334444433 345566777 69999999999999986 8999999999999999999999998875 47899999999
Q ss_pred ccccccCCeEEEE------eCceEEeecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhh-hHHHHHHHHHHHhcccc
Q psy3001 408 LNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGN-LITFSAALLAVLSKETL 480 (602)
Q Consensus 408 l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 480 (602)
++.+..||+|++| ++|+|+..|+++++....................+....+... .+.+... ..-
T Consensus 549 ~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~~~~lt~~~l~~~~~~~~~~~~~~~~~~~l~l~~~-------~~~ 621 (924)
T TIGR00630 549 EETIRAADYVIDIGPGAGIHGGEVVASGTPEEILANPDSLTGQYLSGKKKIEVPKERRPGNGKFLTLKGA-------REN 621 (924)
T ss_pred HHHHhhCCEEEEecccccCCCCEEeeccCHHHHhcCchheeeecccccccccccccccCCCcceEEEEeC-------ccC
Confidence 9998889999999 8999999999988754322111000000000000000000000 0000000 011
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHH
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLA 511 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~ 511 (602)
.+++++|+|+.|++++|+|+||||||||++-
T Consensus 622 ~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~ 652 (924)
T TIGR00630 622 NLKNITVSIPLGLFTCITGVSGSGKSTLIND 652 (924)
T ss_pred CcCceEEEEeCCCEEEEECCCCCCHHHHHHH
Confidence 3567999999999999999999999999983
No 414
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.87 E-value=3.1e-22 Score=181.76 Aligned_cols=223 Identities=23% Similarity=0.289 Sum_probs=163.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC----CCceEEECCeecCCCChHHHhh----ccceecccch
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP----ADGTIIIDGVDIRTLGLHTLRS----RLTIIPQVLA 270 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~----~~G~I~i~g~~~~~~~~~~~~~----~i~~v~Q~~~ 270 (602)
-.++++|.+..+| |+-|+||+||||||-+.|+|+|..+- +.-...+++.++-.+++...|+ .|++++|+|.
T Consensus 21 K~VD~v~ltlnEG-Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 21 KAVDRVSMTLNEG-EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred Eeeeeeeeeeccc-eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 3689999999998 99999999999999999999998763 4566778899999999988775 5677888753
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccc-cc-cchhHHHHHHHHHHHHHHhhcccC---CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PF-CSNLQRFYVATSRQLKRLESVSRS---PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~ 345 (602)
.-. ..+-.....+-.++-. .+ ....+.|-.+..++.+.+-.++.. +....++
T Consensus 100 sCL-----------------------DPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP 156 (330)
T COG4170 100 SCL-----------------------DPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP 156 (330)
T ss_pred hhc-----------------------ChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc
Confidence 211 0000000000000000 00 111222222333444444344332 2344456
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
..+.. ||-|+|.||.|++.+|++||-||||+++|+.+...++..|.+..+ +.|+++++||+..+.+ ||+|-||.-
T Consensus 157 ~ElTe--GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYC 234 (330)
T COG4170 157 YELTE--GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYC 234 (330)
T ss_pred chhcc--CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEe
Confidence 66663 999999999999999999999999999999999999999987654 6899999999999998 999999999
Q ss_pred ceEEeecChhHHhhcchhHHHHHHH
Q psy3001 423 GLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 423 G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|+-++.+..++++..+...|....-
T Consensus 235 GQ~~ESa~~e~l~~~PhHPYTqALi 259 (330)
T COG4170 235 GQTVESAPSEELVTMPHHPYTQALI 259 (330)
T ss_pred cccccccchhHHhcCCCCchHHHHH
Confidence 9999999999999887777765543
No 415
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.87 E-value=7.4e-22 Score=233.27 Aligned_cols=169 Identities=21% Similarity=0.212 Sum_probs=118.2
Q ss_pred HhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeec
Q psy3001 332 LESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHR 407 (602)
Q Consensus 332 l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~ 407 (602)
+..+++..+ ......+|| |||+|||+|||||..+| ++|||||||++||+.+.+.+.+.|+++. +|.|||+|+||
T Consensus 460 L~~vGL~~L~ldR~~~tLS--GGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd 537 (1809)
T PRK00635 460 LIDLGLPYLTPERALATLS--GGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHD 537 (1809)
T ss_pred HHhccccCCCCCCchhhCC--HHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 334444433 344455677 69999999999999999 8999999999999999999999999875 47999999999
Q ss_pred ccccccCCeEEEEe------CceEEeecChhHHhhcchhHHHHHHHhhhhhHH-HHHHHhhhhhHHHHHHHHHHHhcccc
Q psy3001 408 LNTIIDSDRVLVLD------KGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWL-AVRLETVGNLITFSAALLAVLSKETL 480 (602)
Q Consensus 408 l~~i~~~d~i~~l~------~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (602)
++.+..||++++|. +|+++..|++++++.........+.... .... +.........+.+... ..-
T Consensus 538 ~~vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil~~~~~l~~~~l~~~-~~~~~~~~~~~~~~~L~l~~~-------~~~ 609 (1809)
T PRK00635 538 EQMISLADRIIDIGPGAGIFGGEVLFNGSPREFLAKSDSLTAKYLRQE-LTIPIPEKRTNSLGTLTLSKA-------TKH 609 (1809)
T ss_pred HHHHHhCCEEEEEcCCcccCCCEEEEecCHHHHhhChHHHHHHHhcCc-ccccCcccccCCCCeEEEecc-------ccC
Confidence 99665599999996 7899999998887654221111111100 0000 0000000000011100 011
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHH
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTL 510 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~ 510 (602)
.+++++|+|+.||+++|+|+||||||||++
T Consensus 610 ~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 610 NLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred CccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 356799999999999999999999999999
No 416
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.87 E-value=6.3e-22 Score=189.81 Aligned_cols=161 Identities=21% Similarity=0.254 Sum_probs=109.6
Q ss_pred ceEEEEeccCCChhHHHHHHh----cccCCCCceEEECCeecCCCChHHHhhccceecccc-hhhhhhccCCceeEeeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALF----RIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL-ATIFVICYSTPVFIFVIV 287 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~----g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~-~~~~~~~~~~~~~~~~~~ 287 (602)
.+++|+|+||||||||+++|. |..+|..|.+..+...+.. ...+..+++++|++ ...+
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~-------------- 85 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKY-------------- 85 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEE--------------
Confidence 389999999999999999994 8888888876522211111 22345677777763 1110
Q ss_pred ccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH------HHHH
Q psy3001 288 PVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL------ICLA 361 (602)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr------l~lA 361 (602)
.....-++.+.+.. ..+ .+.... +......+| +||+|| +++|
T Consensus 86 -----------~v~r~~~~~~~~~~----~~~------~~~~~~---------~~~~~~~LS--~G~~~~~~la~rlala 133 (204)
T cd03240 86 -----------TITRSLAILENVIF----CHQ------GESNWP---------LLDMRGRCS--GGEKVLASLIIRLALA 133 (204)
T ss_pred -----------EEEEEhhHhhceee----ech------HHHHHH---------HhcCccccC--ccHHHHHHHHHHHHHH
Confidence 00000011111000 000 000111 123344566 599996 7899
Q ss_pred HHHhhCCCeEEEecccccCChhHHH-HHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeC
Q psy3001 362 RALLRKTKILILDEATAAIDLETDD-LIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 362 ral~~~p~iliLDEpts~LD~~~~~-~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
||++.+|++++|||||++||+.+.. .+.+.+++..+ +.|+|++||+++.+..||++++|++
T Consensus 134 ~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 134 ETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred HHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999999999999999999999 99999988754 6899999999998877999999964
No 417
>KOG0927|consensus
Probab=99.85 E-value=8.1e-22 Score=202.48 Aligned_cols=186 Identities=22% Similarity=0.300 Sum_probs=124.5
Q ss_pred CcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccc
Q psy3001 197 GEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLT 263 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~ 263 (602)
..+.++||+|.|.++ .+.+|+|||||+|||||+|++.|.+.|..|.|.-.-.. +++
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~~ 456 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KLP 456 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cch
Confidence 357899999998754 15699999999999999999999999999998654321 112
Q ss_pred eecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-ccc
Q psy3001 264 IIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYS 342 (602)
Q Consensus 264 ~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 342 (602)
+..|+...+. -.....-+.+ .+.... ..........+. ..++.. ...
T Consensus 457 ~y~Qh~~e~l---------------------------dl~~s~le~~-~~~~~~-~~~~e~~r~ilg---rfgLtgd~q~ 504 (614)
T KOG0927|consen 457 RYNQHLAEQL---------------------------DLDKSSLEFM-MPKFPD-EKELEEMRSILG---RFGLTGDAQV 504 (614)
T ss_pred hhhhhhHhhc---------------------------CcchhHHHHH-HHhccc-cchHHHHHHHHH---HhCCCccccc
Confidence 2222210000 0000000000 000000 000111112222 222221 111
Q ss_pred ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe
Q psy3001 343 HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
..-.+|| .|||.||+.||+.+++|.+|+|||||+|||.++...+.++|..+. .+||+||||...+.+ +++|++.+
T Consensus 505 ~p~~~LS--~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~ 580 (614)
T KOG0927|consen 505 VPMSQLS--DGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCE 580 (614)
T ss_pred cchhhcc--cccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhc
Confidence 2223566 699999999999999999999999999999999999999998764 489999999999999 99999999
Q ss_pred CceEEeec
Q psy3001 422 KGLVVEFD 429 (602)
Q Consensus 422 ~G~i~~~g 429 (602)
+|.+..+.
T Consensus 581 ~~~~~~~~ 588 (614)
T KOG0927|consen 581 NGTVTKWD 588 (614)
T ss_pred cCceeecC
Confidence 99987553
No 418
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.85 E-value=1.7e-20 Score=213.36 Aligned_cols=109 Identities=26% Similarity=0.348 Sum_probs=92.1
Q ss_pred HHHHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhhCC---CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEE
Q psy3001 329 LKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRKT---KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLT 403 (602)
Q Consensus 329 ~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~ 403 (602)
++.++.+++.. ..+....+|| |||+||++|||+|+++| +++||||||++||+.+...+.+.++++. +|.|||+
T Consensus 811 l~~L~~vgL~~l~l~~~~~tLS--gGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPATTLS--GGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred HHHHHHCCCCcccccCCcccCC--HHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34444555543 2445556677 69999999999999999 9999999999999999999999998874 4789999
Q ss_pred eeecccccccCCeEEEE------eCceEEeecChhHHhhcch
Q psy3001 404 IAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKA 439 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~ 439 (602)
|+|+++.+..||+|++| ++|+++..|+++++...+.
T Consensus 889 itH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 889 IEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99999999779999999 7999999999999876543
No 419
>KOG0062|consensus
Probab=99.85 E-value=1.2e-20 Score=192.76 Aligned_cols=185 Identities=17% Similarity=0.209 Sum_probs=135.6
Q ss_pred CCcEEEeeeEEEEecCC--------------ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhc
Q psy3001 196 KGEVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~--------------e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~ 261 (602)
...+++.+|+|.|.++. +.+++||+||+||||++|++.+-..|..|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 35789999999998862 34899999999999999999999999999998876 567
Q ss_pred cceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-c
Q psy3001 262 LTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-I 340 (602)
Q Consensus 262 i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 340 (602)
+++..|.-..++-.... .-+-.+.+ .... ...+....+..++.+. +
T Consensus 429 i~~f~Qhhvd~l~~~v~-----------------------~vd~~~~~-----~pG~-----~~ee~r~hl~~~Gl~g~l 475 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVN-----------------------AVDFMEKS-----FPGK-----TEEEIRRHLGSFGLSGEL 475 (582)
T ss_pred ecchhHhhhhHHHHHhH-----------------------HHHHHHHh-----CCCC-----CHHHHHHHHHhcCCCchh
Confidence 88887753322100000 00000000 0000 0111222333555543 3
Q ss_pred ccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEE
Q psy3001 341 YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLV 419 (602)
Q Consensus 341 ~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~ 419 (602)
..+.-.+|| ||||-||++|.+...+|.+|||||||++||.++-..+.++|+.+. ..||+|||+.+++.. |+.+++
T Consensus 476 a~~si~~LS--GGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wv 551 (582)
T KOG0062|consen 476 ALQSIASLS--GGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWV 551 (582)
T ss_pred hhccccccC--CcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEE
Confidence 333334566 699999999999999999999999999999999999999998764 479999999999998 999999
Q ss_pred EeCceEEee
Q psy3001 420 LDKGLVVEF 428 (602)
Q Consensus 420 l~~G~i~~~ 428 (602)
.++|++...
T Consensus 552 ve~g~vt~i 560 (582)
T KOG0062|consen 552 VEDGKVTPI 560 (582)
T ss_pred EcCCcEEee
Confidence 999999753
No 420
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.84 E-value=7.8e-21 Score=191.23 Aligned_cols=160 Identities=24% Similarity=0.412 Sum_probs=112.6
Q ss_pred CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccce
Q psy3001 212 LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSV 291 (602)
Q Consensus 212 ~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~ 291 (602)
+|+++++||||-||||++++|+|.++|++|. ..+ -.++|=||-....
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~------------------- 413 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPD------------------- 413 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCC-------------------
Confidence 3899999999999999999999999999997 111 1456666631110
Q ss_pred eeeccccceeecccccccccccccc-hhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCe
Q psy3001 292 LYFFIQVSLIFTEDVKPLIITPFCS-NLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKI 370 (602)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~i 370 (602)
++.++.+.+...... ....++. .+....+.+.+++...-..|| |||.||||||.||.+++++
T Consensus 414 ----------~~gtV~~~l~~~~~~~~~~s~~~-----~ei~~pl~l~~i~e~~v~~LS--GGELQRvaIaa~L~reADl 476 (591)
T COG1245 414 ----------YDGTVEDLLRSAIRSAFGSSYFK-----TEIVKPLNLEDLLERPVDELS--GGELQRVAIAAALSREADL 476 (591)
T ss_pred ----------CCCcHHHHHHHhhhhhcccchhH-----HhhcCccchHHHHhcccccCC--chhHHHHHHHHHhccccCE
Confidence 111111110000000 0000010 111123333444555556777 5999999999999999999
Q ss_pred EEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEe
Q psy3001 371 LILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 371 liLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
++||||+++||.+.+..+.+.+++... ++|.++|.||+..+.. +||++|.+
T Consensus 477 YllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 477 YLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred EEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999999999999999999998643 5899999999999998 99999986
No 421
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.84 E-value=1.7e-21 Score=187.75 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=65.8
Q ss_pred CcCCCChhhHHHHHHHHHHhh----CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEe
Q psy3001 346 ETVTGNVGQRQLICLARALLR----KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
..+| +|||||++||||++. +|++++|||||++||+.+..++.+.++++.++.|+|++||+.+....||++++|.
T Consensus 126 ~~lS--~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 126 SNLS--GGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred hhcC--HHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEE
Confidence 3455 699999999999974 5799999999999999999999999999877789999999976655699999996
Q ss_pred C
Q psy3001 422 K 422 (602)
Q Consensus 422 ~ 422 (602)
.
T Consensus 204 ~ 204 (212)
T cd03274 204 K 204 (212)
T ss_pred e
Confidence 3
No 422
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=2.1e-20 Score=185.21 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=66.6
Q ss_pred CcCCCChhhHHHHHHHHHHhhC----CCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeecccccccCCeEEEE
Q psy3001 346 ETVTGNVGQRQLICLARALLRK----TKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIIDSDRVLVL 420 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~----p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~~d~i~~l 420 (602)
..+| +|||||++||||++.+ |++++|||||++||+.+...+.+.+++..+ +.++|+|||+.+.+..||++++|
T Consensus 154 ~~LS--~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~ 231 (247)
T cd03275 154 DNLS--GGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGV 231 (247)
T ss_pred HHcC--HHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEE
Confidence 3455 6999999999999865 899999999999999999999999998754 78999999998887779999998
Q ss_pred eC
Q psy3001 421 DK 422 (602)
Q Consensus 421 ~~ 422 (602)
..
T Consensus 232 ~~ 233 (247)
T cd03275 232 YR 233 (247)
T ss_pred Ee
Confidence 63
No 423
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.83 E-value=1.2e-20 Score=184.12 Aligned_cols=121 Identities=61% Similarity=0.986 Sum_probs=109.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++|+||+|.+|..|+++|+.
T Consensus 20 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~ 99 (221)
T cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLD 99 (221)
T ss_pred ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhC
Confidence 45799999999999999999999999999999999999999999999998877778888999999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+......+++.++++.+++.++..++|.++++.+...+.+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~L 140 (221)
T cd03244 100 PFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENL 140 (221)
T ss_pred cCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcC
Confidence 66555677899999999999999999999999887766554
No 424
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.83 E-value=8.6e-21 Score=209.85 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=104.8
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||++++..+..++|+.++||+|||++|++|+++|+.
T Consensus 358 l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~ 437 (555)
T TIGR01194 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG 437 (555)
T ss_pred eccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccccccCCCcc
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPARLQHE 594 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~ 594 (602)
+..++++++++++.++++++++++|+||||.
T Consensus 438 --~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 468 (555)
T TIGR01194 438 --EHASLDNAQQYLQRLEIADKVKIEDGGFSTT 468 (555)
T ss_pred --cchhHHHHHHHHHHcCCchhhcccccccCCc
Confidence 3467889999999999999999999999986
No 425
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.83 E-value=1.9e-20 Score=186.92 Aligned_cols=121 Identities=54% Similarity=0.900 Sum_probs=109.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++|+||+|.+|++|+++|+.
T Consensus 37 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~ 116 (257)
T cd03288 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLD 116 (257)
T ss_pred eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcC
Confidence 45799999999999999999999999999999999999999999999998888888889999999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+......++++++++.+++.++++.+|.++++.++..+.+|
T Consensus 117 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~L 157 (257)
T cd03288 117 PECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENF 157 (257)
T ss_pred cCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcC
Confidence 65444566788999999999999999999999888776654
No 426
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.82 E-value=9.3e-21 Score=170.32 Aligned_cols=121 Identities=24% Similarity=0.307 Sum_probs=99.9
Q ss_pred HHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh---hhccceEe
Q psy3001 469 AALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTII 545 (602)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~---lr~~i~~V 545 (602)
.++..|..+ ...+.++||++.+||.+-++||+|||||||+|+|++..+|++|+|+++|+|+.+++.++ +|++||+|
T Consensus 6 ~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvV 84 (223)
T COG2884 6 NVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVV 84 (223)
T ss_pred hhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeE
Confidence 344444433 44566899999999999999999999999999999999999999999999999988665 69999999
Q ss_pred cCCcccccc-chhcccCCC----CC---CcHHHHHHHHHHcCCCccccccccC
Q psy3001 546 PQDPVLFSG-TLRLNLDPV----GE---SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 546 ~Qdp~lf~~-Tv~~nl~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+||.-|+.+ ||.+|..+. +. .-.+++.++|+++||.+....+|..
T Consensus 85 FQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~ 137 (223)
T COG2884 85 FQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQ 137 (223)
T ss_pred eeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccc
Confidence 999988765 999998632 12 2346799999999999877766653
No 427
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=4.8e-20 Score=209.34 Aligned_cols=104 Identities=25% Similarity=0.340 Sum_probs=87.0
Q ss_pred HHHHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhh---CCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEE
Q psy3001 329 LKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLR---KTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLT 403 (602)
Q Consensus 329 ~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~---~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~ 403 (602)
++.+..+++.. .......++| +||+||++|||+|++ +|+++||||||++||+.....+.+.++++. ++.|+|+
T Consensus 809 l~~L~~~gL~~l~l~~~~~tLS--gGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 809 LQTLCDVGLGYIKLGQPATTLS--GGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHcCCCchhhcCccccCC--HHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34444445433 2345556677 699999999999997 599999999999999999999999998875 4789999
Q ss_pred eeecccccccCCeEEEE------eCceEEeecChhHH
Q psy3001 404 IAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVL 434 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l 434 (602)
|+|+++.+..||++++| ++|+++..|+++++
T Consensus 887 i~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 887 IEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999779999999 79999999988764
No 428
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.82 E-value=1.1e-20 Score=177.37 Aligned_cols=116 Identities=30% Similarity=0.424 Sum_probs=100.8
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||+|..||.+.++||+||||||++|+|.|+++|++|+|+++|++++.++..++|++||||-|..-||+. ||.+||
T Consensus 17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNI 96 (309)
T COG1125 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI 96 (309)
T ss_pred eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHH
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999987 999999
Q ss_pred CCC---CCCc----HHHHHHHHHHcCCCccccccccCCCccccCCC
Q psy3001 561 DPV---GESS----DEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599 (602)
Q Consensus 561 ~~~---~~~~----~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G 599 (602)
... .+++ ++++.+.++++||+. ...-++||+++++|-
T Consensus 97 a~VP~L~~w~k~~i~~r~~ELl~lvgL~p--~~~~~RyP~eLSGGQ 140 (309)
T COG1125 97 ATVPKLLGWDKERIKKRADELLDLVGLDP--SEYADRYPHELSGGQ 140 (309)
T ss_pred HhhhhhcCCCHHHHHHHHHHHHHHhCCCH--HHHhhcCchhcCcch
Confidence 632 2233 456889999999975 234457888887664
No 429
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.82 E-value=1.9e-20 Score=188.25 Aligned_cols=109 Identities=25% Similarity=0.339 Sum_probs=96.3
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.+.++||++..||.++++|||||||||||++|+|+.+|++|+|.|||++++..++.+ |+|++|||++.||+. ||++|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEEEeCCccccCCCcHHHH
Confidence 455799999999999999999999999999999999999999999999999998874 689999999999988 99999
Q ss_pred cCCCCC-------CcHHHHHHHHHHcCCCccccccccCC
Q psy3001 560 LDPVGE-------SSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 560 l~~~~~-------~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
+.+.-+ .-++++.++++.+++.++.++.|..|
T Consensus 96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~L 134 (338)
T COG3839 96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL 134 (338)
T ss_pred hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccC
Confidence 974322 23577999999999999888776543
No 430
>KOG0064|consensus
Probab=99.82 E-value=1.5e-17 Score=170.06 Aligned_cols=186 Identities=21% Similarity=0.298 Sum_probs=122.2
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
.+.+.+.+++|.+.+| ..+.|+||||||||+|.++|.|++|...|...+-- +.+|.|+||-
T Consensus 493 ~~~vvv~~Ltf~i~~G-~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQR------- 553 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPG-MHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQR------- 553 (728)
T ss_pred CcceeecceeEEecCC-ceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCC-------
Confidence 3567788888998887 88999999999999999999999999888876532 3458999997
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHH--HHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRF--YVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
|++...+.- ..+.+.++.++...-... .++... .......++ ..+.-..+....+.|| |
T Consensus 554 ----PYms~gtlR---------DQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~q---r~~g~da~~dWkd~Ls--g 615 (728)
T KOG0064|consen 554 ----PYMSGGTLR---------DQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQ---REGGWDAVRDWKDVLS--G 615 (728)
T ss_pred ----CccCcCccc---------ceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHH---hccChhhhccHHhhcc--c
Confidence 433311111 111111111111000000 000000 001111111 1111112344455677 5
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL 420 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l 420 (602)
|+|||+++||.++++|+.-+|||.||+.-++.+..+.+..+. .|.+.+.||||++.+..-..++..
T Consensus 616 GekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~--~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 616 GEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD--AGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred hHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh--cCceEEEeecCccHHHHHHHHHhc
Confidence 999999999999999999999999999999999999888766 478999999999988654444333
No 431
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.82 E-value=5.2e-20 Score=175.58 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=70.5
Q ss_pred ccccCCcCCCChhhHHHHHHHHHH----hhCCCeEEEecccccCChhHHHHHHHHHHHhc-c---ccEEEEeeecccccc
Q psy3001 341 YSHFGETVTGNVGQRQLICLARAL----LRKTKILILDEATAAIDLETDDLIQSTIRSEF-A---HCTVLTIAHRLNTII 412 (602)
Q Consensus 341 ~~~~~~~lsgs~Gq~Qrl~lAral----~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~---~~tvi~itH~l~~i~ 412 (602)
......++| +|||||++||+|+ +.+|+++||||||++||+.+...+.+.|++.. + ++|+++++|+++.+.
T Consensus 103 ~~~~~~~lS--~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 103 AVRDVKTLS--GGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLA 180 (198)
T ss_pred cCCcccccC--hhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccc
Confidence 344555677 6999999999999 58999999999999999999999999888753 2 368999999999999
Q ss_pred cCCeEEEEeCce
Q psy3001 413 DSDRVLVLDKGL 424 (602)
Q Consensus 413 ~~d~i~~l~~G~ 424 (602)
.+|+|.+|+.++
T Consensus 181 ~~d~v~~~~~~~ 192 (198)
T cd03276 181 SSDDVKVFRMKD 192 (198)
T ss_pred cccceeEEEecC
Confidence 999999998643
No 432
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.81 E-value=2.3e-20 Score=171.79 Aligned_cols=113 Identities=28% Similarity=0.359 Sum_probs=93.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC-CChhhhhccceEecCCcccccc-chhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-LGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~-~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
++++|+++.+||+++|+||+|||||||++||.|+.+|++|+|.+||.++.. .....+|+++|+|+|+..||+. ||-+|
T Consensus 18 Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleN 97 (240)
T COG1126 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLEN 97 (240)
T ss_pred ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHH
Confidence 457999999999999999999999999999999999999999999987743 3677899999999999999987 99999
Q ss_pred cCCC----CC----CcHHHHHHHHHHcCCCccccccccCCCccccCC
Q psy3001 560 LDPV----GE----SSDEAIWKALELAHLNTFVSNLPARLQHEVSEG 598 (602)
Q Consensus 560 l~~~----~~----~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~ 598 (602)
+... .+ ...+...+.|+++||.+..+ .||..+++|
T Consensus 98 v~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~----~yP~qLSGG 140 (240)
T COG1126 98 VTLAPVKVKKLSKAEAREKALELLEKVGLADKAD----AYPAQLSGG 140 (240)
T ss_pred HHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhh----hCccccCcH
Confidence 8522 11 12344778899999988655 466666554
No 433
>KOG0065|consensus
Probab=99.81 E-value=1.4e-18 Score=195.91 Aligned_cols=207 Identities=21% Similarity=0.268 Sum_probs=141.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC---CCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP---ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~---~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|++.-.++| +.+.+.|+.|||||||+++++|-.+- ..|+|.+||.+.++..+ ++.++|.+|.
T Consensus 129 ~il~~~sg~~~pg-~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~------- 197 (1391)
T KOG0065|consen 129 QILKDISGIIKPG-EMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQ------- 197 (1391)
T ss_pred eeecCcceeEcCC-ceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccc-------
Confidence 4789999999998 99999999999999999999998864 35799999999988776 7889999996
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHH-HH--HHHHHHHHHhhcccC----Ccccc-cCCc
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF-YV--ATSRQLKRLESVSRS----PIYSH-FGET 347 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~----~~~~~-~~~~ 347 (602)
.+.+..... ..++-+...-+. ......+..+. +. ..+..++ .++++ .+++. ....
T Consensus 198 ----DvH~p~lTV--------reTldFa~rck~--~~~r~~~~~R~e~~~~~~d~~lk---ilGL~~~~dT~VGnd~~RG 260 (1391)
T KOG0065|consen 198 ----DVHFPELTV--------RETLDFAARCKG--PGSRYDEVSRREKLAAMTDYLLK---ILGLDHCADTLVGNDMVRG 260 (1391)
T ss_pred ----ccccceeEE--------eehhhHHHhccC--CccccccccHHHHHHHHHHHHHH---HhCchhhccceeccccccc
Confidence 222210000 001000000000 00001111111 11 1122222 23332 22222 2233
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccc-ccc-CCeEEEEeCc
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNT-IID-SDRVLVLDKG 423 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~-i~~-~d~i~~l~~G 423 (602)
.| ||||.||.+|-+++.+++++.+||+|.+||..|.-++.+.++...+ +.|.++.=|..+. +-+ .|.|++|.+|
T Consensus 261 vS--GGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG 338 (1391)
T KOG0065|consen 261 VS--GGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEG 338 (1391)
T ss_pred cc--CcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeecc
Confidence 44 6999999999999999999999999999999999999999998754 5677777676543 444 8999999999
Q ss_pred eEEeecChhHHh
Q psy3001 424 LVVEFDSPSVLM 435 (602)
Q Consensus 424 ~i~~~g~~~~l~ 435 (602)
+++-+|+.++.+
T Consensus 339 ~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 339 YQIYQGPRDEVL 350 (1391)
T ss_pred ceEEeccHHHHH
Confidence 999998866654
No 434
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.81 E-value=3.5e-20 Score=187.35 Aligned_cols=113 Identities=26% Similarity=0.375 Sum_probs=96.8
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRL 558 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~ 558 (602)
..+.++||+|++||.++++|||||||||||++|+|+..|++|+|.++|+++...|++ +|.|++|+|+.-||+. ||++
T Consensus 19 ~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~VFQ~YALFPHltV~~ 96 (352)
T COG3842 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEE 96 (352)
T ss_pred eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccceeecCcccCCCCcHHH
Confidence 345679999999999999999999999999999999999999999999999998887 6789999999999987 9999
Q ss_pred ccCCCCC----C----cHHHHHHHHHHcCCCccccccccCCCccccCC
Q psy3001 559 NLDPVGE----S----SDEAIWKALELAHLNTFVSNLPARLQHEVSEG 598 (602)
Q Consensus 559 nl~~~~~----~----~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~ 598 (602)
|+.++-+ . .++++.++|+.++|.++.. ++++++++|
T Consensus 97 NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~----R~p~qLSGG 140 (352)
T COG3842 97 NVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD----RKPHQLSGG 140 (352)
T ss_pred HhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh----hChhhhChH
Confidence 9864322 2 2347999999999998665 455566554
No 435
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.80 E-value=7.9e-20 Score=176.95 Aligned_cols=108 Identities=30% Similarity=0.470 Sum_probs=91.2
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRL 558 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~ 558 (602)
..++++||++++||+++|+||||||||||+|+|+|+++|.+|+|.+||+++.+++..++.++++||||.+.. |.-||++
T Consensus 16 ~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d 95 (258)
T COG1120 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE 95 (258)
T ss_pred eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEee
Confidence 345679999999999999999999999999999999999999999999999999999999999999999744 5558876
Q ss_pred ccC----C----CCCC---cHHHHHHHHHHcCCCcccccc
Q psy3001 559 NLD----P----VGES---SDEAIWKALELAHLNTFVSNL 587 (602)
Q Consensus 559 nl~----~----~~~~---~~~~i~~al~~~~l~~~~~~~ 587 (602)
-.. | .... +.+.+.++|+.+++.++.++.
T Consensus 96 ~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~ 135 (258)
T COG1120 96 LVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP 135 (258)
T ss_pred hHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc
Confidence 542 1 1212 223588999999999887754
No 436
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.80 E-value=1.2e-19 Score=179.00 Aligned_cols=121 Identities=33% Similarity=0.503 Sum_probs=104.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++|+||++.+|..||++|+.
T Consensus 18 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~ 97 (237)
T cd03252 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIA 97 (237)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhh
Confidence 45799999999999999999999999999999999999999999999988777777788999999999999999999997
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ..+.+++.++++..++.++++++|.++++.+...+.+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~L 139 (237)
T cd03252 98 LADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGL 139 (237)
T ss_pred ccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcC
Confidence 533 23456678888889999999999888887766555443
No 437
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.80 E-value=1.7e-19 Score=177.69 Aligned_cols=120 Identities=28% Similarity=0.453 Sum_probs=103.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.+++|++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...++++++|+||+|.+|..|+++|+.
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~ 97 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIA 97 (234)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhh
Confidence 45799999999999999999999999999999999999999999999988777777788999999999999999999997
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
... ....+++.+.++.+++.++.+.+|.++++.++....+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 138 (234)
T cd03251 98 YGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVK 138 (234)
T ss_pred ccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCc
Confidence 542 2355677888888999999998888888776655443
No 438
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=1.3e-19 Score=177.97 Aligned_cols=120 Identities=36% Similarity=0.562 Sum_probs=104.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.+++|++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++|+||+|.+|.+|+++|+.
T Consensus 19 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~ 98 (229)
T cd03254 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIR 98 (229)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHh
Confidence 44799999999999999999999999999999999999999999999988777777888999999999999999999997
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
... ....+++.++++.+++.++.+++|.++++.++....+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (229)
T cd03254 99 LGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGN 139 (229)
T ss_pred ccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCc
Confidence 543 2356678889999999999999998888776554433
No 439
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=1.2e-19 Score=175.59 Aligned_cols=116 Identities=28% Similarity=0.364 Sum_probs=97.2
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh---hhhhccceEecCCccccc-cc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQDPVLFS-GT 555 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~---~~lr~~i~~V~Qdp~lf~-~T 555 (602)
..++++||+|++||+.||+|++|||||||++++.++.+|++|+|.+||+|+..++. +++|++||+|+|.+.|++ .|
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrT 99 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRT 99 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccch
Confidence 34567999999999999999999999999999999999999999999999987764 567889999999999997 79
Q ss_pred hhcccCCC---CCC----cHHHHHHHHHHcCCCccccccccCCCccccCCC
Q psy3001 556 LRLNLDPV---GES----SDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599 (602)
Q Consensus 556 v~~nl~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G 599 (602)
|.+|+.+. ... -.+++.+.|+.+||.++.+ .||.++++|.
T Consensus 100 V~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~----~yP~qLSGGQ 146 (339)
T COG1135 100 VFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD----RYPAQLSGGQ 146 (339)
T ss_pred HHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc----cCchhcCcch
Confidence 99998632 112 2356889999999997654 5777776653
No 440
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.79 E-value=2e-19 Score=177.38 Aligned_cols=120 Identities=33% Similarity=0.549 Sum_probs=105.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++|+++||+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++|+||+|.+|+.|+++|+.
T Consensus 17 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~ 96 (236)
T cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIR 96 (236)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHh
Confidence 45799999999999999999999999999999999999999999999998877777888999999999999999999996
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
.. ...+++++.++++.+++.+..+.+|.++++.+.....+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 137 (236)
T cd03253 97 YGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLK 137 (236)
T ss_pred hcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCc
Confidence 43 23456678888999999999899998888877655544
No 441
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.79 E-value=2.5e-19 Score=174.77 Aligned_cols=120 Identities=38% Similarity=0.594 Sum_probs=103.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++|+++||+|+||||||||+++|+|+.+|++|+|.++|.++...+...++++++|+||+|.+|..|+++|+.
T Consensus 20 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~ 99 (220)
T cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNIT 99 (220)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhh
Confidence 45799999999999999999999999999999999999999999999987777666778899999999998889999986
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
... ..+.+++.++++.+++.+..+++|.++++.+.....+
T Consensus 100 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 140 (220)
T cd03245 100 LGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRG 140 (220)
T ss_pred cCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCcc
Confidence 432 2345678889999999999999999898876655443
No 442
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.79 E-value=3.2e-19 Score=156.91 Aligned_cols=103 Identities=28% Similarity=0.385 Sum_probs=93.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++||.++|+||+|||||||+|+++-+..|++|++.+.|++++..++.++|.+|+|+.|.|.||.+||.+|+-
T Consensus 19 l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNli 98 (223)
T COG4619 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLI 98 (223)
T ss_pred ecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccc
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C-C----CCCcHHHHHHHHHHcCCCccc
Q psy3001 562 P-V----GESSDEAIWKALELAHLNTFV 584 (602)
Q Consensus 562 ~-~----~~~~~~~i~~al~~~~l~~~~ 584 (602)
+ . ...+.+...+.++++++.+.+
T Consensus 99 fP~~~r~rr~dr~aa~~llar~~l~~~~ 126 (223)
T COG4619 99 FPWQIRNRRPDRAAALDLLARFALPDSI 126 (223)
T ss_pred cchHHhccCCChHHHHHHHHHcCCchhh
Confidence 2 1 223556788899999998753
No 443
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.79 E-value=2.4e-19 Score=173.62 Aligned_cols=111 Identities=29% Similarity=0.442 Sum_probs=97.1
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC-CCChhhhhccceEecCCc--cccccchh
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR-TLGLHTLRSRLTIIPQDP--VLFSGTLR 557 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~-~~~~~~lr~~i~~V~Qdp--~lf~~Tv~ 557 (602)
.+.++||++.+||.++|+|+||||||||+++|.|+++|++|+|.++|.+++ ..+..++|+++|||+||| ++|..||.
T Consensus 19 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~ 98 (235)
T COG1122 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVE 98 (235)
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHH
Confidence 345799999999999999999999999999999999999999999999988 477889999999999999 89999999
Q ss_pred cccCCCCC---Cc----HHHHHHHHHHcCCCccccccccCC
Q psy3001 558 LNLDPVGE---SS----DEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 558 ~nl~~~~~---~~----~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
+++.+... .+ ++++.++|+.+++.++.++.|+.|
T Consensus 99 ~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~L 139 (235)
T COG1122 99 DEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNL 139 (235)
T ss_pred HHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcccc
Confidence 99864422 12 345899999999999988777654
No 444
>KOG0065|consensus
Probab=99.78 E-value=6.2e-20 Score=206.75 Aligned_cols=201 Identities=21% Similarity=0.286 Sum_probs=142.3
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC--CCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE--PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~--~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
++||+=-+.|| -.+||+|+||||||||+++|+|=.. ..+|+|.++|.+..+ ...++.+|||.|+....
T Consensus 807 L~~V~G~~kPG-~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~------ 876 (1391)
T KOG0065|consen 807 LNNVSGAFKPG-VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHS------ 876 (1391)
T ss_pred hhcCceEecCC-ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccC------
Confidence 44444444444 6799999999999999999999754 358999999998764 67889999999962211
Q ss_pred CceeEeeecccceeeeccccceeecccc--cccccccccchhHHHHHHHHHHHHHHhhc-ccCCcccccCCcCCCChhhH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDV--KPLIITPFCSNLQRFYVATSRQLKRLESV-SRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~lsgs~Gq~ 355 (602)
| +.+ ..|++ .+.+..+......+..+-.++..+.++.. ..+.+++..|..|| ..||
T Consensus 877 -~----------------~~T--VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs--~eQR 935 (1391)
T KOG0065|consen 877 -P----------------ELT--VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLS--TEQR 935 (1391)
T ss_pred -c----------------ccc--hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCC--HHHh
Confidence 0 111 11111 11111112222223333333444443321 12346777777777 5999
Q ss_pred HHHHHHHHHhhCC-CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccc-c-cCCeEEEEe-CceEEeecC
Q psy3001 356 QLICLARALLRKT-KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTI-I-DSDRVLVLD-KGLVVEFDS 430 (602)
Q Consensus 356 Qrl~lAral~~~p-~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i-~-~~d~i~~l~-~G~i~~~g~ 430 (602)
.|+.||=-|+.+| .||+||||||+||.+++..+.+.++++. .|+||+..=|.++-. . ..|+++.|+ .|+.+-+|+
T Consensus 936 KrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~ 1015 (1391)
T KOG0065|consen 936 KRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGP 1015 (1391)
T ss_pred ceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecC
Confidence 9999999999999 8999999999999999999999999975 589999999999864 3 489999996 577787776
Q ss_pred hh
Q psy3001 431 PS 432 (602)
Q Consensus 431 ~~ 432 (602)
..
T Consensus 1016 lG 1017 (1391)
T KOG0065|consen 1016 LG 1017 (1391)
T ss_pred cc
Confidence 43
No 445
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.78 E-value=2.3e-19 Score=160.06 Aligned_cols=105 Identities=30% Similarity=0.385 Sum_probs=92.4
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcccCCC
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLDPV 563 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~~~ 563 (602)
.+++|..||+|||+||+|||||||+++++|+..|.+|+|+|+|+|....++. ++-+++++|+..||.. ||..|+..+
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhhhhhccccchhhhhhhhhccc
Confidence 6889999999999999999999999999999999999999999999887765 4469999999999998 999998632
Q ss_pred ----CC---CcHHHHHHHHHHcCCCccccccccCC
Q psy3001 564 ----GE---SSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 564 ----~~---~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
-+ ..++++..++.++||.++.+++|..|
T Consensus 96 l~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L 130 (231)
T COG3840 96 LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130 (231)
T ss_pred CCcccccCHHHHHHHHHHHHHhChhhHhhhCcccc
Confidence 22 24567999999999999999887754
No 446
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=3.2e-19 Score=169.34 Aligned_cols=104 Identities=25% Similarity=0.314 Sum_probs=87.6
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.++++||++.+||.|+|+||+|||||||+++++|+.+|++|+|.++|+++... ...++||+|++.||+= ||++|
T Consensus 18 vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~vFQ~~~LlPW~Tv~~N 92 (248)
T COG1116 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDN 92 (248)
T ss_pred EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEEEeccCcccchhhHHhh
Confidence 45679999999999999999999999999999999999999999999877332 4579999999999974 99999
Q ss_pred cCCC-------CCCcHHHHHHHHHHcCCCcccccccc
Q psy3001 560 LDPV-------GESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 560 l~~~-------~~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+... .....+.+.++|+.+||.+|-++.|+
T Consensus 93 V~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~ 129 (248)
T COG1116 93 VALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH 129 (248)
T ss_pred heehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc
Confidence 8532 11234569999999999988775444
No 447
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.78 E-value=4.8e-19 Score=172.49 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=100.4
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh----hhhhccceEecCCccccccch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTLRSRLTIIPQDPVLFSGTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~----~~lr~~i~~V~Qdp~lf~~Tv 556 (602)
.++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+. ...|+.++|+||+|.+|..|+
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~ 95 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATV 95 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccH
Confidence 3457999999999999999999999999999999999999999999998765432 234678999999999998899
Q ss_pred hcccCCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 557 RLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 557 ~~nl~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
++|+.......+++.+++++.+++.+..+.+|.++++.++....+
T Consensus 96 ~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 140 (218)
T cd03290 96 EENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGIN 140 (218)
T ss_pred HHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCc
Confidence 999975434456667888999999888888888877766554433
No 448
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.78 E-value=4.2e-19 Score=175.37 Aligned_cols=120 Identities=35% Similarity=0.581 Sum_probs=101.7
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++|+||+|.+|+.||++|+
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 97 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI 97 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHh
Confidence 34579999999999999999999999999999999999999999999998877766677789999999999989999998
Q ss_pred CCCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCC
Q psy3001 561 DPVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600 (602)
Q Consensus 561 ~~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~ 600 (602)
.... ....+++.+.++..++.++...+|.++++.+.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 138 (238)
T cd03249 98 RYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGS 138 (238)
T ss_pred hccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCc
Confidence 7532 234566778888889988888888887776554433
No 449
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.78 E-value=3.6e-18 Score=175.15 Aligned_cols=212 Identities=25% Similarity=0.358 Sum_probs=151.5
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec-CCCChHHHh-hccceecccchhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI-RTLGLHTLR-SRLTIIPQVLATIFV 274 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~-~~~~~~~~~-~~i~~v~Q~~~~~~~ 274 (602)
+...++++||..+.| |++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|.++ ..+++..++ ..+++||.+.--.-.
T Consensus 270 ~~~~v~~vs~~Vr~G-EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Gl 348 (501)
T COG3845 270 GVTAVKDVSFEVRAG-EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGL 348 (501)
T ss_pred CCceeeeeeeEEecC-cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcc
Confidence 356799999999998 99999999999999999999999999999999999997 666777665 579999987311000
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccc----ccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL----IITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg 350 (602)
+ + ..++.+|--+... +......+.........+..+.++-...++ ...-.+||
T Consensus 349 v----~----------------~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~--~~~a~~LS- 405 (501)
T COG3845 349 V----L----------------DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP--DAPARSLS- 405 (501)
T ss_pred c----c----------------CccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC--CcchhhcC-
Confidence 0 0 1111111000000 000001111222223333334332111111 11223455
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
||.+||+-+||-|.++|++||..+||.+||..+.+.+.+.|.+.+ +|+.|++||-+++++.. ||||.||.+|+++..
T Consensus 406 -GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 406 -GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred -CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 699999999999999999999999999999999999999887764 57999999999999998 999999999999877
Q ss_pred cChhH
Q psy3001 429 DSPSV 433 (602)
Q Consensus 429 g~~~~ 433 (602)
.++++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 66654
No 450
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.78 E-value=5.1e-19 Score=167.91 Aligned_cols=114 Identities=28% Similarity=0.375 Sum_probs=92.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---hh-hccceEecCCcccccc-ch
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TL-RSRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~---~l-r~~i~~V~Qdp~lf~~-Tv 556 (602)
+.++||+|++||.|+|+||+|||||||+++|.|+.+|++|+|.++|+|+...+.. .+ |+.||||+|+..|++. ||
T Consensus 21 L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv 100 (226)
T COG1136 21 LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTV 100 (226)
T ss_pred cccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCH
Confidence 4579999999999999999999999999999999999999999999999988743 34 4569999999999876 99
Q ss_pred hcccC----CCCC---CcHHHHHHHHHHcCCCccccccccCCCccccCC
Q psy3001 557 RLNLD----PVGE---SSDEAIWKALELAHLNTFVSNLPARLQHEVSEG 598 (602)
Q Consensus 557 ~~nl~----~~~~---~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~ 598 (602)
.+|+. .... ...+.+.+.++.+||.+... +.+++++++|
T Consensus 101 ~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~---~~~p~eLSGG 146 (226)
T COG1136 101 LENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL---KKKPSELSGG 146 (226)
T ss_pred HHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc---cCCchhcCHH
Confidence 99985 2222 23556888999999986443 2355555543
No 451
>KOG0066|consensus
Probab=99.78 E-value=5.9e-19 Score=176.20 Aligned_cols=181 Identities=24% Similarity=0.306 Sum_probs=118.5
Q ss_pred cEEEeeeEEEEecCC-------------ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccce
Q psy3001 198 EVEFKDYKVRYREGL-------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 264 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~-------------e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~ 264 (602)
.+-+.||+|.|+... ..+|||||||.|||||+++|.|-++|..|+..-+- |-+||+
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG~ 654 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIGW 654 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeeec
Confidence 355778888875421 56999999999999999999999999999876543 446777
Q ss_pred ecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCccccc
Q psy3001 265 IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHF 344 (602)
Q Consensus 265 v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (602)
..|...-... -.++..+.+. ...++ -+..+...+.++....... +-.
T Consensus 655 FdQh~~E~L~---------------------------~Eetp~EyLq--r~FNl--pyq~ARK~LG~fGL~sHAH--Tik 701 (807)
T KOG0066|consen 655 FDQHANEALN---------------------------GEETPVEYLQ--RKFNL--PYQEARKQLGTFGLASHAH--TIK 701 (807)
T ss_pred hhhhhHHhhc---------------------------cccCHHHHHH--HhcCC--ChHHHHHHhhhhhhhhccc--eEe
Confidence 7775221110 0000000000 00000 0222222233221111000 001
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCC-eEEEEeCc
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSD-RVLVLDKG 423 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d-~i~~l~~G 423 (602)
...|| ||||-||++|-.-+..|+||||||||++||.++...+.++|+.+. ..||+|||+-..+...| ..+|+++-
T Consensus 702 ikdLS--GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 702 IKDLS--GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQ 777 (807)
T ss_pred eeecC--CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccC
Confidence 12355 699999999999999999999999999999999999999998864 47999999999987743 35666665
Q ss_pred eEE
Q psy3001 424 LVV 426 (602)
Q Consensus 424 ~i~ 426 (602)
.|-
T Consensus 778 ~i~ 780 (807)
T KOG0066|consen 778 GID 780 (807)
T ss_pred Chh
Confidence 543
No 452
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.78 E-value=3.9e-19 Score=171.17 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=87.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc---cccccchh
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP---VLFSGTLR 557 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp---~lf~~Tv~ 557 (602)
.++++||++++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+.+.... +.+||||||.. +-|+-||+
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgYVPQ~~~~d~~fP~tV~ 95 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGYVPQKSSVDRSFPITVK 95 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEEcCcccccCCCCCcCHH
Confidence 4568999999999999999999999999999999999999999999987655432 46899999966 34888998
Q ss_pred cccCCC-----------CCCcHHHHHHHHHHcCCCcccccccc
Q psy3001 558 LNLDPV-----------GESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~-----------~~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+-...+ .+.+.+++.+||+++|+.++.++.-+
T Consensus 96 d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~ 138 (254)
T COG1121 96 DVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG 138 (254)
T ss_pred HHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc
Confidence 754321 12235789999999999998876544
No 453
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.78 E-value=5.8e-19 Score=170.02 Aligned_cols=109 Identities=30% Similarity=0.377 Sum_probs=96.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||+++|+|+||||||||+++|+|+++|++|+|.++| +++|+||+|.+|+.|+++|+
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~i~~~~q~~~l~~~t~~enl 86 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPWIQNGTIRENI 86 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------EEEEEecCchhccCcHHHHh
Confidence 34579999999999999999999999999999999999999999998 69999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.+.....+++.+++++.+++.+++..+|.++++.+...+.+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 128 (204)
T cd03250 87 LFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINL 128 (204)
T ss_pred ccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcC
Confidence 875445566788899999999999999988888777665543
No 454
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.77 E-value=4.6e-20 Score=167.11 Aligned_cols=108 Identities=26% Similarity=0.415 Sum_probs=91.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh-hhccceEecCCcccccc-chhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
+..+||++++||+||+.|||||||||.+.++.|+.+|++|+|.+||.||+..|... .|..|||.||+|..|-+ ||++|
T Consensus 20 v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dN 99 (243)
T COG1137 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDN 99 (243)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHH
Confidence 34799999999999999999999999999999999999999999999999999865 47789999999999976 99999
Q ss_pred cCC----CC---C--CcHHHHHHHHHHcCCCcccccccc
Q psy3001 560 LDP----VG---E--SSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 560 l~~----~~---~--~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
|.. .. + .+.+++.+.|+.+++.+...+...
T Consensus 100 i~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~ 138 (243)
T COG1137 100 IMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY 138 (243)
T ss_pred HHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccc
Confidence 842 11 1 233457799999999887665433
No 455
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.77 E-value=5.1e-19 Score=173.29 Aligned_cols=120 Identities=28% Similarity=0.438 Sum_probs=97.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.+++|++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+....+++++|+||+|.+|..||++|+.
T Consensus 30 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~ 109 (226)
T cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIA 109 (226)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhc
Confidence 44699999999999999999999999999999999999999999999887776667788899999999999999999997
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
... ....+++.+..+..++.++++.+|.++++.+.....+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~ 150 (226)
T cd03248 110 YGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQ 150 (226)
T ss_pred cccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCc
Confidence 432 2334445555566677777777776676665554443
No 456
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.77 E-value=6.5e-19 Score=194.84 Aligned_cols=101 Identities=22% Similarity=0.320 Sum_probs=93.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++|+++||+|+||||||||+++|+|+++|++|+|.+||++++..+.+++|++++||||||.+|++|+++|
T Consensus 339 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-- 416 (547)
T PRK10522 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-- 416 (547)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc--
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHcCCCcccc
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVS 585 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~ 585 (602)
....++++++++++.+++.++.+
T Consensus 417 -~~~~~~~~~~~~~~~~~l~~~~~ 439 (547)
T PRK10522 417 -GKPANPALVEKWLERLKMAHKLE 439 (547)
T ss_pred -cCchHHHHHHHHHHHcCCchhhh
Confidence 23567888999999999987655
No 457
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.77 E-value=3.6e-19 Score=184.19 Aligned_cols=110 Identities=27% Similarity=0.350 Sum_probs=94.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh----hccceEecCCcccccc-c
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQDPVLFSG-T 555 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l----r~~i~~V~Qdp~lf~~-T 555 (602)
.+.++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...++.++ |++++||||++.+|+. |
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T 87 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT 87 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence 3457999999999999999999999999999999999999999999999998887766 7789999999999975 9
Q ss_pred hhcccCCC---CCC----cHHHHHHHHHHcCCCccccccccC
Q psy3001 556 LRLNLDPV---GES----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 556 v~~nl~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
|++|+... ... ..+++.++++.++|.++.++.|..
T Consensus 88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~ 129 (363)
T TIGR01186 88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDE 129 (363)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhh
Confidence 99998532 111 245688999999998887776654
No 458
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.77 E-value=6e-19 Score=165.03 Aligned_cols=115 Identities=30% Similarity=0.419 Sum_probs=94.2
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---hhhccceEecCCcccccc-ch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~---~lr~~i~~V~Qdp~lf~~-Tv 556 (602)
.+++++|+|++||++||+|++|||||||+|+|.|+++|++|+|+++|+|+...+.. ++|+++|+++|.--||+. ||
T Consensus 23 Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV 102 (263)
T COG1127 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTV 102 (263)
T ss_pred EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccch
Confidence 35579999999999999999999999999999999999999999999999988854 569999999999999987 99
Q ss_pred hcccCC-C---CCCcHHH----HHHHHHHcCCCccccccccCCCccccCC
Q psy3001 557 RLNLDP-V---GESSDEA----IWKALELAHLNTFVSNLPARLQHEVSEG 598 (602)
Q Consensus 557 ~~nl~~-~---~~~~~~~----i~~al~~~~l~~~~~~~~~~l~~~v~~~ 598 (602)
+||+.. . .+.+++. +..-|+.+||..-. -+.+|.++++|
T Consensus 103 ~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~---~~~~PsELSGG 149 (263)
T COG1127 103 FENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA---ADLYPSELSGG 149 (263)
T ss_pred hHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh---hhhCchhhcch
Confidence 999863 1 2234443 44557788988742 23466676654
No 459
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=3e-19 Score=166.68 Aligned_cols=98 Identities=30% Similarity=0.428 Sum_probs=82.8
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh-hccceEecCCcccccc-chhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
+..+||++++||+++++|+||+|||||+|+|+|+.++.+|+|.++|+||...++++. |..|+||||...+|+. ||.||
T Consensus 19 L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeEN 98 (237)
T COG0410 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEEN 98 (237)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHH
Confidence 457999999999999999999999999999999999999999999999999998765 7789999999999976 99999
Q ss_pred cCCCCC------CcHHHHHHHHHHcC
Q psy3001 560 LDPVGE------SSDEAIWKALELAH 579 (602)
Q Consensus 560 l~~~~~------~~~~~i~~al~~~~ 579 (602)
|..... ..+..++++.+.+=
T Consensus 99 L~~g~~~~~~~~~~~~~~e~v~~lFP 124 (237)
T COG0410 99 LLLGAYARRDKEAQERDLEEVYELFP 124 (237)
T ss_pred HhhhhhcccccccccccHHHHHHHCh
Confidence 963311 11222666666653
No 460
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.76 E-value=5.9e-19 Score=171.62 Aligned_cols=110 Identities=28% Similarity=0.364 Sum_probs=91.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---hhhccceEecCCccccc-cch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQDPVLFS-GTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~---~lr~~i~~V~Qdp~lf~-~Tv 556 (602)
.+.++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.. .+|++++|+||+|.+|. .||
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTV 97 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccH
Confidence 34579999999999999999999999999999999999999999999998765533 36778999999999886 499
Q ss_pred hcccCCC----CC---CcHHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPV----GE---SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+... .. ..++++.++++.+++.++.++.|..
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 138 (216)
T TIGR00960 98 YDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQ 138 (216)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 9998631 11 1345689999999998877766653
No 461
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.76 E-value=8.7e-19 Score=172.71 Aligned_cols=108 Identities=31% Similarity=0.400 Sum_probs=90.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh---hhhhccceEecCCcccccc-chh
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQDPVLFSG-TLR 557 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~---~~lr~~i~~V~Qdp~lf~~-Tv~ 557 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+. ..+|++++||||+|.+|.. ||+
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 95 (235)
T cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVF 95 (235)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHH
Confidence 457999999999999999999999999999999999999999999999877654 4567889999999999876 999
Q ss_pred cccCCC----CCCc----HHHHHHHHHHcCCCcccccccc
Q psy3001 558 LNLDPV----GESS----DEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~----~~~~----~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+|+... ...+ .+++.++++.+++.++.++.|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (235)
T cd03261 96 ENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPA 135 (235)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChh
Confidence 998532 1112 3457889999999877665554
No 462
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.76 E-value=1.1e-18 Score=168.24 Aligned_cols=108 Identities=23% Similarity=0.338 Sum_probs=90.2
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc--cccccchhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP--VLFSGTLRL 558 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp--~lf~~Tv~~ 558 (602)
.+.++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...+++++|+||+| .+|..|+++
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhhhhccHHH
Confidence 3457999999999999999999999999999999999999999999998753 34567899999998 467789999
Q ss_pred ccCCCC---CCcHHHHHHHHHHcCCCccccccccCC
Q psy3001 559 NLDPVG---ESSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 559 nl~~~~---~~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
|+.... ....+++.++++.+++.++.++.|..|
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 127 (205)
T cd03226 92 ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL 127 (205)
T ss_pred HHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhC
Confidence 986421 123457899999999998877766543
No 463
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.76 E-value=8.8e-19 Score=179.98 Aligned_cols=114 Identities=22% Similarity=0.337 Sum_probs=92.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccC-----CCCceEEECCeecCC--CChhhhhccceEecCCcccccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQDPVLFSG 554 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~-----~~~G~I~i~g~~i~~--~~~~~lr~~i~~V~Qdp~lf~~ 554 (602)
++++||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+...+|++++||||+|++|++
T Consensus 98 L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ 177 (329)
T PRK14257 98 LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEM 177 (329)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCC
Confidence 447999999999999999999999999999999996 579999999999974 3446778899999999999999
Q ss_pred chhcccCCCC---CCcHHH-----HHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 555 TLRLNLDPVG---ESSDEA-----IWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 555 Tv~~nl~~~~---~~~~~~-----i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
|+++|+.... ..++++ +.++++.++|++ ++++.++++|.+|
T Consensus 178 ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~L 226 (329)
T PRK14257 178 SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-------EVKDDLDKAGNAL 226 (329)
T ss_pred cHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-------hhhhhhhCCcccC
Confidence 9999997321 223332 577788888764 3456677777765
No 464
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=8.6e-19 Score=176.83 Aligned_cols=111 Identities=26% Similarity=0.364 Sum_probs=93.7
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc--ccccchhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV--LFSGTLRL 558 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~--lf~~Tv~~ 558 (602)
.+.++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+...+|++++||||+|. ++..||++
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 101 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVED 101 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHH
Confidence 3457999999999999999999999999999999999999999999999987777778889999999983 55679999
Q ss_pred ccCCCC---CC----cHHHHHHHHHHcCCCccccccccCC
Q psy3001 559 NLDPVG---ES----SDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 559 nl~~~~---~~----~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
|+.... .. .++++.++++.++|.++.++.|..|
T Consensus 102 ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13650 102 DVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARL 141 (279)
T ss_pred HHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 996421 11 2356899999999988877766543
No 465
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=7.8e-19 Score=176.67 Aligned_cols=109 Identities=25% Similarity=0.334 Sum_probs=93.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc--cccccchhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP--VLFSGTLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp--~lf~~Tv~~n 559 (602)
+.++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+..+++++++|+||+| .+|..||++|
T Consensus 21 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~ 100 (274)
T PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDD 100 (274)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHH
Confidence 45799999999999999999999999999999999999999999999998777777888999999999 5778899999
Q ss_pred cCCCC---CC----cHHHHHHHHHHcCCCccccccccC
Q psy3001 560 LDPVG---ES----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 560 l~~~~---~~----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+.... .. .++++.++++.++|.++.++.|..
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 138 (274)
T PRK13647 101 VAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYH 138 (274)
T ss_pred HHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhh
Confidence 96421 11 235688999999998877776654
No 466
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.76 E-value=2.6e-19 Score=168.43 Aligned_cols=111 Identities=29% Similarity=0.369 Sum_probs=94.9
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh-hccceEecCCcccccc-chhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLFSG-TLRL 558 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Qdp~lf~~-Tv~~ 558 (602)
.+.++||++++||++|++|||||||||++++|+|+|+|++|+|.++|+||...+++++ |..|+--+|.+.+|++ ||-|
T Consensus 19 Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlE 98 (250)
T COG0411 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLE 98 (250)
T ss_pred EEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHH
Confidence 3457999999999999999999999999999999999999999999999999998876 6679999999999977 9999
Q ss_pred ccCCC-------------------CCCcHHHHHHHHHHcCCCccccccccCC
Q psy3001 559 NLDPV-------------------GESSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 559 nl~~~-------------------~~~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
|+... .....|+..+.|+.+||.+..+.....|
T Consensus 99 Nv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~L 150 (250)
T COG0411 99 NVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNL 150 (250)
T ss_pred HHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcC
Confidence 97421 1123466888999999998877655544
No 467
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.75 E-value=1.1e-18 Score=166.09 Aligned_cols=108 Identities=24% Similarity=0.358 Sum_probs=88.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCC--ChhhhhccceEecCCc--cccccchh
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL--GLHTLRSRLTIIPQDP--VLFSGTLR 557 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~--~~~~lr~~i~~V~Qdp--~lf~~Tv~ 557 (602)
++++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++... +...++++++|+||+| .+|..|++
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 87 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVD 87 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHH
Confidence 4579999999999999999999999999999999999999999999988522 2345677899999999 46778999
Q ss_pred cccCCC---CCCc----HHHHHHHHHHcCCCcccccccc
Q psy3001 558 LNLDPV---GESS----DEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~---~~~~----~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+|+... ...+ ++++.++++.+++.++.++.|.
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 126 (190)
T TIGR01166 88 QDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTH 126 (190)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChh
Confidence 998532 1111 3468899999999877666554
No 468
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.75 E-value=1.1e-18 Score=169.85 Aligned_cols=110 Identities=27% Similarity=0.306 Sum_probs=90.7
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh----hhccceEecCCcccccc-c
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT----LRSRLTIIPQDPVLFSG-T 555 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~----lr~~i~~V~Qdp~lf~~-T 555 (602)
.+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+... .+++++|+||+|.+|.+ |
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLT 98 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCc
Confidence 355799999999999999999999999999999999999999999999988765432 35689999999999876 9
Q ss_pred hhcccCCC---CCC----cHHHHHHHHHHcCCCccccccccC
Q psy3001 556 LRLNLDPV---GES----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 556 v~~nl~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
|++|+... ... .++++.++++.+++.++.++.|..
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (218)
T cd03255 99 ALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSE 140 (218)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhh
Confidence 99998532 111 235688999999998776665543
No 469
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.75 E-value=2e-18 Score=170.61 Aligned_cols=108 Identities=31% Similarity=0.486 Sum_probs=91.8
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...++..+|++++|+||+|.+|..|+++|+.
T Consensus 19 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~ 98 (241)
T PRK14250 19 LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIE 98 (241)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHh
Confidence 45799999999999999999999999999999999999999999999998777777788999999999999889999986
Q ss_pred CCC---CCcHHHHHHHHHHcCCC-cccccccc
Q psy3001 562 PVG---ESSDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 562 ~~~---~~~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
... ....+++.++++.+++. ++..+.|.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 130 (241)
T PRK14250 99 YGPMLKGEKNVDVEYYLSIVGLNKEYATRDVK 130 (241)
T ss_pred cchhhcCcHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 421 12345688899999996 45554443
No 470
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.3e-18 Score=171.10 Aligned_cols=109 Identities=25% Similarity=0.285 Sum_probs=89.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh---hh-ccceEecCCcccccc-c
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LR-SRLTIIPQDPVLFSG-T 555 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~---lr-~~i~~V~Qdp~lf~~-T 555 (602)
.+.++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+..+ ++ ++++|+||+|.+|.. |
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 103 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFT 103 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCC
Confidence 345799999999999999999999999999999999999999999999998776543 33 579999999988875 9
Q ss_pred hhcccCC----CCC---CcHHHHHHHHHHcCCCcccccccc
Q psy3001 556 LRLNLDP----VGE---SSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 556 v~~nl~~----~~~---~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+++|+.. ... ..++++.++++.+++.++.++.|.
T Consensus 104 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 104 ALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 9999853 111 123568899999999877665554
No 471
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.75 E-value=2.8e-18 Score=164.50 Aligned_cols=76 Identities=8% Similarity=0.041 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHH-HHHHHhc-cccEEEEeeecccccccCCeEEEEeCceEEee
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ-STIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEF 428 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~ 428 (602)
+|+||+..+++++ .+|+++++|||++++|+.+...+. ..++.+. .+.++|++||+.+....||++.++++|++...
T Consensus 94 ~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 94 SHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 5999999999885 899999999999999999988875 4566554 36899999999655445999999999999754
No 472
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.75 E-value=1.6e-18 Score=167.88 Aligned_cols=108 Identities=29% Similarity=0.416 Sum_probs=90.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc--ccccchhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV--LFSGTLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~--lf~~Tv~~n 559 (602)
+.++||++.+|+++||+|+||||||||+++|+|+++|++|+|.++|+++...+...++++++|+||+|. ++..|+++|
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~ 96 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEE 96 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHH
Confidence 457999999999999999999999999999999999999999999999987766777889999999984 567799999
Q ss_pred cCCC---CCC----cHHHHHHHHHHcCCCcccccccc
Q psy3001 560 LDPV---GES----SDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 560 l~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+... ... .++++.++++.+++.++.++.|.
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 133 (211)
T cd03225 97 VAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPF 133 (211)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 8532 111 23457889999999877666554
No 473
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=2.3e-18 Score=166.75 Aligned_cols=106 Identities=26% Similarity=0.354 Sum_probs=89.4
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcccCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLDP 562 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~~ 562 (602)
++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|.++...+. .+++++|+||+|.+|.+ |+++|+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccccCCCCcHHHHHhc
Confidence 5899999999999999999999999999999999999999999999876543 35689999999999875 99999863
Q ss_pred CC----C---CcHHHHHHHHHHcCCCccccccccCC
Q psy3001 563 VG----E---SSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 563 ~~----~---~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
.. . ..++++.++++.+++.++..+.|..|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 129 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGEL 129 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccC
Confidence 21 1 23456899999999988777666543
No 474
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=1.5e-18 Score=175.02 Aligned_cols=110 Identities=26% Similarity=0.345 Sum_probs=93.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc--cccccchhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP--VLFSGTLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp--~lf~~Tv~~n 559 (602)
+.++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+...++++++|+||+| .++..||++|
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~en 102 (279)
T PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDD 102 (279)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHH
Confidence 45799999999999999999999999999999999999999999999998877777788999999998 4567799999
Q ss_pred cCCCC---CC----cHHHHHHHHHHcCCCccccccccCC
Q psy3001 560 LDPVG---ES----SDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 560 l~~~~---~~----~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
+.... .. .++++.++++.++|.++.++.|..|
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13635 103 VAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRL 141 (279)
T ss_pred HhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccC
Confidence 86421 11 2355899999999998888777643
No 475
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.75 E-value=3e-18 Score=167.54 Aligned_cols=107 Identities=26% Similarity=0.337 Sum_probs=90.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++|+||+|.+|..|+++|+.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~ 102 (225)
T PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLI 102 (225)
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHH
Confidence 45799999999999999999999999999999999999999999999998877777788999999999999889999985
Q ss_pred C----CCC-CcHHHHHHHHHHcCCCc-cccccc
Q psy3001 562 P----VGE-SSDEAIWKALELAHLNT-FVSNLP 588 (602)
Q Consensus 562 ~----~~~-~~~~~i~~al~~~~l~~-~~~~~~ 588 (602)
. ... ..++++.++++.+++.+ ..++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (225)
T PRK10247 103 FPWQIRNQQPDPAIFLDDLERFALPDTILTKNI 135 (225)
T ss_pred hHHhhcCCChHHHHHHHHHHHcCCChHHhcCCc
Confidence 3 111 23456789999999963 444333
No 476
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.75 E-value=2e-18 Score=179.16 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=91.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++...++. +++|+||||++.+|.. ||++|+
T Consensus 20 l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v~Q~~~lfp~~tv~eNi 97 (356)
T PRK11650 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVFQNYALYPHMSVRENM 97 (356)
T ss_pred EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCccccCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999877654 4689999999999975 999999
Q ss_pred CCCC---CC----cHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG---ES----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~---~~----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.... .. ..+++.++++.++|.++.++.|..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 134 (356)
T PRK11650 98 AYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRE 134 (356)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhh
Confidence 6321 11 235688999999999887776653
No 477
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.75 E-value=2.2e-18 Score=177.32 Aligned_cols=109 Identities=28% Similarity=0.365 Sum_probs=91.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh---hhccceEecCCccccc-cch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQDPVLFS-GTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~---lr~~i~~V~Qdp~lf~-~Tv 556 (602)
.++++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+..+ +|++|+||||++.+|. .||
T Consensus 20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv 99 (343)
T TIGR02314 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTV 99 (343)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcH
Confidence 456799999999999999999999999999999999999999999999998876543 5778999999999985 699
Q ss_pred hcccCCC---CCC----cHHHHHHHHHHcCCCcccccccc
Q psy3001 557 RLNLDPV---GES----SDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 557 ~~nl~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
++|+... ... ..+++.++++.+||.++.++.|.
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~ 139 (343)
T TIGR02314 100 FGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS 139 (343)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 9998521 111 23458899999999887665544
No 478
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=2.1e-18 Score=174.63 Aligned_cols=109 Identities=29% Similarity=0.490 Sum_probs=89.6
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC--hhhhhccceEecCCc--cccccch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG--LHTLRSRLTIIPQDP--VLFSGTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~--~~~lr~~i~~V~Qdp--~lf~~Tv 556 (602)
.+.++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|.+++..+ ...++++++||||+| .+|..||
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv 101 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETI 101 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccH
Confidence 355799999999999999999999999999999999999999999999997644 356788999999998 5678899
Q ss_pred hcccCCCC---CCc----HHHHHHHHHHcCCC--cccccccc
Q psy3001 557 RLNLDPVG---ESS----DEAIWKALELAHLN--TFVSNLPA 589 (602)
Q Consensus 557 ~~nl~~~~---~~~----~~~i~~al~~~~l~--~~~~~~~~ 589 (602)
++|+.... ..+ .+++.++++.++|. ++.++.|.
T Consensus 102 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 143 (287)
T PRK13637 102 EKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPF 143 (287)
T ss_pred HHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcc
Confidence 99986321 122 24588999999997 45554443
No 479
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.74 E-value=2.1e-18 Score=171.09 Aligned_cols=105 Identities=19% Similarity=0.326 Sum_probs=88.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccC---CCCceEEECCeecCCCChhhhhccceEecCCccccccchh
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE---PADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLR 557 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~---~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~ 557 (602)
.++++||++.+||++||+|+||||||||+++|+|+++ |++|+|.++|+++...+....|++++|+||+|.+|..|++
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~ 96 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIY 96 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHH
Confidence 3457999999999999999999999999999999984 6999999999999877777778899999999999999999
Q ss_pred cccCCCC---------CCcHHHHHHHHHHcCCCcccc
Q psy3001 558 LNLDPVG---------ESSDEAIWKALELAHLNTFVS 585 (602)
Q Consensus 558 ~nl~~~~---------~~~~~~i~~al~~~~l~~~~~ 585 (602)
+|+.... ...++++.++++.+++.+++.
T Consensus 97 eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 133 (246)
T PRK14269 97 ENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133 (246)
T ss_pred HHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh
Confidence 9985321 112345788999999975443
No 480
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.74 E-value=3.4e-18 Score=165.12 Aligned_cols=95 Identities=60% Similarity=0.898 Sum_probs=84.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+++++|++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+..++|++++|+||+|.+|.+|+++|+.
T Consensus 24 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~ 103 (207)
T cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLD 103 (207)
T ss_pred ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhc
Confidence 44699999999999999999999999999999999999999999999998777777888999999999999999999997
Q ss_pred CCCCCcHHHHHHHHH
Q psy3001 562 PVGESSDEAIWKALE 576 (602)
Q Consensus 562 ~~~~~~~~~i~~al~ 576 (602)
.....+.+++.++++
T Consensus 104 ~~~~~~~~~~~~~l~ 118 (207)
T cd03369 104 PFDEYSDEEIYGALR 118 (207)
T ss_pred ccCCCCHHHHHHHhh
Confidence 554445566666665
No 481
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.74 E-value=1.3e-18 Score=156.49 Aligned_cols=101 Identities=39% Similarity=0.594 Sum_probs=91.2
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcccC
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLD 561 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~ 561 (602)
++++|++++|++++|+|+||||||||+++|+|.++|++|+|.++|+++...+....++.++|+||++.+|.+ ||++|
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~-- 79 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN-- 79 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH--
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence 368999999999999999999999999999999999999999999999998888899999999999999877 59999
Q ss_pred CCCCCcHHHHHHHHHHcCCCcccccccc
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
..+++++++++.+++.++.++..+
T Consensus 80 ----~~~~~~~~~l~~l~~~~~~~~~~~ 103 (137)
T PF00005_consen 80 ----ESDERIEEVLKKLGLEDLLDRKIG 103 (137)
T ss_dssp ----HHHHHHHHHHHHTTHGGGTGSBGT
T ss_pred ----cccccccccccccccccccccccc
Confidence 556789999999998886555543
No 482
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.74 E-value=3e-18 Score=169.58 Aligned_cols=109 Identities=30% Similarity=0.378 Sum_probs=90.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC---hhhhhccceEecCCccccc-cch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQDPVLFS-GTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~---~~~lr~~i~~V~Qdp~lf~-~Tv 556 (602)
.+.++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+ ...++++++|+||++.+|. .||
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSV 95 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcH
Confidence 345799999999999999999999999999999999999999999999988765 3456788999999998886 599
Q ss_pred hcccCCC------------C---CCcHHHHHHHHHHcCCCcccccccc
Q psy3001 557 RLNLDPV------------G---ESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 557 ~~nl~~~------------~---~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
++|+... . ...++++.++++.+++.++.++.+.
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (241)
T cd03256 96 LENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD 143 (241)
T ss_pred HHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc
Confidence 9998521 0 1124568889999999876655443
No 483
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.74 E-value=2.1e-18 Score=167.50 Aligned_cols=108 Identities=26% Similarity=0.342 Sum_probs=90.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---hhhccceEecCCccccc-cchh
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQDPVLFS-GTLR 557 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~---~lr~~i~~V~Qdp~lf~-~Tv~ 557 (602)
+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.. .++++++|+||+|.+|. .|++
T Consensus 18 l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 97 (214)
T TIGR02673 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVY 97 (214)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHH
Confidence 4579999999999999999999999999999999999999999999999876542 46778999999999886 5999
Q ss_pred cccCCC----C---CCcHHHHHHHHHHcCCCcccccccc
Q psy3001 558 LNLDPV----G---ESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~----~---~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+|+... . ...+++++++++.+++.++..+.|.
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (214)
T TIGR02673 98 ENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE 136 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh
Confidence 998531 1 1134568999999999877666554
No 484
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.74 E-value=3e-18 Score=168.01 Aligned_cols=107 Identities=30% Similarity=0.417 Sum_probs=89.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhcc-----CCCCceEEECCeecCCCC--hhhhhccceEecCCccccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRII-----EPADGTIIIDGVDIRTLG--LHTLRSRLTIIPQDPVLFS 553 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~-----~~~~G~I~i~g~~i~~~~--~~~lr~~i~~V~Qdp~lf~ 553 (602)
.+.++||++.+||++||+|+||||||||+++|+|++ +|++|+|.++|+++...+ ...++++++|+||+|.+|.
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 94 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP 94 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhcc
Confidence 345799999999999999999999999999999999 999999999999987765 4566788999999999887
Q ss_pred cchhcccCCC----CCC----cHHHHHHHHHHcCCCcccccc
Q psy3001 554 GTLRLNLDPV----GES----SDEAIWKALELAHLNTFVSNL 587 (602)
Q Consensus 554 ~Tv~~nl~~~----~~~----~~~~i~~al~~~~l~~~~~~~ 587 (602)
.||++|+... ... .++++.++++.+++.+...+.
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 95 GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred ccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhcc
Confidence 7999998532 111 235688999999998765544
No 485
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.74 E-value=3.3e-18 Score=172.51 Aligned_cols=111 Identities=22% Similarity=0.380 Sum_probs=93.2
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc--cccccchhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP--VLFSGTLRL 558 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp--~lf~~Tv~~ 558 (602)
.+.+++|++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+...++++++|+||+| .+|..||++
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~ 98 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQ 98 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHH
Confidence 345799999999999999999999999999999999999999999999988766677888999999998 467789999
Q ss_pred ccCCCC---CCc----HHHHHHHHHHcCCCccccccccCC
Q psy3001 559 NLDPVG---ESS----DEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 559 nl~~~~---~~~----~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
|+.... ..+ ++.+.++++.+++.++..+.|..|
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (277)
T PRK13652 99 DIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHL 138 (277)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 985311 112 345889999999988777766543
No 486
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.74 E-value=2.2e-18 Score=167.32 Aligned_cols=110 Identities=30% Similarity=0.366 Sum_probs=90.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh---hhhhccceEecCCcccccc-ch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~---~~lr~~i~~V~Qdp~lf~~-Tv 556 (602)
.+.++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+. ...|+.++|+||+|.+|.. |+
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~ 95 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNV 95 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcH
Confidence 3457999999999999999999999999999999999999999999999876653 2467789999999998874 99
Q ss_pred hcccCCC----CC---CcHHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPV----GE---SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+... .. ..++++.++++.+++.+..++.|..
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (214)
T cd03292 96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAE 136 (214)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhh
Confidence 9998532 11 1235688999999998776665543
No 487
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.74 E-value=2.8e-18 Score=167.13 Aligned_cols=107 Identities=22% Similarity=0.327 Sum_probs=89.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.+++|++.+||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ....++++++|+||+|.+|.. ||++|+
T Consensus 21 l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l 99 (218)
T cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENL 99 (218)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCcccCcCCCHHHHH
Confidence 457999999999999999999999999999999999999999999999875 345667899999999999885 999998
Q ss_pred CCC----CC---CcHHHHHHHHHHcCCCcccccccc
Q psy3001 561 DPV----GE---SSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 561 ~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
... .. ...+++.++++.+++.++.++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (218)
T cd03266 100 EYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG 135 (218)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhh
Confidence 421 11 124568889999999877665544
No 488
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=3.1e-18 Score=177.19 Aligned_cols=107 Identities=22% Similarity=0.365 Sum_probs=91.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++.+||+++|+||||||||||+++|+|+++|++|+|.+||+++...++. +++++||||++.+|.. ||++|+
T Consensus 22 l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~vfQ~~~lfp~~tv~eNi 99 (351)
T PRK11432 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMVFQSYALFPHMSLGENV 99 (351)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCcccCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999876643 5789999999999976 999999
Q ss_pred CCCC---C----CcHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG---E----SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~---~----~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.+.- . ..++++.++++.+++.++.++.|..
T Consensus 100 ~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~ 136 (351)
T PRK11432 100 GYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQ 136 (351)
T ss_pred HHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 6421 1 1245789999999998877666543
No 489
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=3.3e-18 Score=165.94 Aligned_cols=107 Identities=24% Similarity=0.338 Sum_probs=88.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccc-cchhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS-GTLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~-~Tv~~nl 560 (602)
++++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+. .+++++|+||+|.+|. .|+++|+
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~~~l 93 (213)
T cd03259 16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMVFQDYALFPHLTVAENI 93 (213)
T ss_pred ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEEcCchhhccCCcHHHHH
Confidence 457999999999999999999999999999999999999999999999876442 3568999999998886 5999998
Q ss_pred CCCC---C----CcHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG---E----SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~---~----~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.... . ...+++.++++.+++.++.++.|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 130 (213)
T cd03259 94 AFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE 130 (213)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhh
Confidence 5321 1 1234588999999998877666543
No 490
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.73 E-value=4.2e-18 Score=178.38 Aligned_cols=108 Identities=30% Similarity=0.436 Sum_probs=93.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~nl 560 (602)
+.++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..+++++++||||++.+ |..||++|+
T Consensus 19 L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v 98 (402)
T PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVV 98 (402)
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999988888889999999999987 567999998
Q ss_pred CCCC-----------CCcHHHHHHHHHHcCCCcccccccc
Q psy3001 561 DPVG-----------ESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 561 ~~~~-----------~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
.... ....+.++++++.+++.++.++.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~ 138 (402)
T PRK09536 99 EMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT 138 (402)
T ss_pred HhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh
Confidence 5321 1124568999999999887766544
No 491
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.73 E-value=5.8e-18 Score=171.08 Aligned_cols=104 Identities=32% Similarity=0.489 Sum_probs=89.8
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRL 558 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~ 558 (602)
..+.++||++++||++|++||||||||||+|+|+|+++|++|+|.++|.+...- ..+.++++||+||+|.++.. |+++
T Consensus 19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy~~~~~~~~~~lT~~e 97 (293)
T COG1131 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGYVPQEPSLYPELTVRE 97 (293)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEEEccCCCCCccccHHH
Confidence 345679999999999999999999999999999999999999999999987765 67788999999999998866 9999
Q ss_pred ccCCC----C---CCcHHHHHHHHHHcCCCccc
Q psy3001 559 NLDPV----G---ESSDEAIWKALELAHLNTFV 584 (602)
Q Consensus 559 nl~~~----~---~~~~~~i~~al~~~~l~~~~ 584 (602)
|+... + ...++++.++++.++|.+..
T Consensus 98 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~ 130 (293)
T COG1131 98 NLEFFARLYGLSKEEAEERIEELLELFGLEDKA 130 (293)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh
Confidence 98531 1 12356799999999999743
No 492
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=3.9e-18 Score=167.85 Aligned_cols=110 Identities=32% Similarity=0.427 Sum_probs=90.9
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---hhhccceEecCCccccc-cch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQDPVLFS-GTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~---~lr~~i~~V~Qdp~lf~-~Tv 556 (602)
.+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.. ..+++++|+||+|.+|. .|+
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTV 99 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcH
Confidence 35579999999999999999999999999999999999999999999998776543 34778999999999987 599
Q ss_pred hcccCCC---CCC----cHHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPV---GES----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+... ... ..+++.++++.+++.++.++.+..
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (233)
T cd03258 100 FENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQ 140 (233)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhh
Confidence 9998521 111 245688999999998876665543
No 493
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.73 E-value=4.6e-18 Score=165.79 Aligned_cols=107 Identities=25% Similarity=0.280 Sum_probs=88.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.+++|++.+||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++|+||++.+|.. ||++|+
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~~~l 94 (220)
T cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIVFQDLSVDDELTGWENL 94 (220)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEecCCccccccCcHHHHH
Confidence 4579999999999999999999999999999999999999999999987653 34567789999999988875 999998
Q ss_pred CCC----CC---CcHHHHHHHHHHcCCCcccccccc
Q psy3001 561 DPV----GE---SSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 561 ~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
... .. ..++++.++++.+++.++.++.|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 130 (220)
T cd03265 95 YIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK 130 (220)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh
Confidence 521 11 124568899999999877665554
No 494
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.73 E-value=3.6e-18 Score=176.97 Aligned_cols=107 Identities=25% Similarity=0.274 Sum_probs=91.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+++++|++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...++. +++++||||++.+|+. ||++|+
T Consensus 20 l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~v~Q~~~lfp~~tv~eNi 97 (353)
T TIGR03265 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVFQSYALFPNLTVADNI 97 (353)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCcccCCCCcHHHHH
Confidence 4579999999999999999999999999999999999999999999999876654 5789999999999975 999999
Q ss_pred CCCC---C----CcHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG---E----SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~---~----~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.+.- . ..++++.++++.++|.++.++.|..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~ 134 (353)
T TIGR03265 98 AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ 134 (353)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhh
Confidence 6321 1 1245699999999999887766654
No 495
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.73 E-value=4.7e-18 Score=168.46 Aligned_cols=108 Identities=31% Similarity=0.376 Sum_probs=89.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh---hhhhccceEecCCccccc-cchh
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQDPVLFS-GTLR 557 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~---~~lr~~i~~V~Qdp~lf~-~Tv~ 557 (602)
+.++||++.+||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+. ..++++++|+||++.+|. .||+
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVL 97 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHH
Confidence 457999999999999999999999999999999999999999999999876653 345778999999998886 5999
Q ss_pred cccCCCC---------------CCcHHHHHHHHHHcCCCcccccccc
Q psy3001 558 LNLDPVG---------------ESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~~---------------~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+|+.... ...++++.++++.+++.++.++.+.
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (243)
T TIGR02315 98 ENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD 144 (243)
T ss_pred HHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 9985310 1123468889999999876665443
No 496
>KOG2355|consensus
Probab=99.73 E-value=3.3e-17 Score=148.82 Aligned_cols=199 Identities=19% Similarity=0.227 Sum_probs=125.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC-CChHHHhhccceecccchhhhhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-LGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~-~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
+.|.|+|+..+.+ ....+||.||||||||+|+|+|-.-...|.|.+.|.+.-. -+.. -.....|+--+=..
T Consensus 28 P~~~Dfnldlp~g-sRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~-~Sgdl~YLGgeW~~------ 99 (291)
T KOG2355|consen 28 PIFFDFNLDLPAG-SRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE-SSGDLSYLGGEWSK------ 99 (291)
T ss_pred ceEEEEeeccCCC-ceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc-ccCceeEecccccc------
Confidence 3455666666655 7799999999999999999999888888999999875422 0000 00011111110000
Q ss_pred CCceeEeeecccceeeeccccceeecccccc-cccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKP-LIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
...+ .+..-...++.. .++... .-..+ .+.++..+.++ . .+...-+.+|- |||+
T Consensus 100 --~~~~-------------agevplq~D~sae~mifgV--~g~dp-~Rre~LI~iLD---I--dl~WRmHkvSD--GqrR 154 (291)
T KOG2355|consen 100 --TVGI-------------AGEVPLQGDISAEHMIFGV--GGDDP-ERREKLIDILD---I--DLRWRMHKVSD--GQRR 154 (291)
T ss_pred --cccc-------------cccccccccccHHHHHhhc--cCCCh-hHhhhhhhhee---c--cceEEEeeccc--cchh
Confidence 0000 000000011100 000000 00001 11111111111 0 12334455664 9999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||.|+..|++.-++|+|||.|--||.-.+..+.+.++... .++||++.||-.+-+.. +++++.+.+|+++..-.
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~ 231 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLK 231 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccc
Confidence 9999999999999999999999999999999999998764 47999999999999988 99999999999987433
No 497
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.73 E-value=4.9e-18 Score=164.73 Aligned_cols=106 Identities=27% Similarity=0.415 Sum_probs=89.0
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcccCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLDP 562 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~~ 562 (602)
++||++.+||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+ ..++.++|+||+|.+|.+ |+++|+..
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEEeccCccCCCCcHHHHHHh
Confidence 699999999999999999999999999999999999999999999987543 356789999999998875 99999852
Q ss_pred C--C--C---CcHHHHHHHHHHcCCCccccccccCC
Q psy3001 563 V--G--E---SSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 563 ~--~--~---~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
. . . ..++++.++++.+++.+...+.|..|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 129 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQL 129 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccC
Confidence 1 1 1 13456888999999988777766543
No 498
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.73 E-value=2.1e-17 Score=154.73 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=65.7
Q ss_pred CCCChhhHHHHHHHHHHh----hCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeecccccccCCeEEEEeC
Q psy3001 348 VTGNVGQRQLICLARALL----RKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
+| +|||||++|||++. .+|+++++|||+++||+.....+.+.+++..+ +.|+|++||+++.+..+|+++.+..
T Consensus 95 LS--~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LS--GGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CC--HHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 55 69999999999996 69999999999999999999999999988644 5899999999998877999999875
No 499
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.73 E-value=4e-18 Score=165.42 Aligned_cols=104 Identities=25% Similarity=0.301 Sum_probs=86.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc---cccchh
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL---FSGTLR 557 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l---f~~Tv~ 557 (602)
.+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++. ..+++++|+||+|.+ |..||+
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~ 88 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRRSIDRDFPISVR 88 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEeccccccccCCCCcHH
Confidence 345799999999999999999999999999999999999999999998764 357789999999976 567999
Q ss_pred cccCCCCC-----------CcHHHHHHHHHHcCCCcccccccc
Q psy3001 558 LNLDPVGE-----------SSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~~~-----------~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+|+..... ..++++.++++.+++.++.++.+.
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 131 (213)
T cd03235 89 DVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG 131 (213)
T ss_pred HHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence 99853211 123568899999999876665554
No 500
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.73 E-value=4.5e-18 Score=167.80 Aligned_cols=109 Identities=27% Similarity=0.325 Sum_probs=89.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh-hccceEecCCcccccc-chhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLFSG-TLRL 558 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Qdp~lf~~-Tv~~ 558 (602)
.+.++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|.++...+.... +++++|+||+|.+|.+ ||++
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~ 94 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLE 94 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHH
Confidence 3457999999999999999999999999999999999999999999999887765544 5679999999999886 9999
Q ss_pred ccCCC----CC-------------CcHHHHHHHHHHcCCCcccccccc
Q psy3001 559 NLDPV----GE-------------SSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 559 nl~~~----~~-------------~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
|+... .. ...+++.++++.+++.+..++.+.
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (236)
T cd03219 95 NVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG 142 (236)
T ss_pred HHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh
Confidence 98421 11 113457888999999776555443
Done!