Query psy3001
Match_columns 602
No_of_seqs 417 out of 4287
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 22:59:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 1.6E-79 5.5E-84 733.2 43.8 400 3-436 161-641 (1321)
2 3g5u_A MCG1178, multidrug resi 100.0 8.7E-73 3E-77 673.6 41.9 401 3-437 133-614 (1284)
3 4f4c_A Multidrug resistance pr 100.0 1.4E-55 4.8E-60 526.9 27.9 414 3-449 819-1316(1321)
4 3qf4_A ABC transporter, ATP-bi 100.0 1.3E-51 4.6E-56 456.1 40.2 407 4-446 89-575 (587)
5 3qf4_B Uncharacterized ABC tra 100.0 9.1E-52 3.1E-56 458.7 33.7 407 4-447 103-588 (598)
6 4a82_A Cystic fibrosis transme 100.0 3.4E-51 1.2E-55 452.7 36.2 406 4-446 87-573 (578)
7 3b5x_A Lipid A export ATP-bind 100.0 1.4E-49 4.7E-54 440.6 43.4 406 4-447 91-577 (582)
8 3b60_A Lipid A export ATP-bind 100.0 1.9E-49 6.6E-54 439.4 43.4 405 4-447 91-577 (582)
9 2yl4_A ATP-binding cassette SU 100.0 2.6E-49 9E-54 439.4 40.5 408 4-447 88-581 (595)
10 3g5u_A MCG1178, multidrug resi 100.0 8.9E-47 3E-51 450.0 34.5 415 3-449 774-1270(1284)
11 3nh6_A ATP-binding cassette SU 100.0 3.4E-45 1.2E-49 369.4 18.4 254 158-447 15-287 (306)
12 1yqt_A RNAse L inhibitor; ATP- 100.0 8.2E-45 2.8E-49 396.3 10.8 336 199-590 36-401 (538)
13 3bk7_A ABC transporter ATP-bin 100.0 1.2E-44 4E-49 398.8 10.8 335 200-590 107-471 (607)
14 3ozx_A RNAse L inhibitor; ATP 100.0 7.1E-44 2.4E-48 387.7 14.9 336 205-590 18-385 (538)
15 2iw3_A Elongation factor 3A; a 100.0 3.8E-43 1.3E-47 398.6 10.3 277 197-527 447-734 (986)
16 3tui_C Methionine import ATP-b 100.0 5.1E-41 1.8E-45 344.3 19.7 211 199-442 42-259 (366)
17 3j16_B RLI1P; ribosome recycli 100.0 8.9E-42 3.1E-46 375.0 14.7 241 331-591 205-468 (608)
18 3gfo_A Cobalt import ATP-bindi 100.0 6.2E-41 2.1E-45 334.1 18.9 206 198-437 21-234 (275)
19 3ux8_A Excinuclease ABC, A sub 100.0 7.4E-42 2.5E-46 385.0 11.3 311 200-534 33-411 (670)
20 2ff7_A Alpha-hemolysin translo 100.0 1.1E-39 3.8E-44 321.2 23.4 214 198-444 22-240 (247)
21 3tif_A Uncharacterized ABC tra 100.0 6.2E-40 2.1E-44 320.8 18.6 204 198-434 18-232 (235)
22 4g1u_C Hemin import ATP-bindin 100.0 8.9E-40 3E-44 325.0 19.5 205 197-436 23-237 (266)
23 3rlf_A Maltose/maltodextrin im 100.0 1E-39 3.6E-44 336.8 19.3 211 198-443 16-230 (381)
24 3fvq_A Fe(3+) IONS import ATP- 100.0 1.2E-39 4.3E-44 334.1 18.9 208 198-440 17-232 (359)
25 2ixe_A Antigen peptide transpo 100.0 3E-39 1E-43 322.3 20.7 213 199-445 33-253 (271)
26 2olj_A Amino acid ABC transpor 100.0 3.9E-39 1.3E-43 319.3 20.0 207 198-437 37-249 (263)
27 1g6h_A High-affinity branched- 100.0 8.1E-39 2.8E-43 317.4 19.5 204 198-433 20-239 (257)
28 2yyz_A Sugar ABC transporter, 100.0 1.1E-38 3.7E-43 328.3 20.6 207 198-439 16-226 (359)
29 2pcj_A ABC transporter, lipopr 100.0 1.1E-38 3.7E-43 309.8 19.3 200 198-430 17-222 (224)
30 1vpl_A ABC transporter, ATP-bi 100.0 9.9E-39 3.4E-43 315.4 19.0 205 198-436 28-235 (256)
31 1ji0_A ABC transporter; ATP bi 100.0 9.1E-39 3.1E-43 313.7 18.6 204 198-436 19-228 (240)
32 1b0u_A Histidine permease; ABC 100.0 9.6E-39 3.3E-43 317.3 18.8 207 198-437 19-243 (262)
33 2it1_A 362AA long hypothetical 100.0 1.2E-38 4.2E-43 328.2 20.3 207 198-439 16-226 (362)
34 2ghi_A Transport protein; mult 100.0 2.5E-38 8.7E-43 313.9 21.0 205 199-437 34-243 (260)
35 1mv5_A LMRA, multidrug resista 100.0 5.7E-39 1.9E-43 316.0 16.0 204 199-437 16-227 (243)
36 1z47_A CYSA, putative ABC-tran 100.0 1.2E-38 4.1E-43 327.1 18.6 206 199-439 29-238 (355)
37 1v43_A Sugar-binding transport 100.0 2.9E-38 9.8E-43 326.7 20.7 208 198-440 24-235 (372)
38 2ihy_A ABC transporter, ATP-bi 100.0 1.9E-38 6.3E-43 317.5 18.6 209 198-436 34-252 (279)
39 2onk_A Molybdate/tungstate ABC 100.0 4E-38 1.4E-42 308.3 18.6 201 200-438 14-218 (240)
40 2yz2_A Putative ABC transporte 100.0 2.6E-38 8.9E-43 315.1 17.6 205 198-437 20-228 (266)
41 3gd7_A Fusion complex of cysti 100.0 2.3E-38 7.7E-43 329.5 17.9 210 193-443 14-249 (390)
42 1oxx_K GLCV, glucose, ABC tran 100.0 1.7E-38 5.8E-43 327.2 16.4 207 200-439 20-233 (353)
43 1g29_1 MALK, maltose transport 100.0 3E-38 1E-42 327.3 18.2 208 198-440 16-233 (372)
44 2qi9_C Vitamin B12 import ATP- 100.0 3.9E-38 1.3E-42 309.9 17.5 199 200-436 15-222 (249)
45 3d31_A Sulfate/molybdate ABC t 100.0 3E-38 1E-42 324.1 16.1 202 200-439 15-220 (348)
46 2d2e_A SUFC protein; ABC-ATPas 100.0 7.9E-37 2.7E-41 301.8 20.7 200 198-432 16-229 (250)
47 2zu0_C Probable ATP-dependent 100.0 4.6E-36 1.6E-40 298.9 22.3 209 198-435 33-253 (267)
48 2cbz_A Multidrug resistance-as 100.0 9.2E-37 3.1E-41 298.7 16.7 192 199-437 19-218 (237)
49 2pjz_A Hypothetical protein ST 100.0 2.2E-36 7.4E-41 299.6 17.2 195 198-437 18-216 (263)
50 2pze_A Cystic fibrosis transme 100.0 4.1E-36 1.4E-40 292.7 16.3 194 198-437 21-219 (229)
51 2nq2_C Hypothetical ABC transp 100.0 4.7E-36 1.6E-40 296.2 16.4 190 198-436 18-217 (253)
52 1sgw_A Putative ABC transporte 100.0 1.3E-34 4.4E-39 277.9 15.5 185 199-425 23-210 (214)
53 2bbs_A Cystic fibrosis transme 100.0 2.6E-34 8.9E-39 288.5 14.9 190 199-436 52-247 (290)
54 3bk7_A ABC transporter ATP-bin 100.0 2.3E-30 7.7E-35 285.1 13.4 187 201-436 372-563 (607)
55 1yqt_A RNAse L inhibitor; ATP- 100.0 1.9E-30 6.5E-35 283.0 12.6 187 201-436 302-493 (538)
56 3ozx_A RNAse L inhibitor; ATP 100.0 4.7E-30 1.6E-34 279.0 12.9 187 201-434 284-475 (538)
57 2vf7_A UVRA2, excinuclease ABC 100.0 1.5E-30 5.1E-35 293.3 6.2 256 220-516 270-548 (842)
58 3j16_B RLI1P; ribosome recycli 100.0 2.1E-29 7.1E-34 276.9 10.7 191 199-437 361-560 (608)
59 3pih_A Uvrabc system protein A 100.0 9.4E-30 3.2E-34 289.1 8.1 171 329-509 445-627 (916)
60 2iw3_A Elongation factor 3A; a 99.9 6.9E-28 2.3E-32 273.8 14.2 84 343-430 897-981 (986)
61 2r6f_A Excinuclease ABC subuni 99.9 2.5E-28 8.5E-33 275.1 9.9 172 330-513 486-671 (972)
62 3ux8_A Excinuclease ABC, A sub 99.9 5.9E-27 2E-31 263.6 14.9 96 341-438 537-642 (670)
63 2ygr_A Uvrabc system protein A 99.9 1.8E-27 6.3E-32 269.0 10.3 171 332-513 505-689 (993)
64 4aby_A DNA repair protein RECN 99.9 4.4E-26 1.5E-30 242.8 12.6 78 351-428 297-380 (415)
65 3pih_A Uvrabc system protein A 99.9 1E-25 3.5E-30 256.0 15.4 109 328-438 785-904 (916)
66 3nh6_A ATP-binding cassette SU 99.9 2.4E-26 8.3E-31 231.7 7.9 121 482-602 70-191 (306)
67 2vf7_A UVRA2, excinuclease ABC 99.9 6.9E-26 2.3E-30 255.4 11.9 109 328-438 710-829 (842)
68 3b5x_A Lipid A export ATP-bind 99.9 3.1E-25 1.1E-29 245.4 15.6 120 483-602 360-481 (582)
69 2r6f_A Excinuclease ABC subuni 99.9 7.2E-25 2.5E-29 247.0 13.9 108 329-438 826-944 (972)
70 2ygr_A Uvrabc system protein A 99.9 2.6E-24 8.7E-29 243.5 13.6 107 329-437 844-961 (993)
71 2npi_A Protein CLP1; CLP1-PCF1 99.9 1.7E-25 6E-30 238.3 2.9 184 199-434 119-336 (460)
72 3b60_A Lipid A export ATP-bind 99.9 3.5E-24 1.2E-28 237.0 9.2 121 482-602 359-481 (582)
73 1mv5_A LMRA, multidrug resista 99.9 1.3E-23 4.6E-28 206.2 11.4 122 481-602 17-140 (243)
74 3qf4_A ABC transporter, ATP-bi 99.9 4.1E-24 1.4E-28 236.2 8.4 122 481-602 358-480 (587)
75 4a82_A Cystic fibrosis transme 99.9 3.5E-24 1.2E-28 236.7 7.5 122 481-602 356-478 (578)
76 2yl4_A ATP-binding cassette SU 99.9 7E-24 2.4E-28 235.2 9.5 121 482-602 360-484 (595)
77 4gp7_A Metallophosphoesterase; 99.9 2.5E-24 8.5E-29 200.1 4.6 67 351-417 85-168 (171)
78 2ff7_A Alpha-hemolysin translo 99.9 1.8E-23 6E-28 205.6 10.6 122 481-602 24-146 (247)
79 1tf7_A KAIC; homohexamer, hexa 99.9 7.3E-24 2.5E-28 231.7 8.5 260 198-528 25-318 (525)
80 3qf4_B Uncharacterized ABC tra 99.9 3.3E-24 1.1E-28 237.6 4.4 121 482-602 371-492 (598)
81 1e69_A Chromosome segregation 99.9 3.7E-22 1.3E-26 204.7 15.0 79 346-426 218-302 (322)
82 3b85_A Phosphate starvation-in 99.9 2.1E-24 7.3E-29 206.2 -2.2 144 209-413 20-163 (208)
83 3gd7_A Fusion complex of cysti 99.9 1.2E-22 4.2E-27 211.2 9.5 122 480-602 35-156 (390)
84 2v9p_A Replication protein E1; 99.9 7.3E-25 2.5E-29 220.1 -8.2 206 148-447 55-273 (305)
85 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.8E-21 6E-26 202.6 16.9 81 345-427 277-364 (365)
86 2ghi_A Transport protein; mult 99.9 2.6E-22 8.9E-27 198.8 9.3 121 481-602 35-156 (260)
87 2ixe_A Antigen peptide transpo 99.8 5.6E-22 1.9E-26 197.5 7.6 121 482-602 35-157 (271)
88 1ye8_A Protein THEP1, hypothet 99.8 3.4E-22 1.1E-26 186.4 5.0 147 214-427 2-159 (178)
89 2pt7_A CAG-ALFA; ATPase, prote 99.8 6.5E-22 2.2E-26 202.7 -2.1 130 201-424 161-291 (330)
90 3tif_A Uncharacterized ABC tra 99.8 2.1E-20 7.3E-25 182.2 8.4 103 481-583 20-137 (235)
91 2qi9_C Vitamin B12 import ATP- 99.8 3.4E-20 1.2E-24 182.0 9.7 108 482-590 16-126 (249)
92 2pze_A Cystic fibrosis transme 99.8 3.4E-20 1.2E-24 180.2 9.2 109 481-602 23-131 (229)
93 3gfo_A Cobalt import ATP-bindi 99.8 1.5E-20 5E-25 187.1 6.5 111 481-591 23-144 (275)
94 1z6g_A Guanylate kinase; struc 99.8 1.9E-22 6.4E-27 195.0 -7.0 177 199-422 11-193 (218)
95 3tui_C Methionine import ATP-b 99.8 3.1E-20 1.1E-24 190.3 8.7 110 481-590 43-163 (366)
96 4g1u_C Hemin import ATP-bindin 99.8 8.2E-20 2.8E-24 181.2 11.1 108 482-589 27-140 (266)
97 2olj_A Amino acid ABC transpor 99.8 4.4E-20 1.5E-24 182.6 6.9 109 482-590 40-159 (263)
98 1sgw_A Putative ABC transporte 99.8 8.1E-20 2.8E-24 175.0 8.5 103 481-589 24-132 (214)
99 2pcj_A ABC transporter, lipopr 99.8 4.2E-20 1.4E-24 178.9 5.9 109 482-590 20-140 (224)
100 1vpl_A ABC transporter, ATP-bi 99.8 9.6E-20 3.3E-24 179.5 8.4 108 482-590 31-146 (256)
101 3fvq_A Fe(3+) IONS import ATP- 99.8 1.4E-19 4.6E-24 185.6 9.5 111 481-591 19-139 (359)
102 1ji0_A ABC transporter; ATP bi 99.8 8.1E-20 2.8E-24 178.8 7.5 108 482-589 22-138 (240)
103 2cbz_A Multidrug resistance-as 99.8 9.5E-20 3.2E-24 177.9 6.3 109 481-602 20-128 (237)
104 3rlf_A Maltose/maltodextrin im 99.8 1.9E-19 6.4E-24 185.8 8.7 109 481-591 18-134 (381)
105 2onk_A Molybdate/tungstate ABC 99.8 2.4E-19 8.2E-24 175.1 8.9 106 482-590 15-126 (240)
106 1g6h_A High-affinity branched- 99.8 2E-19 6.8E-24 177.9 8.4 109 482-590 23-153 (257)
107 2yyz_A Sugar ABC transporter, 99.8 2.3E-19 7.8E-24 184.5 9.0 107 482-590 19-133 (359)
108 2ihy_A ABC transporter, ATP-bi 99.8 1.2E-19 4E-24 181.2 6.6 109 482-590 37-161 (279)
109 2yz2_A Putative ABC transporte 99.8 2E-19 6.8E-24 178.8 7.9 108 481-591 22-139 (266)
110 1v43_A Sugar-binding transport 99.8 4E-19 1.4E-23 183.6 10.1 106 482-589 27-140 (372)
111 1tq4_A IIGP1, interferon-induc 99.8 4E-21 1.4E-25 201.1 -5.8 168 199-417 37-247 (413)
112 1z47_A CYSA, putative ABC-tran 99.8 2.1E-19 7E-24 184.4 7.0 107 482-590 31-145 (355)
113 2it1_A 362AA long hypothetical 99.8 2.3E-19 7.8E-24 184.7 7.3 107 482-590 19-133 (362)
114 1b0u_A Histidine permease; ABC 99.8 1.7E-19 5.6E-24 178.8 6.0 109 482-590 22-153 (262)
115 3d31_A Sulfate/molybdate ABC t 99.8 2.8E-19 9.5E-24 183.3 7.6 108 481-590 15-127 (348)
116 1oxx_K GLCV, glucose, ABC tran 99.8 2.3E-19 7.8E-24 184.6 6.4 110 481-590 20-140 (353)
117 2bbs_A Cystic fibrosis transme 99.8 3.8E-19 1.3E-23 178.3 6.8 108 481-602 53-160 (290)
118 1g29_1 MALK, maltose transport 99.7 1E-18 3.4E-23 181.0 7.7 107 482-590 19-139 (372)
119 2o5v_A DNA replication and rep 99.7 1.5E-17 5.2E-22 171.2 14.6 79 351-434 267-354 (359)
120 3b9q_A Chloroplast SRP recepto 99.7 9.7E-19 3.3E-23 176.6 4.9 171 204-425 93-284 (302)
121 2pjz_A Hypothetical protein ST 99.7 2.1E-18 7.1E-23 170.5 6.4 104 481-590 20-128 (263)
122 2d2e_A SUFC protein; ABC-ATPas 99.7 1.6E-18 5.5E-23 170.6 5.3 108 482-589 19-141 (250)
123 3qkt_A DNA double-strand break 99.7 7E-17 2.4E-21 166.6 17.6 74 346-421 247-327 (339)
124 3sop_A Neuronal-specific septi 99.7 4.7E-19 1.6E-23 176.2 -0.8 150 214-411 4-153 (270)
125 2dpy_A FLII, flagellum-specifi 99.7 6.6E-19 2.3E-23 186.6 -0.4 180 200-436 147-344 (438)
126 2og2_A Putative signal recogni 99.7 8.8E-18 3E-22 172.7 6.5 171 204-425 150-341 (359)
127 2zu0_C Probable ATP-dependent 99.7 7.8E-18 2.7E-22 167.3 5.6 108 481-588 35-161 (267)
128 1znw_A Guanylate kinase, GMP k 99.7 1.2E-18 4E-23 167.0 -1.0 176 207-421 16-202 (207)
129 2nq2_C Hypothetical ABC transp 99.7 1.4E-17 4.9E-22 163.9 6.1 96 482-590 21-128 (253)
130 2eyu_A Twitching motility prot 99.7 3.5E-18 1.2E-22 169.1 0.4 130 200-421 16-146 (261)
131 1tf7_A KAIC; homohexamer, hexa 99.7 6.5E-17 2.2E-21 176.7 10.4 78 344-424 350-444 (525)
132 1cr0_A DNA primase/helicase; R 99.7 5.3E-17 1.8E-21 164.4 8.9 179 200-425 24-237 (296)
133 2i3b_A HCR-ntpase, human cance 99.7 1.1E-18 3.6E-23 164.1 -4.7 158 213-429 2-169 (189)
134 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 5.1E-16 1.7E-20 139.4 10.3 79 345-425 55-142 (148)
135 2ehv_A Hypothetical protein PH 99.6 1.9E-16 6.5E-21 156.0 6.8 161 209-422 28-207 (251)
136 3thx_A DNA mismatch repair pro 99.6 4.1E-16 1.4E-20 178.3 8.4 83 352-434 724-811 (934)
137 2obl_A ESCN; ATPase, hydrolase 99.6 1.2E-16 4E-21 164.3 2.7 183 200-435 61-254 (347)
138 2o8b_B DNA mismatch repair pro 99.6 9E-16 3.1E-20 177.7 7.4 73 353-426 854-930 (1022)
139 4a74_A DNA repair and recombin 99.6 3.3E-15 1.1E-19 145.1 8.7 70 354-423 105-200 (231)
140 2w0m_A SSO2452; RECA, SSPF, un 99.5 1.6E-14 5.6E-19 140.3 10.8 156 208-424 20-193 (235)
141 3aez_A Pantothenate kinase; tr 99.5 8E-16 2.7E-20 156.0 0.0 152 213-422 91-244 (312)
142 1ewq_A DNA mismatch repair pro 99.5 2.8E-15 9.7E-20 168.5 3.8 132 198-414 566-704 (765)
143 3thx_B DNA mismatch repair pro 99.5 1.2E-14 4E-19 165.8 7.7 64 352-416 738-804 (918)
144 1rj9_A FTSY, signal recognitio 99.5 9.1E-15 3.1E-19 147.5 6.1 56 213-268 103-164 (304)
145 3kta_B Chromosome segregation 99.5 3.5E-14 1.2E-18 130.7 8.7 78 346-425 63-146 (173)
146 3szr_A Interferon-induced GTP- 99.5 1.5E-15 5E-20 168.1 -2.3 162 213-432 46-233 (608)
147 2f1r_A Molybdopterin-guanine d 99.5 1E-15 3.5E-20 141.0 -4.4 56 213-268 3-69 (171)
148 3jvv_A Twitching mobility prot 99.5 1.8E-14 6.1E-19 148.5 3.4 58 359-422 188-245 (356)
149 1pzn_A RAD51, DNA repair and r 99.4 5.5E-14 1.9E-18 145.0 6.8 158 206-433 126-312 (349)
150 3asz_A Uridine kinase; cytidin 99.4 3.6E-15 1.2E-19 143.0 -4.1 55 354-408 98-161 (211)
151 4ad8_A DNA repair protein RECN 99.4 1.2E-13 4.1E-18 150.5 7.4 73 351-423 399-473 (517)
152 2jeo_A Uridine-cytidine kinase 99.4 2.3E-14 7.9E-19 140.8 0.0 158 197-411 11-168 (245)
153 1wb9_A DNA mismatch repair pro 99.4 2.4E-13 8.1E-18 153.8 8.0 75 353-427 672-749 (800)
154 1lvg_A Guanylate kinase, GMP k 99.4 5.9E-15 2E-19 140.1 -5.3 151 213-422 5-173 (198)
155 1lw7_A Transcriptional regulat 99.4 3E-14 1E-18 148.5 -2.0 147 203-407 160-328 (365)
156 1nlf_A Regulatory protein REPA 99.4 2.3E-12 8E-17 129.0 11.7 65 342-411 113-184 (279)
157 2gza_A Type IV secretion syste 99.4 1E-14 3.4E-19 151.3 -6.1 76 484-561 167-246 (361)
158 2qnr_A Septin-2, protein NEDD5 99.3 3.6E-13 1.2E-17 136.1 5.1 152 200-409 13-168 (301)
159 2f1r_A Molybdopterin-guanine d 99.3 5.3E-14 1.8E-18 129.6 -1.0 89 493-598 3-103 (171)
160 2v9p_A Replication protein E1; 99.3 5.2E-14 1.8E-18 141.2 -1.2 73 483-577 117-190 (305)
161 2ewv_A Twitching motility prot 99.3 1E-13 3.5E-18 144.2 0.8 119 213-420 137-256 (372)
162 2cvh_A DNA repair and recombin 99.3 1.6E-12 5.3E-17 125.1 9.0 71 353-423 90-185 (220)
163 1htw_A HI0065; nucleotide-bind 99.3 1.1E-13 3.7E-18 125.8 0.8 72 484-561 25-96 (158)
164 1pui_A ENGB, probable GTP-bind 99.3 5.1E-13 1.7E-17 127.6 5.0 48 346-395 148-196 (210)
165 2qag_C Septin-7; cell cycle, c 99.3 2.3E-13 8E-18 142.8 2.2 55 353-411 122-180 (418)
166 2gza_A Type IV secretion syste 99.3 1.4E-13 4.8E-18 142.7 -0.7 125 213-423 176-302 (361)
167 1nij_A Hypothetical protein YJ 99.3 6.3E-14 2.2E-18 142.9 -3.3 155 213-411 5-192 (318)
168 1s96_A Guanylate kinase, GMP k 99.3 1.1E-12 3.8E-17 126.0 5.4 144 209-435 14-159 (219)
169 3sop_A Neuronal-specific septi 99.3 2.4E-13 8.1E-18 135.0 -0.6 67 494-563 4-71 (270)
170 1z6g_A Guanylate kinase; struc 99.3 1.1E-12 3.7E-17 126.3 3.5 91 482-579 13-115 (218)
171 3b85_A Phosphate starvation-in 99.2 1E-12 3.5E-17 125.1 1.3 56 490-549 20-75 (208)
172 1u0l_A Probable GTPase ENGC; p 99.2 2.5E-12 8.5E-17 130.1 3.9 102 487-589 164-290 (301)
173 2npi_A Protein CLP1; CLP1-PCF1 99.2 2.4E-13 8.2E-18 144.7 -4.5 92 484-584 130-231 (460)
174 3auy_A DNA double-strand break 99.2 2.1E-11 7.2E-16 127.1 9.4 71 351-421 282-359 (371)
175 1n0w_A DNA repair protein RAD5 99.2 3.3E-11 1.1E-15 117.6 10.2 37 213-249 25-68 (243)
176 1zp6_A Hypothetical protein AT 99.2 6.7E-12 2.3E-16 117.9 4.3 52 213-268 10-61 (191)
177 1sxj_E Activator 1 40 kDa subu 99.2 2.7E-11 9.1E-16 125.5 9.0 139 215-412 39-178 (354)
178 3b9q_A Chloroplast SRP recepto 99.2 3.8E-12 1.3E-16 128.3 2.5 77 484-560 92-176 (302)
179 2bdt_A BH3686; alpha-beta prot 99.2 3E-13 1E-17 127.2 -5.6 77 352-434 97-182 (189)
180 2ewv_A Twitching motility prot 99.2 6.9E-12 2.4E-16 130.4 3.0 90 487-580 131-233 (372)
181 1w1w_A Structural maintenance 99.2 3.6E-11 1.2E-15 127.9 8.5 71 351-421 335-410 (430)
182 1tq4_A IIGP1, interferon-induc 99.2 4.4E-12 1.5E-16 132.6 0.9 90 483-583 40-149 (413)
183 1znw_A Guanylate kinase, GMP k 99.1 1.2E-11 4.1E-16 118.0 3.6 70 487-560 15-85 (207)
184 1lvg_A Guanylate kinase, GMP k 99.1 5E-12 1.7E-16 119.7 0.7 81 490-578 2-95 (198)
185 3aez_A Pantothenate kinase; tr 99.1 1.7E-11 6E-16 124.0 4.2 75 488-579 86-166 (312)
186 2og2_A Putative signal recogni 99.1 1.2E-11 4.1E-16 127.0 2.6 77 484-560 149-233 (359)
187 1lw7_A Transcriptional regulat 99.1 2.4E-12 8.4E-17 133.9 -3.4 103 484-588 160-273 (365)
188 3lda_A DNA repair protein RAD5 99.1 1.5E-10 5.2E-15 120.8 9.9 55 213-267 179-241 (400)
189 3e70_C DPA, signal recognition 99.1 2.6E-10 8.9E-15 116.0 11.0 56 213-268 130-191 (328)
190 3ec2_A DNA replication protein 99.1 8.2E-11 2.8E-15 109.5 6.4 46 365-410 98-145 (180)
191 2qag_B Septin-6, protein NEDD5 99.1 4.1E-11 1.4E-15 125.1 4.4 171 201-407 30-218 (427)
192 2yhs_A FTSY, cell division pro 99.1 2.5E-11 8.5E-16 128.3 2.4 77 484-560 285-368 (503)
193 2eyu_A Twitching motility prot 99.1 2.2E-11 7.4E-16 120.2 1.6 86 489-578 22-120 (261)
194 3tr0_A Guanylate kinase, GMP k 99.1 7E-11 2.4E-15 112.2 4.2 71 486-560 1-72 (205)
195 2kjq_A DNAA-related protein; s 99.0 2.8E-10 9.5E-15 102.3 7.4 42 365-407 81-124 (149)
196 1rj9_A FTSY, signal recognitio 99.0 9.2E-11 3.2E-15 118.2 4.4 70 491-560 101-177 (304)
197 2yv5_A YJEQ protein; hydrolase 99.0 6.7E-11 2.3E-15 119.5 3.2 100 488-589 161-286 (302)
198 1s96_A Guanylate kinase, GMP k 99.0 4.2E-11 1.4E-15 115.0 1.3 86 488-577 12-107 (219)
199 2qm8_A GTPase/ATPase; G protei 99.0 2.4E-11 8.3E-16 124.6 -1.1 69 201-270 45-117 (337)
200 2bbw_A Adenylate kinase 4, AK4 99.0 2.2E-12 7.4E-17 126.7 -9.4 37 213-249 28-67 (246)
201 3c8u_A Fructokinase; YP_612366 99.0 8.1E-12 2.8E-16 119.3 -5.4 38 213-250 23-63 (208)
202 2yhs_A FTSY, cell division pro 99.0 2.8E-10 9.7E-15 120.3 5.8 65 203-268 285-355 (503)
203 2qm8_A GTPase/ATPase; G protei 99.0 7.2E-11 2.5E-15 121.0 1.2 70 484-553 47-120 (337)
204 2rcn_A Probable GTPase ENGC; Y 99.0 1.8E-10 6.1E-15 117.9 4.0 96 491-592 214-316 (358)
205 2dpy_A FLII, flagellum-specifi 99.0 6.2E-11 2.1E-15 125.5 0.2 76 484-560 150-235 (438)
206 2qag_B Septin-6, protein NEDD5 99.0 1.6E-10 5.5E-15 120.7 3.2 76 482-565 30-108 (427)
207 4e22_A Cytidylate kinase; P-lo 99.0 6.9E-11 2.4E-15 116.3 -0.1 100 490-595 25-142 (252)
208 3euj_A Chromosome partition pr 98.9 2.3E-10 7.8E-15 121.5 3.4 68 482-550 20-95 (483)
209 2pt7_A CAG-ALFA; ATPase, prote 98.9 2.2E-10 7.4E-15 117.1 2.0 62 484-547 163-224 (330)
210 2jeo_A Uridine-cytidine kinase 98.9 2.8E-10 9.5E-15 111.5 2.7 65 482-560 15-79 (245)
211 3asz_A Uridine kinase; cytidin 98.9 5E-10 1.7E-14 106.9 4.4 85 489-597 3-94 (211)
212 1t9h_A YLOQ, probable GTPase E 98.9 2.4E-10 8.1E-15 114.8 1.4 95 487-583 168-288 (307)
213 3szr_A Interferon-induced GTP- 98.9 2.4E-10 8.1E-15 126.4 1.4 72 486-560 42-118 (608)
214 3e70_C DPA, signal recognition 98.9 5.3E-10 1.8E-14 113.7 3.6 73 488-560 125-204 (328)
215 1htw_A HI0065; nucleotide-bind 98.9 1.2E-10 4.1E-15 105.6 -1.5 50 200-251 22-71 (158)
216 2i3b_A HCR-ntpase, human cance 98.9 2.9E-10 9.9E-15 106.4 0.9 54 492-549 1-54 (189)
217 1ls1_A Signal recognition part 98.9 6.4E-09 2.2E-13 104.4 10.4 110 213-395 99-209 (295)
218 1udx_A The GTP-binding protein 98.9 1.1E-09 3.7E-14 114.8 4.9 37 200-237 146-182 (416)
219 1ypw_A Transitional endoplasmi 98.9 6.4E-10 2.2E-14 126.9 3.1 62 486-549 505-566 (806)
220 1odf_A YGR205W, hypothetical 3 98.8 6E-11 2.1E-15 118.8 -4.9 38 343-384 130-169 (290)
221 1qhl_A Protein (cell division 98.8 1.6E-10 5.3E-15 111.1 -2.2 62 486-548 22-91 (227)
222 1zp6_A Hypothetical protein AT 98.8 4.6E-10 1.6E-14 105.3 0.9 68 488-560 5-72 (191)
223 2rcn_A Probable GTPase ENGC; Y 98.8 1.7E-09 6E-14 110.6 4.7 52 213-268 216-269 (358)
224 4a74_A DNA repair and recombin 98.8 1.1E-09 3.7E-14 105.8 2.7 70 488-563 21-97 (231)
225 1p9r_A General secretion pathw 98.8 1.8E-10 6.3E-15 120.9 -3.2 39 213-251 168-206 (418)
226 1oix_A RAS-related protein RAB 98.8 3.9E-09 1.3E-13 99.0 5.7 37 356-394 152-188 (191)
227 2x8a_A Nuclear valosin-contain 98.8 1.4E-10 4.8E-15 115.5 -4.6 64 201-269 36-99 (274)
228 3euj_A Chromosome partition pr 98.8 2E-09 6.9E-14 114.2 3.8 54 200-255 19-72 (483)
229 1sq5_A Pantothenate kinase; P- 98.8 1.2E-09 4.1E-14 110.7 1.5 66 489-559 77-148 (308)
230 1vma_A Cell division protein F 98.8 8.4E-09 2.9E-13 103.8 7.1 38 213-250 105-142 (306)
231 4aby_A DNA repair protein RECN 98.7 2E-09 6.8E-14 113.9 1.9 73 482-555 51-162 (415)
232 2dr3_A UPF0273 protein PH0284; 98.7 7.2E-08 2.5E-12 93.9 11.4 57 366-422 127-196 (247)
233 2px0_A Flagellar biosynthesis 98.7 1.7E-08 5.9E-13 101.2 7.0 71 353-427 170-246 (296)
234 2obl_A ESCN; ATPase, hydrolase 98.7 9.8E-09 3.4E-13 105.3 4.6 64 484-548 64-134 (347)
235 3lnc_A Guanylate kinase, GMP k 98.7 5.3E-09 1.8E-13 101.3 2.4 64 484-552 19-84 (231)
236 1ye8_A Protein THEP1, hypothet 98.7 3.9E-09 1.3E-13 97.8 1.3 51 494-549 2-52 (178)
237 2ius_A DNA translocase FTSK; n 98.7 6.8E-09 2.3E-13 111.0 3.0 48 204-252 160-209 (512)
238 3c8u_A Fructokinase; YP_612366 98.6 8.8E-09 3E-13 98.1 3.3 53 489-560 19-71 (208)
239 4gp7_A Metallophosphoesterase; 98.6 6.9E-09 2.4E-13 95.5 2.3 43 485-527 2-56 (171)
240 1cke_A CK, MSSA, protein (cyti 98.6 1.1E-09 3.7E-14 105.7 -3.5 97 492-594 5-119 (227)
241 1pzn_A RAD51, DNA repair and r 98.6 7.4E-09 2.5E-13 106.6 2.2 73 485-563 124-203 (349)
242 1nij_A Hypothetical protein YJ 98.6 5.7E-09 2E-13 106.1 1.1 71 493-563 5-102 (318)
243 1mky_A Probable GTP-binding pr 98.6 1.2E-07 4.1E-12 100.9 11.3 60 493-552 181-252 (439)
244 1p9r_A General secretion pathw 98.6 1.6E-08 5.3E-13 106.2 4.1 94 490-583 165-288 (418)
245 2ehv_A Hypothetical protein PH 98.6 3.7E-09 1.3E-13 103.4 -0.9 63 488-551 26-90 (251)
246 3ney_A 55 kDa erythrocyte memb 98.6 1.8E-08 6E-13 94.4 3.4 85 485-577 12-109 (197)
247 1kgd_A CASK, peripheral plasma 98.6 1.4E-08 4.7E-13 94.3 2.4 80 491-576 4-94 (180)
248 1u0l_A Probable GTPase ENGC; p 98.6 2E-08 6.8E-13 101.3 3.5 58 213-270 170-230 (301)
249 2zr9_A Protein RECA, recombina 98.5 6.5E-07 2.2E-11 91.9 13.9 74 356-429 126-236 (349)
250 3tr0_A Guanylate kinase, GMP k 98.5 3.2E-08 1.1E-12 93.7 3.8 60 207-271 3-62 (205)
251 2f9l_A RAB11B, member RAS onco 98.5 1.4E-07 4.6E-12 88.9 7.9 35 358-394 130-164 (199)
252 3a00_A Guanylate kinase, GMP k 98.5 2.7E-08 9.3E-13 92.8 2.6 27 492-518 1-27 (186)
253 2oap_1 GSPE-2, type II secreti 98.5 3.8E-08 1.3E-12 106.0 3.6 46 484-529 252-297 (511)
254 4dcu_A GTP-binding protein ENG 98.5 5.7E-07 1.9E-11 96.1 12.5 57 353-411 88-144 (456)
255 2x8a_A Nuclear valosin-contain 98.5 2.2E-08 7.4E-13 99.6 0.9 75 484-562 38-114 (274)
256 1e69_A Chromosome segregation 98.5 4.8E-08 1.7E-12 99.5 3.6 77 484-561 17-144 (322)
257 4eun_A Thermoresistant glucoki 98.5 2.4E-08 8.3E-13 94.3 1.0 61 487-552 24-84 (200)
258 1qhl_A Protein (cell division 98.5 5.7E-09 2E-13 100.2 -3.6 55 213-267 28-90 (227)
259 2j41_A Guanylate kinase; GMP, 98.5 8E-08 2.7E-12 90.9 4.1 63 487-552 1-63 (207)
260 2r6a_A DNAB helicase, replicat 98.4 2.3E-07 8E-12 99.0 7.9 172 200-425 192-401 (454)
261 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 1.8E-09 6.1E-14 112.1 -8.5 62 367-430 139-207 (392)
262 3kta_A Chromosome segregation 98.4 8.4E-08 2.9E-12 89.0 3.7 98 484-582 19-137 (182)
263 2bdt_A BH3686; alpha-beta prot 98.4 4.3E-08 1.5E-12 91.6 1.3 59 492-559 2-61 (189)
264 2yv5_A YJEQ protein; hydrolase 98.4 8.6E-08 2.9E-12 96.6 2.6 57 213-270 166-225 (302)
265 2bbw_A Adenylate kinase 4, AK4 98.4 1.5E-08 5.1E-13 99.1 -3.0 66 491-560 26-95 (246)
266 1ls1_A Signal recognition part 98.4 5.5E-09 1.9E-13 105.0 -6.6 110 387-532 26-138 (295)
267 3lnc_A Guanylate kinase, GMP k 98.4 9.7E-08 3.3E-12 92.3 2.4 38 200-238 16-54 (231)
268 1pui_A ENGB, probable GTP-bind 98.3 7E-08 2.4E-12 91.5 0.3 40 486-525 20-64 (210)
269 4e22_A Cytidylate kinase; P-lo 98.3 9.3E-08 3.2E-12 93.8 0.8 56 213-268 28-95 (252)
270 1sq5_A Pantothenate kinase; P- 98.3 2.7E-07 9.2E-12 93.3 3.7 51 213-268 81-136 (308)
271 3uie_A Adenylyl-sulfate kinase 98.3 9.7E-08 3.3E-12 90.1 0.3 47 485-532 18-66 (200)
272 1cr0_A DNA primase/helicase; R 98.3 1E-07 3.5E-12 95.8 0.3 64 483-549 26-90 (296)
273 2dy1_A Elongation factor G; tr 98.3 3.4E-07 1.2E-11 102.2 4.2 104 486-590 3-110 (665)
274 1iy2_A ATP-dependent metallopr 98.3 1E-08 3.5E-13 102.3 -7.6 52 215-268 76-127 (278)
275 3a00_A Guanylate kinase, GMP k 98.2 2.8E-07 9.7E-12 85.8 2.4 25 213-237 2-26 (186)
276 2vp4_A Deoxynucleoside kinase; 98.2 8.1E-08 2.8E-12 92.9 -1.5 64 486-553 14-87 (230)
277 1n0w_A DNA repair protein RAD5 98.2 2.8E-07 9.6E-12 89.4 2.3 61 488-548 20-88 (243)
278 2qag_C Septin-7; cell cycle, c 98.2 4.4E-07 1.5E-11 95.1 3.9 71 483-563 28-99 (418)
279 2qnr_A Septin-2, protein NEDD5 98.2 4.2E-07 1.4E-11 91.5 3.4 69 484-562 16-86 (301)
280 1t9h_A YLOQ, probable GTPase E 98.2 1.7E-07 5.9E-12 94.0 0.4 57 213-270 174-233 (307)
281 3cr8_A Sulfate adenylyltranfer 98.2 7.5E-08 2.6E-12 104.5 -2.5 88 487-579 364-468 (552)
282 1ixz_A ATP-dependent metallopr 98.2 1.6E-08 5.6E-13 99.3 -7.3 52 215-268 52-103 (254)
283 2ce7_A Cell division protein F 98.2 4.6E-06 1.6E-10 88.8 11.0 61 352-412 93-168 (476)
284 3k1j_A LON protease, ATP-depen 98.2 5.4E-07 1.8E-11 99.8 3.8 62 201-268 50-112 (604)
285 3jvv_A Twitching mobility prot 98.2 2.5E-07 8.4E-12 95.1 0.9 59 487-549 118-177 (356)
286 3uie_A Adenylyl-sulfate kinase 98.2 8.4E-07 2.9E-11 83.6 4.3 38 213-251 26-65 (200)
287 1in4_A RUVB, holliday junction 98.2 4.8E-08 1.6E-12 100.1 -5.3 67 493-560 52-122 (334)
288 1jjv_A Dephospho-COA kinase; P 98.1 2E-06 6.8E-11 81.3 5.8 67 352-421 62-131 (206)
289 1zu4_A FTSY; GTPase, signal re 98.1 7.8E-07 2.7E-11 90.1 1.9 67 484-550 97-173 (320)
290 1ewq_A DNA mismatch repair pro 98.1 9.7E-07 3.3E-11 99.3 2.7 62 486-562 571-634 (765)
291 2qtf_A Protein HFLX, GTP-bindi 98.1 5.5E-06 1.9E-10 85.4 8.1 38 213-250 180-228 (364)
292 2dy1_A Elongation factor G; tr 98.1 4.3E-06 1.5E-10 93.3 7.9 55 213-268 10-66 (665)
293 1odf_A YGR205W, hypothetical 3 98.1 1.2E-06 4.1E-11 87.5 2.8 55 490-560 29-83 (290)
294 3lda_A DNA repair protein RAD5 98.1 9.7E-07 3.3E-11 92.0 2.0 60 488-547 174-241 (400)
295 2w0m_A SSO2452; RECA, SSPF, un 98.1 6E-07 2.1E-11 86.3 0.3 59 488-549 19-80 (235)
296 2oap_1 GSPE-2, type II secreti 98.1 6.6E-07 2.3E-11 96.4 0.6 37 213-249 261-297 (511)
297 3tau_A Guanylate kinase, GMP k 98.0 1.5E-06 5E-11 82.6 2.5 29 490-518 6-34 (208)
298 4eun_A Thermoresistant glucoki 98.0 1.9E-06 6.4E-11 81.2 3.1 51 213-268 30-80 (200)
299 2qt1_A Nicotinamide riboside k 98.0 2.9E-06 1E-10 80.3 4.3 44 488-554 17-60 (207)
300 1iy2_A ATP-dependent metallopr 98.0 5.8E-07 2E-11 89.4 -0.8 74 484-561 67-142 (278)
301 1rz3_A Hypothetical protein rb 98.0 2E-06 6.7E-11 81.2 2.8 46 488-533 18-63 (201)
302 3hr8_A Protein RECA; alpha and 98.0 7.3E-06 2.5E-10 83.8 7.2 52 213-267 62-114 (356)
303 1ixz_A ATP-dependent metallopr 98.0 6.3E-07 2.1E-11 87.9 -0.7 73 484-560 43-117 (254)
304 1knq_A Gluconate kinase; ALFA/ 98.0 2.4E-06 8.3E-11 78.4 3.1 54 490-549 6-60 (175)
305 1oix_A RAS-related protein RAB 98.0 1.7E-06 5.8E-11 80.7 1.8 38 494-531 31-79 (191)
306 3ney_A 55 kDa erythrocyte memb 98.0 3E-06 1E-10 79.2 3.3 48 213-262 20-80 (197)
307 1in4_A RUVB, holliday junction 98.0 2.4E-07 8.2E-12 94.8 -4.6 37 213-249 52-92 (334)
308 2kjq_A DNAA-related protein; s 98.0 5.1E-06 1.7E-10 74.2 4.6 40 491-531 35-76 (149)
309 1kgd_A CASK, peripheral plasma 98.0 2E-06 6.9E-11 79.5 2.0 33 213-245 6-39 (180)
310 2o8b_B DNA mismatch repair pro 98.0 2E-06 6.7E-11 99.9 2.3 56 482-560 772-835 (1022)
311 2xau_A PRE-mRNA-splicing facto 97.9 8.4E-06 2.9E-10 92.5 7.0 63 351-413 192-257 (773)
312 1sxj_E Activator 1 40 kDa subu 97.9 5.7E-06 2E-10 85.1 3.5 56 494-551 38-94 (354)
313 3kta_A Chromosome segregation 97.8 7.3E-06 2.5E-10 75.7 3.5 40 202-243 18-57 (182)
314 3t34_A Dynamin-related protein 97.8 3.6E-05 1.2E-09 79.4 9.0 42 200-245 26-69 (360)
315 1cke_A CK, MSSA, protein (cyti 97.8 1.1E-06 3.9E-11 84.3 -2.6 56 213-268 6-73 (227)
316 3ec2_A DNA replication protein 97.8 3.1E-06 1E-10 78.2 0.4 38 485-522 31-68 (180)
317 2e87_A Hypothetical protein PH 97.8 3.1E-05 1.1E-09 79.8 7.7 57 352-409 234-293 (357)
318 1vma_A Cell division protein F 97.8 7.3E-06 2.5E-10 82.3 2.8 64 485-548 97-166 (306)
319 2pez_A Bifunctional 3'-phospho 97.8 3.8E-06 1.3E-10 77.4 0.6 41 490-531 3-45 (179)
320 1ni3_A YCHF GTPase, YCHF GTP-b 97.8 1.1E-05 3.6E-10 83.7 3.7 41 488-528 16-68 (392)
321 1svm_A Large T antigen; AAA+ f 97.8 6.6E-06 2.3E-10 84.9 2.0 61 484-552 161-221 (377)
322 2f9l_A RAB11B, member RAS onco 97.8 1.1E-05 3.8E-10 75.6 3.3 37 494-530 7-54 (199)
323 1udx_A The GTP-binding protein 97.8 1.4E-05 4.8E-10 83.6 4.3 33 484-516 149-181 (416)
324 2j41_A Guanylate kinase; GMP, 97.7 1.3E-05 4.4E-10 75.5 3.4 29 213-241 7-35 (207)
325 3kl4_A SRP54, signal recogniti 97.7 0.00011 3.9E-09 76.9 10.8 38 213-250 98-135 (433)
326 1rz3_A Hypothetical protein rb 97.7 9.8E-06 3.4E-10 76.3 2.3 42 213-254 23-64 (201)
327 1nlf_A Regulatory protein REPA 97.7 1.4E-05 4.7E-10 79.4 3.5 34 488-523 26-59 (279)
328 2hjg_A GTP-binding protein ENG 97.7 3.9E-05 1.3E-09 81.3 7.2 23 494-516 177-199 (436)
329 2vp4_A Deoxynucleoside kinase; 97.7 1.8E-05 6.1E-10 76.2 3.0 35 213-251 21-55 (230)
330 3vaa_A Shikimate kinase, SK; s 97.6 2E-05 6.9E-10 73.9 3.0 35 482-516 15-49 (199)
331 2z4s_A Chromosomal replication 97.6 3.5E-05 1.2E-09 81.7 5.2 66 366-431 193-263 (440)
332 2px0_A Flagellar biosynthesis 97.6 1.9E-05 6.4E-10 79.1 2.8 42 490-531 103-145 (296)
333 3vaa_A Shikimate kinase, SK; s 97.6 1.9E-05 6.5E-10 74.1 2.7 39 197-236 11-49 (199)
334 2dhr_A FTSH; AAA+ protein, hex 97.6 2.9E-06 9.9E-11 90.9 -3.5 52 215-268 67-118 (499)
335 3tqc_A Pantothenate kinase; bi 97.6 2.8E-05 9.7E-10 78.3 3.9 32 494-525 94-127 (321)
336 3tau_A Guanylate kinase, GMP k 97.6 1.7E-05 5.8E-10 75.1 2.2 26 213-238 9-34 (208)
337 1zu4_A FTSY; GTPase, signal re 97.6 9.4E-06 3.2E-10 82.1 0.3 49 203-252 97-145 (320)
338 3b9p_A CG5977-PA, isoform A; A 97.6 0.00041 1.4E-08 69.2 12.1 61 352-412 98-173 (297)
339 2o5v_A DNA replication and rep 97.5 6.3E-05 2.1E-09 77.1 5.4 31 483-514 18-48 (359)
340 3tqc_A Pantothenate kinase; bi 97.5 3.9E-05 1.3E-09 77.3 3.5 37 213-249 93-131 (321)
341 1knq_A Gluconate kinase; ALFA/ 97.5 3.2E-05 1.1E-09 70.8 2.6 35 213-251 9-43 (175)
342 2www_A Methylmalonic aciduria 97.5 3.3E-05 1.1E-09 79.2 2.7 41 491-531 73-113 (349)
343 1fnn_A CDC6P, cell division co 97.5 0.00045 1.5E-08 71.5 11.1 44 366-410 124-171 (389)
344 1kag_A SKI, shikimate kinase I 97.5 5E-05 1.7E-09 69.2 3.3 32 492-527 4-35 (173)
345 3cr8_A Sulfate adenylyltranfer 97.5 2.7E-05 9.4E-10 84.4 1.4 38 213-250 370-409 (552)
346 3nwj_A ATSK2; P loop, shikimat 97.4 2E-05 6.9E-10 76.6 0.2 35 482-516 35-72 (250)
347 3thx_A DNA mismatch repair pro 97.4 6.4E-05 2.2E-09 86.2 4.1 38 484-521 654-699 (934)
348 2dhr_A FTSH; AAA+ protein, hex 97.4 5.6E-05 1.9E-09 80.9 3.1 74 484-561 58-133 (499)
349 3k1j_A LON protease, ATP-depen 97.4 5.3E-05 1.8E-09 83.7 2.9 60 485-549 53-113 (604)
350 3m6a_A ATP-dependent protease 97.4 3.9E-05 1.3E-09 83.6 1.7 64 485-549 102-165 (543)
351 4a1f_A DNAB helicase, replicat 97.4 0.0005 1.7E-08 69.7 9.6 36 200-236 35-70 (338)
352 1w1w_A Structural maintenance 97.4 8.1E-05 2.8E-09 78.7 3.8 36 486-521 20-55 (430)
353 1wb9_A DNA mismatch repair pro 97.4 7.9E-05 2.7E-09 84.3 3.9 34 482-516 598-631 (800)
354 3cmw_A Protein RECA, recombina 97.4 0.0027 9.1E-08 76.7 17.0 40 489-528 729-769 (1706)
355 2cvh_A DNA repair and recombin 97.3 7.8E-05 2.7E-09 70.7 3.0 39 488-528 16-54 (220)
356 3thx_B DNA mismatch repair pro 97.3 5.7E-05 1.9E-09 86.4 2.1 35 481-515 662-696 (918)
357 3lxx_A GTPase IMAP family memb 97.3 0.00063 2.2E-08 65.5 9.3 28 214-241 31-58 (239)
358 2p67_A LAO/AO transport system 97.3 5.5E-05 1.9E-09 77.4 1.8 46 485-530 49-94 (341)
359 1m7g_A Adenylylsulfate kinase; 97.3 4.1E-05 1.4E-09 72.5 0.5 45 487-531 20-66 (211)
360 4ad8_A DNA repair protein RECN 97.3 5E-05 1.7E-09 82.3 1.3 68 483-551 52-158 (517)
361 2z43_A DNA repair and recombin 97.3 0.0014 4.8E-08 66.3 11.9 24 213-236 108-131 (324)
362 1kag_A SKI, shikimate kinase I 97.3 0.0001 3.5E-09 67.1 2.8 26 213-238 5-30 (173)
363 1svm_A Large T antigen; AAA+ f 97.3 3.4E-05 1.2E-09 79.6 -0.6 60 200-268 158-217 (377)
364 3qf7_A RAD50; ABC-ATPase, ATPa 97.2 0.00013 4.3E-09 75.3 3.5 32 483-515 15-46 (365)
365 2dr3_A UPF0273 protein PH0284; 97.2 4.6E-05 1.6E-09 73.7 -0.1 63 486-549 17-80 (247)
366 3hr8_A Protein RECA; alpha and 97.2 0.00016 5.5E-09 73.8 3.8 61 488-551 57-118 (356)
367 2qtf_A Protein HFLX, GTP-bindi 97.2 0.00018 6.2E-09 74.0 4.2 53 491-549 177-241 (364)
368 2gj8_A MNME, tRNA modification 97.2 0.00023 7.9E-09 64.8 4.1 41 490-530 2-54 (172)
369 3nwj_A ATSK2; P loop, shikimat 97.2 0.00012 4E-09 71.2 2.1 24 213-236 49-72 (250)
370 4eaq_A DTMP kinase, thymidylat 97.1 0.00018 6.2E-09 69.0 3.2 41 484-525 15-58 (229)
371 4fcw_A Chaperone protein CLPB; 97.1 0.0007 2.4E-08 67.8 7.6 30 213-242 48-77 (311)
372 2qby_A CDC6 homolog 1, cell di 97.1 0.00059 2E-08 70.4 7.1 27 213-239 46-72 (386)
373 2pez_A Bifunctional 3'-phospho 97.1 0.00011 3.6E-09 67.6 1.2 37 213-250 6-44 (179)
374 1v5w_A DMC1, meiotic recombina 97.1 0.00097 3.3E-08 68.1 8.5 23 213-235 123-145 (343)
375 1lv7_A FTSH; alpha/beta domain 97.1 0.0019 6.6E-08 62.8 10.3 25 213-237 46-70 (257)
376 2ffh_A Protein (FFH); SRP54, s 97.1 0.0023 7.8E-08 66.9 11.2 40 213-252 99-138 (425)
377 2qor_A Guanylate kinase; phosp 97.1 0.00011 3.9E-09 69.0 1.2 29 489-517 9-37 (204)
378 1f2t_A RAD50 ABC-ATPase; DNA d 97.1 0.00033 1.1E-08 62.3 4.2 29 485-514 17-45 (149)
379 2ffh_A Protein (FFH); SRP54, s 97.1 0.00026 8.8E-09 74.1 3.6 47 484-532 92-138 (425)
380 2www_A Methylmalonic aciduria 97.0 0.00016 5.4E-09 74.1 1.7 40 213-252 75-114 (349)
381 3r20_A Cytidylate kinase; stru 97.0 8.2E-05 2.8E-09 71.3 -0.8 69 493-561 10-96 (233)
382 1jjv_A Dephospho-COA kinase; P 97.0 0.0003 1E-08 66.0 3.1 29 494-527 4-32 (206)
383 4eaq_A DTMP kinase, thymidylat 97.0 0.00031 1.1E-08 67.3 3.2 47 199-247 11-60 (229)
384 3h4m_A Proteasome-activating n 97.0 0.0027 9.4E-08 62.6 10.3 24 213-236 52-75 (285)
385 1l8q_A Chromosomal replication 97.0 0.0022 7.7E-08 64.7 9.8 25 213-237 38-62 (324)
386 1j8m_F SRP54, signal recogniti 97.0 0.0002 6.8E-09 71.5 1.8 47 485-532 92-138 (297)
387 1mky_A Probable GTP-binding pr 96.9 0.0003 1E-08 74.5 2.9 39 213-251 181-231 (439)
388 1f2t_A RAD50 ABC-ATPase; DNA d 96.9 0.00041 1.4E-08 61.7 3.3 23 213-235 24-46 (149)
389 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00037 1.3E-08 72.0 3.4 41 488-528 18-69 (396)
390 3cf2_A TER ATPase, transitiona 96.9 0.0042 1.4E-07 70.0 12.1 29 489-517 508-536 (806)
391 2yvu_A Probable adenylyl-sulfa 96.9 0.00034 1.2E-08 64.6 2.8 43 488-530 9-52 (186)
392 1sxj_C Activator 1 40 kDa subu 96.9 0.00082 2.8E-08 68.5 5.8 27 215-241 49-75 (340)
393 2w58_A DNAI, primosome compone 96.9 0.0013 4.5E-08 61.3 6.6 25 213-237 55-79 (202)
394 2qt1_A Nicotinamide riboside k 96.8 0.00058 2E-08 64.2 3.7 25 213-237 22-46 (207)
395 1m7g_A Adenylylsulfate kinase; 96.8 0.00019 6.6E-09 67.8 0.3 37 213-249 26-64 (211)
396 2wji_A Ferrous iron transport 96.8 0.00086 2.9E-08 60.3 4.7 23 494-516 5-27 (165)
397 3cf0_A Transitional endoplasmi 96.8 0.0046 1.6E-07 61.7 10.3 24 213-236 50-73 (301)
398 3t34_A Dynamin-related protein 96.8 0.00048 1.7E-08 70.9 2.9 41 484-527 29-71 (360)
399 3t61_A Gluconokinase; PSI-biol 96.8 0.00046 1.6E-08 64.6 2.5 35 492-530 18-52 (202)
400 1u94_A RECA protein, recombina 96.8 0.018 6E-07 58.9 14.5 27 209-236 61-87 (356)
401 1np6_A Molybdopterin-guanine d 96.8 0.00057 1.9E-08 62.4 3.0 37 493-529 7-46 (174)
402 3m6a_A ATP-dependent protease 96.8 0.00061 2.1E-08 74.1 3.7 61 213-273 109-169 (543)
403 2wjg_A FEOB, ferrous iron tran 96.8 0.00065 2.2E-08 62.4 3.4 22 494-515 9-30 (188)
404 1ypw_A Transitional endoplasmi 96.8 0.00019 6.6E-09 81.7 -0.4 63 485-549 231-293 (806)
405 2if2_A Dephospho-COA kinase; a 96.8 0.00059 2E-08 63.9 3.0 21 494-514 3-23 (204)
406 1y63_A LMAJ004144AAA protein; 96.7 0.00066 2.3E-08 62.6 3.1 32 484-515 2-33 (184)
407 2p67_A LAO/AO transport system 96.7 0.00018 6.2E-09 73.5 -0.9 38 213-250 57-94 (341)
408 2qor_A Guanylate kinase; phosp 96.7 0.00033 1.1E-08 65.8 0.7 25 213-237 13-37 (204)
409 2ius_A DNA translocase FTSK; n 96.7 0.0013 4.6E-08 70.2 5.3 50 484-533 159-210 (512)
410 1njg_A DNA polymerase III subu 96.7 0.0015 5E-08 62.3 5.0 45 367-412 126-170 (250)
411 3t61_A Gluconokinase; PSI-biol 96.6 0.0005 1.7E-08 64.3 1.6 33 213-249 19-51 (202)
412 3bh0_A DNAB-like replicative h 96.6 0.0045 1.6E-07 62.2 8.7 50 352-406 136-189 (315)
413 2if2_A Dephospho-COA kinase; a 96.6 0.00081 2.8E-08 62.9 2.9 21 214-234 3-23 (204)
414 2p5t_B PEZT; postsegregational 96.6 0.00098 3.4E-08 64.9 3.3 42 488-531 28-69 (253)
415 1np6_A Molybdopterin-guanine d 96.6 0.00088 3E-08 61.2 2.6 37 213-249 7-46 (174)
416 1m2o_B GTP-binding protein SAR 96.5 0.0014 4.9E-08 60.5 4.0 46 485-531 17-70 (190)
417 2wji_A Ferrous iron transport 96.5 0.0018 6.3E-08 58.1 4.6 24 214-237 5-28 (165)
418 1sxj_C Activator 1 40 kDa subu 96.5 0.00033 1.1E-08 71.5 -0.5 60 487-546 39-101 (340)
419 1ega_A Protein (GTP-binding pr 96.5 0.0011 3.7E-08 66.4 3.1 25 491-515 7-31 (301)
420 2gj8_A MNME, tRNA modification 96.5 0.0018 6.2E-08 58.7 4.3 24 213-236 5-28 (172)
421 3llm_A ATP-dependent RNA helic 96.4 0.0082 2.8E-07 57.5 8.8 125 212-405 76-215 (235)
422 2zej_A Dardarin, leucine-rich 96.4 0.0014 4.7E-08 60.2 3.1 23 494-516 4-26 (184)
423 3qks_A DNA double-strand break 96.4 0.0019 6.6E-08 60.5 4.2 28 485-513 17-44 (203)
424 1f6b_A SAR1; gtpases, N-termin 96.4 0.0011 3.8E-08 61.7 2.5 45 485-530 19-71 (198)
425 3qks_A DNA double-strand break 96.4 0.0015 5.1E-08 61.3 3.3 23 213-235 24-46 (203)
426 3qkt_A DNA double-strand break 96.4 0.0017 5.9E-08 66.1 4.0 31 485-516 17-48 (339)
427 2wjg_A FEOB, ferrous iron tran 96.4 0.0014 4.9E-08 60.0 3.0 23 213-235 8-30 (188)
428 2q6t_A DNAB replication FORK h 96.4 0.037 1.3E-06 58.4 14.2 37 201-238 190-226 (444)
429 2yvu_A Probable adenylyl-sulfa 96.4 0.0012 4.2E-08 60.7 2.4 32 213-244 14-45 (186)
430 3lxw_A GTPase IMAP family memb 96.4 0.019 6.5E-07 55.4 10.9 108 215-410 24-151 (247)
431 3d8b_A Fidgetin-like protein 1 96.3 0.016 5.3E-07 59.4 10.8 24 213-236 118-141 (357)
432 3cm0_A Adenylate kinase; ATP-b 96.3 0.0019 6.6E-08 59.2 3.5 26 490-515 2-27 (186)
433 2zr9_A Protein RECA, recombina 96.3 0.0021 7.1E-08 65.7 3.8 59 488-549 57-116 (349)
434 3n70_A Transport activator; si 96.3 0.013 4.4E-07 51.5 8.5 89 215-407 27-115 (145)
435 1lv7_A FTSH; alpha/beta domain 96.3 0.0016 5.6E-08 63.3 2.8 43 486-532 41-83 (257)
436 1jal_A YCHF protein; nucleotid 96.3 0.0029 1E-07 64.6 4.7 36 492-527 2-48 (363)
437 2zej_A Dardarin, leucine-rich 96.3 0.0018 6.3E-08 59.3 2.9 25 214-238 4-28 (184)
438 3lxx_A GTPase IMAP family memb 96.2 0.0027 9.4E-08 61.0 4.0 28 494-521 31-58 (239)
439 2ohf_A Protein OLA1, GTP-bindi 96.2 0.0023 7.9E-08 66.0 3.4 35 213-247 23-68 (396)
440 1sxj_D Activator 1 41 kDa subu 96.2 0.0035 1.2E-07 63.8 4.6 44 367-411 133-176 (353)
441 1m2o_B GTP-binding protein SAR 96.2 0.0033 1.1E-07 57.9 4.1 32 201-234 14-45 (190)
442 1q3t_A Cytidylate kinase; nucl 96.1 0.0026 9E-08 61.0 3.4 27 489-515 13-39 (236)
443 1uf9_A TT1252 protein; P-loop, 96.1 0.0028 9.7E-08 58.9 3.5 30 493-527 9-38 (203)
444 3ice_A Transcription terminati 96.1 0.002 6.8E-08 65.7 2.5 34 484-517 166-199 (422)
445 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.024 8.2E-07 54.8 10.1 24 213-236 40-63 (262)
446 3ihw_A Centg3; RAS, centaurin, 96.1 0.0055 1.9E-07 56.1 5.1 37 494-530 22-67 (184)
447 3kb2_A SPBC2 prophage-derived 96.1 0.0028 9.5E-08 57.2 3.0 23 214-236 3-25 (173)
448 3kl4_A SRP54, signal recogniti 96.0 0.0025 8.6E-08 66.7 2.9 41 491-531 96-136 (433)
449 1qhx_A CPT, protein (chloramph 96.0 0.0035 1.2E-07 57.0 3.4 26 492-517 3-28 (178)
450 3dm5_A SRP54, signal recogniti 96.0 0.044 1.5E-06 57.3 12.1 33 213-245 101-133 (443)
451 2p5t_B PEZT; postsegregational 96.0 0.0026 9E-08 61.8 2.7 36 213-250 33-68 (253)
452 1j8m_F SRP54, signal recogniti 96.0 0.0019 6.5E-08 64.4 1.6 39 213-251 99-137 (297)
453 3kb2_A SPBC2 prophage-derived 96.0 0.003 1E-07 57.0 2.8 23 494-516 3-25 (173)
454 2jaq_A Deoxyguanosine kinase; 96.0 0.0036 1.2E-07 58.2 3.4 23 494-516 2-24 (205)
455 1gtv_A TMK, thymidylate kinase 96.0 0.0013 4.3E-08 62.0 0.1 26 214-239 2-27 (214)
456 1xjc_A MOBB protein homolog; s 95.9 0.003 1E-07 57.1 2.6 34 494-527 6-42 (169)
457 1y63_A LMAJ004144AAA protein; 95.9 0.0031 1.1E-07 58.0 2.8 23 213-235 11-33 (184)
458 2ze6_A Isopentenyl transferase 95.9 0.0039 1.3E-07 60.6 3.4 24 494-517 3-26 (253)
459 1uf9_A TT1252 protein; P-loop, 95.9 0.0035 1.2E-07 58.3 2.9 30 213-247 9-38 (203)
460 2jaq_A Deoxyguanosine kinase; 95.9 0.0034 1.2E-07 58.3 2.9 24 214-237 2-25 (205)
461 3r20_A Cytidylate kinase; stru 95.9 0.0014 4.8E-08 62.7 0.1 24 213-236 10-33 (233)
462 1f6b_A SAR1; gtpases, N-termin 95.9 0.0066 2.3E-07 56.3 4.7 21 214-234 27-47 (198)
463 1via_A Shikimate kinase; struc 95.8 0.0039 1.3E-07 56.7 2.8 23 494-516 6-28 (175)
464 2v1u_A Cell division control p 95.8 0.015 5.2E-07 59.6 7.7 24 213-236 45-68 (387)
465 1qhx_A CPT, protein (chloramph 95.8 0.0041 1.4E-07 56.5 2.9 25 213-237 4-28 (178)
466 1ex7_A Guanylate kinase; subst 95.8 0.0038 1.3E-07 57.5 2.6 23 214-236 3-25 (186)
467 1vht_A Dephospho-COA kinase; s 95.8 0.0053 1.8E-07 58.0 3.6 23 492-514 4-26 (218)
468 2ze6_A Isopentenyl transferase 95.7 0.0041 1.4E-07 60.4 2.8 24 213-236 2-25 (253)
469 1fzq_A ADP-ribosylation factor 95.7 0.0046 1.6E-07 56.4 3.0 38 493-530 17-62 (181)
470 3lw7_A Adenylate kinase relate 95.7 0.0046 1.6E-07 55.7 3.0 20 213-232 2-21 (179)
471 3syl_A Protein CBBX; photosynt 95.7 0.075 2.5E-06 52.7 12.2 24 213-236 68-91 (309)
472 3lw7_A Adenylate kinase relate 95.7 0.005 1.7E-07 55.4 3.2 19 494-512 3-21 (179)
473 1gvn_B Zeta; postsegregational 95.7 0.008 2.7E-07 59.5 4.6 36 490-527 31-66 (287)
474 1gtv_A TMK, thymidylate kinase 95.7 0.0015 5.1E-08 61.4 -0.7 25 494-518 2-26 (214)
475 2ga8_A Hypothetical 39.9 kDa p 95.6 0.0022 7.6E-08 64.9 0.5 33 485-517 15-49 (359)
476 2qag_A Septin-2, protein NEDD5 95.6 0.0045 1.5E-07 63.5 2.8 27 495-521 40-66 (361)
477 3ihw_A Centg3; RAS, centaurin, 95.6 0.0098 3.3E-07 54.4 4.8 28 214-241 22-54 (184)
478 1kht_A Adenylate kinase; phosp 95.6 0.0061 2.1E-07 55.9 3.3 25 492-516 3-27 (192)
479 4b4t_L 26S protease subunit RP 95.6 0.067 2.3E-06 55.9 11.5 22 215-236 218-239 (437)
480 1via_A Shikimate kinase; struc 95.5 0.0057 2E-07 55.5 2.8 23 214-236 6-28 (175)
481 1vht_A Dephospho-COA kinase; s 95.5 0.0057 1.9E-07 57.7 2.9 22 213-234 5-26 (218)
482 3cm0_A Adenylate kinase; ATP-b 95.5 0.0061 2.1E-07 55.8 3.0 24 213-236 5-28 (186)
483 1ex7_A Guanylate kinase; subst 95.5 0.0066 2.3E-07 55.9 3.1 22 495-516 4-25 (186)
484 4b4t_M 26S protease regulatory 95.5 0.083 2.8E-06 55.1 11.7 22 215-236 218-239 (434)
485 2chg_A Replication factor C sm 95.5 0.029 9.8E-07 52.3 7.6 44 367-411 102-145 (226)
486 3auy_A DNA double-strand break 95.5 0.0098 3.3E-07 61.3 4.6 31 202-234 17-47 (371)
487 1xwi_A SKD1 protein; VPS4B, AA 95.5 0.1 3.4E-06 52.4 12.1 24 213-236 46-69 (322)
488 1ega_A Protein (GTP-binding pr 95.5 0.0062 2.1E-07 60.8 3.0 23 213-235 9-31 (301)
489 1fzq_A ADP-ribosylation factor 95.5 0.0077 2.6E-07 54.9 3.4 23 213-235 17-39 (181)
490 2v54_A DTMP kinase, thymidylat 95.5 0.008 2.7E-07 55.9 3.6 26 491-516 3-28 (204)
491 3trf_A Shikimate kinase, SK; a 95.5 0.0073 2.5E-07 55.2 3.2 25 492-516 5-29 (185)
492 2rhm_A Putative kinase; P-loop 95.4 0.0068 2.3E-07 55.8 3.0 27 490-516 3-29 (193)
493 1jal_A YCHF protein; nucleotid 95.4 0.0088 3E-07 61.0 4.1 35 213-247 3-48 (363)
494 4ag6_A VIRB4 ATPase, type IV s 95.4 0.0074 2.5E-07 62.7 3.5 36 491-526 34-69 (392)
495 4ag6_A VIRB4 ATPase, type IV s 95.4 0.006 2.1E-07 63.4 2.8 34 213-246 36-69 (392)
496 1gvn_B Zeta; postsegregational 95.4 0.009 3.1E-07 59.2 3.9 33 213-247 34-66 (287)
497 1ly1_A Polynucleotide kinase; 95.4 0.0071 2.4E-07 54.9 2.9 20 214-233 4-23 (181)
498 3iij_A Coilin-interacting nucl 95.4 0.0057 1.9E-07 55.8 2.2 27 490-516 9-35 (180)
499 3k53_A Ferrous iron transport 95.4 0.0069 2.4E-07 59.4 3.0 23 494-516 5-27 (271)
500 3cf0_A Transitional endoplasmi 95.4 0.0073 2.5E-07 60.3 3.1 42 486-529 43-84 (301)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.6e-79 Score=733.25 Aligned_cols=400 Identities=23% Similarity=0.293 Sum_probs=276.2
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHH--
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVF-- 77 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-- 77 (602)
.+.+.|+..+||.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.++..++ +..+.+
T Consensus 161 ~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~l 240 (1321)
T 4f4c_A 161 LYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTL 240 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999877666666665555443322 111111
Q ss_pred HHHHHHHHHHHH---HHH---HHHHHHHHHhhcccchhhhhcchh----HH-------HHHHHHHHhhh----------h
Q psy3001 78 FYGFVISLGTLF---AAK---RLHEKLLKSMLRWSPLFFDTTPVG----RV-------LSRFSSDVNTL----------D 130 (602)
Q Consensus 78 ~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~-------~~r~~~~~~~~----------~ 130 (602)
+....+|+..+. ..+ +...+..+...+ ....+.|...| +. .++|.+..... .
T Consensus 241 v~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1321)
T 4f4c_A 241 VMLAVTPIQALCGFAIAKSMSTFAIRETLRYAK-AGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFL 319 (1321)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112221111 111 111222222222 12234444444 11 13333211110 0
Q ss_pred h-------HH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy3001 131 N-------KL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA 181 (602)
Q Consensus 131 ~-------~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 181 (602)
. .+ .++.+. ++.+...+..|+..+...+..++++..+++|+.++++.+++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 399 (1321)
T 4f4c_A 320 GISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVI 399 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 0 00 011222 223344456677778888899999999999999999876554
Q ss_pred ccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEEC
Q psy3001 182 EWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246 (602)
Q Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~ 246 (602)
+.... ......+..+.++|+||+|+|+.. ++.+||||+||||||||+++|.|+|+|++|+|.+|
T Consensus 400 ~~~~~-~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~id 478 (1321)
T 4f4c_A 400 DSSSK-AGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITID 478 (1321)
T ss_dssp SCSSS-CCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEET
T ss_pred ccccc-ccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCC
Confidence 32111 111222345678888888888531 27899999999999999999999999999999999
Q ss_pred CeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHH
Q psy3001 247 GVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVAT 325 (602)
Q Consensus 247 g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 325 (602)
|+|+++++...+|++|+||+|+ |++| .++++.| +..... ...++...+.
T Consensus 479 G~~i~~~~~~~lr~~i~~v~Q~-----------~~Lf-------------~~TI~eN------I~~g~~~~~~~~v~~a~ 528 (1321)
T 4f4c_A 479 GVDVRDINLEFLRKNVAVVSQE-----------PALF-------------NCTIEEN------ISLGKEGITREEMVAAC 528 (1321)
T ss_dssp TEETTTSCHHHHHHHEEEECSS-----------CCCC-------------SEEHHHH------HHTTCTTCCHHHHHHHH
T ss_pred CccchhccHHHHhhcccccCCc-----------ceee-------------CCchhHH------HhhhcccchHHHHHHHH
Confidence 9999999999999999999998 7776 3333332 221111 1111111111
Q ss_pred HH-H-HHHHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEE
Q psy3001 326 SR-Q-LKRLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTV 401 (602)
Q Consensus 326 ~~-~-~~~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tv 401 (602)
.. . .+.++ ..+.+..+++.|.+|| |||||||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+
T Consensus 529 ~~a~l~~~i~~lp~G~~T~vGe~G~~LS--GGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~ 606 (1321)
T 4f4c_A 529 KMANAEKFIKTLPNGYNTLVGDRGTQLS--GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTT 606 (1321)
T ss_dssp HHTTCHHHHHHSTTTTSSEESSSSCCCC--HHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEE
T ss_pred HHccchhHHHcCCCCCccEecCCCCCCC--HHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEE
Confidence 11 0 11122 1234556788888999 59999999999999999999999999999999999999999998889999
Q ss_pred EEeeecccccccCCeEEEEeCceEEeecChhHHhh
Q psy3001 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 402 i~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
|+||||++++..||+|++|++|+|++.|+|+++++
T Consensus 607 iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 607 IIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred EEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 99999999999999999999999999999998864
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.7e-73 Score=673.62 Aligned_cols=401 Identities=22% Similarity=0.310 Sum_probs=270.0
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---H--HH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTI---T--VF 77 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~ 77 (602)
...+.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++.++..++++. + .+
T Consensus 133 ~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l 212 (1284)
T 3g5u_A 133 CLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTL 212 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999988877777776655544332111 1 11
Q ss_pred HHHHHHHHHHHH---HH---HHHHHHHHHHhhcccchhhhhcchh-H----------HHHHHHHHHhhhh----------
Q psy3001 78 FYGFVISLGTLF---AA---KRLHEKLLKSMLRWSPLFFDTTPVG-R----------VLSRFSSDVNTLD---------- 130 (602)
Q Consensus 78 ~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~g-~----------~~~r~~~~~~~~~---------- 130 (602)
+..+++|+..+. .. .+...+..+...+ ....+.|...| + ..++|.+..+...
T Consensus 213 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1284)
T 3g5u_A 213 VILAISPVLGLSAGIWAKILSSFTDKELHAYAK-AGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITA 291 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222211 11 1222222333333 22345566555 1 1134433111100
Q ss_pred hH-------H-------HH------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy3001 131 NK-------L-------TL------------SVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA 181 (602)
Q Consensus 131 ~~-------~-------~~------------~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 181 (602)
.. + .. +.+.+ +.+......++..+...+..++.+..+++|+.++++.+++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 371 (1284)
T 3g5u_A 292 NISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSI 371 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 00 0 00 00111 11122334456666777888899999999999999876543
Q ss_pred ccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEEC
Q psy3001 182 EWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246 (602)
Q Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~ 246 (602)
+..... .....+..+.++|+||+|+|+.+ ++++|||||||||||||+++|+|+++|++|+|.+|
T Consensus 372 ~~~~~~-~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~ 450 (1284)
T 3g5u_A 372 DSFSKS-GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450 (1284)
T ss_dssp SSCCSS-CCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEET
T ss_pred Cccccc-CCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 221111 11111224567777777777421 27899999999999999999999999999999999
Q ss_pred CeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHH
Q psy3001 247 GVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVAT 325 (602)
Q Consensus 247 g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 325 (602)
|+|+..++...+|++|++|+|+ |++| .+++.. ++..... ...++.....
T Consensus 451 g~~i~~~~~~~~r~~i~~v~Q~-----------~~l~-------------~~ti~e------Ni~~g~~~~~~~~~~~~~ 500 (1284)
T 3g5u_A 451 GQDIRTINVRYLREIIGVVSQE-----------PVLF-------------ATTIAE------NIRYGREDVTMDEIEKAV 500 (1284)
T ss_dssp TEEGGGSCHHHHHHHEEEECSS-----------CCCC-------------SSCHHH------HHHHHCSSCCHHHHHHHH
T ss_pred CEEHHhCCHHHHHhheEEEcCC-----------CccC-------------CccHHH------HHhcCCCCCCHHHHHHHH
Confidence 9999999999999999999998 4444 222222 1111000 0111111111
Q ss_pred HH--HHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEE
Q psy3001 326 SR--QLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTV 401 (602)
Q Consensus 326 ~~--~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tv 401 (602)
.. ..+.+.. .+.+..+++.|.+|| |||||||+|||||+++|+|||||||||+||+++++.+.+.++...+++|+
T Consensus 501 ~~~~~~~~i~~l~~g~~t~~~~~g~~LS--gGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~ 578 (1284)
T 3g5u_A 501 KEANAYDFIMKLPHQFDTLVGERGAQLS--GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTT 578 (1284)
T ss_dssp HHTTCHHHHHHSTTGGGCCCSSSSCSSC--HHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEE
T ss_pred HHhCcHHHHHhccccccccccCCCCccC--HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 10 0111111 123344677788888 59999999999999999999999999999999999999999888789999
Q ss_pred EEeeecccccccCCeEEEEeCceEEeecChhHHhhc
Q psy3001 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 402 i~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
|+||||++++..||+|++|++|++++.|+++++++.
T Consensus 579 i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 579 IVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp EEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT
T ss_pred EEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999989999999999999999999998754
No 3
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=1.4e-55 Score=526.87 Aligned_cols=414 Identities=22% Similarity=0.298 Sum_probs=273.8
Q ss_pred cchhhHHHHHHHHHHHHHHHcCccccccc--ccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHH-
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDT--TPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV---TITV- 76 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~--~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~- 76 (602)
...+.++++++|.++|++++++|++||+. +++|++++|+++|++.++..++..+..++..++.++..+++ ..+.
T Consensus 819 ~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l 898 (1321)
T 4f4c_A 819 GIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQM 898 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHH
Confidence 45678999999999999999999999985 78999999999999999998877777777666555443321 1111
Q ss_pred -HHHHHHHHHHHHHHHH------HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------
Q psy3001 77 -FFYGFVISLGTLFAAK------RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT---------- 128 (602)
Q Consensus 77 -~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~---------- 128 (602)
++...++++..+.... ....+..+...+ ...++.|...| +++ +++.+..+.
T Consensus 899 ~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 977 (1321)
T 4f4c_A 899 ALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFAD-SGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAF 977 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHH-HHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222222211100 000011111111 11233444444 111 222221110
Q ss_pred hhhHH--------H------HHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3001 129 LDNKL--------T------LSVQQT-----------------LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGET 177 (602)
Q Consensus 129 ~~~~~--------~------~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~ 177 (602)
+.... . ..++.. +.+......++..+...+..++....+.+|+.++++.
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 1057 (1321)
T 4f4c_A 978 IQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRK 1057 (1321)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 00000 0 000000 0000001112334456778899999999999999987
Q ss_pred CcccccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCce
Q psy3001 178 PQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGT 242 (602)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~ 242 (602)
+++.+. ...+...|+..+.++|+||+|+|+.+ ++.+||||+||||||||+++|.|+|+|++|+
T Consensus 1058 ~~~~~~--~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1135 (1321)
T 4f4c_A 1058 ISKIDS--LSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE 1135 (1321)
T ss_dssp CCSSCT--TCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSE
T ss_pred cccCCC--ccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCE
Confidence 665432 22233346667889999999999532 2779999999999999999999999999999
Q ss_pred EEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHH
Q psy3001 243 IIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFY 322 (602)
Q Consensus 243 I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (602)
|.+||+|+++++...+|++|++|||+ |++| .++++.|-... ..+.....++..
T Consensus 1136 I~iDG~di~~i~~~~lR~~i~~V~Qd-----------p~LF-------------~gTIreNI~~g---ld~~~~sd~ei~ 1188 (1321)
T 4f4c_A 1136 IFIDGSEIKTLNPEHTRSQIAIVSQE-----------PTLF-------------DCSIAENIIYG---LDPSSVTMAQVE 1188 (1321)
T ss_dssp EEETTEETTTBCHHHHHTTEEEECSS-----------CCCC-------------SEEHHHHHSSS---SCTTTSCHHHHH
T ss_pred EEECCEEhhhCCHHHHHhheEEECCC-----------CEee-------------CccHHHHHhcc---CCCCCCCHHHHH
Confidence 99999999999999999999999998 6666 44444431100 000000111111
Q ss_pred HHHHH-HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccc
Q psy3001 323 VATSR-QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH 398 (602)
Q Consensus 323 ~~~~~-~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~ 398 (602)
.+... .+ +.+.. .+.+..+++.|.++| ||||||+||||||+++|+|||||||||+||+++++.+++.|++..++
T Consensus 1189 ~Al~~a~l~~~I~~Lp~GldT~vge~G~~LS--gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~ 1266 (1321)
T 4f4c_A 1189 EAARLANIHNFIAELPEGFETRVGDRGTQLS--GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREG 1266 (1321)
T ss_dssp HHHHHTTCHHHHHTSTTTTCSEETTTSCSSC--HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSS
T ss_pred HHHHHhCChHHHHcCcCCCCCEecCCCcccC--HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCC
Confidence 11110 11 11111 234556788888999 59999999999999999999999999999999999999999999899
Q ss_pred cEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhh
Q psy3001 399 CTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA 449 (602)
Q Consensus 399 ~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 449 (602)
+|+|+||||++++.+||||+||++|+|+|+|+|++++++ ++.|+.+++.+
T Consensus 1267 ~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q 1316 (1321)
T 4f4c_A 1267 RTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQ 1316 (1321)
T ss_dssp SEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C----------
T ss_pred CEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHH
Confidence 999999999999999999999999999999999999987 56787777543
No 4
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.3e-51 Score=456.06 Aligned_cols=407 Identities=21% Similarity=0.295 Sum_probs=269.9
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHH--HH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV---TITV--FF 78 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~ 78 (602)
..+.++..++|.++|+|++++|+.||+++++|++++|+++|++.++..+...+..++..++.++..+++ +.+. ++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~ 168 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSV 168 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999999998876666665554443332221 1110 11
Q ss_pred HHHHHHHHH---HHHHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhhhh-----------
Q psy3001 79 YGFVISLGT---LFAAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNTLD----------- 130 (602)
Q Consensus 79 ~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~~~----------- 130 (602)
..+.+++.. ....+ ....+..+...+ ....+.|...| +.+ ++|.+..+...
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (587)
T 3qf4_A 169 LIFLIPPIVLLFVWLTKKGNPLFRKIQESTDE-VNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIV 247 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 11111 111122222222 12234444444 111 22222111000
Q ss_pred ------hHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 131 ------NKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 131 ------~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
..+ .++++. ++.+...+..|+..+...+..++++..+.+|+.++++.+++.+
T Consensus 248 ~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 327 (587)
T 3qf4_A 248 FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE 327 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 000 001222 1223344556677777888889999999999999998765432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
.... .....+..+.++++||+|+|+++ +|++||+||||||||||+++|+|+++|++|+|.+||+
T Consensus 328 ~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~ 405 (587)
T 3qf4_A 328 EADN--ALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405 (587)
T ss_dssp CCTT--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSS
T ss_pred CCCC--ccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCE
Confidence 1111 11111233566777777776421 2889999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATS- 326 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 326 (602)
|+.+++...+|++++||||+ |.+| ..++..| +..... ...++......
T Consensus 406 ~i~~~~~~~~r~~i~~v~Q~-----------~~lf-------------~~tv~en------i~~~~~~~~~~~~~~~~~~ 455 (587)
T 3qf4_A 406 DVRTVKLKDLRGHISAVPQE-----------TVLF-------------SGTIKEN------LKWGREDATDDEIVEAAKI 455 (587)
T ss_dssp BGGGBCHHHHHHHEEEECSS-----------CCCC-------------SEEHHHH------HTTTCSSCCHHHHHHHHHH
T ss_pred EcccCCHHHHHhheEEECCC-----------CcCc-------------CccHHHH------HhccCCCCCHHHHHHHHHH
Confidence 99999999999999999998 4444 2222221 111100 01111111110
Q ss_pred -HHHHHHhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEE
Q psy3001 327 -RQLKRLESV--SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLT 403 (602)
Q Consensus 327 -~~~~~l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 403 (602)
...+.+..+ +.+...++.+.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+
T Consensus 456 ~~~~~~i~~l~~g~~~~~~~~~~~LS--gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 533 (587)
T 3qf4_A 456 AQIHDFIISLPEGYDSRVERGGRNFS--GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFI 533 (587)
T ss_dssp TTCHHHHHTSSSGGGCEECSSSCSSC--HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEE
T ss_pred hCcHHHHHhcccchhhHhcCCCCCcC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 011111111 33445677788888 5999999999999999999999999999999999999999998878999999
Q ss_pred eeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHH
Q psy3001 404 IAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
||||++.+..||||++|++|++++.|+++++++. .+.|..+.
T Consensus 534 itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~-~~~~~~~~ 575 (587)
T 3qf4_A 534 ITQKIPTALLADKILVLHEGKVAGFGTHKELLEH-CKPYREIY 575 (587)
T ss_dssp EESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred EecChHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHH
Confidence 9999999988999999999999999999999875 44555444
No 5
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=9.1e-52 Score=458.74 Aligned_cols=407 Identities=24% Similarity=0.356 Sum_probs=271.9
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHH--
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV---TITVFF-- 78 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-- 78 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++.++..+++ ..+.+.
T Consensus 103 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~ 182 (598)
T 3qf4_B 103 TLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLV 182 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999998876666666555444332221 111111
Q ss_pred HHHHHHHHHHH---HHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hh-
Q psy3001 79 YGFVISLGTLF---AAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LD- 130 (602)
Q Consensus 79 ~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~- 130 (602)
..+.+++..+. ..+ +...+..+...+ ....+.+...| +.+ ++|.+..+. ..
T Consensus 183 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (598)
T 3qf4_B 183 TLSIVPLTVLITQIVSSQTRKYFYENQRVLGQ-LNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSG 261 (598)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 111 111111222222 11234444444 111 223221110 00
Q ss_pred ------hHH-H------------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 131 ------NKL-T------------------LSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 131 ------~~~-~------------------~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
..+ . ++++. ++.+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 341 (598)
T 3qf4_B 262 VLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD 341 (598)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 000 0 01111 1222334566788888999999999999999999998766532
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
.. .....++..+.++++||+|+|+++ ++++||+||||||||||+++|+|+++|++|+|.+||+|
T Consensus 342 ~~---~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 418 (598)
T 3qf4_B 342 DP---DAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418 (598)
T ss_dssp CS---SCCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CC---CCCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEE
Confidence 11 111122334678888888888532 38899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHH--
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATS-- 326 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 326 (602)
+.+++...+|+++++|||+ |.+| ..++..| +..... ...++......
T Consensus 419 i~~~~~~~~r~~i~~v~Q~-----------~~lf-------------~~tv~en------i~~~~~~~~~~~~~~~~~~~ 468 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQD-----------TILF-------------STTVKEN------LKYGNPGATDEEIKEAAKLT 468 (598)
T ss_dssp GGGSCHHHHHHHEEEECTT-----------CCCC-------------SSBHHHH------HHSSSTTCCTTHHHHHTTTT
T ss_pred hhhCCHHHHHhceEEEeCC-----------Cccc-------------cccHHHH------HhcCCCCCCHHHHHHHHHHh
Confidence 9999999999999999998 4333 2222111 110000 00001100000
Q ss_pred HHHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 327 RQLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 327 ~~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
...+.++. .+.....++.|.++| ||||||++|||||+++|++||||||||+||++++..+.+.+++..+++|+|+|
T Consensus 469 ~~~~~~~~~~~g~~t~~~~~g~~LS--gGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i 546 (598)
T 3qf4_B 469 HSDHFIKHLPEGYETVLTDNGEDLS--QGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIII 546 (598)
T ss_dssp TCHHHHHTSTTGGGCBCHHHHTTSC--HHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHhccccccchhcCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 00011111 122334566677888 69999999999999999999999999999999999999999988788999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|||++.+..||+|++|++|++++.|+++++++. .+.|+.+..
T Consensus 547 tH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 588 (598)
T 3qf4_B 547 AHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFT 588 (598)
T ss_dssp SCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-TCHHHHHHH
T ss_pred ecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHH
Confidence 999999988999999999999999999999876 455655543
No 6
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=3.4e-51 Score=452.74 Aligned_cols=406 Identities=20% Similarity=0.282 Sum_probs=264.7
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHH--HH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITV--FF 78 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~ 78 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.++..++ ...+. ++
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~ 166 (578)
T 4a82_A 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45778899999999999999999999999999999999999999988765433333333322222111 11110 11
Q ss_pred HHHHHHHHH---HHHHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hh-
Q psy3001 79 YGFVISLGT---LFAAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LD- 130 (602)
Q Consensus 79 ~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~- 130 (602)
..+.+++.. ....+ +...+..+...+ ....+.|...| +.+ ++|.+.... ..
T Consensus 167 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (578)
T 4a82_A 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAE-VQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNA 245 (578)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 11111 111122222222 11234444444 111 222221110 00
Q ss_pred ------hHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 131 ------NKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 131 ------~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
..+ .++++. ++.+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 325 (578)
T 4a82_A 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK 325 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 000 001121 2223344556778888889999999999999999998765533
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEe---------------cCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYR---------------EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~---------------~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
..... ....+..+.++++||+|+|+ +| +++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 326 ~~~~~--~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 402 (578)
T 4a82_A 326 NGVGA--QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKG-ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG 402 (578)
T ss_dssp CCTTC--CCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETT
T ss_pred CCCCc--cccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC
Confidence 11111 11112234566666666664 33 88999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATS 326 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 326 (602)
+|+.+++...+|+++++|||+ |.+| .+++. +++..... ...++......
T Consensus 403 ~~~~~~~~~~~r~~i~~v~Q~-----------~~l~-------------~~tv~------eni~~~~~~~~~~~~~~~~~ 452 (578)
T 4a82_A 403 HNIKDFLTGSLRNQIGLVQQD-----------NILF-------------SDTVK------ENILLGRPTATDEEVVEAAK 452 (578)
T ss_dssp EEGGGSCHHHHHHTEEEECSS-----------CCCC-------------SSBHH------HHHGGGCSSCCHHHHHHHHH
T ss_pred EEhhhCCHHHHhhheEEEeCC-----------CccC-------------cccHH------HHHhcCCCCCCHHHHHHHHH
Confidence 999999999999999999998 4433 22222 22111100 01111111110
Q ss_pred H--HHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEE
Q psy3001 327 R--QLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVL 402 (602)
Q Consensus 327 ~--~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi 402 (602)
. ..+.+.. .+.+...++.|.++| ||||||++|||||+++|++|+||||||+||+++++.+.+.+++..+++|+|
T Consensus 453 ~~~~~~~~~~lp~g~~t~~~~~g~~LS--gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i 530 (578)
T 4a82_A 453 MANAHDFIMNLPQGYDTEVGERGVKLS--GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTL 530 (578)
T ss_dssp HTTCHHHHHTSTTGGGCBCCGGGTTSC--HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEE
T ss_pred HhCcHHHHHhCcchhhhhhccCCCcCC--HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0 0111111 123345667778888 599999999999999999999999999999999999999999887889999
Q ss_pred EeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHH
Q psy3001 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
+||||++.+..||+|++|++|++++.|+++++++. .+.|..+.
T Consensus 531 ~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~-~~~~~~~~ 573 (578)
T 4a82_A 531 IVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLY 573 (578)
T ss_dssp EECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHH
T ss_pred EEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHH
Confidence 99999999988999999999999999999999876 44555444
No 7
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.4e-49 Score=440.61 Aligned_cols=406 Identities=25% Similarity=0.332 Sum_probs=270.3
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFY- 79 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~- 79 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++.++..++ ++.+.+.+
T Consensus 91 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 170 (582)
T 3b5x_A 91 WVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLV 170 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45788999999999999999999999999999999999999999999877666666665554433222 11121111
Q ss_pred -HHHHHHHHHH---HHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh-------------
Q psy3001 80 -GFVISLGTLF---AAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT------------- 128 (602)
Q Consensus 80 -~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~------------- 128 (602)
.+.+++..+. ..+ +...+..+...+ ....+.+...| +.+ ++|.+..+.
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b5x_A 171 LIVVAPVVAFAISFVSKRFRKISRNMQTAMGH-VTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111211111 111 111111122122 11234444444 111 222221111
Q ss_pred ----hhhHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .++++. ++.+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b5x_A 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 00000 011222 2334455667888888999999999999999999998765432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
. ... ..++..+.++++||+|+|+++ ++++||+||||||||||+++|+|+++|++|+|.+||+
T Consensus 330 ~--~~~--~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b5x_A 330 N--GKY--EAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH 405 (582)
T ss_pred C--CCC--CCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE
Confidence 1 100 111223567777887777521 2789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHH
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATS 326 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 326 (602)
++.+.+...+|+++++|||+ |.+| ..++. +++.... ....++......
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~-----------~~l~-------------~~tv~------eni~~~~~~~~~~~~~~~~~~ 455 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQN-----------VHLF-------------NDTIA------NNIAYAAEGEYTREQIEQAAR 455 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCC-----------Cccc-------------cccHH------HHHhccCCCCCCHHHHHHHHH
Confidence 99999999999999999998 3333 11111 1111100 000011111000
Q ss_pred H-HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEE
Q psy3001 327 R-QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVL 402 (602)
Q Consensus 327 ~-~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi 402 (602)
. .+ +.++. .+.+...++.+.++| ||||||++|||||+++|++|+||||||+||+++++.+.+.+++..+++|+|
T Consensus 456 ~~~l~~~~~~~p~g~~t~~~~~~~~LS--gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi 533 (582)
T 3b5x_A 456 QAHAMEFIENMPQGLDTVIGENGTSLS--GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVL 533 (582)
T ss_pred HCCCHHHHHhCcccccchhcCCCCcCC--HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0 00 11111 123344566777888 599999999999999999999999999999999999999999887789999
Q ss_pred EeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
+||||++.+..||+|++|++|++++.|+++++++. .+.|..+.+
T Consensus 534 ~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 577 (582)
T 3b5x_A 534 VIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHR 577 (582)
T ss_pred EEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 99999999988999999999999999999999875 445555443
No 8
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.9e-49 Score=439.38 Aligned_cols=405 Identities=24% Similarity=0.343 Sum_probs=268.7
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHH--HH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV---TITV--FF 78 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~ 78 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++.++..+++ +.+. ++
T Consensus 91 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 170 (582)
T 3b60_A 91 WVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSII 170 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 357888999999999999999999999999999999999999999998776666666655544432221 1111 11
Q ss_pred HHHHHHHHHHH---HHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhhh------------
Q psy3001 79 YGFVISLGTLF---AAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNTL------------ 129 (602)
Q Consensus 79 ~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~~------------ 129 (602)
..+.+++..+. ..+ +...+..+...+ ....+.+...| +.+ ++|.+..+..
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b60_A 171 LVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ-VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 249 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 111 111111222222 11234444444 222 2222211110
Q ss_pred -----hhHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 130 -----DNKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 130 -----~~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
...+ .++++. ++.+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b60_A 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD 329 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 0000 012222 2334556677888888999999999999999999998765432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEe---------------cCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYR---------------EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~---------------~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
.... ..++..+.++++||+|+|+ +| +++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 330 ~~~~----~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G-~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 404 (582)
T 3b60_A 330 EGKR----VIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAG-KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404 (582)
T ss_dssp CCCB----CCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT
T ss_pred CCCC----CCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC
Confidence 1100 0111223455555555553 44 88999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVAT 325 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 325 (602)
+++.+++...+|+++++|||++ .+| ..+. .+++.... ....++.....
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~-----------~l~-------------~~tv------~eni~~~~~~~~~~~~~~~~l 454 (582)
T 3b60_A 405 HDLREYTLASLRNQVALVSQNV-----------HLF-------------NDTV------ANNIAYARTEEYSREQIEEAA 454 (582)
T ss_dssp EETTTBCHHHHHHTEEEECSSC-----------CCC-------------SSBH------HHHHHTTTTSCCCHHHHHHHH
T ss_pred EEccccCHHHHHhhCeEEccCC-----------cCC-------------CCCH------HHHHhccCCCCCCHHHHHHHH
Confidence 9999999999999999999983 333 1121 11111100 00001111100
Q ss_pred HH--HHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEE
Q psy3001 326 SR--QLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTV 401 (602)
Q Consensus 326 ~~--~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tv 401 (602)
.. ..+.++. .+.+...++.+.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+
T Consensus 455 ~~~~l~~~~~~~p~g~~~~~~~~~~~LS--gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tv 532 (582)
T 3b60_A 455 RMAYAMDFINKMDNGLDTIIGENGVLLS--GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTS 532 (582)
T ss_dssp HTTTCHHHHHHSTTGGGSBCCTTSCSSC--HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCHHHHHhccccccccccCCCCCCC--HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEE
Confidence 00 0011111 123345666778888 59999999999999999999999999999999999999999988778999
Q ss_pred EEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 402 i~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|+||||++.+..||+|++|++|++++.|+++++++. .+.|..+.+
T Consensus 533 i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 577 (582)
T 3b60_A 533 LVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHK 577 (582)
T ss_dssp EEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHHH
T ss_pred EEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHH
Confidence 999999999988999999999999999999999865 445554443
No 9
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=2.6e-49 Score=439.45 Aligned_cols=408 Identities=25% Similarity=0.343 Sum_probs=258.6
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHH--H
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVF--F 78 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~ 78 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++.++..++ ++.+.+ +
T Consensus 88 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 167 (595)
T 2yl4_A 88 TSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNLATF 167 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35678899999999999999999999999999999999999999998776655555555444333222 111111 1
Q ss_pred HHHHHHHHHHH---HHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hh-
Q psy3001 79 YGFVISLGTLF---AAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LD- 130 (602)
Q Consensus 79 ~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~- 130 (602)
..+.+++..+. ..+ +...+..+...+ ....+.+...| +.+ ++|.+..+. ..
T Consensus 168 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (595)
T 2yl4_A 168 VLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQ-ATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFARA 246 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 111 111111222222 11234444444 111 233221111 00
Q ss_pred ------hHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 131 ------NKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 131 ------~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
..+ .++++. ++.+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 326 (595)
T 2yl4_A 247 GFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPKLP 326 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 000 001122 2233445666788888889999999999999999998765432
Q ss_pred cccCCCCCCCCCCCCc-EEEeeeEEEE----------------ecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEE
Q psy3001 183 WVNDKKPKDEWPEKGE-VEFKDYKVRY----------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~-i~~~~vs~~~----------------~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i 245 (602)
......+ ..+..+. ++++||+|+| ++| +++||+||||||||||+++|+|+++|++|+|.+
T Consensus 327 ~~~~~~~--~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G-~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 403 (595)
T 2yl4_A 327 FNEGVIL--NEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSG-SVTALVGPSGSGKSTVLSLLLRLYDPASGTISL 403 (595)
T ss_dssp SSCSBCC--CTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTT-CEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCCCC--CcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEE
Confidence 1111000 0111234 6666666666 334 889999999999999999999999999999999
Q ss_pred CCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc----chhHHH
Q psy3001 246 DGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC----SNLQRF 321 (602)
Q Consensus 246 ~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 321 (602)
||+++.+++...+|+++++|||++ .+| ..+ +.+++..... ...++.
T Consensus 404 ~g~~i~~~~~~~~~~~i~~v~Q~~-----------~l~-------------~~t------v~eni~~~~~~~~~~~~~~~ 453 (595)
T 2yl4_A 404 DGHDIRQLNPVWLRSKIGTVSQEP-----------ILF-------------SCS------IAENIAYGADDPSSVTAEEI 453 (595)
T ss_dssp TTEETTTBCHHHHHHSEEEECSSC-----------CCC-------------SSB------HHHHHHTTSSSTTTSCHHHH
T ss_pred CCEEhhhCCHHHHHhceEEEccCC-----------ccc-------------CCC------HHHHHhhcCCCccccCHHHH
Confidence 999999999999999999999983 333 111 1111111000 011111
Q ss_pred HHHHHH-HH-HHHhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc
Q psy3001 322 YVATSR-QL-KRLESV--SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA 397 (602)
Q Consensus 322 ~~~~~~-~~-~~l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~ 397 (602)
...... .+ +.++.+ +.+..+++.+.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+
T Consensus 454 ~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LS--gGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~ 531 (595)
T 2yl4_A 454 QRVAEVANAVAFIRNFPQGFNTVVGEKGVLLS--GGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD 531 (595)
T ss_dssp HHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCC--HHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHhCcccccccccCCCCcCC--HHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc
Confidence 111100 00 111111 22334566677888 6999999999999999999999999999999999999999998877
Q ss_pred ccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 398 HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 398 ~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
++|+|+||||++.+..||+|++|++|++++.|+++++++...+.|..+..
T Consensus 532 ~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 581 (595)
T 2yl4_A 532 GRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMN 581 (595)
T ss_dssp TSEEEEECCCHHHHHHSSEEEEEETTEEEEEECSCC------C-------
T ss_pred CCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhCCChHHHHHHH
Confidence 89999999999998779999999999999999999998754555655543
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=8.9e-47 Score=449.97 Aligned_cols=415 Identities=21% Similarity=0.297 Sum_probs=266.3
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccc--cccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---H--
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFD--TTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTI---T-- 75 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~--~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~-- 75 (602)
...+.++..++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++..+..++..+++.. +
T Consensus 774 ~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l 853 (1284)
T 3g5u_A 774 GKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQL 853 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3467889999999999999999999999 58999999999999999999887777766666555443332110 0
Q ss_pred HHHHHHHHHHHHHH---HH---HHHHHHHHHHhhcccchhhhhcchh-----------HHHHHHHHHHhhh-----hh--
Q psy3001 76 VFFYGFVISLGTLF---AA---KRLHEKLLKSMLRWSPLFFDTTPVG-----------RVLSRFSSDVNTL-----DN-- 131 (602)
Q Consensus 76 ~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~r~~~~~~~~-----~~-- 131 (602)
.++....+|+..+. .. .....+..+...+ ....+.+...| +..+++....+.. ..
T Consensus 854 ~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~ 932 (1284)
T 3g5u_A 854 TLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEG-SGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122222111 11 1111111111111 11123333333 1222222211100 00
Q ss_pred H--HHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy3001 132 K--LTLSVQ------------------------------QTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQ 179 (602)
Q Consensus 132 ~--~~~~~~------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~ 179 (602)
. +...+. .++.+......++..+......++.+..+.+|+.++++.++
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1012 (1284)
T 3g5u_A 933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTP 1012 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 0 000000 00111111122233333334445677889999999998765
Q ss_pred ccccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceEE
Q psy3001 180 EAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244 (602)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~ 244 (602)
+.+.... .....++..+.++|+||+|+|+.+ +|++||+|+||||||||+++|+|+++|++|+|.
T Consensus 1013 ~~~~~~~-~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~ 1091 (1284)
T 3g5u_A 1013 EIDSYST-QGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091 (1284)
T ss_dssp SSSSCCS-SCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEE
T ss_pred ccccccc-ccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 5332111 111122335678888888888421 388999999999999999999999999999999
Q ss_pred ECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHH
Q psy3001 245 IDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVA 324 (602)
Q Consensus 245 i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (602)
+||+|++.++...+|+++++|||++ .+| ..++..|-..... .......+....
T Consensus 1092 i~g~~i~~~~~~~~r~~i~~v~Q~~-----------~l~-------------~~ti~eNi~~~~~---~~~~~~~~i~~~ 1144 (1284)
T 3g5u_A 1092 LDGKEIKQLNVQWLRAQLGIVSQEP-----------ILF-------------DCSIAENIAYGDN---SRVVSYEEIVRA 1144 (1284)
T ss_dssp SSSSCTTSSCHHHHTTSCEEEESSC-----------CCC-------------SSBHHHHHTCCCS---SCCCCHHHHHHH
T ss_pred ECCEEcccCCHHHHHhceEEECCCC-----------ccc-------------cccHHHHHhccCC---CCCCCHHHHHHH
Confidence 9999999999999999999999983 333 2222222111000 000011111111
Q ss_pred HHH-HHH-HHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccE
Q psy3001 325 TSR-QLK-RLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCT 400 (602)
Q Consensus 325 ~~~-~~~-~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 400 (602)
..+ .++ .+.. .+.+..+++.|.+|| ||||||++|||||+++|++||||||||+||+.+++.+.+.+++..+++|
T Consensus 1145 ~~~~~~~~~i~~l~~gldt~vge~G~~LS--gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~t 1222 (1284)
T 3g5u_A 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQLS--GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRT 1222 (1284)
T ss_dssp HHHHTCHHHHSSTTTGGGCBCSTTSCSSC--HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSC
T ss_pred HHHhCcHHHHHhCccccccccCCCCCccC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCE
Confidence 111 111 1111 122334566777888 6999999999999999999999999999999999999999998878899
Q ss_pred EEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhh
Q psy3001 401 VLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA 449 (602)
Q Consensus 401 vi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 449 (602)
+|+||||++++..||||++|++|++++.|+|+++++. .+.|+.++..+
T Consensus 1223 vi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q 1270 (1284)
T 3g5u_A 1223 CIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQ 1270 (1284)
T ss_dssp EEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHH
T ss_pred EEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHH
Confidence 9999999999988999999999999999999999987 56777776543
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.4e-45 Score=369.37 Aligned_cols=254 Identities=25% Similarity=0.405 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCCCCCCcEEEeeeEEEEe--------------cCCceEEEEeccCC
Q psy3001 158 TSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYR--------------EGLELVGIVGRTGA 223 (602)
Q Consensus 158 ~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~--------------~~~e~~~lvG~sGs 223 (602)
+..++.++.+++|+.++++.+++....... ....+..+.++|+||+|+|+ +| +++||+|||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~G-e~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGA--GPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPG-QTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTC--BCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTT-CEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccc--cccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCC-CEEEEECCCCc
Confidence 345667778889999988654432211110 00111234566666666664 33 88999999999
Q ss_pred ChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeec
Q psy3001 224 GKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303 (602)
Q Consensus 224 GKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (602)
|||||+++|+|+++|++|+|.++|.++..++...+|+.|+||||+ |.+| ..++
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~-----------~~lf-------------~~Tv--- 144 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD-----------TVLF-------------NDTI--- 144 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSS-----------CCCC-------------SEEH---
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecC-----------CccC-------------cccH---
Confidence 999999999999999999999999999999999999999999998 3333 1121
Q ss_pred ccccccccccc-cchhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccc
Q psy3001 304 EDVKPLIITPF-CSNLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATA 378 (602)
Q Consensus 304 ~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts 378 (602)
.+++.... .....+...... ...+.+..+ +....+++.+.+|| |||||||+|||||+++|+|||||||||
T Consensus 145 ---~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LS--GGqrQRvaiARAL~~~p~iLlLDEPts 219 (306)
T 3nh6_A 145 ---ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLS--GGEKQRVAIARTILKAPGIILLDEATS 219 (306)
T ss_dssp ---HHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCC--HHHHHHHHHHHHHHHCCSEEEEECCSS
T ss_pred ---HHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCC--HHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 11111110 001111111100 001111111 23445667778888 599999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 379 AIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 379 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
+||+.++..+.+.|+++.+++|+|+||||++.+..||+|++|++|+|++.|+++++++. .+.|..++.
T Consensus 220 ~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~ 287 (306)
T 3nh6_A 220 ALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQ 287 (306)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHH
Confidence 99999999999999988778999999999999988999999999999999999999875 556665554
No 12
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=8.2e-45 Score=396.27 Aligned_cols=336 Identities=20% Similarity=0.193 Sum_probs=209.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceE---------EECCeecCCCChHHH--hhccceecc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTI---------IIDGVDIRTLGLHTL--RSRLTIIPQ 267 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I---------~i~g~~~~~~~~~~~--~~~i~~v~Q 267 (602)
..++|+| .+.+| |++||+|+||||||||+|+|+|+++|++|++ .++|.++........ +..+++++|
T Consensus 36 ~~l~~vs-~i~~G-e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q 113 (538)
T 1yqt_A 36 FVLYRLP-VVKEG-MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ 113 (538)
T ss_dssp CEEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred ccccCcC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence 3788999 88888 9999999999999999999999999999995 234433321100011 124566666
Q ss_pred cchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCc
Q psy3001 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGET 347 (602)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 347 (602)
..... +..+ ..++.+. +. ......+..+.++.++..........+
T Consensus 114 ~~~~~-------~~~~-------------------~~~v~e~--------~~-~~~~~~~~~~~l~~lgl~~~~~~~~~~ 158 (538)
T 1yqt_A 114 YVDLI-------PKAV-------------------KGKVIEL--------LK-KADETGKLEEVVKALELENVLEREIQH 158 (538)
T ss_dssp CGGGS-------GGGC-------------------CSBHHHH--------HH-HHCSSSCHHHHHHHTTCTTTTTSBGGG
T ss_pred hhhhc-------chhh-------------------hccHHHH--------Hh-hhhHHHHHHHHHHHcCCChhhhCChhh
Confidence 42110 0000 0001000 00 000001112233344444445555667
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
|| |||||||+|||||+.+|++|||||||++||+.+..++.+.|+++. .++|||+||||++++.. ||+|++|++|..
T Consensus 159 LS--gGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~ 236 (538)
T 1yqt_A 159 LS--GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPG 236 (538)
T ss_dssp CC--HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETT
T ss_pred CC--HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCccc
Confidence 77 699999999999999999999999999999999999999998864 47999999999999988 999999986422
Q ss_pred EeecChhHHhhcchhHHHHHHHhh---hh--hHH----H-HHHHh--hhh-hHHHHHHHHHHHhcccccccceeeEEecc
Q psy3001 426 VEFDSPSVLMKNKASIFYSMAKDA---GL--AWL----A-VRLET--VGN-LITFSAALLAVLSKETLNAGLVGLSVSYA 492 (602)
Q Consensus 426 ~~~g~~~~l~~~~~~~~~~~~~~~---~~--~~~----~-~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~G 492 (602)
.++....-..........+.... .. ... . ..... ... .+.+.... .......+..++|++++|
T Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~l~~~~~~i~~G 312 (538)
T 1yqt_A 237 -VYGIFSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLV---KDYGSFRLEVEPGEIKKG 312 (538)
T ss_dssp -TEEEECCCEEHHHHHHHHHHTEETTTTEECSSSCCCCCCSSGGGSSCCCEEEEECCEE---EEETTEEEEECCEEEETT
T ss_pred -ccccccchhhHHHHHHHHhhhccchhhhcccccccccccCCcccccCCCeEEEEeeEE---EEECCEEEEeCccccCCC
Confidence 11110000000000000000000 00 000 0 00000 000 00000000 000112334567778999
Q ss_pred eeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhcccCCC--CC-CcH
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRLNLDPV--GE-SSD 568 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~nl~~~--~~-~~~ 568 (602)
|++||+|+||||||||+++|+|+++|++|+|.++ .+++||||++.. +..||.+++... .. ...
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~ 379 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTVAYKPQYIKADYEGTVYELLSKIDASKLNSN 379 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHH
Confidence 9999999999999999999999999999999862 369999999965 566998876421 11 234
Q ss_pred HHHHHHHHHcCCCccccccccC
Q psy3001 569 EAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 569 ~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+.+.++++.+++.++.++.|..
T Consensus 380 ~~~~~~l~~~~l~~~~~~~~~~ 401 (538)
T 1yqt_A 380 FYKTELLKPLGIIDLYDREVNE 401 (538)
T ss_dssp HHHHHTTTTTTCGGGTTSBGGG
T ss_pred HHHHHHHHHcCChhhhcCChhh
Confidence 5688899999998766655543
No 13
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.2e-44 Score=398.81 Aligned_cols=335 Identities=18% Similarity=0.194 Sum_probs=208.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceE---------EECCeecCCCChHH--Hhhccceeccc
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTI---------IIDGVDIRTLGLHT--LRSRLTIIPQV 268 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I---------~i~g~~~~~~~~~~--~~~~i~~v~Q~ 268 (602)
.++++| .+.+| ++++|+|+||||||||+|+|+|+++|++|++ .++|.++....... .+..+++++|.
T Consensus 107 ~l~~vs-~i~~G-e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 107 VLYRLP-IVKDG-MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp EEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred eeCCCC-CCCCC-CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 566777 66666 9999999999999999999999999999995 23444332110011 12246666664
Q ss_pred chhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcC
Q psy3001 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETV 348 (602)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 348 (602)
..... ..+ ..++.+++.. . ....+..+.++.++..........+|
T Consensus 185 ~~~~~-------~~~-------------------~~tv~e~l~~--~-------~~~~~~~~~L~~lgL~~~~~~~~~~L 229 (607)
T 3bk7_A 185 VDLLP-------KAV-------------------KGKVRELLKK--V-------DEVGKFEEVVKELELENVLDRELHQL 229 (607)
T ss_dssp GGGGG-------GTC-------------------CSBHHHHHHH--T-------CCSSCHHHHHHHTTCTTGGGSBGGGC
T ss_pred hhhch-------hhc-------------------cccHHHHhhh--h-------HHHHHHHHHHHHcCCCchhCCChhhC
Confidence 21100 000 0011110000 0 00011122233455555556666778
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
| ||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|||+||||++.+.. ||+|++|+++. .
T Consensus 230 S--GGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~-~ 306 (607)
T 3bk7_A 230 S--GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEP-G 306 (607)
T ss_dssp C--HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCT-T
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCc-c
Confidence 8 699999999999999999999999999999999999999998874 47999999999999987 99999998642 1
Q ss_pred eecChhHHhhcchhHHHHHHHhh---hhhHHHH----H-HHhh----hh-hHHHHHHHHHHHhcccccccceeeEEecce
Q psy3001 427 EFDSPSVLMKNKASIFYSMAKDA---GLAWLAV----R-LETV----GN-LITFSAALLAVLSKETLNAGLVGLSVSYAM 493 (602)
Q Consensus 427 ~~g~~~~l~~~~~~~~~~~~~~~---~~~~~~~----~-~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge 493 (602)
.+|....-..........+.... ....... . ..+. .. .+.+.... ..-....+..++|++++||
T Consensus 307 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~l~~~~~~v~~Ge 383 (607)
T 3bk7_A 307 VYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLV---KDYGSFKLEVEPGEIRKGE 383 (607)
T ss_dssp TEEEECCCEEHHHHHHHHHHTEETTTTEECCSSCCCCCCSTTSCCCCCCEEEEECCEE---EECSSCEEEECCEEEETTC
T ss_pred ccceeccchhHHHHHHHHHhhcchhhhhhccccccccccCCCcccccCceEEEEeceE---EEecceEEEecccccCCCC
Confidence 22211000000000000000000 0000000 0 0000 00 00000000 0001123345677789999
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhcccCCC--CC-CcHH
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRLNLDPV--GE-SSDE 569 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~nl~~~--~~-~~~~ 569 (602)
++||+|+||||||||+++|+|+++|++|+|.++ .+++|+||++.. +..||.+++... .. ...+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 450 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNF 450 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHH
Confidence 999999999999999999999999999999862 369999999965 566998887432 11 1345
Q ss_pred HHHHHHHHcCCCccccccccC
Q psy3001 570 AIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 570 ~i~~al~~~~l~~~~~~~~~~ 590 (602)
.+.++++.+++.++.++.|..
T Consensus 451 ~~~~~l~~~~l~~~~~~~~~~ 471 (607)
T 3bk7_A 451 YKTELLKPLGIIDLYDRNVED 471 (607)
T ss_dssp HHHHTHHHHTCTTTTTSBGGG
T ss_pred HHHHHHHHcCCchHhcCChhh
Confidence 688999999998776665543
No 14
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=7.1e-44 Score=387.67 Aligned_cols=336 Identities=16% Similarity=0.201 Sum_probs=201.0
Q ss_pred EEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceE-----------EECCeecCCCChHHHhhccce--ecccchh
Q psy3001 205 KVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTI-----------IIDGVDIRTLGLHTLRSRLTI--IPQVLAT 271 (602)
Q Consensus 205 s~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I-----------~i~g~~~~~~~~~~~~~~i~~--v~Q~~~~ 271 (602)
.+...+.++++||+||||||||||+|+|+|+++|++|+| .++|.++..+......+..++ ..|....
T Consensus 18 ~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (538)
T 3ozx_A 18 GLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEY 97 (538)
T ss_dssp CCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTG
T ss_pred CCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhh
Confidence 333333349999999999999999999999999999998 344443321111111111111 1111000
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
. +.+ +...+.+. .. ......+..+.++.++...........||
T Consensus 98 ~-------~~~-------------------~~~~v~~~--------l~-~~~~~~~~~~~l~~l~l~~~~~~~~~~LS-- 140 (538)
T 3ozx_A 98 A-------SKF-------------------LKGTVNEI--------LT-KIDERGKKDEVKELLNMTNLWNKDANILS-- 140 (538)
T ss_dssp G-------GTT-------------------CCSBHHHH--------HH-HHCCSSCHHHHHHHTTCGGGTTSBGGGCC--
T ss_pred h-------hhh-------------------ccCcHHHH--------hh-cchhHHHHHHHHHHcCCchhhcCChhhCC--
Confidence 0 000 00000000 00 00000011122223333334455556677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||||+|||||+.+|++|||||||++||+.+..++.+.|+++.+++|||+||||++++.. ||+|++|++|... ++.
T Consensus 141 gGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~~-~g~ 219 (538)
T 3ozx_A 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSV-YGR 219 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETTT-EEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCccc-ccc
Confidence 69999999999999999999999999999999999999999998778999999999999988 9999999875422 111
Q ss_pred hhHHhhcchhHHHHHHHh---hhhhHHHHHHH-hhhhhHH--HHHHHHHHHhc-------ccccccceeeEEecceeEEE
Q psy3001 431 PSVLMKNKASIFYSMAKD---AGLAWLAVRLE-TVGNLIT--FSAALLAVLSK-------ETLNAGLVGLSVSYAMQVGI 497 (602)
Q Consensus 431 ~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~l~i~~Ge~v~i 497 (602)
...-..........+... ........... ....... ........+.. ....+...+|++++||++||
T Consensus 220 ~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i 299 (538)
T 3ozx_A 220 VSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGI 299 (538)
T ss_dssp ECCCEEHHHHHHHHHHTEETTTTEECSSSCCCCSCC----------CCEEEEECCEEEEETTEEEEECCEEEETTCEEEE
T ss_pred cchhhhHHHHHHHHHhhhchhhhhhccchhhhccccccccccccccccceEEEcceEEEECCEEEEeccceECCCCEEEE
Confidence 000000000000000000 00000000000 0000000 00000000000 11223345778999999999
Q ss_pred ECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhcccCC---C-CCCcHHHHH
Q psy3001 498 VGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRLNLDP---V-GESSDEAIW 572 (602)
Q Consensus 498 vG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~nl~~---~-~~~~~~~i~ 572 (602)
+|+||||||||+++|+|+++|++|+|.+++ ..++|+||++.. +..||++|+.. . .....+.+.
T Consensus 300 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~ 367 (538)
T 3ozx_A 300 LGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE 367 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence 999999999999999999999999999876 368999999864 56799998742 1 112345678
Q ss_pred HHHHHcCCCccccccccC
Q psy3001 573 KALELAHLNTFVSNLPAR 590 (602)
Q Consensus 573 ~al~~~~l~~~~~~~~~~ 590 (602)
++++.+++.++.++.|..
T Consensus 368 ~~l~~~~l~~~~~~~~~~ 385 (538)
T 3ozx_A 368 EVTKRLNLHRLLESNVND 385 (538)
T ss_dssp HTTTTTTGGGCTTSBGGG
T ss_pred HHHHHcCCHHHhcCChhh
Confidence 899999998876666553
No 15
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.8e-43 Score=398.57 Aligned_cols=277 Identities=18% Similarity=0.263 Sum_probs=179.8
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+||++.+| ++++|+|+||||||||+|+|+| |+| +|.+... ...++|++|++...+
T Consensus 447 ~~~iL~~vsl~I~~G-e~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~~~v~q~~~~~~--- 508 (986)
T 2iw3_A 447 AKILLNKTQLRLKRA-RRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRTVYVEHDIDGTH--- 508 (986)
T ss_dssp TEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCEEETTCCCCCCC---
T ss_pred CEEeEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeEEEEcccccccc---
Confidence 346788899998888 9999999999999999999996 443 4433211 113567777521100
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~ 355 (602)
+ ..++.+.+..... .. ..+..+.++.++.. .........|| ||||
T Consensus 509 ---~----------------------~ltv~e~l~~~~~-~~------~~~v~~~L~~lgL~~~~~~~~~~~LS--GGqk 554 (986)
T 2iw3_A 509 ---S----------------------DTSVLDFVFESGV-GT------KEAIKDKLIEFGFTDEMIAMPISALS--GGWK 554 (986)
T ss_dssp ---T----------------------TSBHHHHHHTTCS-SC------HHHHHHHHHHTTCCHHHHHSBGGGCC--HHHH
T ss_pred ---c----------------------CCcHHHHHHHhhc-CH------HHHHHHHHHHcCCChhhhcCCcccCC--HHHH
Confidence 0 0001111000000 00 11122223333332 22344455677 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEE-eecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV-EFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~-~~g~~~~ 433 (602)
||++|||||+.+|++|||||||++||+.+..++.+.|++ .++|+|+|||+++++.. ||+|++|++|+++ ..|++++
T Consensus 555 QRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e 632 (986)
T 2iw3_A 555 MKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTE 632 (986)
T ss_dssp HHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHH
Confidence 999999999999999999999999999999999999988 58999999999999988 9999999999997 5788888
Q ss_pred Hhhcchh--HHHHHHH-hhhhhHHHHH-HHh---hhh-hHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCCh
Q psy3001 434 LMKNKAS--IFYSMAK-DAGLAWLAVR-LET---VGN-LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGK 505 (602)
Q Consensus 434 l~~~~~~--~~~~~~~-~~~~~~~~~~-~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGK 505 (602)
+...... .++.... .....+.... ... ... .+.+.+..+.|.......+.++||++++||++||+|+|||||
T Consensus 633 ~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGK 712 (986)
T 2iw3_A 633 FVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGK 712 (986)
T ss_dssp HHHHCGGGGGSSSTTTCCCCCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHH
T ss_pred HHhhhHHHHHHHhhhhhhhhccccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCH
Confidence 7642111 0110000 0000000000 000 000 001111111111111223567999999999999999999999
Q ss_pred HHHHHHHHhccCCCCceEEECC
Q psy3001 506 SSLTLALFRIIEPADGTIIIDG 527 (602)
Q Consensus 506 STLl~~L~g~~~~~~G~I~i~g 527 (602)
|||+|+|+|+++|++|+|.++|
T Consensus 713 STLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 713 STLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp HHHHHHHTTSSCCSEEEEEECT
T ss_pred HHHHHHHhCCCCCCceEEEEcC
Confidence 9999999999999999999986
No 16
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=5.1e-41 Score=344.29 Aligned_cols=211 Identities=24% Similarity=0.373 Sum_probs=163.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~~~i~~v~Q~~~~~~~~ 275 (602)
..++||||++.+| +++||+||||||||||+|+|+|+++|++|+|.++|+++..++... +|+.|+||||++..
T Consensus 42 ~aL~~vsl~i~~G-ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l---- 116 (366)
T 3tui_C 42 QALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL---- 116 (366)
T ss_dssp EEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC----
T ss_pred EEEEeeEEEEcCC-CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc----
Confidence 4677777777777 999999999999999999999999999999999999999988765 47889999997421
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+ ...++.+++.... ..... ......+..+.++.+++.........+|| |||
T Consensus 117 -------~------------------~~~TV~env~~~~~~~~~~-~~~~~~~v~~lL~~vgL~~~~~~~~~~LS--GGq 168 (366)
T 3tui_C 117 -------L------------------SSRTVFGNVALPLELDNTP-KDEVKRRVTELLSLVGLGDKHDSYPSNLS--GGQ 168 (366)
T ss_dssp -------C------------------TTSCHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHTCGGGTTCCTTTSC--HHH
T ss_pred -------C------------------CCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCchHhcCChhhCC--HHH
Confidence 1 0001111111000 00000 01111223333445555556677778888 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||+|||||+.+|++||||||||+||+.+...+.+.|+++.+ |+|||+|||+++.+.. ||||++|++|++++.|++
T Consensus 169 kQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~ 248 (366)
T 3tui_C 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTV 248 (366)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999998743 7999999999999988 999999999999999999
Q ss_pred hHHhhcchhHH
Q psy3001 432 SVLMKNKASIF 442 (602)
Q Consensus 432 ~~l~~~~~~~~ 442 (602)
++++..+...+
T Consensus 249 ~ev~~~p~~~~ 259 (366)
T 3tui_C 249 SEVFSHPKTPL 259 (366)
T ss_dssp HHHHSSCCSHH
T ss_pred HHHHhCCCcHH
Confidence 99987654433
No 17
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-42 Score=374.99 Aligned_cols=241 Identities=16% Similarity=0.179 Sum_probs=159.7
Q ss_pred HHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccc
Q psy3001 331 RLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLN 409 (602)
Q Consensus 331 ~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~ 409 (602)
.++.++...........|| ||||||++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|||+|||+++
T Consensus 205 ~l~~~gl~~~~~~~~~~LS--gGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~ 282 (608)
T 3j16_B 205 YIKILQLENVLKRDIEKLS--GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS 282 (608)
T ss_dssp HHHHHTCTGGGGSCTTTCC--HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH
T ss_pred HHHHcCCcchhCCChHHCC--HHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3344555555666677788 6999999999999999999999999999999999999999998754 799999999999
Q ss_pred cccc-CCeEEEEeCceEEeec--ChhHHhhcchhHHHHHHHhh----hhhHHHH----HHHhhhhhHHH--HHHHHHHHh
Q psy3001 410 TIID-SDRVLVLDKGLVVEFD--SPSVLMKNKASIFYSMAKDA----GLAWLAV----RLETVGNLITF--SAALLAVLS 476 (602)
Q Consensus 410 ~i~~-~d~i~~l~~G~i~~~g--~~~~l~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~--~~~~~~~~~ 476 (602)
++.. ||+|++|++|..+... .+.... .. ........ ....... ........... ......+ .
T Consensus 283 ~~~~~~drv~vl~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~ 357 (608)
T 3j16_B 283 VLDYLSDFVCIIYGVPSVYGVVTLPASVR---EG-INIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSY-P 357 (608)
T ss_dssp HHHHHCSEEEEEESCTTTEEEECCCEEHH---HH-HHHHHHTEETTTTEECSSSCCCCCCSSSSCCCCCCSSSSCCEE-C
T ss_pred HHHHhCCEEEEEeCCccccceecCchhHH---HH-HHHhhccccchhhhccccccccccccccccceeeeccceeEEe-c
Confidence 9988 9999999876532110 000000 00 00000000 0000000 00000000000 0000000 0
Q ss_pred cccccccceeeEEecc-----eeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc-
Q psy3001 477 KETLNAGLVGLSVSYA-----MQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV- 550 (602)
Q Consensus 477 ~~~~~~~~~~l~i~~G-----e~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~- 550 (602)
......++++|++.+| |++||+|+||||||||+++|+|+++|++|+. +. +.+++|+||++.
T Consensus 358 ~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~ 424 (608)
T 3j16_B 358 SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAP 424 (608)
T ss_dssp CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCC
T ss_pred CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccc
Confidence 0011234688999888 7899999999999999999999999999972 11 346999999985
Q ss_pred ccccchhcccC--C-CCCCcHHHHHHHHHHcCCCccccccccCC
Q psy3001 551 LFSGTLRLNLD--P-VGESSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 551 lf~~Tv~~nl~--~-~~~~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
.|..||++|+. . ......+...++++.+++.++.++.|..|
T Consensus 425 ~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~L 468 (608)
T 3j16_B 425 KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHL 468 (608)
T ss_dssp CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSC
T ss_pred cCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhC
Confidence 46779998863 1 12234566888999999988776665543
No 18
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=6.2e-41 Score=334.11 Aligned_cols=206 Identities=22% Similarity=0.319 Sum_probs=161.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC--CCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++. ..+...+++.++|+||++..++
T Consensus 21 ~~~L~~isl~i~~G-e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~-- 97 (275)
T 3gfo_A 21 THALKGINMNIKRG-EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL-- 97 (275)
T ss_dssp CEEEEEEEEEEETT-SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC--
T ss_pred CeEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccc--
Confidence 34899999999998 999999999999999999999999999999999999984 2334567899999999864221
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+ ..++.+++... ......+.. .+..+.++.++...........|| |
T Consensus 98 -------~-------------------~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~l~~~~L~~~~~~~~~~LS--g 146 (275)
T 3gfo_A 98 -------F-------------------SASVYQDVSFGAVNMKLPEDEIR---KRVDNALKRTGIEHLKDKPTHCLS--F 146 (275)
T ss_dssp -------C-------------------SSBHHHHHHHHHHTSCCCHHHHH---HHHHHHHHHTTCGGGTTSBGGGSC--H
T ss_pred -------c-------------------cCcHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCCchhhcCCcccCC--H
Confidence 0 00111110000 000011111 222333445555555666677788 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.++..+.+.++++. + |+|||+|||+++.+.. ||||++|++|++++.|
T Consensus 147 GqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g 226 (275)
T 3gfo_A 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQG 226 (275)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998875 3 8999999999999987 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
++++++..
T Consensus 227 ~~~~~~~~ 234 (275)
T 3gfo_A 227 NPKEVFAE 234 (275)
T ss_dssp CHHHHTHH
T ss_pred CHHHHhcC
Confidence 99998764
No 19
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=7.4e-42 Score=384.96 Aligned_cols=311 Identities=20% Similarity=0.251 Sum_probs=180.5
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHH---------------------HHHhcccCCC-------CceEEECCeecC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLT---------------------LALFRIIEPA-------DGTIIIDGVDIR 251 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~---------------------~ll~g~~~~~-------~G~I~i~g~~~~ 251 (602)
.++||||++++| +++||+||||||||||+ +++.|+..|+ .|.|.+++.+..
T Consensus 33 ~L~~vsl~i~~G-e~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 33 NLKNIDVEIPRG-KLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TCCSEEEEEETT-SEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred ceeccEEEECCC-CEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 489999999998 99999999999999998 8999999998 455556665443
Q ss_pred CCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc----cc---ch-hHHHHH
Q psy3001 252 TLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP----FC---SN-LQRFYV 323 (602)
Q Consensus 252 ~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~-~~~~~~ 323 (602)
. ..++.+++++|.+...-.........+ ...........++.+++... .. .. ......
T Consensus 112 ~----~~~~~ig~v~q~~~~~~~~~~~~~~~~----------~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 177 (670)
T 3ux8_A 112 R----NPRSTVGTVTEIYDYLRLLFARIGRLV----------GGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILR 177 (670)
T ss_dssp -------CCBHHHHTTCC-----------------------------------CC-------------------------
T ss_pred c----cchhceeeeechhhhHHHHHhhhcccc----------cccccccccCCcHHHHHHHhhccccchhhhHHHHHHHH
Confidence 2 224567777775332110000000000 00000000000111110000 00 00 000000
Q ss_pred HHHHHHHHHhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCCC--eEEEecccccCChhHHHHHHHHHHHhc-ccc
Q psy3001 324 ATSRQLKRLESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKTK--ILILDEATAAIDLETDDLIQSTIRSEF-AHC 399 (602)
Q Consensus 324 ~~~~~~~~l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~-~~~ 399 (602)
...+..+.++.++.... ......+|| |||||||+|||||+.+|+ +|||||||++||+.+..++.+.|+++. ++.
T Consensus 178 ~~~~~~~~l~~~gL~~~~~~~~~~~LS--GGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~ 255 (670)
T 3ux8_A 178 EIRDRLGFLQNVGLDYLTLSRSAGTLS--GGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGN 255 (670)
T ss_dssp -CHHHHHHHHHTTCTTCCTTCBGGGSC--HHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCchhhhcCCcccCC--HHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCC
Confidence 11111222334444332 345566777 699999999999999998 999999999999999999999998874 479
Q ss_pred EEEEeeecccccccCCeEEEE------eCceEEeecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHH
Q psy3001 400 TVLTIAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLA 473 (602)
Q Consensus 400 tvi~itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (602)
|||+|||+++.+..||+|++| ++|++++.|+++++.......+........ +.. ..............
T Consensus 256 tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~ 329 (670)
T 3ux8_A 256 TLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKK--FIP----IPAERRRPDGRWLE 329 (670)
T ss_dssp EEEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHHHTTSS--CCC----CCSSCCCCCSCEEE
T ss_pred EEEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHHhcccc--ccc----ccccccccccccee
Confidence 999999999987679999999 899999999999987654332222111100 000 00000000000000
Q ss_pred HHhcccccccceeeEEecceeEEEECCCCCChHHHHHHHH----------------------hccCCCCceEEECCeecC
Q psy3001 474 VLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALF----------------------RIIEPADGTIIIDGVDIR 531 (602)
Q Consensus 474 ~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~----------------------g~~~~~~G~I~i~g~~i~ 531 (602)
+.......++++||+|++||++||+||||||||||+++|+ |+.. .+|.|.+++.++.
T Consensus 330 ~~~~~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~ 408 (670)
T 3ux8_A 330 VVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIG 408 (670)
T ss_dssp EEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSC
T ss_pred ecCccccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCC
Confidence 0011122356899999999999999999999999998754 3333 3468889988876
Q ss_pred CCC
Q psy3001 532 TLG 534 (602)
Q Consensus 532 ~~~ 534 (602)
..+
T Consensus 409 ~~~ 411 (670)
T 3ux8_A 409 RTP 411 (670)
T ss_dssp SST
T ss_pred CCC
Confidence 544
No 20
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.1e-39 Score=321.18 Aligned_cols=214 Identities=31% Similarity=0.485 Sum_probs=161.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+||++.
T Consensus 22 ~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~------- 93 (247)
T 2ff7_A 22 PVILDNINLSIKQG-EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNV------- 93 (247)
T ss_dssp CEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC-------
T ss_pred cceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCc-------
Confidence 45799999999988 9999999999999999999999999999999999999998888888999999999742
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHH-HH-HHHhhc--ccCCcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSR-QL-KRLESV--SRSPIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~~l~~~--~~~~~~~~~~~~lsgs~ 352 (602)
++ .. ++.+++.... ............. .+ +.+... +........+.++| |
T Consensus 94 ----l~-------------~~------tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LS--g 148 (247)
T 2ff7_A 94 ----LL-------------NR------SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS--G 148 (247)
T ss_dssp ----CT-------------TS------BHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCC--H
T ss_pred ----cc-------------cc------cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCC--H
Confidence 11 00 1111111000 0000011000000 00 111111 12223444556777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
|||||++|||||+++|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+..||++++|++|++++.|+++
T Consensus 149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~ 228 (247)
T 2ff7_A 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHK 228 (247)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999998876689999999999998779999999999999999999
Q ss_pred HHhhcchhHHHH
Q psy3001 433 VLMKNKASIFYS 444 (602)
Q Consensus 433 ~l~~~~~~~~~~ 444 (602)
+++..+...|..
T Consensus 229 ~l~~~~~~~~~~ 240 (247)
T 2ff7_A 229 ELLSEPESLYSY 240 (247)
T ss_dssp HHHTSTTCHHHH
T ss_pred HHHhCCchHHHH
Confidence 987653444443
No 21
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=6.2e-40 Score=320.79 Aligned_cols=204 Identities=23% Similarity=0.313 Sum_probs=154.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH----hhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~----~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|.++..++...+ ++.++|++|++..
T Consensus 18 ~~~L~~isl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l-- 94 (235)
T 3tif_A 18 IYALKNVNLNIKEG-EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL-- 94 (235)
T ss_dssp EEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC--
T ss_pred eeeEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc--
Confidence 35799999999998 9999999999999999999999999999999999999999887654 4579999998421
Q ss_pred hhccCCceeEeeecccceeeeccccceeeccccccccccc----ccchhHHHHHHHHHHHHHHhhcccCCc-ccccCCcC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP----FCSNLQRFYVATSRQLKRLESVSRSPI-YSHFGETV 348 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l 348 (602)
+. . .++.+++... ...... ......+..+.++.++.... .......|
T Consensus 95 ---------~~------------~------~tv~enl~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 146 (235)
T 3tif_A 95 ---------IP------------L------LTALENVELPLIFKYRGAMS-GEERRKRALECLKMAELEERFANHKPNQL 146 (235)
T ss_dssp ---------CT------------T------SCHHHHHHHHHHTCSSSCCC-HHHHHHHHHHHHHHTTCCGGGTTCCGGGS
T ss_pred ---------CC------------C------CcHHHHHHHHHHhhhccCCC-HHHHHHHHHHHHHHCCCChhhhhCChhhC
Confidence 10 0 0111110000 000000 00111222333334444432 25567778
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeecccccccCCeEEEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIIDSDRVLVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~~d~i~~l~~G~i~ 426 (602)
| ||||||++|||||+.+|++|||||||++||+.++..+.+.++++. + ++|||+|||+++.+..||+|++|++|+++
T Consensus 147 S--gGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 147 S--GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224 (235)
T ss_dssp C--HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEE
T ss_pred C--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 8 699999999999999999999999999999999999999998874 3 79999999999966459999999999999
Q ss_pred eecChhHH
Q psy3001 427 EFDSPSVL 434 (602)
Q Consensus 427 ~~g~~~~l 434 (602)
+.++.+++
T Consensus 225 ~~~~~~~~ 232 (235)
T 3tif_A 225 REEKLRGF 232 (235)
T ss_dssp EEEECC--
T ss_pred EEcChhhh
Confidence 98876654
No 22
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=8.9e-40 Score=325.01 Aligned_cols=205 Identities=22% Similarity=0.290 Sum_probs=161.8
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+||++.+| +++||+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.+++++|++...+
T Consensus 23 ~~~vL~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~--- 98 (266)
T 4g1u_C 23 QQALINDVSLHIASG-EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAF--- 98 (266)
T ss_dssp TEEEEEEEEEEEETT-CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCS---
T ss_pred CeeEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCC---
Confidence 356799999999998 9999999999999999999999999999999999999999999999999999999743211
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
..++.+++..... ........ +..+.++.++...........|| ||||
T Consensus 99 --------------------------~~tv~e~l~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS--gGq~ 147 (266)
T 4g1u_C 99 --------------------------PFSVSEVIQMGRAPYGGSQDRQ---ALQQVMAQTDCLALAQRDYRVLS--GGEQ 147 (266)
T ss_dssp --------------------------CCBHHHHHHGGGTTSCSTTHHH---HHHHHHHHTTCSTTTTSBGGGCC--HHHH
T ss_pred --------------------------CCCHHHHHHhhhhhcCcHHHHH---HHHHHHHHcCChhHhcCCcccCC--HHHH
Confidence 0011111100000 00001111 22223334455555556666788 6999
Q ss_pred HHHHHHHHHhh------CCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 356 QLICLARALLR------KTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 356 Qrl~lAral~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
||++|||||+. +|++|||||||++||+.++..+.+.++++. + ++|+|+|||+++.+.. ||||++|++|+++
T Consensus 148 QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~ 227 (266)
T 4g1u_C 148 QRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV 227 (266)
T ss_dssp HHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999 999999999999999999999999998874 3 4799999999999987 9999999999999
Q ss_pred eecChhHHhh
Q psy3001 427 EFDSPSVLMK 436 (602)
Q Consensus 427 ~~g~~~~l~~ 436 (602)
+.|++++++.
T Consensus 228 ~~g~~~~~~~ 237 (266)
T 4g1u_C 228 ACGTPEEVLN 237 (266)
T ss_dssp EEECHHHHCC
T ss_pred EEcCHHHHhC
Confidence 9999988764
No 23
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1e-39 Score=336.82 Aligned_cols=211 Identities=21% Similarity=0.269 Sum_probs=165.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| |+++|+||||||||||+|+|+|+++|++|+|.++|.++...++. ++.|+||+|++.
T Consensus 16 ~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~------- 85 (381)
T 3rlf_A 16 VVVSKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYA------- 85 (381)
T ss_dssp EEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCC-------
T ss_pred EEEEeeeEEEECCC-CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCc-------
Confidence 45799999999998 99999999999999999999999999999999999999887765 467999999742
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+| ...++.+++..... .... ......+..+.++.+++.........+|| |||||
T Consensus 86 ----l~------------------p~ltV~eni~~~~~~~~~~-~~~~~~~v~~~l~~~~L~~~~~r~p~~LS--GGqrQ 140 (381)
T 3rlf_A 86 ----LY------------------PHLSVAENMSFGLKLAGAK-KEVINQRVNQVAEVLQLAHLLDRKPKALS--GGQRQ 140 (381)
T ss_dssp ----CC------------------TTSCHHHHHTHHHHHTTCC-HHHHHHHHHHHHHHTTCGGGTTCCGGGSC--HHHHH
T ss_pred ----CC------------------CCCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCchhhcCChhHCC--HHHHH
Confidence 11 00111111111000 0000 01111223334445566666677788888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++||||||||+||+..+..+.+.|+++. + +.|+|+|||+++++.. ||||++|++|++++.|++++
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999998874 3 7999999999999988 99999999999999999999
Q ss_pred HhhcchhHHH
Q psy3001 434 LMKNKASIFY 443 (602)
Q Consensus 434 l~~~~~~~~~ 443 (602)
++..+...|.
T Consensus 221 l~~~p~~~~v 230 (381)
T 3rlf_A 221 LYHYPADRFV 230 (381)
T ss_dssp HHHCCSBHHH
T ss_pred HHhCCccHHH
Confidence 9876554443
No 24
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.2e-39 Score=334.07 Aligned_cols=208 Identities=23% Similarity=0.312 Sum_probs=160.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC--ChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| |+++|+||||||||||+|+|+|+++|++|+|.++|+++... .....++.++||+|++.
T Consensus 17 ~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~----- 90 (359)
T 3fvq_A 17 TPVLNDISLSLDPG-EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGV----- 90 (359)
T ss_dssp EEEEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCC-----
T ss_pred EEEEEeeEEEEcCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCc-----
Confidence 45799999999998 99999999999999999999999999999999999998321 22345678999999732
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccccc---chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC---SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+|. ..++.+++..... ....... .+..+.++.+++..........|| |
T Consensus 91 ------l~p------------------~ltV~eni~~~l~~~~~~~~~~~---~~v~~~l~~~gL~~~~~r~~~~LS--G 141 (359)
T 3fvq_A 91 ------LFP------------------HLTVYRNIAYGLGNGKGRTAQER---QRIEAMLELTGISELAGRYPHELS--G 141 (359)
T ss_dssp ------CCT------------------TSCHHHHHHTTSTTSSCCSHHHH---HHHHHHHHHHTCGGGTTSCGGGSC--H
T ss_pred ------CCC------------------CCCHHHHHHHHHHHcCCChHHHH---HHHHHHHHHcCCchHhcCChhhCC--H
Confidence 110 0111111111000 0011111 222333445555566677778888 5
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
||||||+|||||+.+|++||||||||+||+..+..+.+.+++.. .++|+|+|||+++++.. ||||++|++|+++..|
T Consensus 142 Gq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g 221 (359)
T 3fvq_A 142 GQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTA 221 (359)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEe
Confidence 99999999999999999999999999999999999988776642 47999999999999988 9999999999999999
Q ss_pred ChhHHhhcchh
Q psy3001 430 SPSVLMKNKAS 440 (602)
Q Consensus 430 ~~~~l~~~~~~ 440 (602)
++++++..+..
T Consensus 222 ~~~el~~~p~~ 232 (359)
T 3fvq_A 222 SPHELYRQPAD 232 (359)
T ss_dssp CHHHHHHSCSC
T ss_pred CHHHHHhCccc
Confidence 99999876543
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=3e-39 Score=322.30 Aligned_cols=213 Identities=24% Similarity=0.359 Sum_probs=160.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.|+|+||++.
T Consensus 33 ~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~-------- 103 (271)
T 2ixe_A 33 QVLQGLTFTLYPG-KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL-------- 103 (271)
T ss_dssp CCEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCC--------
T ss_pred eeeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCc--------
Confidence 4688888888887 9999999999999999999999999999999999999988888888899999999742
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHH--HHHHHHHhhc--ccCCcccccCCcCCCCh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVAT--SRQLKRLESV--SRSPIYSHFGETVTGNV 352 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~l~~~--~~~~~~~~~~~~lsgs~ 352 (602)
+| .. ++.+++... ............ ....+.++.+ +........+.+|| |
T Consensus 104 ---l~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LS--g 159 (271)
T 2ixe_A 104 ---LF-------------GR------SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLS--G 159 (271)
T ss_dssp ---CC-------------SS------BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSC--H
T ss_pred ---cc-------------cc------cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCC--H
Confidence 22 10 111111100 000001110000 0111122222 33334555667788 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
|||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|||+|||+++.+..||+|++|++|++++.|+
T Consensus 160 Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~ 239 (271)
T 2ixe_A 160 GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239 (271)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999998753 799999999999887799999999999999999
Q ss_pred hhHHhhcchhHHHHH
Q psy3001 431 PSVLMKNKASIFYSM 445 (602)
Q Consensus 431 ~~~l~~~~~~~~~~~ 445 (602)
+++++.. ...|...
T Consensus 240 ~~~l~~~-~~~~~~~ 253 (271)
T 2ixe_A 240 HLQLMER-GGCYRSM 253 (271)
T ss_dssp HHHHHHH-TSHHHHH
T ss_pred HHHHHhC-cHHHHHH
Confidence 9988764 3444433
No 26
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=3.9e-39 Score=319.34 Aligned_cols=207 Identities=27% Similarity=0.398 Sum_probs=157.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC--CCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++. ......+++.++|++|++..
T Consensus 37 ~~vL~~vsl~i~~G-ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l---- 111 (263)
T 2olj_A 37 LEVLKGINVHIREG-EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL---- 111 (263)
T ss_dssp EEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCC----
T ss_pred EEEEEeeEEEEcCC-CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcC----
Confidence 34788888888888 999999999999999999999999999999999999985 33455678899999997321
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+. ..++.+++... ....... .....+..+.++.++..........+|| ||
T Consensus 112 -------~~------------------~~tv~e~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~LS--gG 163 (263)
T 2olj_A 112 -------FP------------------HMTVLNNITLAPMKVRKWPR-EKAEAKAMELLDKVGLKDKAHAYPDSLS--GG 163 (263)
T ss_dssp -------CT------------------TSCHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHTTCGGGTTSCGGGSC--HH
T ss_pred -------CC------------------CCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHCCCchHhcCChhhCC--HH
Confidence 10 00111111000 0000000 0011122233344555445556667788 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.|++
T Consensus 164 qkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
T 2olj_A 164 QAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKP 243 (263)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999998874 47999999999999987 999999999999999999
Q ss_pred hHHhhc
Q psy3001 432 SVLMKN 437 (602)
Q Consensus 432 ~~l~~~ 437 (602)
++++..
T Consensus 244 ~~~~~~ 249 (263)
T 2olj_A 244 EDLFDR 249 (263)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 888764
No 27
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=8.1e-39 Score=317.35 Aligned_cols=204 Identities=20% Similarity=0.282 Sum_probs=155.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...+.. .+++.++|++|++....
T Consensus 20 ~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~--- 95 (257)
T 1g6h_A 20 FKALDGVSISVNKG-DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK--- 95 (257)
T ss_dssp EEEEEEECCEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG---
T ss_pred EeeEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCC---
Confidence 35788899998888 99999999999999999999999999999999999999876643 45778999999853210
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc-c--chh----------HHHHHHHHHHHHHHhhcccCCcccc
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-C--SNL----------QRFYVATSRQLKRLESVSRSPIYSH 343 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~ 343 (602)
.. ++.+++.... . ... ........+..+.++.++.......
T Consensus 96 --------------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 149 (257)
T 1g6h_A 96 --------------------EM------TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR 149 (257)
T ss_dssp --------------------GS------BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTS
T ss_pred --------------------CC------cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCC
Confidence 00 0111100000 0 000 0000011122233344555555566
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEe
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
...+|| ||||||++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|||++||+++.+.. ||++++|+
T Consensus 150 ~~~~LS--gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 227 (257)
T 1g6h_A 150 KAGELS--GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF 227 (257)
T ss_dssp BGGGSC--HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred CchhCC--HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 677788 6999999999999999999999999999999999999999988743 7999999999999987 99999999
Q ss_pred CceEEeecChhH
Q psy3001 422 KGLVVEFDSPSV 433 (602)
Q Consensus 422 ~G~i~~~g~~~~ 433 (602)
+|++++.|++++
T Consensus 228 ~G~i~~~g~~~~ 239 (257)
T 1g6h_A 228 NGQIIAEGRGEE 239 (257)
T ss_dssp TTEEEEEEESHH
T ss_pred CCEEEEEeCHHH
Confidence 999999998887
No 28
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-38 Score=328.33 Aligned_cols=207 Identities=20% Similarity=0.344 Sum_probs=161.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...++. ++.++||+|++.
T Consensus 16 ~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~------- 85 (359)
T 2yyz_A 16 VKAVDGVSFEVKDG-EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVFQNYA------- 85 (359)
T ss_dssp EEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECSSCC-------
T ss_pred EEEEeeeEEEEcCC-CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEecCcc-------
Confidence 45799999999998 99999999999999999999999999999999999999877654 578999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. ..++.+++.... ...... .....+..+.++.+++.........+|| |||||
T Consensus 86 ----l~~------------------~ltv~eni~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~r~~~~LS--gGq~Q 140 (359)
T 2yyz_A 86 ----LYP------------------HMTVFENIAFPLRARRISK-DEVEKRVVEIARKLLIDNLLDRKPTQLS--GGQQQ 140 (359)
T ss_dssp ----CCT------------------TSCHHHHHHGGGSSSCSHH-HHTTHHHHHHHHHTTCGGGTTSCGGGSC--HHHHH
T ss_pred ----cCC------------------CCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCchHhcCChhhCC--HHHHH
Confidence 110 001111111100 000000 0111223334445555555666777888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++|||||+.+|++|+||||||+||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||||++|++|+++..|++++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988643 7999999999999977 99999999999999999999
Q ss_pred Hhhcch
Q psy3001 434 LMKNKA 439 (602)
Q Consensus 434 l~~~~~ 439 (602)
++..+.
T Consensus 221 l~~~p~ 226 (359)
T 2yyz_A 221 VYDSPK 226 (359)
T ss_dssp HHHSCS
T ss_pred HHhCcc
Confidence 887643
No 29
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.1e-38 Score=309.82 Aligned_cols=200 Identities=22% Similarity=0.267 Sum_probs=153.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hh-hccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LR-SRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~-~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...+... ++ +.++|++|++..
T Consensus 17 ~~~l~~vsl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l-- 93 (224)
T 2pcj_A 17 YEILKGISLSVKKG-EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL-- 93 (224)
T ss_dssp EEEEEEEEEEEETT-CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC--
T ss_pred EeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc--
Confidence 45799999999998 999999999999999999999999999999999999998776543 33 789999997421
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+ ...++.+++.... ...... .....+..+.++.++..+.......+|| |
T Consensus 94 ---------~------------------~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--g 143 (224)
T 2pcj_A 94 ---------I------------------PELTALENVIVPMLKMGKPK-KEAKERGEYLLSELGLGDKLSRKPYELS--G 143 (224)
T ss_dssp ---------C------------------TTSCHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTCTTCTTCCGGGSC--H
T ss_pred ---------C------------------CCCCHHHHHHhHHHHcCCCH-HHHHHHHHHHHHHcCCchhhhCChhhCC--H
Confidence 1 0001111110000 000000 0111222333445555555666677788 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
|||||++|||||+.+|++|||||||++||+.++..+.+.++++. +++|||++||+++.+..||++++|++|++++.|+
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999999999998874 4799999999999884499999999999998775
No 30
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.9e-39 Score=315.42 Aligned_cols=205 Identities=19% Similarity=0.272 Sum_probs=156.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+++.++|+||++..
T Consensus 28 ~~vl~~vsl~i~~G-ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v~q~~~l------ 99 (256)
T 1vpl_A 28 KEILKGISFEIEEG-EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGA------ 99 (256)
T ss_dssp EEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCC------
T ss_pred EEEEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEEcCCCCC------
Confidence 45788888888888 9999999999999999999999999999999999999876 456678899999997421
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. . .++.+++.... ...... .....+..+.++.++..........++| |||||
T Consensus 100 -----~~------------~------ltv~enl~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~LS--gGq~q 153 (256)
T 1vpl_A 100 -----YR------------N------MQGIEYLRFVAGFYASSS-SEIEEMVERATEIAGLGEKIKDRVSTYS--KGMVR 153 (256)
T ss_dssp -----CT------------T------SBHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCGGGGGSBGGGCC--HHHHH
T ss_pred -----CC------------C------CcHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHCCCchHhcCChhhCC--HHHHH
Confidence 10 0 01111110000 000000 0001122233334444444555666788 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||++++|++|+++..|+++++
T Consensus 154 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 233 (256)
T 1vpl_A 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233 (256)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999998875 47999999999999988 999999999999999998887
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 234 ~~ 235 (256)
T 1vpl_A 234 KE 235 (256)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 31
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.1e-39 Score=313.71 Aligned_cols=204 Identities=19% Similarity=0.303 Sum_probs=155.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+ ++.++|+||++.
T Consensus 19 ~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~------ 91 (240)
T 1ji0_A 19 IHAIKGIDLKVPRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR------ 91 (240)
T ss_dssp EEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCC------
T ss_pred eeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCc------
Confidence 45799999999988 9999999999999999999999999999999999999988776655 456999999742
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhc-ccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESV-SRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~lsgs~G 353 (602)
++. .. ++.+++.... ............+.++ .+ +..........++| ||
T Consensus 92 -----l~~------------~l------tv~enl~~~~~~~~~~~~~~~~~~~~l~---~~~~l~~~~~~~~~~LS--gG 143 (240)
T 1ji0_A 92 -----IFP------------EL------TVYENLMMGAYNRKDKEGIKRDLEWIFS---LFPRLKERLKQLGGTLS--GG 143 (240)
T ss_dssp -----CCT------------TS------BHHHHHHGGGTTCCCSSHHHHHHHHHHH---HCHHHHTTTTSBSSSSC--HH
T ss_pred -----cCC------------CC------cHHHHHHHhhhcCCCHHHHHHHHHHHHH---HcccHhhHhcCChhhCC--HH
Confidence 110 00 1111100000 0000011111222222 22 13333455667788 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 144 q~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 223 (240)
T 1ji0_A 144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKA 223 (240)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999998875 57999999999998877 999999999999999988
Q ss_pred hHHhh
Q psy3001 432 SVLMK 436 (602)
Q Consensus 432 ~~l~~ 436 (602)
+++..
T Consensus 224 ~~~~~ 228 (240)
T 1ji0_A 224 SELLD 228 (240)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88764
No 32
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=9.6e-39 Score=317.32 Aligned_cols=207 Identities=25% Similarity=0.375 Sum_probs=158.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC----------CCh---HHHhhccce
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT----------LGL---HTLRSRLTI 264 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~----------~~~---~~~~~~i~~ 264 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++.. ++. ..+++.++|
T Consensus 19 ~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (262)
T 1b0u_A 19 HEVLKGVSLQARAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTM 97 (262)
T ss_dssp EEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEE
T ss_pred EEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEE
Confidence 45799999999998 9999999999999999999999999999999999999862 333 346788999
Q ss_pred ecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHHHHHHHHHhhcccCCc-c
Q psy3001 265 IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVATSRQLKRLESVSRSPI-Y 341 (602)
Q Consensus 265 v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 341 (602)
++|++. ++. ..++.+++... ....... .....+..+.++.++..+. .
T Consensus 98 v~Q~~~-----------l~~------------------~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 98 VFQHFN-----------LWS------------------HMTVLENVMEAPIQVLGLSK-HDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp ECSSCC-----------CCT------------------TSCHHHHHHHHHHHTTCCCH-HHHHHHHHHHHHHTTCCHHHH
T ss_pred EecCcc-----------cCC------------------CCcHHHHHHhhHHHhcCCCH-HHHHHHHHHHHHHcCCCchhh
Confidence 999732 110 00111111000 0000000 0111222333445555555 5
Q ss_pred cccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEE
Q psy3001 342 SHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLV 419 (602)
Q Consensus 342 ~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~ 419 (602)
.....+|| ||||||++|||||+.+|++|||||||++||+.++..+.+.++++. +++|||+|||+++.+.. ||+|++
T Consensus 148 ~~~~~~LS--gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~ 225 (262)
T 1b0u_A 148 GKYPVHLS--GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF 225 (262)
T ss_dssp TSCGGGSC--HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEE
T ss_pred cCCcccCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 66677788 699999999999999999999999999999999999999998874 47999999999999987 999999
Q ss_pred EeCceEEeecChhHHhhc
Q psy3001 420 LDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 420 l~~G~i~~~g~~~~l~~~ 437 (602)
|++|++++.|++++++..
T Consensus 226 l~~G~i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 226 LHQGKIEEEGDPEQVFGN 243 (262)
T ss_dssp EETTEEEEEECHHHHHHS
T ss_pred EECCEEEEeCCHHHHHhC
Confidence 999999999999988764
No 33
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=1.2e-38 Score=328.25 Aligned_cols=207 Identities=19% Similarity=0.334 Sum_probs=162.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...++. ++.++||+|++.
T Consensus 16 ~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~------- 85 (362)
T 2it1_A 16 FTALNNINLKIKDG-EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWA------- 85 (362)
T ss_dssp SEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECTTCC-------
T ss_pred EEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEecCcc-------
Confidence 35799999999998 99999999999999999999999999999999999999877654 578999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+| ...++.+++.... ...... .....+..+.++.+++.........+|| |||||
T Consensus 86 ----l~------------------~~ltv~eni~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~r~~~~LS--GGq~Q 140 (362)
T 2it1_A 86 ----LY------------------PHMTVYKNIAFPLELRKAPR-EEIDKKVREVAKMLHIDKLLNRYPWQLS--GGQQQ 140 (362)
T ss_dssp ----CC------------------TTSCHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTCTTCTTCCGGGSC--HHHHH
T ss_pred ----cC------------------CCCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCchHhhCChhhCC--HHHHH
Confidence 11 0011111111100 000000 0111223344455666666677777888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++||||||||+||+..+..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999988743 7999999999999887 99999999999999999999
Q ss_pred Hhhcch
Q psy3001 434 LMKNKA 439 (602)
Q Consensus 434 l~~~~~ 439 (602)
++..+.
T Consensus 221 ~~~~p~ 226 (362)
T 2it1_A 221 VYYKPK 226 (362)
T ss_dssp HHHSCS
T ss_pred HHhCcc
Confidence 887643
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.5e-38 Score=313.91 Aligned_cols=205 Identities=30% Similarity=0.454 Sum_probs=155.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++| +|+|.++|.++...+...+++.++|+||++
T Consensus 34 ~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~--------- 102 (260)
T 2ghi_A 34 RTLKSINFFIPSG-TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDT--------- 102 (260)
T ss_dssp CSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSC---------
T ss_pred ceeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCC---------
Confidence 4699999999998 99999999999999999999999987 899999999998888888899999999973
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCChh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~G 353 (602)
.+| .. ++.+++.... ............ ...+.+..+ .........+.++| ||
T Consensus 103 --~l~-------------~~------tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LS--gG 159 (260)
T 2ghi_A 103 --ILF-------------NE------TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLS--GG 159 (260)
T ss_dssp --CCC-------------SE------EHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCC--HH
T ss_pred --ccc-------------cc------CHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCC--HH
Confidence 222 11 1111111100 000000000000 000100010 01112234556777 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
||||++|||||+++|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+..||++++|++|++++.|++++
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 239 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999998877899999999999987799999999999999999998
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
++..
T Consensus 240 l~~~ 243 (260)
T 2ghi_A 240 LLKL 243 (260)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
No 35
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-39 Score=315.96 Aligned_cols=204 Identities=28% Similarity=0.430 Sum_probs=155.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+||++
T Consensus 16 ~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~--------- 85 (243)
T 1mv5_A 16 QILRDISFEAQPN-SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDS--------- 85 (243)
T ss_dssp CSEEEEEEEECTT-EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSS---------
T ss_pred ceEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCC---------
Confidence 4699999999998 999999999999999999999999999999999999998877777888999999973
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHh--hc------ccCCcccccCCcCCC
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLE--SV------SRSPIYSHFGETVTG 350 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~------~~~~~~~~~~~~lsg 350 (602)
.+| .. ++.+++.......... ....+.++.+. .. +........+.++|
T Consensus 86 --~l~-------------~~------tv~enl~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LS- 141 (243)
T 1mv5_A 86 --AIM-------------AG------TIRENLTYGLEGDYTD--EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS- 141 (243)
T ss_dssp --CCC-------------CE------EHHHHTTSCTTSCSCH--HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCC-
T ss_pred --ccc-------------cc------cHHHHHhhhccCCCCH--HHHHHHHHHhChHHHHHhCccchhchhccCcCcCC-
Confidence 222 10 1111111100000000 01111122111 00 01111233455677
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
||||||++|||||+++|++|||||||++||+.++..+.+.++++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 142 -gGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~ 220 (243)
T 1mv5_A 142 -GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGK 220 (243)
T ss_dssp -HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSC
T ss_pred -HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCC
Confidence 6999999999999999999999999999999999999999988767899999999999886699999999999999999
Q ss_pred hhHHhhc
Q psy3001 431 PSVLMKN 437 (602)
Q Consensus 431 ~~~l~~~ 437 (602)
+++++..
T Consensus 221 ~~~~~~~ 227 (243)
T 1mv5_A 221 HNELVAT 227 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9888654
No 36
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.2e-38 Score=327.11 Aligned_cols=206 Identities=24% Similarity=0.378 Sum_probs=160.1
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...++ .++.++||+|++.
T Consensus 29 ~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~-------- 97 (355)
T 1z47_A 29 RSVRGVSFQIREG-EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQNYA-------- 97 (355)
T ss_dssp TCEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEECGGGC--------
T ss_pred EEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEEecCcc--------
Confidence 3689999999988 9999999999999999999999999999999999999987654 3678999999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+| ...++.+++.... ...... .....+..+.++.+++.........+|| ||||||
T Consensus 98 ---l~------------------~~ltv~eni~~~l~~~~~~~-~~~~~~v~~~l~~~gL~~~~~r~~~~LS--GGq~QR 153 (355)
T 1z47_A 98 ---LF------------------QHMTVYDNVSFGLREKRVPK-DEMDARVRELLRFMRLESYANRFPHELS--GGQQQR 153 (355)
T ss_dssp ---CC------------------TTSCHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTCGGGTTSCGGGSC--HHHHHH
T ss_pred ---cC------------------CCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCChhHhcCCcccCC--HHHHHH
Confidence 11 0011111111000 000000 0111223334445555555666777888 599999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|+|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++
T Consensus 154 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp HHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988743 7999999999999987 999999999999999999998
Q ss_pred hhcch
Q psy3001 435 MKNKA 439 (602)
Q Consensus 435 ~~~~~ 439 (602)
+..+.
T Consensus 234 ~~~p~ 238 (355)
T 1z47_A 234 YEKPG 238 (355)
T ss_dssp HHSCS
T ss_pred HhCcc
Confidence 76543
No 37
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=2.9e-38 Score=326.72 Aligned_cols=208 Identities=19% Similarity=0.324 Sum_probs=159.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...++. ++.++||+|++.
T Consensus 24 ~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~------- 93 (372)
T 1v43_A 24 FTAVNKLNLTIKDG-EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYA------- 93 (372)
T ss_dssp EEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC----------
T ss_pred EEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEecCcc-------
Confidence 45789999999888 99999999999999999999999999999999999999877654 578999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. ..++.+++..... ..... .....+..+.++.+++.........+|| |||||
T Consensus 94 ----l~~------------------~ltv~eni~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~r~~~~LS--GGq~Q 148 (372)
T 1v43_A 94 ----VWP------------------HMTVYENIAFPLKIKKFPK-DEIDKRVRWAAELLQIEELLNRYPAQLS--GGQRQ 148 (372)
T ss_dssp -------------------------CCCHHHHHHTTCC--CCCH-HHHHHHHHHHHHHTTCGGGTTSCTTTCC--SSCHH
T ss_pred ----cCC------------------CCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCChhHhcCChhhCC--HHHHH
Confidence 210 0011111111000 00000 0111223333445555566667778888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++|+||||||+||+..+..+.+.|+++.+ +.|+|+|||+++++.. ||||++|++|+++..|++++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 228 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988643 7999999999999977 99999999999999999999
Q ss_pred Hhhcchh
Q psy3001 434 LMKNKAS 440 (602)
Q Consensus 434 l~~~~~~ 440 (602)
++..+..
T Consensus 229 l~~~p~~ 235 (372)
T 1v43_A 229 VYLRPNS 235 (372)
T ss_dssp HHHCCSB
T ss_pred HHhCccc
Confidence 8876433
No 38
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=1.9e-38 Score=317.49 Aligned_cols=209 Identities=21% Similarity=0.264 Sum_probs=157.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC--CCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++. ..+...+++.++|++|++...+.
T Consensus 34 ~~vL~~isl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~- 111 (279)
T 2ihy_A 34 KTILKKISWQIAKG-DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQ- 111 (279)
T ss_dssp EEEEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSC-
T ss_pred EEEEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccC-
Confidence 35688888888887 999999999999999999999999999999999999987 67777888999999997532110
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccc--hhHH--HHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS--NLQR--FYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
. ..++.+++...... .... ......+..+.++.++..........+||
T Consensus 112 ----------------------~----~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS-- 163 (279)
T 2ihy_A 112 ----------------------E----GERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLS-- 163 (279)
T ss_dssp ----------------------T----TSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSC--
T ss_pred ----------------------C----CCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCC--
Confidence 0 00111111000000 0000 00011122233344455444556666788
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEE--EEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTV--LTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tv--i~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|| |+|||+++.+.. ||+|++|++|++++
T Consensus 164 gGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 6999999999999999999999999999999999999999988743 7899 999999999987 99999999999999
Q ss_pred ecChhHHhh
Q psy3001 428 FDSPSVLMK 436 (602)
Q Consensus 428 ~g~~~~l~~ 436 (602)
.|+++++..
T Consensus 244 ~g~~~~~~~ 252 (279)
T 2ihy_A 244 QGAVEDILT 252 (279)
T ss_dssp EEEHHHHCS
T ss_pred ECCHHHHhc
Confidence 998887754
No 39
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=4e-38 Score=308.31 Aligned_cols=201 Identities=25% Similarity=0.333 Sum_probs=156.3
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++|+||++.+ ++++|+||||||||||+|+|+|+++|++|+|.++|.++.... ..++.++|+||++.
T Consensus 14 ~l~~isl~i~~--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~--------- 80 (240)
T 2onk_A 14 FRLNVDFEMGR--DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYA--------- 80 (240)
T ss_dssp EEEEEEEEECS--SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCC---------
T ss_pred EEeeeEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCc---------
Confidence 38999999987 999999999999999999999999999999999999987543 34678999999742
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
++ . ..++.+++.... ...... ...+..+.++.++..........++| ||||||+
T Consensus 81 --l~-------------~-----~ltv~enl~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS--gGqkqRv 135 (240)
T 2onk_A 81 --LF-------------P-----HLSVYRNIAYGLRNVERVE---RDRRVREMAEKLGIAHLLDRKPARLS--GGERQRV 135 (240)
T ss_dssp --CC-------------T-----TSCHHHHHHTTCTTSCHHH---HHHHHHHHHHTTTCTTTTTCCGGGSC--HHHHHHH
T ss_pred --cC-------------C-----CCcHHHHHHHHHHHcCCch---HHHHHHHHHHHcCCHHHhcCChhhCC--HHHHHHH
Confidence 11 0 001111111100 000111 11223334445555555566667788 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+|||||+.+|++|||||||++||+.+++.+.+.++++. + ++|||++||+++.+.. ||++++|++|++++.|++++++
T Consensus 136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998874 3 7999999999999877 9999999999999999999887
Q ss_pred hcc
Q psy3001 436 KNK 438 (602)
Q Consensus 436 ~~~ 438 (602)
...
T Consensus 216 ~~~ 218 (240)
T 2onk_A 216 SAK 218 (240)
T ss_dssp HSC
T ss_pred hCc
Confidence 653
No 40
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.6e-38 Score=315.12 Aligned_cols=205 Identities=24% Similarity=0.315 Sum_probs=155.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++... .+++.++|++|++...+
T Consensus 20 ~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~i~~v~q~~~~~~---- 91 (266)
T 2yz2_A 20 KKALENVSLVINEG-ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRNIGIAFQYPEDQF---- 91 (266)
T ss_dssp EEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGGEEEECSSGGGGC----
T ss_pred cceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---HhhhhEEEEeccchhhc----
Confidence 35799999999998 99999999999999999999999999999999999988642 67789999999842211
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC--CcccccCCcCCCChhhH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS--PIYSHFGETVTGNVGQR 355 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~lsgs~Gq~ 355 (602)
+ . .++.+++.......... .....+..+.++.++.. ........++| ||||
T Consensus 92 -----~-------------~------~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~~LS--gGq~ 144 (266)
T 2yz2_A 92 -----F-------------A------ERVFDEVAFAVKNFYPD-RDPVPLVKKAMEFVGLDFDSFKDRVPFFLS--GGEK 144 (266)
T ss_dssp -----C-------------C------SSHHHHHHHTTTTTCTT-SCSHHHHHHHHHHTTCCHHHHTTCCGGGSC--HHHH
T ss_pred -----C-------------C------CcHHHHHHHHHHhcCCH-HHHHHHHHHHHHHcCcCCcccccCChhhCC--HHHH
Confidence 0 0 01111110000000000 00001122223344444 44455566777 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.|++++
T Consensus 145 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 224 (266)
T 2yz2_A 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998874 47999999999999987 99999999999999998888
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
++..
T Consensus 225 ~~~~ 228 (266)
T 2yz2_A 225 FLEK 228 (266)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7653
No 41
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.3e-38 Score=329.53 Aligned_cols=210 Identities=32% Similarity=0.578 Sum_probs=157.6
Q ss_pred CCCCCcEEEeeeEEEE---------------ecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH
Q psy3001 193 WPEKGEVEFKDYKVRY---------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT 257 (602)
Q Consensus 193 ~~~~~~i~~~~vs~~~---------------~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~ 257 (602)
|+..+.++++|++++| .+| |+++|+||||||||||+++|+|+++ ++|+|.++|+++..+++..
T Consensus 14 ~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp SSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCC-CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 3444455666666655 344 8999999999999999999999998 9999999999999999999
Q ss_pred HhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhccc
Q psy3001 258 LRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSR 337 (602)
Q Consensus 258 ~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (602)
+++.++||+|++ .+| ..+ +.+++....... .. ...+.++ .+++
T Consensus 92 ~rr~ig~v~Q~~-----------~lf-------------~~t------v~enl~~~~~~~-~~---~v~~~l~---~~~L 134 (390)
T 3gd7_A 92 WRKAFGVIPQKV-----------FIF-------------SGT------FRKNLDPNAAHS-DQ---EIWKVAD---EVGL 134 (390)
T ss_dssp HHHTEEEESCCC-----------CCC-------------SEE------HHHHHCTTCCSC-HH---HHHHHHH---HTTC
T ss_pred HhCCEEEEcCCc-----------ccC-------------ccC------HHHHhhhccccC-HH---HHHHHHH---HhCC
Confidence 999999999983 222 111 111110000000 00 0111111 1221
Q ss_pred CCc-----------ccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeee
Q psy3001 338 SPI-----------YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH 406 (602)
Q Consensus 338 ~~~-----------~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 406 (602)
... ..+.+.+|| |||||||+|||||+++|++||||||||+||+.++..+.+.|++...++|+|+|||
T Consensus 135 ~~~~~~~p~~l~~~i~~~g~~LS--GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtH 212 (390)
T 3gd7_A 135 RSVIEQFPGKLDFVLVDGGCVLS--HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEA 212 (390)
T ss_dssp HHHHTTSTTGGGCEECTTTTTSC--HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECS
T ss_pred HHHHhhcccccccccccccccCC--HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 111 223344477 6999999999999999999999999999999999999999988777899999999
Q ss_pred cccccccCCeEEEEeCceEEeecChhHHhhcchhHHH
Q psy3001 407 RLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFY 443 (602)
Q Consensus 407 ~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 443 (602)
+++.+..||||++|++|+|++.|++++++..+...|.
T Consensus 213 d~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~v 249 (390)
T 3gd7_A 213 RIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249 (390)
T ss_dssp SSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHH
T ss_pred CHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHH
Confidence 9988777999999999999999999999887655443
No 42
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.7e-38 Score=327.20 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=159.4
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC---hHHHhhccceecccchhhhhhc
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~---~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
.++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++.... ....++.++||+|++.
T Consensus 20 vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~------ 92 (353)
T 1oxx_K 20 ALDNVNINIENG-ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA------ 92 (353)
T ss_dssp EEEEEEEEECTT-CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSC------
T ss_pred eEeceEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCc------
Confidence 799999999998 999999999999999999999999999999999999986521 2234678999999732
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
+|. ..++.+++..... ..... .....+..+.++.+++.........+|| ||||
T Consensus 93 -----l~~------------------~ltv~eni~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~~~~~~LS--GGq~ 146 (353)
T 1oxx_K 93 -----LYP------------------NLTAFENIAFPLTNMKMSK-EEIRKRVEEVAKILDIHHVLNHFPRELS--GAQQ 146 (353)
T ss_dssp -----CCT------------------TSCHHHHHHGGGTTSSCCH-HHHHHHHHHHHHHTTCGGGTTSCGGGSC--HHHH
T ss_pred -----cCC------------------CCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCchHhcCChhhCC--HHHH
Confidence 110 0011111111000 00000 0111223333445555555666777888 5999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
||++|||||+.+|++||||||||+||+..+..+.+.|+++.+ ++|+|+|||+++++.. ||||++|++|++++.|+++
T Consensus 147 QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~ 226 (353)
T 1oxx_K 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPE 226 (353)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999988743 7999999999999987 9999999999999999999
Q ss_pred HHhhcch
Q psy3001 433 VLMKNKA 439 (602)
Q Consensus 433 ~l~~~~~ 439 (602)
+++..+.
T Consensus 227 ~l~~~p~ 233 (353)
T 1oxx_K 227 DLYDNPV 233 (353)
T ss_dssp HHHHSCS
T ss_pred HHHhCcc
Confidence 9876543
No 43
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=3e-38 Score=327.30 Aligned_cols=208 Identities=19% Similarity=0.331 Sum_probs=160.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC------CChHHHhhccceecccchh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT------LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~------~~~~~~~~~i~~v~Q~~~~ 271 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .++. ++.++||+|++.
T Consensus 16 ~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~--~r~ig~v~Q~~~- 91 (372)
T 1g29_1 16 VTAVREMSLEVKDG-EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK--DRDIAMVFQSYA- 91 (372)
T ss_dssp EEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG--GSSEEEECSCCC-
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh--HCCEEEEeCCCc-
Confidence 45799999999998 9999999999999999999999999999999999999865 4443 578999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg 350 (602)
+| ...++.+++.... ...... .....+..+.++.+++.........+||
T Consensus 92 ----------l~------------------~~ltv~eni~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~r~~~~LS- 141 (372)
T 1g29_1 92 ----------LY------------------PHMTVYDNIAFPLKLRKVPR-QEIDQRVREVAELLGLTELLNRKPRELS- 141 (372)
T ss_dssp ----------CC------------------TTSCHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTCGGGTTCCGGGSC-
T ss_pred ----------cC------------------CCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHCCCchHhcCCcccCC-
Confidence 11 0011111111000 000000 0111222333444555555666777888
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
|||||||+|||||+.+|++||||||||+||+..+..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++
T Consensus 142 -GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 142 -GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp -HHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence 5999999999999999999999999999999999999999988643 7999999999999987 99999999999999
Q ss_pred ecChhHHhhcchh
Q psy3001 428 FDSPSVLMKNKAS 440 (602)
Q Consensus 428 ~g~~~~l~~~~~~ 440 (602)
.|++++++..+..
T Consensus 221 ~g~~~~l~~~p~~ 233 (372)
T 1g29_1 221 VGSPDEVYDKPAN 233 (372)
T ss_dssp EECHHHHHHSCSB
T ss_pred eCCHHHHHhCccc
Confidence 9999998876433
No 44
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=3.9e-38 Score=309.86 Aligned_cols=199 Identities=18% Similarity=0.252 Sum_probs=157.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++|+||++.+| ++++|+||||||||||+|+|+|+++|+ |+|.++|.++...+...+++.++|++|++..
T Consensus 15 vl~~vsl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~-------- 84 (249)
T 2qi9_C 15 RLGPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTP-------- 84 (249)
T ss_dssp TEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCC--------
T ss_pred EEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCcc--------
Confidence 589999999998 999999999999999999999999999 9999999999888888889999999997421
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLIC 359 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~ 359 (602)
+. ..++.+++......... ..+..+.++.++...........+| ||||||++
T Consensus 85 ---~~------------------~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS--gGq~qrv~ 136 (249)
T 2qi9_C 85 ---PF------------------ATPVWHYLTLHQHDKTR-----TELLNDVAGALALDDKLGRSTNQLS--GGEWQRVR 136 (249)
T ss_dssp ---CT------------------TCBHHHHHHTTCSSTTC-----HHHHHHHHHHTTCGGGTTSBGGGCC--HHHHHHHH
T ss_pred ---CC------------------CCcHHHHHHHhhccCCc-----HHHHHHHHHHcCChhHhcCChhhCC--HHHHHHHH
Confidence 10 00111111110000000 1112223334444444555667788 69999999
Q ss_pred HHHHHhhCCC-------eEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 360 LARALLRKTK-------ILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 360 lAral~~~p~-------iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||+.+|+ +|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 137 lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 137 LAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216 (249)
T ss_dssp HHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999 999999999999999999999998874 47999999999999976 99999999999999998
Q ss_pred hhHHhh
Q psy3001 431 PSVLMK 436 (602)
Q Consensus 431 ~~~l~~ 436 (602)
++++..
T Consensus 217 ~~~~~~ 222 (249)
T 2qi9_C 217 REEVLT 222 (249)
T ss_dssp HHHHSC
T ss_pred HHHHhc
Confidence 888754
No 45
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=3e-38 Score=324.09 Aligned_cols=202 Identities=24% Similarity=0.356 Sum_probs=160.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...++ .++.++||+|++.
T Consensus 15 ~l~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~--------- 82 (348)
T 3d31_A 15 SLDNLSLKVESG-EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYS--------- 82 (348)
T ss_dssp EEEEEEEEECTT-CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCC---------
T ss_pred EEeeeEEEEcCC-CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcc---------
Confidence 799999999998 9999999999999999999999999999999999999987554 4678999999732
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccc-hhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS-NLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+| ...++.+++...... .... . .+..+.++.+++.........+|| ||||||+
T Consensus 83 --l~------------------~~ltv~enl~~~~~~~~~~~---~-~~v~~~l~~~~L~~~~~~~~~~LS--gGq~QRv 136 (348)
T 3d31_A 83 --LF------------------PHMNVKKNLEFGMRMKKIKD---P-KRVLDTARDLKIEHLLDRNPLTLS--GGEQQRV 136 (348)
T ss_dssp --CC------------------TTSCHHHHHHHHHHHHCCCC---H-HHHHHHHHHTTCTTTTTSCGGGSC--HHHHHHH
T ss_pred --cC------------------CCCCHHHHHHHHHHHcCCCH---H-HHHHHHHHHcCCchHhcCChhhCC--HHHHHHH
Confidence 11 000111111100000 0000 0 223334445666666677777888 5999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+|||||+.+|++|+||||||+||+.++..+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|+++..|++++++
T Consensus 137 alAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999988743 7999999999999887 9999999999999999999988
Q ss_pred hcch
Q psy3001 436 KNKA 439 (602)
Q Consensus 436 ~~~~ 439 (602)
..+.
T Consensus 217 ~~p~ 220 (348)
T 3d31_A 217 EKPV 220 (348)
T ss_dssp SSCC
T ss_pred hCcc
Confidence 6543
No 46
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=7.9e-37 Score=301.80 Aligned_cols=200 Identities=21% Similarity=0.275 Sum_probs=148.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc--cCCCCceEEECCeecCCCChHHH-hhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~--~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+ ++|++|+|.++|.++...+.... +..++|++|++.
T Consensus 16 ~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~---- 90 (250)
T 2d2e_A 16 ETILKGVNLVVPKG-EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPV---- 90 (250)
T ss_dssp EEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC----
T ss_pred EEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCc----
Confidence 45799999999998 99999999999999999999999 88999999999999988876655 456899999742
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc------ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCc
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP------FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGET 347 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~ 347 (602)
++.. .++.+++... ............. +.++.++.. .........
T Consensus 91 -------~~~~------------------~tv~e~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~~ 142 (250)
T 2d2e_A 91 -------EVPG------------------VTIANFLRLALQAKLGREVGVAEFWTKVK---KALELLDWDESYLSRYLNE 142 (250)
T ss_dssp --------CCS------------------CBHHHHHHHHHHHHHTSCCCHHHHHHHHH---HHHHHHTCCGGGGGSBTTC
T ss_pred -------cccC------------------CCHHHHHHHHHHhhccccCCHHHHHHHHH---HHHHHcCCChhHhcCCccc
Confidence 1100 0011110000 0000011111122 223334442 334444455
Q ss_pred -CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc--CCeEEEEeCc
Q psy3001 348 -VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID--SDRVLVLDKG 423 (602)
Q Consensus 348 -lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~--~d~i~~l~~G 423 (602)
+| ||||||++|||||+++|++|||||||++||+.++..+.+.|+++. +++|||+|||+++.+.. ||++++|++|
T Consensus 143 ~LS--gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G 220 (250)
T 2d2e_A 143 GFS--GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDG 220 (250)
T ss_dssp C------HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETT
T ss_pred CCC--HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECC
Confidence 77 599999999999999999999999999999999999999998875 47999999999999886 4999999999
Q ss_pred eEEeecChh
Q psy3001 424 LVVEFDSPS 432 (602)
Q Consensus 424 ~i~~~g~~~ 432 (602)
++++.|+++
T Consensus 221 ~i~~~g~~~ 229 (250)
T 2d2e_A 221 RVVATGGPE 229 (250)
T ss_dssp EEEEEESHH
T ss_pred EEEEEeCHH
Confidence 999998876
No 47
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=4.6e-36 Score=298.88 Aligned_cols=209 Identities=17% Similarity=0.207 Sum_probs=151.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc--cCCCCceEEECCeecCCCChHHH-hhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~--~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+ ++|++|+|.++|.++...+.... +..++|++|++..
T Consensus 33 ~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l--- 108 (267)
T 2zu0_C 33 KAILRGLSLDVHPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVE--- 108 (267)
T ss_dssp EEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCC---
T ss_pred EEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccc---
Confidence 45788888888888 99999999999999999999999 57899999999999987776655 4569999997421
Q ss_pred hccCCceeEeeecccceeeeccccceeecccc-ccccc--ccc-cchhHHHHHHHHHHHHHHhhcccC-CcccccCC-cC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV-KPLII--TPF-CSNLQRFYVATSRQLKRLESVSRS-PIYSHFGE-TV 348 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~l 348 (602)
+. ..+...+-.. ..... ... ........ .+..+.++.++.. ........ +|
T Consensus 109 --------~~------------~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gl~~~~~~~~~~~~L 165 (267)
T 2zu0_C 109 --------IP------------GVSNQFFLQTALNAVRSYRGQETLDRFDFQ---DLMEEKIALLKMPEDLLTRSVNVGF 165 (267)
T ss_dssp --------CT------------TCBHHHHHHHHHHHHHHGGGCCCCCHHHHH---HHHHHHHHHTTCCTTTTTSBTTTTC
T ss_pred --------cc------------cccHHHHHHHHHHhhhhhhccccCCHHHHH---HHHHHHHHHcCCChhHhcCCcccCC
Confidence 10 0000000000 00000 000 00000111 1222333344443 23333333 47
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc--CCeEEEEeCceE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID--SDRVLVLDKGLV 425 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~--~d~i~~l~~G~i 425 (602)
| ||||||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||++++|++|++
T Consensus 166 S--gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i 243 (267)
T 2zu0_C 166 S--GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 243 (267)
T ss_dssp C--HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEE
T ss_pred C--HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEE
Confidence 7 699999999999999999999999999999999999999999874 47999999999999875 899999999999
Q ss_pred EeecChhHHh
Q psy3001 426 VEFDSPSVLM 435 (602)
Q Consensus 426 ~~~g~~~~l~ 435 (602)
++.|+++++.
T Consensus 244 ~~~g~~~~~~ 253 (267)
T 2zu0_C 244 VKSGDFTLVK 253 (267)
T ss_dssp EEEECTTHHH
T ss_pred EEEcCHHHHh
Confidence 9999887653
No 48
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=9.2e-37 Score=298.66 Aligned_cols=192 Identities=22% Similarity=0.352 Sum_probs=142.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++| .++|+||++.
T Consensus 19 ~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~-------- 76 (237)
T 2cbz_A 19 PTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVPQQAW-------- 76 (237)
T ss_dssp CSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEECSSCC--------
T ss_pred ceeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEEcCCCc--------
Confidence 4699999999998 99999999999999999999999999999999998 3899999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-----CcccccCCcCCCChh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-----PIYSHFGETVTGNVG 353 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~lsgs~G 353 (602)
++ .. ++.+++....... ........+..+..+.+... ......+.++| ||
T Consensus 77 ---~~-------------~~------tv~enl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS--gG 131 (237)
T 2cbz_A 77 ---IQ-------------ND------SLRENILFGCQLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLS--GG 131 (237)
T ss_dssp ---CC-------------SE------EHHHHHHTTSCCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCC--HH
T ss_pred ---CC-------------Cc------CHHHHhhCccccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCC--HH
Confidence 11 00 1111111000000 00001111111111111111 12345566777 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHH---HhccccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR---SEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~---~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
||||++|||||+.+|++|||||||++||+.++..+.+.+. ...+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 132 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~ 211 (237)
T 2cbz_A 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGS 211 (237)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCC
Confidence 9999999999999999999999999999999999999884 3445799999999999986799999999999999999
Q ss_pred hhHHhhc
Q psy3001 431 PSVLMKN 437 (602)
Q Consensus 431 ~~~l~~~ 437 (602)
+++++..
T Consensus 212 ~~~~~~~ 218 (237)
T 2cbz_A 212 YQELLAR 218 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9988754
No 49
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.2e-36 Score=299.63 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=152.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccc-eecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLT-IIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~-~v~Q~~~~~~~~~ 276 (602)
...++|+||++. | ++++|+||||||||||+|+|+|++ |++|+|.++|.++... .. ++.++ |+||++..
T Consensus 18 ~~il~~vsl~i~-G-e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l----- 86 (263)
T 2pjz_A 18 RFSLENINLEVN-G-EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEI----- 86 (263)
T ss_dssp EEEEEEEEEEEC-S-SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCT-----
T ss_pred ceeEEeeeEEEC-C-EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCcc-----
Confidence 457999999999 7 999999999999999999999999 9999999999988654 23 67899 99997421
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~ 355 (602)
..++.+++.... ... .....+..+.++.++.. ........+|| ||||
T Consensus 87 --------------------------~~tv~enl~~~~--~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LS--gGqk 134 (263)
T 2pjz_A 87 --------------------------GVTVNDIVYLYE--ELK--GLDRDLFLEMLKALKLGEEILRRKLYKLS--AGQS 134 (263)
T ss_dssp --------------------------TSBHHHHHHHHH--HHT--CCCHHHHHHHHHHTTCCGGGGGSBGGGSC--HHHH
T ss_pred --------------------------CCcHHHHHHHhh--hhc--chHHHHHHHHHHHcCCChhHhcCChhhCC--HHHH
Confidence 011111110000 000 00011122333344555 55566677788 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CC-eEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SD-RVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d-~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|+|||||++||+.++..+.+.|+++.+ |+|++||+++.+.. || ++++|++|++++.|++++
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~ 212 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSE 212 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999999988755 99999999999877 99 999999999999999888
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+...
T Consensus 213 l~~~ 216 (263)
T 2pjz_A 213 LLES 216 (263)
T ss_dssp HHTE
T ss_pred HHhh
Confidence 7643
No 50
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.1e-36 Score=292.68 Aligned_cols=194 Identities=24% Similarity=0.366 Sum_probs=141.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++++| ++++|+||||||||||+|+|+|+++|++|+|.++| .++|+||++
T Consensus 21 ~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~v~q~~-------- 78 (229)
T 2pze_A 21 TPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFS-------- 78 (229)
T ss_dssp CCSEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEEECSSC--------
T ss_pred ceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEEEecCC--------
Confidence 34699999999998 99999999999999999999999999999999998 489999973
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH--HHHHHHhhcc--cCCcccccCCcCCCChh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS--RQLKRLESVS--RSPIYSHFGETVTGNVG 353 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~--~~~~~~~~~~~lsgs~G 353 (602)
.++ .. ++.+++................ ...+.+.... ........+.++| ||
T Consensus 79 ---~~~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS--gG 134 (229)
T 2pze_A 79 ---WIM-------------PG------TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS--GG 134 (229)
T ss_dssp ---CCC-------------SB------CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSC--HH
T ss_pred ---ccc-------------CC------CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCC--HH
Confidence 222 11 1111111100000000000000 0001111110 0112233456677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHH-HHhccccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI-RSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
||||++|||||+++|++|||||||++||+.++..+.+.+ +...+++|+|++||+++.+..||++++|++|++++.|+++
T Consensus 135 qkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~ 214 (229)
T 2pze_A 135 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFS 214 (229)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999864 4554578999999999988669999999999999999998
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
++...
T Consensus 215 ~~~~~ 219 (229)
T 2pze_A 215 ELQNL 219 (229)
T ss_dssp HHHTC
T ss_pred HHHhc
Confidence 88654
No 51
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.7e-36 Score=296.18 Aligned_cols=190 Identities=24% Similarity=0.431 Sum_probs=145.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|. +++.++|+||++....
T Consensus 18 ~~vl~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v~q~~~~~~---- 79 (253)
T 2nq2_C 18 NFLFQQLNFDLNKG-DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFVPQFFSSPF---- 79 (253)
T ss_dssp TEEEEEEEEEEETT-CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEECSCCCCSS----
T ss_pred CeEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEEcCCCccCC----
Confidence 45799999999998 99999999999999999999999999999998 2567999999743210
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-------chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-------SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg 350 (602)
.. ++.+++..... ....... .+..+.++.++..+.......++|
T Consensus 80 -------------------~~------tv~enl~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS- 130 (253)
T 2nq2_C 80 -------------------AY------SVLDIVLMGRSTHINTFAKPKSHDY---QVAMQALDYLNLTHLAKREFTSLS- 130 (253)
T ss_dssp -------------------CC------BHHHHHHGGGGGGSCTTCCCCHHHH---HHHHHHHHHTTCGGGTTSBGGGSC-
T ss_pred -------------------CC------CHHHHHHHhhhhhcccccCCCHHHH---HHHHHHHHHcCChHHhcCChhhCC-
Confidence 00 11111100000 0000111 122223334444444555666788
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
||||||++|||||+.+|++|||||||++||+.++..+.+.++++.+ ++|||++||+++.+.. ||++++|++|+ ++
T Consensus 131 -gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 131 -GGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp -HHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred -HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 6999999999999999999999999999999999999999988743 7999999999999977 99999999999 88
Q ss_pred ecChhHHhh
Q psy3001 428 FDSPSVLMK 436 (602)
Q Consensus 428 ~g~~~~l~~ 436 (602)
.|+++++..
T Consensus 209 ~g~~~~~~~ 217 (253)
T 2nq2_C 209 FGETRNILT 217 (253)
T ss_dssp EEEHHHHCC
T ss_pred cCCHHHHhC
Confidence 888887753
No 52
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.3e-34 Score=277.91 Aligned_cols=185 Identities=18% Similarity=0.282 Sum_probs=137.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++. .+++.++|+||++..
T Consensus 23 ~il~~vsl~i~~G-e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~q~~~~------- 89 (214)
T 1sgw_A 23 PVLERITMTIEKG-NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIV------- 89 (214)
T ss_dssp EEEEEEEEEEETT-CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSSCCC-------
T ss_pred eEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEeCCCcC-------
Confidence 5799999999988 999999999999999999999999999999999999875 357889999997421
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+. . .++.+++.... ...... ...+..+.++.++.... .....++| ||||||
T Consensus 90 ----~~------------~------~tv~enl~~~~~~~~~~~---~~~~~~~~l~~~gl~~~-~~~~~~LS--gGqkqr 141 (214)
T 1sgw_A 90 ----PR------------K------ISVEDYLKAVASLYGVKV---NKNEIMDALESVEVLDL-KKKLGELS--QGTIRR 141 (214)
T ss_dssp ----CT------------T------SBHHHHHHHHHHHTTCCC---CHHHHHHHHHHTTCCCT-TSBGGGSC--HHHHHH
T ss_pred ----CC------------C------CCHHHHHHHHHHhcCCch---HHHHHHHHHHHcCCCcC-CCChhhCC--HHHHHH
Confidence 10 0 01111100000 000000 01112223334555544 55666777 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
++|||||+.+|++|||||||++||+.++..+.+.++++. +++|||++||+++.+.. ||+++. ..|+|
T Consensus 142 v~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 142 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp HHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG-GBC--
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-eCCcc
Confidence 999999999999999999999999999999999998875 47899999999999988 777653 34444
No 53
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=2.6e-34 Score=288.55 Aligned_cols=190 Identities=25% Similarity=0.387 Sum_probs=138.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++| .++|+||++.
T Consensus 52 ~vl~~isl~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~-------- 109 (290)
T 2bbs_A 52 PVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSW-------- 109 (290)
T ss_dssp CSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEECSSCC--------
T ss_pred eEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEeCCCc--------
Confidence 4699999999998 99999999999999999999999999999999998 4899999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHH---HHHHhhcc--cCCcccccCCcCCCChh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ---LKRLESVS--RSPIYSHFGETVTGNVG 353 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~--~~~~~~~~~~~lsgs~G 353 (602)
++ .. ++.+++. ........ .....+. .+.+.... ........+..+| ||
T Consensus 110 ---l~-------------~~------tv~enl~-~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LS--gG 163 (290)
T 2bbs_A 110 ---IM-------------PG------TIKENII-GVSYDEYR-YRSVIKACQLEEDISKFAEKDNIVLGEGGITLS--GG 163 (290)
T ss_dssp ---CC-------------SS------BHHHHHH-TTCCCHHH-HHHHHHHTTCHHHHHTSTTGGGCBC----CCCC--HH
T ss_pred ---cC-------------cc------cHHHHhh-CcccchHH-HHHHHHHhChHHHHHhccccccchhcCccCcCC--HH
Confidence 21 10 1111111 00000000 0000000 01111110 0111233345677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHH-HHhccccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI-RSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
||||++|||||+++|++|||||||++||+.++..+.+.+ +...+++|||++||+++.+..||++++|++|++++.|+++
T Consensus 164 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~ 243 (290)
T 2bbs_A 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFS 243 (290)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999998864 4444578999999999988669999999999999999998
Q ss_pred HHhh
Q psy3001 433 VLMK 436 (602)
Q Consensus 433 ~l~~ 436 (602)
++..
T Consensus 244 ~l~~ 247 (290)
T 2bbs_A 244 ELQN 247 (290)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8864
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.96 E-value=2.3e-30 Score=285.12 Aligned_cols=187 Identities=25% Similarity=0.335 Sum_probs=136.7
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
|++++|++.+| |++||+||||||||||+|+|+|+++|++|+|.+ +..++|+||++...+
T Consensus 372 l~~~~~~v~~G-ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~~------- 430 (607)
T 3bk7_A 372 LEVEPGEIRKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEY------- 430 (607)
T ss_dssp EEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCCC-------
T ss_pred EEecccccCCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCCC-------
Confidence 33333344455 999999999999999999999999999999976 236899999742110
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICL 360 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~l 360 (602)
. .++.+.+.. ..........+..+.++.++..+.......+|| |||||||+|
T Consensus 431 ----------------~------~tv~e~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--GGe~QRv~i 482 (607)
T 3bk7_A 431 ----------------E------GTVYELLSK----IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLS--GGELQRVAI 482 (607)
T ss_dssp ----------------S------SBHHHHHHH----HHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCC--HHHHHHHHH
T ss_pred ----------------C------CcHHHHHHh----hhccCCCHHHHHHHHHHHcCCchHhcCChhhCC--HHHHHHHHH
Confidence 0 011111000 000000001112222334444455556666788 699999999
Q ss_pred HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC--ceEEeecChhHHh
Q psy3001 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK--GLVVEFDSPSVLM 435 (602)
Q Consensus 361 Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~--G~i~~~g~~~~l~ 435 (602)
||||+++|++|||||||++||+.+...+.+.|+++. .+.|+|+|||+++++.. |||+++|++ |++...|++++++
T Consensus 483 AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 999999999999999999999999999999999874 47999999999999987 999999986 7777888887765
Q ss_pred h
Q psy3001 436 K 436 (602)
Q Consensus 436 ~ 436 (602)
.
T Consensus 563 ~ 563 (607)
T 3bk7_A 563 E 563 (607)
T ss_dssp H
T ss_pred h
Confidence 4
No 55
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.96 E-value=1.9e-30 Score=282.98 Aligned_cols=187 Identities=24% Similarity=0.322 Sum_probs=135.2
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
|++++|++.+| |++||+|+||||||||+|+|+|+++|++|+|.+ ...++|+||++...+
T Consensus 302 l~~~~~~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~~------- 360 (538)
T 1yqt_A 302 LEVEPGEIKKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKADY------- 360 (538)
T ss_dssp EEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCCC-------
T ss_pred EEeCccccCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCCC-------
Confidence 33333444556 999999999999999999999999999999975 236899999742110
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICL 360 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~l 360 (602)
..++.+.+.. ..........+..+.++.++..+........|| ||||||++|
T Consensus 361 ----------------------~~tv~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--GGe~qrv~l 412 (538)
T 1yqt_A 361 ----------------------EGTVYELLSK----IDASKLNSNFYKTELLKPLGIIDLYDREVNELS--GGELQRVAI 412 (538)
T ss_dssp ----------------------SSBHHHHHHH----HHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCC--HHHHHHHHH
T ss_pred ----------------------CCcHHHHHHh----hhccCCCHHHHHHHHHHHcCChhhhcCChhhCC--HHHHHHHHH
Confidence 0011111000 000000001111222333333344455566777 699999999
Q ss_pred HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC--ceEEeecChhHHh
Q psy3001 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK--GLVVEFDSPSVLM 435 (602)
Q Consensus 361 Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~--G~i~~~g~~~~l~ 435 (602)
||||+.+|++|||||||++||+.+...+.+.|+++. .+.|||+|||+++++.. ||||++|++ |++...|++++++
T Consensus 413 AraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 999999999999999999999999999999999864 47999999999999987 999999986 7788888887765
Q ss_pred h
Q psy3001 436 K 436 (602)
Q Consensus 436 ~ 436 (602)
.
T Consensus 493 ~ 493 (538)
T 1yqt_A 493 E 493 (538)
T ss_dssp H
T ss_pred h
Confidence 4
No 56
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.96 E-value=4.7e-30 Score=279.04 Aligned_cols=187 Identities=18% Similarity=0.244 Sum_probs=131.2
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
++++++++.+| |++||+|+||||||||+++|+|+++|++|+|.+++. .++++||++...+
T Consensus 284 l~~~~~~i~~G-ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i~~~~q~~~~~~------- 343 (538)
T 3ozx_A 284 LVVDNGEAKEG-EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------ILSYKPQRIFPNY------- 343 (538)
T ss_dssp EEECCEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CEEEECSSCCCCC-------
T ss_pred EEeccceECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------eeEeechhccccc-------
Confidence 33334444566 999999999999999999999999999999997753 5788888632110
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICL 360 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~l 360 (602)
..+... .+... ......... ....+.++.++..........+|| |||||||+|
T Consensus 344 ----------------~~tv~~--~l~~~-~~~~~~~~~------~~~~~~l~~~~l~~~~~~~~~~LS--GGq~QRv~i 396 (538)
T 3ozx_A 344 ----------------DGTVQQ--YLENA-SKDALSTSS------WFFEEVTKRLNLHRLLESNVNDLS--GGELQKLYI 396 (538)
T ss_dssp ----------------SSBHHH--HHHHH-CSSTTCTTS------HHHHHTTTTTTGGGCTTSBGGGCC--HHHHHHHHH
T ss_pred ----------------CCCHHH--HHHHh-hhhccchhH------HHHHHHHHHcCCHHHhcCChhhCC--HHHHHHHHH
Confidence 000000 00000 000000000 011122223344444555667788 699999999
Q ss_pred HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC--ceEEeecChhHH
Q psy3001 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK--GLVVEFDSPSVL 434 (602)
Q Consensus 361 Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~--G~i~~~g~~~~l 434 (602)
||||+.+|++|||||||++||+.+...+.+.|+++. .++|||+|||+++++.. ||||++|++ |.....+++.++
T Consensus 397 AraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 397 AATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 999999999999999999999999999999998874 37899999999999988 999999986 444445555443
No 57
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.96 E-value=1.5e-30 Score=293.30 Aligned_cols=256 Identities=15% Similarity=0.144 Sum_probs=163.6
Q ss_pred ccCCChhHHHHHHhcc---------cCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccc
Q psy3001 220 RTGAGKSSLTLALFRI---------IEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVS 290 (602)
Q Consensus 220 ~sGsGKSTL~~ll~g~---------~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~ 290 (602)
.+..||+++.+.+... +.|..|+|.++|.++.++....+.+..+++.|.+..+++....
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~------------ 337 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAE------------ 337 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTT------------
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccc------------
Confidence 3556899999888773 3467899999999887733323333333443332211110000
Q ss_pred eeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCC-
Q psy3001 291 VLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKT- 368 (602)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p- 368 (602)
..... .....-.........+.++.+..+++..+ ......+|| |||||||+||++|..+|
T Consensus 338 ------------~~~~~----~~~~~i~~~i~~ei~~rl~~L~~vGL~~l~l~r~~~tLS--GGe~QRV~LA~aL~~~p~ 399 (842)
T 2vf7_A 338 ------------RVKNR----PEQAIALQRMAADLVKRLDVLLHLGLGYLGLDRSTPTLS--PGELQRLRLATQLYSNLF 399 (842)
T ss_dssp ------------SSSSC----SSHHHHHHHHHHHHHHHHHHHHHTTCTTSBTTCBGGGSC--HHHHHHHHHHHHTTTCCC
T ss_pred ------------hhhcc----hhhHHHHHHHHHHHHHHHHHHHhCCCCcCCccCCcCcCC--HHHHHHHHHHHHHhhCCC
Confidence 00000 00000001111222233344556666543 455666777 69999999999999999
Q ss_pred -CeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeecccccccCCeEEEE------eCceEEeecChhHHhhcchh
Q psy3001 369 -KILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKAS 440 (602)
Q Consensus 369 -~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~ 440 (602)
++|||||||++||+...+++.+.++.+.. |.|||+|+||++.+..||+|++| ++|+++..|+++++.+.+..
T Consensus 400 ~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~ 479 (842)
T 2vf7_A 400 GVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHVPES 479 (842)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGCTTC
T ss_pred CeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhchHH
Confidence 59999999999999999999999988754 79999999999988779999999 79999999999998765322
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHhccc---ccccceeeEEecceeEEEECCCCCChHHHHHH-HHhcc
Q psy3001 441 IFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLSKET---LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLA-LFRII 516 (602)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~-L~g~~ 516 (602)
............ ......... ..+.... -.+++++|+|++||++||+|+||||||||+++ |+|++
T Consensus 480 ~~~~~l~~~~~~--~~~~~~~~~---------~~L~v~~l~~~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 480 QTGQYLFADRHT--EPHTPREPA---------GWLELNGVTRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp HHHHHHHTCCCC--CCCCCCCCS---------CEEEEEEEEETTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred HHHHHhhhcccc--cccccCCCC---------ceEEEEeeeecccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 211111100000 000000000 0011111 13567999999999999999999999999997 77664
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-29 Score=276.88 Aligned_cols=191 Identities=20% Similarity=0.305 Sum_probs=141.0
Q ss_pred EEEeeeEEEEecC----CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREG----LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~----~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..+++++|+..+| +|+++|+|+||||||||+++|+|+++|++|+. +. +..++++||++...+
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~~~- 426 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAPKF- 426 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCCCC-
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccccC-
Confidence 4577889988765 37899999999999999999999999999972 11 235899999632111
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
.. ++.+++.......... ..... +.++.++...........|| |||
T Consensus 427 ----------------------~~------tv~e~~~~~~~~~~~~-~~~~~---~~l~~l~l~~~~~~~~~~LS--GGq 472 (608)
T 3j16_B 427 ----------------------PG------TVRQLFFKKIRGQFLN-PQFQT---DVVKPLRIDDIIDQEVQHLS--GGE 472 (608)
T ss_dssp ----------------------CS------BHHHHHHHHCSSTTTS-HHHHH---HTHHHHTSTTTSSSBSSSCC--HHH
T ss_pred ----------------------Cc------cHHHHHHHHhhccccc-HHHHH---HHHHHcCChhhhcCChhhCC--HHH
Confidence 00 0000000000000000 00111 22234444455666677788 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC--ceEEeec
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK--GLVVEFD 429 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~--G~i~~~g 429 (602)
||||+|||||+.+|++|||||||++||+.+...+.+.|+++. .++|||+|||+++++.. ||||++|++ |+++..|
T Consensus 473 kQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g 552 (608)
T 3j16_B 473 LQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHAR 552 (608)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecC
Confidence 999999999999999999999999999999999999998863 47999999999999988 999999996 8999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
++++++..
T Consensus 553 ~p~~~~~~ 560 (608)
T 3j16_B 553 APESLLTG 560 (608)
T ss_dssp CCEEHHHH
T ss_pred ChHHHhhh
Confidence 99988764
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.96 E-value=9.4e-30 Score=289.06 Aligned_cols=171 Identities=23% Similarity=0.249 Sum_probs=122.3
Q ss_pred HHHHhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCCC--eEEEecccccCChhHHHHHHHHHHHhc-cccEEEEe
Q psy3001 329 LKRLESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKTK--ILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTI 404 (602)
Q Consensus 329 ~~~l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~i 404 (602)
.+.+..+++... ......+|| |||||||+|||||.++|+ +|||||||++||+....++.+.|+++. .|.|||+|
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LS--GGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLS--GGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCC--HHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHcCCccccccCCcccCC--HHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 344445555433 345566777 699999999999999887 999999999999999999999999875 47999999
Q ss_pred eecccccccCCeEEEE------eCceEEeecChhHHhhcchhHHH-HHHHhh-hhhHHHHHHHhhhhhHHHHHHHHHHHh
Q psy3001 405 AHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKASIFY-SMAKDA-GLAWLAVRLETVGNLITFSAALLAVLS 476 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (602)
+||++.+..||+|++| ++|+++..|+++++++....... ...... .......+ ...... ..+..
T Consensus 523 tHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-------l~v~~ 594 (916)
T 3pih_A 523 EHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEYLSGKRKITVNKTR-RLPYAS-------LKIKG 594 (916)
T ss_dssp CCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSCTTCHHHHHHHSSSCCCCCSSC-CCCSSE-------EEEEE
T ss_pred eCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCchhcchhhhhhccccccccccc-ccccce-------EEEee
Confidence 9999998889999999 89999999999998875432111 111100 00000000 000000 00000
Q ss_pred cccccccceeeEEecceeEEEECCCCCChHHHH
Q psy3001 477 KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLT 509 (602)
Q Consensus 477 ~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl 509 (602)
...-.++++||+|+.|+++||+|+||||||||+
T Consensus 595 ~~~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 595 VRHNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp ECSTTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred eccccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 111235679999999999999999999999997
No 60
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.95 E-value=6.9e-28 Score=273.83 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=74.0
Q ss_pred ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe
Q psy3001 343 HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
.....|| ||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|||+|||+++++.. ||++++|+
T Consensus 897 ~~~~~LS--GGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~ 972 (986)
T 2iw3_A 897 SRIRGLS--GGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVK 972 (986)
T ss_dssp SCGGGCC--HHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCB
T ss_pred CCccccC--HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 3445677 69999999999999999999999999999999999999998765 5699999999999987 99999999
Q ss_pred CceEEeecC
Q psy3001 422 KGLVVEFDS 430 (602)
Q Consensus 422 ~G~i~~~g~ 430 (602)
+|+++..|+
T Consensus 973 ~G~Iv~~G~ 981 (986)
T 2iw3_A 973 DGRMTPSGH 981 (986)
T ss_dssp TTBCCC---
T ss_pred CCEEEEeCC
Confidence 999987664
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.95 E-value=2.5e-28 Score=275.07 Aligned_cols=172 Identities=20% Similarity=0.275 Sum_probs=124.5
Q ss_pred HHHhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEee
Q psy3001 330 KRLESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIA 405 (602)
Q Consensus 330 ~~l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it 405 (602)
+.+..+++..+ ......+|| |||||||+||++|..+| ++|||||||++||+...+++.+.|+++. .|.|||+|+
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLS--GGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVe 563 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLS--GGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 563 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCC--HHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHhhhCCCCccccCCccccCC--HHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 33445565543 455666777 69999999999999985 9999999999999999999999999875 479999999
Q ss_pred ecccccccCCeEEEE------eCceEEeecChhHHhhcchhHHHH-HHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHhc-
Q psy3001 406 HRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKASIFYS-MAKDAGLAWLAVRLETVGNLITFSAALLAVLSK- 477 (602)
Q Consensus 406 H~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 477 (602)
||++++..||+|++| ++|+++..|+++++.+.+...... +........ +........ ..+..
T Consensus 564 Hdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~~~slt~~~l~g~~~~~~-~~~~~~~~~---------~~L~v~ 633 (972)
T 2r6f_A 564 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPI-PAERRRPDG---------RWLEVV 633 (972)
T ss_dssp CCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTCTTCTTHHHHHTSSCCCC-CSSCCCCCS---------CEEEEE
T ss_pred cCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhhhHHHHHHHhcCCccccC-ccccccccc---------eEEEEe
Confidence 999998789999999 799999999999987643222111 111000000 000000000 00100
Q ss_pred --ccccccceeeEEecceeEEEECCCCCChHHHHHHHH
Q psy3001 478 --ETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 478 --~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~ 513 (602)
..-.++++||+|+.||++||+|+||||||||+++|+
T Consensus 634 ~l~~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 634 GAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EECSSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cCcccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 011356799999999999999999999999999854
No 62
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.94 E-value=5.9e-27 Score=263.61 Aligned_cols=96 Identities=26% Similarity=0.377 Sum_probs=85.6
Q ss_pred ccccCCcCCCChhhHHHHHHHHHHhhCC---CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCe
Q psy3001 341 YSHFGETVTGNVGQRQLICLARALLRKT---KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDR 416 (602)
Q Consensus 341 ~~~~~~~lsgs~Gq~Qrl~lAral~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~ 416 (602)
......+|| |||||||+|||||+.+| ++|||||||++||+.+...+.+.++++. +++|||+|||+++.+..|||
T Consensus 537 ~~~~~~~LS--gG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ 614 (670)
T 3ux8_A 537 LGQPATTLS--GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADY 614 (670)
T ss_dssp TTCCGGGCC--HHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred ccCCchhCC--HHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCE
Confidence 345566778 69999999999999987 5999999999999999999999998875 47999999999998877999
Q ss_pred EEEE------eCceEEeecChhHHhhcc
Q psy3001 417 VLVL------DKGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 417 i~~l------~~G~i~~~g~~~~l~~~~ 438 (602)
|++| ++|++++.|+++++.+..
T Consensus 615 i~~l~~~~g~~~G~i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 615 IIDLGPEGGDRGGQIVAVGTPEEVAEVK 642 (670)
T ss_dssp EEEEESSSGGGCCEEEEEECHHHHHTCT
T ss_pred EEEecCCcCCCCCEEEEecCHHHHHhCC
Confidence 9999 899999999999987653
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.94 E-value=1.8e-27 Score=269.02 Aligned_cols=171 Identities=20% Similarity=0.246 Sum_probs=122.7
Q ss_pred HhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhC--CCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeec
Q psy3001 332 LESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRK--TKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHR 407 (602)
Q Consensus 332 l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~--p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~ 407 (602)
+..+++..+ ......+|| |||||||+||++|..+ |++|||||||++||+...+++.+.|+++. .|.|||+|+||
T Consensus 505 L~~vGL~~l~l~r~~~tLS--GGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHd 582 (993)
T 2ygr_A 505 LLDVGLEYLSLSRAAATLS--GGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHD 582 (993)
T ss_dssp HHHHTGGGSCTTCBGGGCC--HHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred HhhCCCCccccCCCcccCC--HHHHHHHHHHHHHhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCC
Confidence 444444432 345566777 6999999999999998 58999999999999999999999998875 47999999999
Q ss_pred ccccccCCeEEEE------eCceEEeecChhHHhhcchhHHHH-HHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHhcc--
Q psy3001 408 LNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKASIFYS-MAKDAGLAWLAVRLETVGNLITFSAALLAVLSKE-- 478 (602)
Q Consensus 408 l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 478 (602)
++++..||+|++| ++|+++..|+++++.+.+...... +........ +......... ..+...
T Consensus 583 l~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~~~~lt~~~l~g~~~~~~-~~~~~~~~~~--------~~L~v~~l 653 (993)
T 2ygr_A 583 EDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITGAYLSGRESIEI-PAIRRSVDPR--------RQLTVVGA 653 (993)
T ss_dssp HHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHCTTCHHHHHHHTSSCCCC-CSSCCCCCSS--------SEEEEEEE
T ss_pred HHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhhhHHHHHHHhccCccccC-ccccccCCCC--------ceEEEecC
Confidence 9998779999999 799999999999987753322211 111000000 0000000000 001000
Q ss_pred -cccccceeeEEecceeEEEECCCCCChHHHHHHHH
Q psy3001 479 -TLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 479 -~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~ 513 (602)
.-.++++||+|+.|+++||+|+||||||||+++|+
T Consensus 654 ~~~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 654 REHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp CSTTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTH
T ss_pred ccccccCceEEECCCCEEEEEcCCCCCHHHHHHHHH
Confidence 11356799999999999999999999999999853
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.93 E-value=4.4e-26 Score=242.79 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=73.0
Q ss_pred ChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEE----eCce
Q psy3001 351 NVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL----DKGL 424 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l----~~G~ 424 (602)
|||||||++|||+|+.+| ++|||||||++||+.+..++.+.|+++.+++|||+|||+++.+..||++++| ++|+
T Consensus 297 SgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G~ 376 (415)
T 4aby_A 297 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDGR 376 (415)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETTE
T ss_pred CHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCCc
Confidence 479999999999999999 9999999999999999999999999987789999999999887669999999 9999
Q ss_pred EEee
Q psy3001 425 VVEF 428 (602)
Q Consensus 425 i~~~ 428 (602)
++..
T Consensus 377 ~~~~ 380 (415)
T 4aby_A 377 TVSH 380 (415)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8754
No 65
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.93 E-value=1e-25 Score=255.99 Aligned_cols=109 Identities=27% Similarity=0.381 Sum_probs=92.5
Q ss_pred HHHHHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhhCC---CeEEEecccccCChhHHHHHHHHHHHhc-cccEEE
Q psy3001 328 QLKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRKT---KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVL 402 (602)
Q Consensus 328 ~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi 402 (602)
..+.+..+++.. ..+....+|| |||||||+|||||+++| ++|||||||++||+.+.+.+.+.|+++. +|.|||
T Consensus 785 ~~~~L~~vGL~~~~lgq~~~~LS--GGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 785 TLQVLHDVGLGYVKLGQPATTLS--GGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHTTGGGSBTTCCSTTCC--HHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCchhhccCCccCCC--HHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 334444555432 2355666788 69999999999999875 7999999999999999999999998874 479999
Q ss_pred EeeecccccccCCeEEEE------eCceEEeecChhHHhhcc
Q psy3001 403 TIAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 438 (602)
+|+|+++.+..||+|++| ++|+|++.|+++++++.+
T Consensus 863 vI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~ 904 (916)
T 3pih_A 863 VIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP 904 (916)
T ss_dssp EECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred EEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence 999999999889999999 899999999999998764
No 66
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.93 E-value=2.4e-26 Score=231.72 Aligned_cols=121 Identities=31% Similarity=0.469 Sum_probs=114.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..++..++|++|+||||+|.+|++||++|+.
T Consensus 70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~ 149 (306)
T 3nh6_A 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIR 149 (306)
T ss_dssp EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHH
T ss_pred eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ..++++++++++.+++.+++.++|.||+|.++++|.+|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~L 191 (306)
T 3nh6_A 150 YGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKL 191 (306)
T ss_dssp TTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCC
T ss_pred hhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCC
Confidence 654 45788999999999999999999999999999999886
No 67
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.92 E-value=6.9e-26 Score=255.40 Aligned_cols=109 Identities=25% Similarity=0.332 Sum_probs=91.8
Q ss_pred HHHHHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhhC---CCeEEEecccccCChhHHHHHHHHHHHhc-cccEEE
Q psy3001 328 QLKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRK---TKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVL 402 (602)
Q Consensus 328 ~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~~---p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi 402 (602)
..+.++.+++.. .......+|| |||||||+|||+|+++ |++|||||||++||+.+...+.+.|+++. +|.|||
T Consensus 710 ~~~~L~~~gL~~~~l~~~~~~LS--GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPATELS--GGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCC--HHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCCcccccCCcccCC--HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 344455555544 2355566777 6999999999999996 79999999999999999999999998874 579999
Q ss_pred EeeecccccccCCeEEEE------eCceEEeecChhHHhhcc
Q psy3001 403 TIAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 438 (602)
+|||+++++..||+|++| ++|+++..|+++++....
T Consensus 788 visHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 788 AVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 999999999569999999 799999999999987653
No 68
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.92 E-value=3.1e-25 Score=245.44 Aligned_cols=120 Identities=32% Similarity=0.526 Sum_probs=113.6
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccCC
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDP 562 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~~ 562 (602)
+++||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+++.+.+++|++++||||||.+|++||++|+..
T Consensus 360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~ 439 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAY 439 (582)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhc
Confidence 36999999999999999999999999999999999999999999999999998999999999999999999999999986
Q ss_pred CC--CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 563 VG--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 563 ~~--~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. ..++++++++++.++++++++++|+||||.++++|.+|
T Consensus 440 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~L 481 (582)
T 3b5x_A 440 AAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481 (582)
T ss_pred cCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcC
Confidence 53 46788999999999999999999999999999999886
No 69
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.91 E-value=7.2e-25 Score=247.03 Aligned_cols=108 Identities=26% Similarity=0.346 Sum_probs=91.9
Q ss_pred HHHHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhhCC---CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEE
Q psy3001 329 LKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRKT---KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLT 403 (602)
Q Consensus 329 ~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~ 403 (602)
.+.++.+++.. .......+|| |||||||+|||||+++| ++|||||||++||+.+...+.+.|+++. +|.|||+
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LS--GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLS--GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCC--HHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCcccccCchhhCC--HHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34455555554 4455666777 69999999999999875 9999999999999999999999998874 4799999
Q ss_pred eeecccccccCCeEEEE------eCceEEeecChhHHhhcc
Q psy3001 404 IAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 438 (602)
|||+++.+..||+|++| ++|+++..|+++++....
T Consensus 904 isHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~ 944 (972)
T 2r6f_A 904 IEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVK 944 (972)
T ss_dssp ECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTCT
T ss_pred EcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCc
Confidence 99999998679999999 789999999999987653
No 70
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.91 E-value=2.6e-24 Score=243.47 Aligned_cols=107 Identities=26% Similarity=0.339 Sum_probs=90.3
Q ss_pred HHHHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhhCC---CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEE
Q psy3001 329 LKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRKT---KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLT 403 (602)
Q Consensus 329 ~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~ 403 (602)
.+.++.+++.. .......+|| |||||||+|||+|+++| ++|||||||++||+.+...+.+.|+++. +|.|||+
T Consensus 844 ~~~L~~lgL~~~~l~~~~~~LS--GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 921 (993)
T 2ygr_A 844 LRTLVDVGLGYVRLGQPAPTLS--GGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIV 921 (993)
T ss_dssp HHHHHHTTGGGSBTTCCGGGSC--HHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCcccccCccccCC--HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34444555443 3455566777 69999999999999875 9999999999999999999999998874 4799999
Q ss_pred eeecccccccCCeEEEE------eCceEEeecChhHHhhc
Q psy3001 404 IAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~ 437 (602)
|||+++.+..||+|++| ++|+++..|+++++...
T Consensus 922 isHdl~~i~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~~ 961 (993)
T 2ygr_A 922 IEHNLDVIKTSDWIIDLGPEGGAGGGTVVAQGTPEDVAAV 961 (993)
T ss_dssp ECCCHHHHTTCSEEEEEESSSTTSCSEEEEEECHHHHHHC
T ss_pred EcCCHHHHHhCCEEEEECCCcCCCCCEEEEecCHHHHHhC
Confidence 99999998669999999 68999999999998765
No 71
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.7e-25 Score=238.29 Aligned_cols=184 Identities=11% Similarity=0.066 Sum_probs=126.2
Q ss_pred EEEeeeEEEE-------ecCCceEEEEeccCCChhHHHHHHhcccCCCCc-e-EEECCeecCCCChHHHhhccceecccc
Q psy3001 199 VEFKDYKVRY-------REGLELVGIVGRTGAGKSSLTLALFRIIEPADG-T-IIIDGVDIRTLGLHTLRSRLTIIPQVL 269 (602)
Q Consensus 199 i~~~~vs~~~-------~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G-~-I~i~g~~~~~~~~~~~~~~i~~v~Q~~ 269 (602)
++++|++++| .+| ++++|+|+||||||||+|+|+|++.|++| + |.+||. .++.++++||++
T Consensus 119 i~~~nl~~~y~~vsl~i~~G-e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~i~~vpq~~ 188 (460)
T 2npi_A 119 KYIYNLHFMLEKIRMSNFEG-PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQPIFTVPGCI 188 (460)
T ss_dssp HHHHHHHHHHHHHHHHSSSC-CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSCSSSCSSCC
T ss_pred hhhhhhhehhhcCceEeCCC-CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCCeeeeccch
Confidence 4555555554 445 99999999999999999999999999999 9 999982 367899999973
Q ss_pred hhhhhhccCCceeEeeec--ccc-eeeecc--ccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCccccc
Q psy3001 270 ATIFVICYSTPVFIFVIV--PVS-VLYFFI--QVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHF 344 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~--~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (602)
. ++.... ... .++... .+. ...+.+. +.+..++......
T Consensus 189 ~-----------l~~~~~~~tv~eni~~~~~~~~~-~~~~~~~----------------------~ll~~~gl~~~~~-- 232 (460)
T 2npi_A 189 S-----------ATPISDILDAQLPTWGQSLTSGA-TLLHNKQ----------------------PMVKNFGLERINE-- 232 (460)
T ss_dssp E-----------EEECCSCCCTTCTTCSCBCBSSC-CSSCCBC----------------------CEECCCCSSSGGG--
T ss_pred h-----------hcccccccchhhhhcccccccCc-chHHHHH----------------------HHHHHhCCCcccc--
Confidence 2 111000 000 000000 000 0000000 0001111211111
Q ss_pred CCcCCCChhhHHHHHHHHH--HhhCCCe----EEEec-ccccCChhHHHHHHHHHHHhccccEEEEeeeccc------cc
Q psy3001 345 GETVTGNVGQRQLICLARA--LLRKTKI----LILDE-ATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN------TI 411 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAra--l~~~p~i----liLDE-pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~------~i 411 (602)
...+| ||||||+++||| |+.+|++ ||||| ||++||+. ...+.+.+++. +.|+|+|+|+.. ++
T Consensus 233 ~~~LS--gGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~ 307 (460)
T 2npi_A 233 NKDLY--LECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVK 307 (460)
T ss_dssp CHHHH--HHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHH
T ss_pred hhhhh--HHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHH
Confidence 34556 699999999999 9999999 99999 99999999 66666666554 679999999988 55
Q ss_pred cc-CCe-----EEEEe-CceEEeecChhHH
Q psy3001 412 ID-SDR-----VLVLD-KGLVVEFDSPSVL 434 (602)
Q Consensus 412 ~~-~d~-----i~~l~-~G~i~~~g~~~~l 434 (602)
.. ||+ |++|+ +|+++ .++++++
T Consensus 308 ~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 308 KTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred HHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 56 999 99999 99999 8887765
No 72
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.90 E-value=3.5e-24 Score=237.04 Aligned_cols=121 Identities=29% Similarity=0.465 Sum_probs=114.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+||||||||||+++|+|+++|++|+|.+||+|++..+.+++|++++||||||.+|++||++|+.
T Consensus 359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~ 438 (582)
T 3b60_A 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA 438 (582)
T ss_dssp EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHH
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC--CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~--~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ..++++++++++.++++++++++|+||+|.++++|.+|
T Consensus 439 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L 481 (582)
T 3b60_A 439 YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481 (582)
T ss_dssp TTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred ccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence 643 46788999999999999999999999999999999886
No 73
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.89 E-value=1.3e-23 Score=206.22 Aligned_cols=122 Identities=33% Similarity=0.575 Sum_probs=111.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+|++++||||+|.+|..||++|+
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl 96 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL 96 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHT
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHH
Confidence 35579999999999999999999999999999999999999999999999887777788899999999999999999999
Q ss_pred CCC--CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPV--GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~--~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ...++++++++++.+++.++.+++|.++++.+++.+.+|
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L 140 (243)
T 1mv5_A 97 TYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140 (243)
T ss_dssp TSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC
T ss_pred hhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcC
Confidence 754 335677899999999999999999999999998887765
No 74
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=4.1e-24 Score=236.19 Aligned_cols=122 Identities=35% Similarity=0.609 Sum_probs=115.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++++||++++||++||+||||||||||+++|+|+++|++|+|.+||+|++..+.+++|++++||||||++|++||++|+
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni 437 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL 437 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHH
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.... ..++++++++++.++++++++++|+|++|.++++|.+|
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~L 480 (587)
T 3qf4_A 438 KWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNF 480 (587)
T ss_dssp TTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSS
T ss_pred hccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCc
Confidence 8654 46889999999999999999999999999999999886
No 75
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.89 E-value=3.5e-24 Score=236.66 Aligned_cols=122 Identities=32% Similarity=0.488 Sum_probs=115.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++++||++++||++||+||||||||||+++|+|+++|++|+|.+||+|++..+.+++|++++||||||++|++||++|+
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 435 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI 435 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHH
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... +..++++++++++.++++++++++|+|++|.++++|.+|
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 436 LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp GGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred hcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcC
Confidence 754 346788999999999999999999999999999999886
No 76
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.89 E-value=7e-24 Score=235.21 Aligned_cols=121 Identities=34% Similarity=0.517 Sum_probs=113.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+||||||||||+++|+|+++|++|+|.+||+|++..+.+++|++++||||+|.+|++||++|+.
T Consensus 360 l~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~ 439 (595)
T 2yl4_A 360 FQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIA 439 (595)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHH
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCC----CcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGE----SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~----~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.... .++++++++++.++++++++++|+++||.++++|.+|
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~L 484 (595)
T 2yl4_A 440 YGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 484 (595)
T ss_dssp TTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCC
T ss_pred hcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcC
Confidence 4322 5788999999999999999999999999999999886
No 77
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.89 E-value=2.5e-24 Score=200.09 Aligned_cols=67 Identities=7% Similarity=0.052 Sum_probs=57.7
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChh----------------HHHHHHHHHHHhc-cccEEEEeeeccccccc
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLE----------------TDDLIQSTIRSEF-AHCTVLTIAHRLNTIID 413 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~----------------~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~ 413 (602)
|+|||||++||||+..+|++|+|||||++||+. ....+.+.++++. +|.|+|+|||+++++..
T Consensus 85 s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 85 ESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 479999999999999999999999999999999 4477777776653 48999999999999876
Q ss_pred CCeE
Q psy3001 414 SDRV 417 (602)
Q Consensus 414 ~d~i 417 (602)
++++
T Consensus 165 ~~~~ 168 (171)
T 4gp7_A 165 VVFE 168 (171)
T ss_dssp EEEE
T ss_pred hhhc
Confidence 6554
No 78
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.89 E-value=1.8e-23 Score=205.56 Aligned_cols=122 Identities=32% Similarity=0.450 Sum_probs=111.4
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+|++|+||||+|.+|..||++|+
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 103 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI 103 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHH
Confidence 35579999999999999999999999999999999999999999999999888877888899999999999999999999
Q ss_pred CCCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.... ..++++++++++.+++.++.+++|.+|++.+++.+.+|
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L 146 (247)
T 2ff7_A 104 SLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGL 146 (247)
T ss_dssp TTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCC
T ss_pred hccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCC
Confidence 7543 34677899999999999999999999999999888775
No 79
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.89 E-value=7.3e-24 Score=231.71 Aligned_cols=260 Identities=13% Similarity=0.070 Sum_probs=155.4
Q ss_pred cEEEeeeEE-EEecCCceEEEEeccCCChhHHHHH--HhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKV-RYREGLELVGIVGRTGAGKSSLTLA--LFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~-~~~~~~e~~~lvG~sGsGKSTL~~l--l~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++++++ .+++| ++++|+|+||||||||+++ ++|+++|++|.|+++|.+. .......++.+++++|++...
T Consensus 25 ~~~Ld~i~~G~i~~G-e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CTTHHHHTTSSEETT-SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred chhHHHhcCCCCCCC-eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 346899999 89998 9999999999999999999 7899999999999999873 223344567899999975421
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+.++.... .. .....+. .... +=.
T Consensus 101 -----~~l~~~~~---------~~----~~~~~~~-----l~~~---------------------------------~l~ 124 (525)
T 1tf7_A 101 -----GKLFILDA---------SP----DPEGQEV-----VGGF---------------------------------DLS 124 (525)
T ss_dssp -----TSEEEEEC---------CC----CSSCCSC-----CSSH---------------------------------HHH
T ss_pred -----CcEEEEec---------Cc----ccchhhh-----hccc---------------------------------CHH
Confidence 00110000 00 0000000 0000 001
Q ss_pred HHHHHHHHHHh-hCCCeEEEeccccc-----CChhHHHHHHHHHHHhc-cccEEEEeeeccccc---------cc-CCeE
Q psy3001 355 RQLICLARALL-RKTKILILDEATAA-----IDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTI---------ID-SDRV 417 (602)
Q Consensus 355 ~Qrl~lAral~-~~p~iliLDEpts~-----LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i---------~~-~d~i 417 (602)
.+.-.++++|. .+|++++|||||+. +|+...+.+.+.++.+. .|+|+|+++|+++.+ .. ||+|
T Consensus 125 ~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~v 204 (525)
T 1tf7_A 125 ALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNV 204 (525)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEE
T ss_pred HHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEE
Confidence 12223333442 46889999999985 58888899999888764 479999999999985 44 9999
Q ss_pred EEEeC----ceEEeecChhHHhhcc--hhHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHhcccccc------cce
Q psy3001 418 LVLDK----GLVVEFDSPSVLMKNK--ASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLSKETLNA------GLV 485 (602)
Q Consensus 418 ~~l~~----G~i~~~g~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 485 (602)
++|++ |+....-......... ...+.......+....+ ....... .......+.. ..+
T Consensus 205 i~L~~~~~~G~~~r~l~~~k~r~~~~~~~~~~~~i~~~gi~v~p--~~~~~~~--------~~~~~~~l~~g~~~ld~vL 274 (525)
T 1tf7_A 205 VILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFP--LGAMRLT--------QRSSNVRVSSGVVRLDEMC 274 (525)
T ss_dssp EEEEEECSTTCCEEEEEEEEETTSCCCCSEEEEEEETTEEEECC--TTTCCSC--------CCCCCCEECCSCHHHHHHT
T ss_pred EEEEEEccCCceeEEEEEEECCCCCCCCceEEEEEcCCCEEEEe--ccccccc--------cccccceeecChHHHHHHh
Confidence 99998 4332111100000000 00000000000000000 0000000 0000011110 013
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCce--EEECCe
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGT--IIIDGV 528 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~--I~i~g~ 528 (602)
+..+.+|++++|+|+||||||||++.++|..+++ |+ +.+.++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~e 318 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYE 318 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESS
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEe
Confidence 5689999999999999999999999999999875 65 455543
No 80
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.89 E-value=3.3e-24 Score=237.63 Aligned_cols=121 Identities=33% Similarity=0.572 Sum_probs=114.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+||||||||||+++|+|+++|++|+|.+||+|++..+.+++|++++||||||.+|++||++|+.
T Consensus 371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~ 450 (598)
T 3qf4_B 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLK 450 (598)
T ss_dssp CCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHH
T ss_pred ccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ..++++++++++.++++++++++|+|++|.++++|.+|
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 451 YGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp SSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTS
T ss_pred cCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCC
Confidence 653 46788999999999999999999999999999999886
No 81
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.87 E-value=3.7e-22 Score=204.67 Aligned_cols=79 Identities=16% Similarity=0.317 Sum_probs=68.9
Q ss_pred CcCCCChhhHHHHHHHHHHh----hCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeE--EE
Q psy3001 346 ETVTGNVGQRQLICLARALL----RKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRV--LV 419 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i--~~ 419 (602)
..+| +|||||++|||||+ .+|++|||||||++||+.....+.+.+++..++.|+|++||+.+.+..||++ ++
T Consensus 218 ~~lS--~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~ 295 (322)
T 1e69_A 218 SLLS--GGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVT 295 (322)
T ss_dssp GGSC--HHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred hhCC--HHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEE
Confidence 4556 69999999999997 6899999999999999999999999998886678999999997765569987 88
Q ss_pred EeCceEE
Q psy3001 420 LDKGLVV 426 (602)
Q Consensus 420 l~~G~i~ 426 (602)
|.+|...
T Consensus 296 ~~~g~s~ 302 (322)
T 1e69_A 296 MVNGVSA 302 (322)
T ss_dssp ESSSCEE
T ss_pred EeCCEEE
Confidence 8888653
No 82
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.87 E-value=2.1e-24 Score=206.17 Aligned_cols=144 Identities=13% Similarity=0.097 Sum_probs=91.2
Q ss_pred ecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecc
Q psy3001 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVP 288 (602)
Q Consensus 209 ~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~ 288 (602)
.+| ++++|+||||||||||+++|+|+ +|++|+|.. .++. .+...+++.++|+||++... +.
T Consensus 20 ~~G-e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~-~~~~~~~~~ig~v~q~~~en---------l~----- 80 (208)
T 3b85_A 20 DTN-TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILT-RPAVEAGEKLGFLPGTLNEK---------ID----- 80 (208)
T ss_dssp HHC-SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEE-ECSCCTTCCCCSSCC---------------C-----
T ss_pred cCC-CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEec-CCchhhhcceEEecCCHHHH---------HH-----
Confidence 345 99999999999999999999999 999999943 2222 12223577899999973100 00
Q ss_pred cceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCC
Q psy3001 289 VSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKT 368 (602)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p 368 (602)
.+..+....+ . .... ..+..+.++ . . .|||||++|||||+.+|
T Consensus 81 ------------~~~~~~~~~~-~-~~~~-------~~~~~~~l~---------~-----g--lGq~qrv~lAraL~~~p 123 (208)
T 3b85_A 81 ------------PYLRPLHDAL-R-DMVE-------PEVIPKLME---------A-----G--IVEVAPLAYMRGRTLND 123 (208)
T ss_dssp ------------TTTHHHHHHH-T-TTSC-------TTHHHHHHH---------T-----T--SEEEEEGGGGTTCCBCS
T ss_pred ------------HHHHHHHHHH-H-Hhcc-------HHHHHHHHH---------h-----C--CchHHHHHHHHHHhcCC
Confidence 0000000000 0 0000 000111111 1 1 29999999999999999
Q ss_pred CeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc
Q psy3001 369 KILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID 413 (602)
Q Consensus 369 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~ 413 (602)
++|||||||++ +...+.+.|+++.+++|+| +||+++.+..
T Consensus 124 ~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 124 AFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp EEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred CEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 99999999999 7888888888874578999 9999987643
No 83
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.87 E-value=1.2e-22 Score=211.16 Aligned_cols=122 Identities=37% Similarity=0.654 Sum_probs=114.3
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLN 559 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~n 559 (602)
..++++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...++..+|++++||||+|.+|..||++|
T Consensus 35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~en 113 (390)
T 3gd7_A 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN 113 (390)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHH
T ss_pred EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHH
Confidence 34567999999999999999999999999999999998 89999999999999999889999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 560 LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 560 l~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+.+.....+++++++++.++|.++.++.|..+++.++++|.+|
T Consensus 114 l~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~L 156 (390)
T 3gd7_A 114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVL 156 (390)
T ss_dssp HCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTS
T ss_pred hhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccC
Confidence 9866667888999999999999999999999999999999876
No 84
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.86 E-value=7.3e-25 Score=220.12 Aligned_cols=206 Identities=14% Similarity=0.163 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCCCC-CCcEEEeeeEEEE------------ecCCce
Q psy3001 148 TQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPE-KGEVEFKDYKVRY------------REGLEL 214 (602)
Q Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~vs~~~------------~~~~e~ 214 (602)
..++..+..++..++.+..+.+|+.++++.+++... . ...|+. .+.++++||+|+| ++| ++
T Consensus 55 ~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~--~---~~~~~~~~~~i~~~~vs~~y~~~vL~~vsl~i~~G-e~ 128 (305)
T 2v9p_A 55 AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT--G---EGSWKSILTFFNYQNIELITFINALKLWLKGIPKK-NC 128 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC--S---SCCTHHHHHHHHHTTCCHHHHHHHHHHHHHTCTTC-SE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC--C---CCcccccCCeEEEEEEEEEcChhhhccceEEecCC-CE
Confidence 467888888999999999999999999875443211 0 011111 1235566666555 455 99
Q ss_pred EEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeee
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYF 294 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (602)
++|+||||||||||+++|+|++ +|+|. ++++|++ .+|
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~---~G~I~------------------~~v~q~~-----------~lf----------- 165 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFL---GGSVL------------------SFANHKS-----------HFW----------- 165 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH---TCEEE------------------CGGGTTS-----------GGG-----------
T ss_pred EEEECCCCCcHHHHHHHHhhhc---CceEE------------------EEecCcc-----------ccc-----------
Confidence 9999999999999999999999 89984 3455652 211
Q ss_pred ccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEe
Q psy3001 295 FIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILD 374 (602)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLD 374 (602)
..++.. +++.... .... ...+.++. .... .+. +..+| |||||| ||||+++|+|||
T Consensus 166 --~~ti~~-----~ni~~~~--~~~~---~~~~~i~~---~L~~-gld--g~~LS--gGqkQR---ARAll~~p~iLl-- 220 (305)
T 2v9p_A 166 --LASLAD-----TRAALVD--DATH---ACWRYFDT---YLRN-ALD--GYPVS--IDRKHK---AAVQIKAPPLLV-- 220 (305)
T ss_dssp --GGGGTT-----CSCEEEE--EECH---HHHHHHHH---TTTG-GGG--TCCEE--CCCSSC---CCCEECCCCEEE--
T ss_pred --cccHHH-----HhhccCc--cccH---HHHHHHHH---HhHc-cCC--ccCcC--HHHHHH---HHHHhCCCCEEE--
Confidence 111110 0000000 0000 01111121 1111 111 66777 599999 999999999999
Q ss_pred cccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 375 EATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 375 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
||+||+.++..+.. ++||++.+..||+| +|++|++++.|+++++ ...|..++.
T Consensus 221 --Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~ 273 (305)
T 2v9p_A 221 --TSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWG 273 (305)
T ss_dssp --EESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTT
T ss_pred --ECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHH
Confidence 99999999876641 39999998889999 9999999999999988 445555443
No 85
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.86 E-value=1.8e-21 Score=202.58 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=72.8
Q ss_pred CCcCCCChhhHHHHHHHHHHh------hCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeE
Q psy3001 345 GETVTGNVGQRQLICLARALL------RKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRV 417 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i 417 (602)
..++| ||||||++|||||+ .+|++|||||||++||+.+...+.+.++++. .|+|||+|||+++....||++
T Consensus 277 ~~~LS--gGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLS--GGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp GGGSC--HHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred chhCC--HHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 34566 69999999999999 7999999999999999999999999998875 479999999999986669999
Q ss_pred EEEeCceEEe
Q psy3001 418 LVLDKGLVVE 427 (602)
Q Consensus 418 ~~l~~G~i~~ 427 (602)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999864
No 86
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.86 E-value=2.6e-22 Score=198.78 Aligned_cols=121 Identities=29% Similarity=0.521 Sum_probs=108.1
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+||||||||||+++|+|+++| +|+|.++|+++...+...+|++|+||||+|.+|..||++|+
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 113 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI 113 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHH
Confidence 35579999999999999999999999999999999987 89999999999888777888899999999999999999998
Q ss_pred CCCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.... ...++++.++++.+++.++++.+|.++++.++..+.+|
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L 156 (260)
T 2ghi_A 114 LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156 (260)
T ss_dssp HTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred hccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence 6532 34567899999999999999999999999888877765
No 87
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.85 E-value=5.6e-22 Score=197.47 Aligned_cols=121 Identities=24% Similarity=0.406 Sum_probs=105.1
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+|++|+||||+|.+|..||++|+.
T Consensus 35 l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~ 114 (271)
T 2ixe_A 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIA 114 (271)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHH
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHh
Confidence 45799999999999999999999999999999999999999999999998877777888999999999999999999996
Q ss_pred CCCC-CcH-HHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGE-SSD-EAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~-~~~-~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.... ..+ +++.++++..++.++++.+|.++++.++..+.+|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~L 157 (271)
T 2ixe_A 115 YGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQL 157 (271)
T ss_dssp TTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTS
T ss_pred hhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCC
Confidence 5322 233 6677888888999999999888888777666554
No 88
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.85 E-value=3.4e-22 Score=186.41 Aligned_cols=147 Identities=13% Similarity=0.151 Sum_probs=100.0
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceee
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLY 293 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (602)
.++|+||||||||||+++|+|++. |.++|.+.........++.+++++|++.. ...++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~-------~~~~~---------- 59 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEG-------KKKIF---------- 59 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTC-------CEEEE----------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcH-------HHHHH----------
Confidence 489999999999999999999985 45666554333211456789999986310 00000
Q ss_pred eccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHH-----HhhCC
Q psy3001 294 FFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARA-----LLRKT 368 (602)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAra-----l~~~p 368 (602)
. . .. . ...+........+| +|||||++|||| ++.+|
T Consensus 60 -------------~-~----~~--~-----------------~~~~~~~~~~~~lS--gG~~qr~~la~aa~~~~l~~~p 100 (178)
T 1ye8_A 60 -------------S-S----KF--F-----------------TSKKLVGSYGVNVQ--YFEELAIPILERAYREAKKDRR 100 (178)
T ss_dssp -------------E-E----TT--C-----------------CCSSEETTEEECHH--HHHHHHHHHHHHHHHHHHHCTT
T ss_pred -------------H-h----hc--C-----------------CccccccccccCcC--HHHHHHHHHHhhccccccccCC
Confidence 0 0 00 0 00012334445566 699999999996 99999
Q ss_pred CeEEEec--ccccCChhHHHHHHHHHHHhccccEEEEeee---ccccccc-CCeEEEEeCceEEe
Q psy3001 369 KILILDE--ATAAIDLETDDLIQSTIRSEFAHCTVLTIAH---RLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 369 ~iliLDE--pts~LD~~~~~~i~~~l~~~~~~~tvi~itH---~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
++++||| ||+++|+...+.+.+.+++ .+.|+|+++| +.+.+.. ||+ .+|++++
T Consensus 101 ~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 101 KVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp CEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 9999999 9999999999999888866 4567888885 6777766 776 4556654
No 89
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.81 E-value=6.5e-22 Score=202.73 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=97.1
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
++++++...+| +.++|+|+||||||||+++|+|+++|++|.|.++|.+..... .+++.++
T Consensus 161 l~~l~~~i~~g-~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~--~~~~~i~----------------- 220 (330)
T 2pt7_A 161 ISAIKDGIAIG-KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK--HHKNYTQ----------------- 220 (330)
T ss_dssp HHHHHHHHHHT-CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--SCSSEEE-----------------
T ss_pred HhhhhhhccCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--cchhEEE-----------------
Confidence 44556666666 899999999999999999999999999999999985311100 0000000
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICL 360 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~l 360 (602)
. .. + +||+||++|
T Consensus 221 ---------------------------------~--------------------------~~-------g-gg~~~r~~l 233 (330)
T 2pt7_A 221 ---------------------------------L--------------------------FF-------G-GNITSADCL 233 (330)
T ss_dssp ---------------------------------E--------------------------EC-------B-TTBCHHHHH
T ss_pred ---------------------------------E--------------------------Ee-------C-CChhHHHHH
Confidence 0 00 0 499999999
Q ss_pred HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccc-cEEEEeeecccccccCCeEEEEeCce
Q psy3001 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIIDSDRVLVLDKGL 424 (602)
Q Consensus 361 Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~l~~i~~~d~i~~l~~G~ 424 (602)
||||..+|++++|||||+. .+.+.++....+ .|+|+++|+.+....|||+++|.+|.
T Consensus 234 a~aL~~~p~ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 234 KSCLRMRPDRIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHTTSCCSEEEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HHHhhhCCCEEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 9999999999999999982 234556665555 58999999999555599999888774
No 90
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.81 E-value=2.1e-20 Score=182.23 Aligned_cols=103 Identities=23% Similarity=0.306 Sum_probs=86.9
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh----hccceEecCCcccccc-c
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQDPVLFSG-T 555 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l----r~~i~~V~Qdp~lf~~-T 555 (602)
.++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+..++ |++++||||+|.+|.. |
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~t 99 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT 99 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCc
Confidence 3567999999999999999999999999999999999999999999999998886553 4469999999999887 9
Q ss_pred hhcccCC----C--CCC----cHHHHHHHHHHcCCCcc
Q psy3001 556 LRLNLDP----V--GES----SDEAIWKALELAHLNTF 583 (602)
Q Consensus 556 v~~nl~~----~--~~~----~~~~i~~al~~~~l~~~ 583 (602)
|++|+.. . ... ..+++.++++.+++.+.
T Consensus 100 v~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 137 (235)
T 3tif_A 100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137 (235)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh
Confidence 9999842 1 111 23458889999999764
No 91
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.81 E-value=3.4e-20 Score=182.00 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=93.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++||++||+||||||||||+++|+|+++|+ |+|.++|+++...+..++|++++||||+|.+|.. ||++|+
T Consensus 16 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 94 (249)
T 2qi9_C 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL 94 (249)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHH
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHH
Confidence 45799999999999999999999999999999999999 9999999999888777888899999999988865 999998
Q ss_pred CCCC--CCcHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG--ESSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~--~~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.... ..+++++.++++.+++.++.++.|..
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 126 (249)
T 2qi9_C 95 TLHQHDKTRTELLNDVAGALALDDKLGRSTNQ 126 (249)
T ss_dssp HTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred HHhhccCCcHHHHHHHHHHcCChhHhcCChhh
Confidence 6432 12377899999999998877665543
No 92
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.81 E-value=3.4e-20 Score=180.16 Aligned_cols=109 Identities=22% Similarity=0.338 Sum_probs=95.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++| +++||||+|.+|+.||++|+
T Consensus 23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~v~q~~~~~~~tv~enl 89 (229)
T 2pze_A 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENI 89 (229)
T ss_dssp SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEEECSSCCCCSBCHHHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEEEecCCcccCCCHHHHh
Confidence 35579999999999999999999999999999999999999999998 49999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.......+....++++.+++.++++++|.+.++.+++.+.+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 131 (229)
T 2pze_A 90 IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 131 (229)
T ss_dssp HTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTS
T ss_pred hccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcC
Confidence 764334455677788899999999999988888888777665
No 93
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.81 E-value=1.5e-20 Score=187.09 Aligned_cols=111 Identities=23% Similarity=0.333 Sum_probs=91.1
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC--CChhhhhccceEecCCc--cccccch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSRLTIIPQDP--VLFSGTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~--~~~~~lr~~i~~V~Qdp--~lf~~Tv 556 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .+..++|++||||||+| ++|..||
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv 102 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASV 102 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcH
Confidence 3557999999999999999999999999999999999999999999999852 23456788999999998 5778899
Q ss_pred hcccCCC---CCC----cHHHHHHHHHHcCCCccccccccCC
Q psy3001 557 RLNLDPV---GES----SDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 557 ~~nl~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
++|+... ... ..+++.++++.++|.++.++.|..|
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (275)
T 3gfo_A 103 YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCL 144 (275)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccC
Confidence 9998521 111 2346889999999988777665543
No 94
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.81 E-value=1.9e-22 Score=195.02 Aligned_cols=177 Identities=10% Similarity=0.025 Sum_probs=108.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccchhhhhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
-.++|+||++.+| ++++|+||||||||||+++|+|++ | |+|.+ |.++....+ ...++.++|++|++..+--...
T Consensus 11 ~~l~~isl~i~~G-~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 11 SSGLVPRGSMNNI-YPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp -----------CC-CCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred ccccCCceecCCC-CEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 4689999999998 999999999999999999999999 5 99999 877654332 2245689999998653221110
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
...+++.. .+..+. .... . ....+.++ .. . .......+| |||+||
T Consensus 86 ~~~~l~~~-------------------~~~~~~---~g~~-~---~~i~~~l~---~~-~---~~il~~~ls--ggq~qR 130 (218)
T 1z6g_A 86 NEDFLEYD-------------------NYANNF---YGTL-K---SEYDKAKE---QN-K---ICLFEMNIN--GVKQLK 130 (218)
T ss_dssp TTCEEEEE-------------------EETTEE---EEEE-H---HHHHHHHH---TT-C---EEEEEECHH--HHHHHT
T ss_pred ccchhhhh-------------------hccccc---CCCc-H---HHHHHHHh---CC-C---cEEEEecHH--HHHHHH
Confidence 11122111 110000 0000 0 01111111 10 0 001113344 799999
Q ss_pred HHH-----HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeC
Q psy3001 358 ICL-----ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 358 l~l-----Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
+++ ||+|+.+|++++|||||+++|.+++..+.+.+....++.| ++| +..+|.|+++++
T Consensus 131 ~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 131 KSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp TCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999 8999999999999999999999999999998887666656 677 455898887754
No 95
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.80 E-value=3.1e-20 Score=190.33 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=92.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh---hhccceEecCCcccccc-ch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~---lr~~i~~V~Qdp~lf~~-Tv 556 (602)
.++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+..+ +|++||||||+|.+|.. ||
T Consensus 43 aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV 122 (366)
T 3tui_C 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 122 (366)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCH
T ss_pred EEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCH
Confidence 356799999999999999999999999999999999999999999999999887654 47789999999998865 99
Q ss_pred hcccCCC----CC---CcHHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPV----GE---SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+... .. ...+++.++|+.++|.++.++.|..
T Consensus 123 ~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~ 163 (366)
T 3tui_C 123 FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 163 (366)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhh
Confidence 9998521 11 1235689999999998876655543
No 96
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.80 E-value=8.2e-20 Score=181.18 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=94.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~nl 560 (602)
++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+.+++++.++|+||++.+ |..||++|+
T Consensus 27 L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 106 (266)
T 4g1u_C 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVI 106 (266)
T ss_dssp EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHH
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999999988888899999999976 567999998
Q ss_pred CCC-----CCCcHHHHHHHHHHcCCCcccccccc
Q psy3001 561 DPV-----GESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 561 ~~~-----~~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
... .....+++.++++.+++.++.++.|.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (266)
T 4g1u_C 107 QMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYR 140 (266)
T ss_dssp HGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGG
T ss_pred HhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcc
Confidence 421 22345679999999999887666554
No 97
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.79 E-value=4.4e-20 Score=182.59 Aligned_cols=109 Identities=21% Similarity=0.317 Sum_probs=90.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC--CCChhhhhccceEecCCcccccc-chhc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQDPVLFSG-TLRL 558 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~--~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~ 558 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++. ......+|++++||||+|.+|.. ||++
T Consensus 40 L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e 119 (263)
T 2olj_A 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLN 119 (263)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHH
Confidence 45799999999999999999999999999999999999999999999985 23345567889999999998876 9999
Q ss_pred ccCCC----CCCc----HHHHHHHHHHcCCCccccccccC
Q psy3001 559 NLDPV----GESS----DEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 559 nl~~~----~~~~----~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
|+... ...+ ++++.++++.++|.++.++.|..
T Consensus 120 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 120 NITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhh
Confidence 98531 1111 35688999999998876665543
No 98
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.79 E-value=8.1e-20 Score=174.96 Aligned_cols=103 Identities=20% Similarity=0.365 Sum_probs=87.7
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+++++||||+|.+|.+ ||++|
T Consensus 24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~q~~~~~~~~tv~en 98 (214)
T 1sgw_A 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDY 98 (214)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSSCCCCTTSBHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEeCCCcCCCCCCHHHH
Confidence 355799999999999999999999999999999999999999999999886 257789999999998876 99999
Q ss_pred cCCC----C-CCcHHHHHHHHHHcCCCcccccccc
Q psy3001 560 LDPV----G-ESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 560 l~~~----~-~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+... . ...++++.++++.+++.++ ++.|.
T Consensus 99 l~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~ 132 (214)
T 1sgw_A 99 LKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLG 132 (214)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGG
T ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChh
Confidence 8521 1 2236779999999999876 55443
No 99
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.79 E-value=4.2e-20 Score=178.88 Aligned_cols=109 Identities=26% Similarity=0.270 Sum_probs=90.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh---hh-ccceEecCCcccccc-ch
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LR-SRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~---lr-~~i~~V~Qdp~lf~~-Tv 556 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+..+ +| ++++||||+|.+|.. ||
T Consensus 20 l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 99 (224)
T 2pcj_A 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTA 99 (224)
T ss_dssp EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCH
Confidence 45799999999999999999999999999999999999999999999998776543 33 679999999988865 99
Q ss_pred hcccCCC----CC---CcHHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPV----GE---SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+... .. ..++++.++++.+++.++.++.|..
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (224)
T 2pcj_A 100 LENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYE 140 (224)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGG
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhh
Confidence 9998521 11 1235689999999998877665543
No 100
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.79 E-value=9.6e-20 Score=179.52 Aligned_cols=108 Identities=20% Similarity=0.330 Sum_probs=91.1
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++++||||+|.+|.. ||++|+
T Consensus 31 l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~enl 109 (256)
T 1vpl_A 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYL 109 (256)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCCCTTSBHHHHH
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEEcCCCCCCCCCcHHHHH
Confidence 457999999999999999999999999999999999999999999999876 445677889999999998876 999998
Q ss_pred CCC----CCCc---HHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPV----GESS---DEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~----~~~~---~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
... .... ++++.++++.++|.++.++.|..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 146 (256)
T 1vpl_A 110 RFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST 146 (256)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGG
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhh
Confidence 531 1111 25688999999999887766543
No 101
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.79 E-value=1.4e-19 Score=185.55 Aligned_cols=111 Identities=26% Similarity=0.318 Sum_probs=91.3
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCC--ChhhhhccceEecCCcccccc-chh
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL--GLHTLRSRLTIIPQDPVLFSG-TLR 557 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~--~~~~lr~~i~~V~Qdp~lf~~-Tv~ 557 (602)
.++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .....+++||||||++.+|.. ||+
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~ 98 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVY 98 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHH
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHH
Confidence 35579999999999999999999999999999999999999999999998432 223446789999999999976 999
Q ss_pred cccCCCCC----C---cHHHHHHHHHHcCCCccccccccCC
Q psy3001 558 LNLDPVGE----S---SDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 558 ~nl~~~~~----~---~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
+|+..... . .++++.++++.++|.++.++.|..|
T Consensus 99 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 139 (359)
T 3fvq_A 99 RNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHEL 139 (359)
T ss_dssp HHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGS
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 99864211 1 2356999999999998877666543
No 102
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.79 E-value=8.1e-20 Score=178.81 Aligned_cols=108 Identities=23% Similarity=0.339 Sum_probs=88.8
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh-hccceEecCCcccccc-chhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+..++ +++++||||+|.+|.+ ||++|
T Consensus 22 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 101 (240)
T 1ji0_A 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYEN 101 (240)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHH
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHH
Confidence 457999999999999999999999999999999999999999999999987776554 4569999999999987 99999
Q ss_pred cCCCC----CC--cHHHHHHHHHHcC-CCcccccccc
Q psy3001 560 LDPVG----ES--SDEAIWKALELAH-LNTFVSNLPA 589 (602)
Q Consensus 560 l~~~~----~~--~~~~i~~al~~~~-l~~~~~~~~~ 589 (602)
+.... .. ..+.+.++++.++ +.++.++.|.
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 138 (240)
T 1ji0_A 102 LMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG 138 (240)
T ss_dssp HHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSS
T ss_pred HHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChh
Confidence 85321 11 2345788888884 8776655544
No 103
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.78 E-value=9.5e-20 Score=177.90 Aligned_cols=109 Identities=26% Similarity=0.357 Sum_probs=92.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++| +++||||+|.+|..||++|+
T Consensus 20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~~~~~tv~enl 86 (237)
T 2cbz_A 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVPQQAWIQNDSLRENI 86 (237)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEECSSCCCCSEEHHHHH
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEEcCCCcCCCcCHHHHh
Confidence 35579999999999999999999999999999999999999999998 49999999998989999999
Q ss_pred CCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.......+++.+++++.+++.+.++.+|.++++.++..+.+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 128 (237)
T 2cbz_A 87 LFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNL 128 (237)
T ss_dssp HTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCC
T ss_pred hCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCC
Confidence 754333445567788888888777778888777777766654
No 104
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.78 E-value=1.9e-19 Score=185.77 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=92.4
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. +++||||||++.+|+. ||++|
T Consensus 18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~l~p~ltV~en 95 (381)
T 3rlf_A 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAEN 95 (381)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCcCCCCCCHHHH
Confidence 35579999999999999999999999999999999999999999999999887765 4679999999999976 99999
Q ss_pred cCCC---CCC----cHHHHHHHHHHcCCCccccccccCC
Q psy3001 560 LDPV---GES----SDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 560 l~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
+... ... .++++.++++.++|.++.++.|..|
T Consensus 96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~L 134 (381)
T 3rlf_A 96 MSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134 (381)
T ss_dssp HTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHC
Confidence 9632 111 2456899999999988776665543
No 105
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.78 E-value=2.4e-19 Score=175.07 Aligned_cols=106 Identities=25% Similarity=0.354 Sum_probs=89.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++ |++||+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++++||||+|.+|.. ||++|+
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCccCCCCcHHHHH
Confidence 4579999999 999999999999999999999999999999999999987533 346789999999999877 999998
Q ss_pred CCCCCC-----cHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVGES-----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~~~-----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
...... .++++.++++.+++.++.++.|..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 126 (240)
T 2onk_A 92 AYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR 126 (240)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGG
T ss_pred HHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhh
Confidence 643221 245689999999998877666543
No 106
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.78 E-value=2e-19 Score=177.92 Aligned_cols=109 Identities=21% Similarity=0.206 Sum_probs=90.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh-hhhccceEecCCccccc-cchhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQDPVLFS-GTLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~-~lr~~i~~V~Qdp~lf~-~Tv~~n 559 (602)
++++||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+.. ..|++++||||+|.+|. .||++|
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en 102 (257)
T 1g6h_A 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLEN 102 (257)
T ss_dssp EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHH
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHH
Confidence 4579999999999999999999999999999999999999999999999876543 45678999999998886 499999
Q ss_pred cCCC------C-----------CC---cHHHHHHHHHHcCCCccccccccC
Q psy3001 560 LDPV------G-----------ES---SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 560 l~~~------~-----------~~---~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+... . .. ..+++.++++.++|.++.++.|..
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 153 (257)
T 1g6h_A 103 LLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE 153 (257)
T ss_dssp HHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred HHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchh
Confidence 8421 1 11 134588999999998877666543
No 107
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.78 E-value=2.3e-19 Score=184.50 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=91.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. +++|+||||++.+|.. ||++|+
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~eni 96 (359)
T 2yyz_A 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFENI 96 (359)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECSSCCCCTTSCHHHHH
T ss_pred EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999877654 5689999999999976 999998
Q ss_pred CCCC---CCc----HHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG---ESS----DEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~---~~~----~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.... ..+ ++++.++++.++|.++.++.|..
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~ 133 (359)
T 2yyz_A 97 AFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ 133 (359)
T ss_dssp HGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGG
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhh
Confidence 6421 111 35689999999999887766653
No 108
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.78 E-value=1.2e-19 Score=181.25 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=89.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC--CCChhhhhccceEecCCccc-ccc--ch
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQDPVL-FSG--TL 556 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~--~~~~~~lr~~i~~V~Qdp~l-f~~--Tv 556 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|++|+||||+|.+ |.. ||
T Consensus 37 L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv 116 (279)
T 2ihy_A 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERV 116 (279)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBH
T ss_pred EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCH
Confidence 45799999999999999999999999999999999999999999999987 66667788899999999965 544 99
Q ss_pred hcccCCCC--------CCc---HHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPVG--------ESS---DEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~~--------~~~---~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+.... ... .+++.++++.+++.++.++.|..
T Consensus 117 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 161 (279)
T 2ihy_A 117 IDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGY 161 (279)
T ss_dssp HHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred HHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhh
Confidence 99985321 112 34588999999998876665543
No 109
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.77 E-value=2e-19 Score=178.77 Aligned_cols=108 Identities=25% Similarity=0.355 Sum_probs=90.4
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc--cccccchhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP--VLFSGTLRL 558 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp--~lf~~Tv~~ 558 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... .+|++++||||+| .++..||++
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~i~~v~q~~~~~~~~~tv~e 98 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERVFD 98 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGGEEEECSSGGGGCCCSSHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---HhhhhEEEEeccchhhcCCCcHHH
Confidence 35579999999999999999999999999999999999999999999988642 5678899999997 456789999
Q ss_pred ccCCC-----C-CCcHHHHHHHHHHcCCC--ccccccccCC
Q psy3001 559 NLDPV-----G-ESSDEAIWKALELAHLN--TFVSNLPARL 591 (602)
Q Consensus 559 nl~~~-----~-~~~~~~i~~al~~~~l~--~~~~~~~~~l 591 (602)
|+... . ....+++.++++.++|. ++.++.|..|
T Consensus 99 nl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~L 139 (266)
T 2yz2_A 99 EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFL 139 (266)
T ss_dssp HHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhC
Confidence 98531 1 12356799999999999 8877766543
No 110
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.77 E-value=4e-19 Score=183.57 Aligned_cols=106 Identities=19% Similarity=0.292 Sum_probs=85.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. +++|+||||++.+|.. ||++|+
T Consensus 27 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~eni 104 (372)
T 1v43_A 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYENI 104 (372)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCHHHHH
T ss_pred EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999877654 5689999999999976 999998
Q ss_pred CCCCC---Cc----HHHHHHHHHHcCCCcccccccc
Q psy3001 561 DPVGE---SS----DEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 561 ~~~~~---~~----~~~i~~al~~~~l~~~~~~~~~ 589 (602)
..... .+ ++++.++++.++|.++.++.|.
T Consensus 105 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~ 140 (372)
T 1v43_A 105 AFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA 140 (372)
T ss_dssp HTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChh
Confidence 64321 12 3468999999999887776654
No 111
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.77 E-value=4e-21 Score=201.07 Aligned_cols=168 Identities=17% Similarity=0.130 Sum_probs=111.1
Q ss_pred EEEeeeEEEEecCCc--------------------eEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH
Q psy3001 199 VEFKDYKVRYREGLE--------------------LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 258 (602)
Q Consensus 199 i~~~~vs~~~~~~~e--------------------~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~ 258 (602)
..++++++++.+| + ++||+|+||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 37 ~~l~~is~~i~~G-e~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 37 EILNLIELRMRAG-NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHhhhccceecCC-CCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 4688899988887 7 89999999999999999999999999999999997653
Q ss_pred hhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC
Q psy3001 259 RSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS 338 (602)
Q Consensus 259 ~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 338 (602)
+ .++++|++.. +.+. +..+-.+.. ... ...+.++. ....
T Consensus 109 ~--~~~v~q~~~~--------~~lt----------------v~D~~g~~~-----~~~-------~~~~~L~~---~~L~ 147 (413)
T 1tq4_A 109 M--ERHPYKHPNI--------PNVV----------------FWDLPGIGS-----TNF-------PPDTYLEK---MKFY 147 (413)
T ss_dssp C--CCEEEECSSC--------TTEE----------------EEECCCGGG-----SSC-------CHHHHHHH---TTGG
T ss_pred e--eEEecccccc--------CCee----------------ehHhhcccc-----hHH-------HHHHHHHH---cCCC
Confidence 1 2678875210 1110 000000000 000 11112222 1111
Q ss_pred CcccccCCcCCCChhhHHHHHHHHHHhh----------CCCeEEEecccccCChhHHHHHHHHHHHhc------c----c
Q psy3001 339 PIYSHFGETVTGNVGQRQLICLARALLR----------KTKILILDEATAAIDLETDDLIQSTIRSEF------A----H 398 (602)
Q Consensus 339 ~~~~~~~~~lsgs~Gq~Qrl~lAral~~----------~p~iliLDEpts~LD~~~~~~i~~~l~~~~------~----~ 398 (602)
.. ..... +|+..||+||++|||||.+ +|++++|||||++||+.++..+.+.+++.. . .
T Consensus 148 ~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~ 225 (413)
T 1tq4_A 148 EY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEP 225 (413)
T ss_dssp GC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred cc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 11 11112 5641139999999999999 999999999999999999998888887752 1 2
Q ss_pred cEEEEeeecccc--ccc-CCeE
Q psy3001 399 CTVLTIAHRLNT--IID-SDRV 417 (602)
Q Consensus 399 ~tvi~itH~l~~--i~~-~d~i 417 (602)
.++++.||.++. +.. ||++
T Consensus 226 ~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 226 PIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp CEEECCTTCTTSTTHHHHHHHH
T ss_pred cEEEEecCcCCccCHHHHHHHH
Confidence 568889999886 555 6655
No 112
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.77 E-value=2.1e-19 Score=184.35 Aligned_cols=107 Identities=20% Similarity=0.347 Sum_probs=90.7
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++ .+++|+||||++.+|.. ||++|+
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~eni 108 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQNYALFQHMTVYDNV 108 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEECGGGCCCTTSCHHHHH
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEEecCcccCCCCCHHHHH
Confidence 457999999999999999999999999999999999999999999999977554 36789999999999976 999998
Q ss_pred CCC---CCC----cHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPV---GES----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
... ... .++++.++++.++|.++.++.|..
T Consensus 109 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~ 145 (355)
T 1z47_A 109 SFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHE 145 (355)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCccc
Confidence 531 111 245689999999999887766653
No 113
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.77 E-value=2.3e-19 Score=184.71 Aligned_cols=107 Identities=20% Similarity=0.355 Sum_probs=91.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. +++|+||||++.+|.. ||++|+
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~eni 96 (362)
T 2it1_A 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYKNI 96 (362)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECTTCCCCTTSCHHHHH
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEecCcccCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999877654 4689999999999976 999998
Q ss_pred CCC----CCC---cHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPV----GES---SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~----~~~---~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
... ... .++++.++++.++|.++.++.|..
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~ 133 (362)
T 2it1_A 97 AFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ 133 (362)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGG
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhh
Confidence 531 111 235689999999999887766653
No 114
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.77 E-value=1.7e-19 Score=178.82 Aligned_cols=109 Identities=26% Similarity=0.327 Sum_probs=89.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC----------CCh---hhhhccceEecCC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT----------LGL---HTLRSRLTIIPQD 548 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~----------~~~---~~lr~~i~~V~Qd 548 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .+. ..+|++++||||+
T Consensus 22 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~ 101 (262)
T 1b0u_A 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH 101 (262)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSS
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecC
Confidence 457999999999999999999999999999999999999999999999862 333 3457789999999
Q ss_pred cccccc-chhcccCCC----CCC----cHHHHHHHHHHcCCCcc-ccccccC
Q psy3001 549 PVLFSG-TLRLNLDPV----GES----SDEAIWKALELAHLNTF-VSNLPAR 590 (602)
Q Consensus 549 p~lf~~-Tv~~nl~~~----~~~----~~~~i~~al~~~~l~~~-~~~~~~~ 590 (602)
+.+|.. ||++|+... ... .++++.++++.++|.++ .++.|..
T Consensus 102 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 153 (262)
T 1b0u_A 102 FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 153 (262)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred cccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCccc
Confidence 998876 999998531 111 13568899999999887 6665543
No 115
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.77 E-value=2.8e-19 Score=183.26 Aligned_cols=108 Identities=20% Similarity=0.291 Sum_probs=92.1
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++ .+++|+||||++.+|.. ||++|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCHHHH
Confidence 4557999999999999999999999999999999999999999999999977554 36789999999999987 99999
Q ss_pred cCCC----CCCcHHHHHHHHHHcCCCccccccccC
Q psy3001 560 LDPV----GESSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 560 l~~~----~~~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+... ....++++.++++.++|.++.++.|..
T Consensus 93 l~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 127 (348)
T 3d31_A 93 LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT 127 (348)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhh
Confidence 8531 112237899999999999887766653
No 116
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.76 E-value=2.3e-19 Score=184.61 Aligned_cols=110 Identities=16% Similarity=0.276 Sum_probs=90.9
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC---hhhhhccceEecCCcccccc-ch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~---~~~lr~~i~~V~Qdp~lf~~-Tv 556 (602)
.+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ....+++|+||||++.+|.. ||
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 345799999999999999999999999999999999999999999999986521 22346789999999999986 99
Q ss_pred hcccCCCC---CCc----HHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPVG---ESS----DEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~~---~~~----~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+.... ..+ ++++.++++.++|.++.++.|..
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 140 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhh
Confidence 99985321 112 35689999999999887766653
No 117
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.76 E-value=3.8e-19 Score=178.30 Aligned_cols=108 Identities=22% Similarity=0.373 Sum_probs=91.3
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++| +++||||+|.+|..||++|+
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl 119 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI 119 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEeCCCccCcccHHHHh
Confidence 45679999999999999999999999999999999999999999998 59999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
. .....+..+.++++.+++.++++++|.++++.+++.+.+|
T Consensus 120 ~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~L 160 (290)
T 2bbs_A 120 I-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 160 (290)
T ss_dssp H-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCC
T ss_pred h-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcC
Confidence 7 3233455577788889999988899988888877776654
No 118
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.75 E-value=1e-18 Score=180.95 Aligned_cols=107 Identities=19% Similarity=0.245 Sum_probs=89.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC------CChhhhhccceEecCCcccccc-
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT------LGLHTLRSRLTIIPQDPVLFSG- 554 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~------~~~~~lr~~i~~V~Qdp~lf~~- 554 (602)
+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .++. +++|+||||++.+|..
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~--~r~ig~v~Q~~~l~~~l 96 (372)
T 1g29_1 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK--DRDIAMVFQSYALYPHM 96 (372)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG--GSSEEEECSCCCCCTTS
T ss_pred EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh--HCCEEEEeCCCccCCCC
Confidence 457999999999999999999999999999999999999999999999865 4433 5689999999999975
Q ss_pred chhcccCCC----CCC---cHHHHHHHHHHcCCCccccccccC
Q psy3001 555 TLRLNLDPV----GES---SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 555 Tv~~nl~~~----~~~---~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
||++|+... ... .++++.++++.++|.++.++.|..
T Consensus 97 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~ 139 (372)
T 1g29_1 97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE 139 (372)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGG
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCccc
Confidence 999998531 111 235689999999998887766653
No 119
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.73 E-value=1.5e-17 Score=171.25 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=72.4
Q ss_pred ChhhHHHHHHHHHHh---------hCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEe
Q psy3001 351 NVGQRQLICLARALL---------RKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 351 s~Gq~Qrl~lAral~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
|+|||||++||++|+ .+|+||+|||||++||+.....+.+.+.... .|+|++|| ++. .||++++++
T Consensus 267 S~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~l~ 341 (359)
T 2o5v_A 267 SRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLRAQ 341 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEEEE
Confidence 579999999999999 8999999999999999999999999998764 79999999 444 799999999
Q ss_pred CceEEeecChhHH
Q psy3001 422 KGLVVEFDSPSVL 434 (602)
Q Consensus 422 ~G~i~~~g~~~~l 434 (602)
+|+++..|+++++
T Consensus 342 ~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 342 AGRFTPVADEEMQ 354 (359)
T ss_dssp TTEEEECCCTTTS
T ss_pred CCEEEecCCHHHH
Confidence 9999999988765
No 120
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.73 E-value=9.7e-19 Score=176.61 Aligned_cols=171 Identities=12% Similarity=0.151 Sum_probs=105.8
Q ss_pred eEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh----HHH--hhccceecccch-hhhhhc
Q psy3001 204 YKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTL--RSRLTIIPQVLA-TIFVIC 276 (602)
Q Consensus 204 vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~----~~~--~~~i~~v~Q~~~-~~~~~~ 276 (602)
++|+..++ ++++|+|+|||||||+++.|+|+++|++|+|.++|.|+..... ..+ +..+++++|++. ...
T Consensus 93 l~~~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~--- 168 (302)
T 3b9q_A 93 LQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA--- 168 (302)
T ss_dssp CCCCSSSC-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH---
T ss_pred cccccCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH---
Confidence 34444455 9999999999999999999999999999999999988765431 223 457999998632 100
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHH--HHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK--RLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
. ..+.+ ++... . ....+ .++..++.+........+|
T Consensus 169 ----~----------------------~~v~e--------~l~~~--~-~~~~d~~lldt~gl~~~~~~~~~eLS----- 206 (302)
T 3b9q_A 169 ----A----------------------TVLSK--------AVKRG--K-EEGYDVVLCDTSGRLHTNYSLMEELI----- 206 (302)
T ss_dssp ----H----------------------HHHHH--------HHHHH--H-HTTCSEEEECCCCCSSCCHHHHHHHH-----
T ss_pred ----H----------------------HHHHH--------HHHHH--H-HcCCcchHHhcCCCCcchhHHHHHHH-----
Confidence 0 00000 00000 0 00000 0001111111111111122
Q ss_pred HHHHHHHHHHhhCCC--eEEEecccccCChhHHHHHHHHHHHhccccEEEEeee---------ccccccc-CCeEEEEeC
Q psy3001 355 RQLICLARALLRKTK--ILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH---------RLNTIID-SDRVLVLDK 422 (602)
Q Consensus 355 ~Qrl~lAral~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH---------~l~~i~~-~d~i~~l~~ 422 (602)
|||++||||+..+|+ +|+|| ||+++|+.+.. ..+.+ ..+.|+|++|| .++.+.. .+.|.++..
T Consensus 207 kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~ 281 (302)
T 3b9q_A 207 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGV 281 (302)
T ss_dssp HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeC
Confidence 899999999999999 99999 99999997642 11211 23789999999 2333333 578899988
Q ss_pred ceE
Q psy3001 423 GLV 425 (602)
Q Consensus 423 G~i 425 (602)
|+.
T Consensus 282 Ge~ 284 (302)
T 3b9q_A 282 GEA 284 (302)
T ss_dssp SSS
T ss_pred CCC
Confidence 865
No 121
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.73 E-value=2.1e-18 Score=170.54 Aligned_cols=104 Identities=20% Similarity=0.318 Sum_probs=88.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccce-EecCCccccccchhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLT-IIPQDPVLFSGTLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~-~V~Qdp~lf~~Tv~~n 559 (602)
.+.++||+++ ||++||+||||||||||+++|+|++ |++|+|.++|+++... .. |++++ ||||+|.+ ..||++|
T Consensus 20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l-~~tv~en 93 (263)
T 2pjz_A 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEI-GVTVNDI 93 (263)
T ss_dssp EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCT-TSBHHHH
T ss_pred eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCcc-CCcHHHH
Confidence 3557999999 9999999999999999999999999 9999999999998754 33 77899 99999988 8899999
Q ss_pred cCCC---CCCcHHHHHHHHHHcCCC-ccccccccC
Q psy3001 560 LDPV---GESSDEAIWKALELAHLN-TFVSNLPAR 590 (602)
Q Consensus 560 l~~~---~~~~~~~i~~al~~~~l~-~~~~~~~~~ 590 (602)
+... ....++++.++++.+++. ++.++.|..
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 128 (263)
T 2pjz_A 94 VYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYK 128 (263)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGG
T ss_pred HHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhh
Confidence 8532 134577899999999998 776666543
No 122
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.72 E-value=1.6e-18 Score=170.63 Aligned_cols=108 Identities=30% Similarity=0.296 Sum_probs=87.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhc--cCCCCceEEECCeecCCCChhhh-hccceEecCCcccccc-chh
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLFSG-TLR 557 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~--~~~~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Qdp~lf~~-Tv~ 557 (602)
+.++||++++||++||+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +..++||||+|.+|.+ ||+
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 98 (250)
T 2d2e_A 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIA 98 (250)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHH
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHH
Confidence 4579999999999999999999999999999998 88999999999999988776554 4569999999999876 999
Q ss_pred cccCCC-----C--CC---cHHHHHHHHHHcCCC-cccccccc
Q psy3001 558 LNLDPV-----G--ES---SDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~-----~--~~---~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
+|+... . .. ..+++.++++.+++. ++.++.|.
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 141 (250)
T 2d2e_A 99 NFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN 141 (250)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT
T ss_pred HHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 987421 1 11 135688999999994 66655543
No 123
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.72 E-value=7e-17 Score=166.56 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=64.0
Q ss_pred CcCCCChhhHH------HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEE
Q psy3001 346 ETVTGNVGQRQ------LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVL 418 (602)
Q Consensus 346 ~~lsgs~Gq~Q------rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~ 418 (602)
..+| ||||| |+++||||+.+|++|||||||++||+.....+.+.++.+. .+.|+|+|||+.+....||+++
T Consensus 247 ~~lS--~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 247 TFLS--GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp GGSC--HHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred HHCC--HHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 3456 69999 6788888999999999999999999999999999998864 4689999999976555599999
Q ss_pred EEe
Q psy3001 419 VLD 421 (602)
Q Consensus 419 ~l~ 421 (602)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 124
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.71 E-value=4.7e-19 Score=176.21 Aligned_cols=150 Identities=11% Similarity=0.129 Sum_probs=80.9
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceee
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLY 293 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (602)
.++|+||||||||||+|+|+|+..|++|+|.++|.++.. ...++.+++++|++... +.+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~-------~~ltv--------- 64 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVK-------MKLTV--------- 64 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----C-------CEEEE---------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCc-------CCceE---------
Confidence 389999999999999999999999999999999987743 23457899999974321 00000
Q ss_pred eccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEE
Q psy3001 294 FFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILIL 373 (602)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliL 373 (602)
..+..+....... .....+..+.. .... ......+| +|||||+++|||++. +++|
T Consensus 65 ---~d~~~~g~~~~~~---~~~~~i~~~~~--~~~~------------~~~~~~LS--~G~~qrv~iaRal~~---llll 119 (270)
T 3sop_A 65 ---IDTPGFGDQINNE---NCWEPIEKYIN--EQYE------------KFLKEEVN--IARKKRIPDTRVHCC---LYFI 119 (270)
T ss_dssp ---ECCCC--CCSBCT---TCSHHHHHHHH--HHHH------------HHHHHHSC--TTCCSSCCCCSCCEE---EEEE
T ss_pred ---EechhhhhhcccH---HHHHHHHHHHH--HHHH------------hhhHHhcC--cccchhhhhheeeee---eEEE
Confidence 0000000000000 00001111111 0011 11123456 699999999999886 9999
Q ss_pred ecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 374 DEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 374 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
|||+++||+...+ +.+.+. +..++|+|.|+.+.+
T Consensus 120 dep~~gL~~lD~~-~l~~L~---~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 120 SPTGHSLRPLDLE-FMKHLS---KVVNIIPVIAKADTM 153 (270)
T ss_dssp CCCSSSCCHHHHH-HHHHHH---TTSEEEEEETTGGGS
T ss_pred ecCCCcCCHHHHH-HHHHHH---hcCcEEEEEeccccC
Confidence 9999999997733 333333 337999999887665
No 125
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.71 E-value=6.6e-19 Score=186.62 Aligned_cols=180 Identities=13% Similarity=0.085 Sum_probs=124.4
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe---ecCCC-----ChHHHhhccceecccchh
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV---DIRTL-----GLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~---~~~~~-----~~~~~~~~i~~v~Q~~~~ 271 (602)
.++++ |.+.+| ++++|+|+||||||||+++|+|+.+|+.|.|.++|. ++.++ ....+++.+++++|....
T Consensus 147 vld~v-l~i~~G-q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~ 224 (438)
T 2dpy_A 147 AINAL-LTVGRG-QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVS 224 (438)
T ss_dssp HHHHH-SCCBTT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSC
T ss_pred EEeee-EEecCC-CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCC
Confidence 46666 666666 999999999999999999999999999999999998 45432 134577889999984111
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
.+ . ...+..+ .....+.... .......++ +....+|
T Consensus 225 ~~---------~-------------------~~~v~~~------------~~~~ae~~~~-~~~~v~~~l-d~l~~lS-- 260 (438)
T 2dpy_A 225 PL---------L-------------------RMQGAAY------------ATRIAEDFRD-RGQHVLLIM-DSLTRYA-- 260 (438)
T ss_dssp HH---------H-------------------HHHHHHH------------HHHHHHHHHT-TTCEEEEEE-ECHHHHH--
T ss_pred HH---------H-------------------HHHHHHH------------HHHHHHHHHh-CCCCHHHHH-HhHHHHH--
Confidence 00 0 0000000 0000000000 000000001 1123344
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-----cc-----EEEEeeecccccccCCeEEEEe
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-----HC-----TVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-----~~-----tvi~itH~l~~i~~~d~i~~l~ 421 (602)
+|| ||++|| +.+|++ |++||+.+...+.+.+.+..+ |. ||+++|||++ ...||+++++.
T Consensus 261 ~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~ 329 (438)
T 2dpy_A 261 MAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAIL 329 (438)
T ss_dssp HHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHS
T ss_pred HHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEe
Confidence 699 999999 889988 999999999999999988643 53 9999999999 44499999999
Q ss_pred CceEEeecChhHHhh
Q psy3001 422 KGLVVEFDSPSVLMK 436 (602)
Q Consensus 422 ~G~i~~~g~~~~l~~ 436 (602)
+|+++..+++.++..
T Consensus 330 dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 330 DGHIVLSRRLAEAGH 344 (438)
T ss_dssp SEEEEECHHHHHTTC
T ss_pred CcEEEEeCCHHHccC
Confidence 999999998877654
No 126
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.70 E-value=8.8e-18 Score=172.67 Aligned_cols=171 Identities=12% Similarity=0.147 Sum_probs=106.1
Q ss_pred eEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh----HHH--hhccceecccch-hhhhhc
Q psy3001 204 YKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTL--RSRLTIIPQVLA-TIFVIC 276 (602)
Q Consensus 204 vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~----~~~--~~~i~~v~Q~~~-~~~~~~ 276 (602)
++|+..++ ++++|+|+|||||||+++.|+|+++|++|+|.++|.|+..... ..+ +..+++++|++. ...
T Consensus 150 l~l~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p--- 225 (359)
T 2og2_A 150 LQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA--- 225 (359)
T ss_dssp CCCCSSSS-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH---
T ss_pred cceecCCC-eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh---
Confidence 34444455 9999999999999999999999999999999999988765321 222 457999998632 100
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHH--HHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK--RLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
. ..+.+ ++... . ....+ .++..++.+........+|
T Consensus 226 ----~----------------------~tv~e--------~l~~~--~-~~~~d~~lldt~Gl~~~~~~~~~eLS----- 263 (359)
T 2og2_A 226 ----A----------------------TVLSK--------AVKRG--K-EEGYDVVLCDTSGRLHTNYSLMEELI----- 263 (359)
T ss_dssp ----H----------------------HHHHH--------HHHHH--H-HTTCSEEEEECCCCSSCCHHHHHHHH-----
T ss_pred ----h----------------------hhHHH--------HHHHH--H-hCCCHHHHHHhcCCChhhhhHHHHHH-----
Confidence 0 00000 00000 0 00000 0001111111111111122
Q ss_pred HHHHHHHHHHhhCCC--eEEEecccccCChhHHHHHHHHHHHhccccEEEEeeec---------cccccc-CCeEEEEeC
Q psy3001 355 RQLICLARALLRKTK--ILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR---------LNTIID-SDRVLVLDK 422 (602)
Q Consensus 355 ~Qrl~lAral~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~---------l~~i~~-~d~i~~l~~ 422 (602)
|||++||||+..+|+ +|+|| ||+++|+.+... .+.+ ..+.|+|++||- ++.+.. .+.|.++..
T Consensus 264 kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~ 338 (359)
T 2og2_A 264 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGV 338 (359)
T ss_dssp HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeC
Confidence 899999999999999 99999 999999976531 1211 237899999992 333333 578888888
Q ss_pred ceE
Q psy3001 423 GLV 425 (602)
Q Consensus 423 G~i 425 (602)
|+.
T Consensus 339 Ge~ 341 (359)
T 2og2_A 339 GEA 341 (359)
T ss_dssp SSS
T ss_pred CCC
Confidence 864
No 127
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.69 E-value=7.8e-18 Score=167.26 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=85.9
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhc--cCCCCceEEECCeecCCCChhhh-hccceEecCCcccccc-ch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~--~~~~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Qdp~lf~~-Tv 556 (602)
.+.++||++++||++||+||||||||||+|+|+|+ ++|++|+|.++|+++...+.... +++++||||+|.+|.+ ||
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 114 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSN 114 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccH
Confidence 34579999999999999999999999999999999 57899999999999987776554 4469999999998876 78
Q ss_pred hcccCCC----------CCCc----HHHHHHHHHHcCCC-ccccccc
Q psy3001 557 RLNLDPV----------GESS----DEAIWKALELAHLN-TFVSNLP 588 (602)
Q Consensus 557 ~~nl~~~----------~~~~----~~~i~~al~~~~l~-~~~~~~~ 588 (602)
++|+... ...+ ++++.++++.+++. ++.++.|
T Consensus 115 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 161 (267)
T 2zu0_C 115 QFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV 161 (267)
T ss_dssp HHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBT
T ss_pred HHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 8776320 1111 24588999999996 4544443
No 128
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.69 E-value=1.2e-18 Score=167.00 Aligned_cols=176 Identities=10% Similarity=-0.039 Sum_probs=98.5
Q ss_pred EEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccchhhhhhccCCceeEee
Q psy3001 207 RYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVICYSTPVFIFV 285 (602)
Q Consensus 207 ~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~ 285 (602)
++.+| ++++|+||||||||||+++|+|+++. |.+++. +....+ ...++.++|++|++..+........+....
T Consensus 16 ~i~~G-ei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~-~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~ 89 (207)
T 1znw_A 16 PAAVG-RVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVS-ATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWA 89 (207)
T ss_dssp ---CC-CEEEEECSTTSSHHHHHHHHHHHSTT----CEECCC-EESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred CCCCC-CEEEEECCCCCCHHHHHHHHHhhCCc----eEEccc-ccccCCcccccCCCeeEecCHHHHHHHHhcCCceeeh
Confidence 55666 99999999999999999999999963 444432 111111 123567999999865422111111111100
Q ss_pred ecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHH---
Q psy3001 286 IVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLAR--- 362 (602)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAr--- 362 (602)
. ..... . . ........ .+..+....+ .. ..... |.+.++-..++
T Consensus 90 ~---------------~~~n~--~-~--~g~~~~~~----~~~~~~~~~~-----~~--~l~~~--gl~~~~~~~~~~lS 136 (207)
T 1znw_A 90 E---------------IHGGL--H-R--SGTLAQPV----RAAAATGVPV-----LI--EVDLA--GARAIKKTMPEAVT 136 (207)
T ss_dssp E---------------EGGGT--E-E--EEEEHHHH----HHHHHHTCCE-----EE--ECCHH--HHHHHHHHCTTSEE
T ss_pred h---------------hcCch--h-h--cCCcHHHH----HHHHHcCCeE-----EE--EeCHH--HHHHHHHhcCCcEE
Confidence 0 00000 0 0 00000000 0001100000 00 00001 23333333333
Q ss_pred HHhhCCCeEEEecccccC----ChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEe
Q psy3001 363 ALLRKTKILILDEATAAI----DLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 363 al~~~p~iliLDEpts~L----D~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
||+.+|++++|||||+++ |+.....+.+.++++. .+.|+|+|||+++++.. ||+|++|.
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 788999999999999998 6678888888888764 37899999999999987 99998884
No 129
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.69 E-value=1.4e-17 Score=163.89 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=80.1
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccc-ccchhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-SGTLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf-~~Tv~~nl 560 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|. ++++++||||+|.+| ..||++|+
T Consensus 21 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v~q~~~~~~~~tv~enl 87 (253)
T 2nq2_C 21 FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFVPQFFSSPFAYSVLDIV 87 (253)
T ss_dssp EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEECSCCCCSSCCBHHHHH
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEEcCCCccCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999998 256799999999887 56999998
Q ss_pred CCCC---------CC--cHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG---------ES--SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~---------~~--~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.... .. .++++.++++.+++.++.++.|..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 128 (253)
T 2nq2_C 88 LMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS 128 (253)
T ss_dssp HGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred HHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhh
Confidence 5321 11 235689999999999877765543
No 130
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.68 E-value=3.5e-18 Score=169.05 Aligned_cols=130 Identities=21% Similarity=0.201 Sum_probs=92.0
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC-CceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~-~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.+++++ ..+| ++++|+||||||||||+++|+|+++|+ +|+|.++|.++. +++|...
T Consensus 16 vl~~i~--i~~g-~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~------------~~~~~~~-------- 72 (261)
T 2eyu_A 16 KVLELC--HRKM-GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE------------YVFKHKK-------- 72 (261)
T ss_dssp HHHHGG--GCSS-EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC------------SCCCCSS--------
T ss_pred HHHHHh--hCCC-CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce------------eecCCcc--------
Confidence 466776 5555 999999999999999999999999998 999999887642 2333210
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
.+.. + . .++.. ...-|+
T Consensus 73 -~~v~-------------q----------------~-------------------~~gl~--------------~~~l~~ 89 (261)
T 2eyu_A 73 -SIVN-------------Q----------------R-------------------EVGED--------------TKSFAD 89 (261)
T ss_dssp -SEEE-------------E----------------E-------------------EBTTT--------------BSCHHH
T ss_pred -eeee-------------H----------------H-------------------HhCCC--------------HHHHHH
Confidence 0000 0 0 00000 012279
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEe
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
+|||||..+|+++++|||| |+++...+ ++....+.+|++++|+.+....|||+++|.
T Consensus 90 ~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 90 ALRAALREDPDVIFVGEMR---DLETVETA---LRAAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 9999999999999999999 88876544 333445889999999988544478776654
No 131
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.68 E-value=6.5e-17 Score=176.69 Aligned_cols=78 Identities=13% Similarity=0.063 Sum_probs=68.3
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChh-----HHHHHHHHHHHhc-cccEEEEeeecc---------
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE-----TDDLIQSTIRSEF-AHCTVLTIAHRL--------- 408 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~-----~~~~i~~~l~~~~-~~~tvi~itH~l--------- 408 (602)
....+| +||+||+++|+++..+|++||+| ||++||.. ....+.+.++.++ .++|+|+++|+.
T Consensus 350 ~p~~LS--~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~ 426 (525)
T 1tf7_A 350 YPESAG--LEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSIT 426 (525)
T ss_dssp CGGGSC--HHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSC
T ss_pred ccccCC--HHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCccccc
Confidence 344566 69999999999999999999999 99999998 8888888887764 479999999999
Q ss_pred -ccccc-CCeEEEEeCce
Q psy3001 409 -NTIID-SDRVLVLDKGL 424 (602)
Q Consensus 409 -~~i~~-~d~i~~l~~G~ 424 (602)
..+.. ||+|++|++|+
T Consensus 427 ~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 427 DSHISTITDTIILLQYVE 444 (525)
T ss_dssp SSCCTTTCSEEEEEEEEE
T ss_pred CcccceeeeEEEEEEEEE
Confidence 67776 99999999887
No 132
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.67 E-value=5.3e-17 Score=164.44 Aligned_cols=179 Identities=13% Similarity=0.141 Sum_probs=108.5
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCc-eEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADG-TIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G-~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++++++.+.+| ++++|+|+||||||||++.|+|.+.|.+| .|.+.+.+ .+...+++++..+.+.....
T Consensus 24 ~Ld~i~~~l~~G-~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~~------ 93 (296)
T 1cr0_A 24 GINDKTLGARGG-EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRLR------ 93 (296)
T ss_dssp THHHHHCSBCTT-CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCGG------
T ss_pred HHHHHhcCCCCC-eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCChh------
Confidence 588899888888 99999999999999999999999999988 77654332 34555555544433321000
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCc-ccccCCcCCCChhh-HH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPI-YSHFGETVTGNVGQ-RQ 356 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~lsgs~Gq-~Q 356 (602)
..+.+.. ..+. .....+..+.+ +...++ +.......+ .+| +|
T Consensus 94 -----------------------~~~~l~~-------~~~~--~~~~~~~~~~~--l~~~~l~i~~~~~~~~--~~~l~~ 137 (296)
T 1cr0_A 94 -----------------------QSDSLKR-------EIIE--NGKFDQWFDEL--FGNDTFHLYDSFAEAE--TDRLLA 137 (296)
T ss_dssp -----------------------GCHHHHH-------HHHH--HTHHHHHHHHH--HSSSCEEEECCCCSCC--HHHHHH
T ss_pred -----------------------hcccccc-------CCCC--HHHHHHHHHHH--hccCCEEEECCCCCCC--HHHHHH
Confidence 0000000 0000 00000111111 000111 111112233 577 77
Q ss_pred HHHHHHHHhhCCCeEEEecccc---c---CCh-hHHHHHHHHHHHhc--cccEEEEeeecc--c----------------
Q psy3001 357 LICLARALLRKTKILILDEATA---A---IDL-ETDDLIQSTIRSEF--AHCTVLTIAHRL--N---------------- 409 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts---~---LD~-~~~~~i~~~l~~~~--~~~tvi~itH~l--~---------------- 409 (602)
|+. |+++..+|+++|+||||+ + +|. .....+.+.|+.+. .++|||+++|.. +
T Consensus 138 ~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl 216 (296)
T 1cr0_A 138 KLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDL 216 (296)
T ss_dssp HHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CC
T ss_pred HHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHh
Confidence 777 999999999999999999 4 344 45567777787764 279999999995 4
Q ss_pred ----cccc-CCeEEEEeCceE
Q psy3001 410 ----TIID-SDRVLVLDKGLV 425 (602)
Q Consensus 410 ----~i~~-~d~i~~l~~G~i 425 (602)
.+.. ||+|++|++|+.
T Consensus 217 ~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 217 RGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp C---CHHHHCSEEEEEEEC--
T ss_pred cccHHhHhhCcEEEEEecCcc
Confidence 5666 999999998874
No 133
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.66 E-value=1.1e-18 Score=164.05 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=106.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeeccccee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVL 292 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (602)
++++|+|+||||||||+++|+|+++ ++| |.++|.++..+. .+++.+++++|+... ..-..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~~g--------~~~~l-------- 61 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTLSG--------TRGPL-------- 61 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEETTS--------CEEEE--------
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEeccc--------ceehh--------
Confidence 7899999999999999999999999 999 999998875443 467889999886210 00000
Q ss_pred eeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH-HHHH---HHhhCC
Q psy3001 293 YFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI-CLAR---ALLRKT 368 (602)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl-~lAr---al~~~p 368 (602)
. .+. .... .....+..+..+..+| +|||+++ ++++ |+..+|
T Consensus 62 ----~-------~~~------~~~~----------------~~~~~~~v~~~~~~ls--~~er~~~~~l~~~a~A~~~~~ 106 (189)
T 2i3b_A 62 ----S-------RVG------LEPP----------------PGKRECRVGQYVVDLT--SFEQLALPVLRNADCSSGPGQ 106 (189)
T ss_dssp ----E-------ECC------CCCC----------------SSSCCEESSSSEECHH--HHHTTTTTTTCCCCCCCSSCC
T ss_pred ----h-------ccc------ccCC----------------ccccccccceEEEcch--HHHHHHHHHHhhhhHhhccCC
Confidence 0 000 0000 0000011333344445 5899888 4555 689999
Q ss_pred CeEEEec--ccccCChhHHHHHHHHHHHhccccEEE----EeeecccccccCCeEEEEeCceEEeec
Q psy3001 369 KILILDE--ATAAIDLETDDLIQSTIRSEFAHCTVL----TIAHRLNTIIDSDRVLVLDKGLVVEFD 429 (602)
Q Consensus 369 ~iliLDE--pts~LD~~~~~~i~~~l~~~~~~~tvi----~itH~l~~i~~~d~i~~l~~G~i~~~g 429 (602)
++||||| |+..+|+...+.+.+.++. ..++| .|+||.+ ..-+|+|..+++|++++..
T Consensus 107 dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 107 RVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred CEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 9999999 8988999887777777753 23444 4459986 3347888888888987654
No 134
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.64 E-value=5.1e-16 Score=139.37 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=67.3
Q ss_pred CCcCCCChhhHHHHHHH------HHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeE
Q psy3001 345 GETVTGNVGQRQLICLA------RALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRV 417 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lA------ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i 417 (602)
...+| ||||||++|| |||+.+|++++|||||++||+.+...+.+.+++.. +++|+|++||+++....||++
T Consensus 55 ~~~LS--gGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLS--GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp GGGSC--HHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred hhHCC--HHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 44566 6999999876 99999999999999999999999999999998864 478999999999544449999
Q ss_pred EEE--eCceE
Q psy3001 418 LVL--DKGLV 425 (602)
Q Consensus 418 ~~l--~~G~i 425 (602)
++| ++|..
T Consensus 133 i~l~~~~g~s 142 (148)
T 1f2t_B 133 IRISLENGSS 142 (148)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCeE
Confidence 999 45543
No 135
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.63 E-value=1.9e-16 Score=155.96 Aligned_cols=161 Identities=13% Similarity=0.090 Sum_probs=95.0
Q ss_pred ecCCceEEEEeccCCChhHHHHHHh--cccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeee
Q psy3001 209 REGLELVGIVGRTGAGKSSLTLALF--RIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVI 286 (602)
Q Consensus 209 ~~~~e~~~lvG~sGsGKSTL~~ll~--g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~ 286 (602)
++| ++++|+||||||||||+++|+ |+.++.+|.+.+++.+... ......+.+++.+|+.... +.+.
T Consensus 28 ~~G-~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~-------~~~~--- 95 (251)
T 2ehv_A 28 PEG-TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASFGWDFEKYEKE-------GKIA--- 95 (251)
T ss_dssp ETT-CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTTTCCHHHHHHT-------TSEE---
T ss_pred CCC-cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHcCCChHHHhhc-------CCEE---
Confidence 455 999999999999999999999 7757778888887643221 1223345678777752110 0000
Q ss_pred cccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhh
Q psy3001 287 VPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLR 366 (602)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~ 366 (602)
..+... ..... ...+.... .. ... ..+.+....+..-..
T Consensus 96 ---------------~~~~~~------~~~~~-----~~~~~~~~---------~~----~~~--~~~~~~~~~~~l~~~ 134 (251)
T 2ehv_A 96 ---------------IVDGVS------SVVGL-----PSEEKFVL---------ED----RFN--VDNFLRYIYRVVKAI 134 (251)
T ss_dssp ---------------EEC-------------------------------------------CC--HHHHHHHHHHHHHHT
T ss_pred ---------------EEEccc------ccccc-----ccccceec---------cC----ccc--HHHHHHHHHHHHHhh
Confidence 000000 00000 00000000 00 000 234444444444457
Q ss_pred CCCeEEEecccccCC-----hhHHHHHHHHHHHhc-cccEEEEeeeccccc---------cc-C-CeEEEEeC
Q psy3001 367 KTKILILDEATAAID-----LETDDLIQSTIRSEF-AHCTVLTIAHRLNTI---------ID-S-DRVLVLDK 422 (602)
Q Consensus 367 ~p~iliLDEpts~LD-----~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i---------~~-~-d~i~~l~~ 422 (602)
+|++++|||||+.+| +...+.+.+.++.+. .|+|+|++||+++.+ .. | |+|++|++
T Consensus 135 ~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~~ 207 (251)
T 2ehv_A 135 NAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLDL 207 (251)
T ss_dssp TCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEEE
T ss_pred CCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEee
Confidence 999999999999997 566666877777764 479999999999887 44 7 99999964
No 136
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.61 E-value=4.1e-16 Score=178.27 Aligned_cols=83 Identities=11% Similarity=0.033 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHH--hhCCCeEEEecccccCChhHHHHH-HHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEE
Q psy3001 352 VGQRQLICLARAL--LRKTKILILDEATAAIDLETDDLI-QSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVV 426 (602)
Q Consensus 352 ~Gq~Qrl~lAral--~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~ 426 (602)
++++++..+|+++ +.+|+++||||||+++|+.....+ +..++.+. .++|+|++||+.+....||++..+.+|++.
T Consensus 724 tf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 724 TFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVT 803 (934)
T ss_dssp HHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEE
T ss_pred hhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEE
Confidence 4777777777777 899999999999999999887776 55555553 379999999998776669999999999998
Q ss_pred eecChhHH
Q psy3001 427 EFDSPSVL 434 (602)
Q Consensus 427 ~~g~~~~l 434 (602)
..++.+++
T Consensus 804 ~~~~~~~l 811 (934)
T 3thx_A 804 ALTTEETL 811 (934)
T ss_dssp EEEETTEE
T ss_pred EEecCCcE
Confidence 77665544
No 137
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.61 E-value=1.2e-16 Score=164.31 Aligned_cols=183 Identities=14% Similarity=0.116 Sum_probs=114.7
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++++ |.+.+| ++++|+|+||||||||+++|+|+..|+.|.|.+.|.+ ..++++.++++++. .. ..
T Consensus 61 ald~l-l~i~~G-q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~-----~~ev~~~i~~~~~~-~~------~~ 126 (347)
T 2obl_A 61 AIDGL-LTCGIG-QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER-----GREVNEFLALLPQS-TL------SK 126 (347)
T ss_dssp HHHHH-SCEETT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC-----HHHHHHHHTTSCHH-HH------TT
T ss_pred EEEee-eeecCC-CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc-----HHHHHHHHHhhhhh-hh------hc
Confidence 45566 666666 9999999999999999999999999999999998864 23333333331110 00 00
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCc--ccccCCcCCCChhhHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPI--YSHFGETVTGNVGQRQL 357 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~lsgs~Gq~Qr 357 (602)
...+.. +. +.+. ........... ...+.+...+ ..+ .-.....+| +|| ||
T Consensus 127 ~v~~~~-----------~~----~~~~--------~~r~~~~~~~~-~~ae~~~~~~-~~vl~~ld~~~~lS--~g~-r~ 178 (347)
T 2obl_A 127 CVLVVT-----------TS----DRPA--------LERMKAAFTAT-TIAEYFRDQG-KNVLLMMDSVTRYA--RAA-RD 178 (347)
T ss_dssp EEEEEE-----------CT----TSCH--------HHHHHHHHHHH-HHHHHHHTTT-CEEEEEEETHHHHH--HHH-HH
T ss_pred eEEEEE-----------CC----CCCH--------HHHHHHHHHHH-HHHHHHHhcc-ccHHHHHhhHHHHH--HHH-HH
Confidence 000000 00 0000 00000000000 0001000100 000 001223445 699 89
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc---ccc-----EEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF---AHC-----TVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+++| +.+|++ |+++|+.....+.+.+++.. .|. ||+++||+++ .. ||+++++.+|+++..
T Consensus 179 v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~ 247 (347)
T 2obl_A 179 VGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLT 247 (347)
T ss_dssp HHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBC
T ss_pred HHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEe
Confidence 9999 688887 99999999999999998875 266 8999999999 44 999999999999998
Q ss_pred cChhHHh
Q psy3001 429 DSPSVLM 435 (602)
Q Consensus 429 g~~~~l~ 435 (602)
++..++.
T Consensus 248 ~~l~~~~ 254 (347)
T 2obl_A 248 RELAEEN 254 (347)
T ss_dssp HHHHTTT
T ss_pred CCHHHcC
Confidence 8877654
No 138
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.58 E-value=9e-16 Score=177.69 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhH-HHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLET-DDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~-~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
++.+++++|++++.+|+++|||||++++|+.. ...++..++.+. . ++++|++||+++.+.. +|++.++ +|++.
T Consensus 854 ~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 854 VELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 55666999999999999999999999999987 455667777664 3 7899999999999887 8998876 58876
No 139
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.57 E-value=3.3e-15 Score=145.06 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhh-------CCCeEEEecccccCChh-------HH-----HHHHHHHHHhc--cccEEEEeeeccc---
Q psy3001 354 QRQLICLARALLR-------KTKILILDEATAAIDLE-------TD-----DLIQSTIRSEF--AHCTVLTIAHRLN--- 409 (602)
Q Consensus 354 q~Qrl~lAral~~-------~p~iliLDEpts~LD~~-------~~-----~~i~~~l~~~~--~~~tvi~itH~l~--- 409 (602)
+++.+..+++++. +|+++++||||+.+|++ .+ ..+...+.+.. .++|||+++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g 184 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGG 184 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcc
Confidence 3344455555554 89999999999999984 11 24555555542 3799999999544
Q ss_pred -cccc-CCeEEEEeCc
Q psy3001 410 -TIID-SDRVLVLDKG 423 (602)
Q Consensus 410 -~i~~-~d~i~~l~~G 423 (602)
.+.. ||+++++++|
T Consensus 185 ~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 185 HILAHSATLRVYLRKG 200 (231)
T ss_dssp -----CCSEEEEEEEC
T ss_pred hhhHhhceEEEEEEec
Confidence 4777 9999999875
No 140
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.54 E-value=1.6e-14 Score=140.27 Aligned_cols=156 Identities=11% Similarity=0.093 Sum_probs=101.2
Q ss_pred EecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhh---ccceecccchhhhhhccCCceeEe
Q psy3001 208 YREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRS---RLTIIPQVLATIFVICYSTPVFIF 284 (602)
Q Consensus 208 ~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~---~i~~v~Q~~~~~~~~~~~~~~~~~ 284 (602)
+++| ++++|+|+||||||||++.+++...+.+|.+.+.+.+. ....+.+ .+++.+|...
T Consensus 20 i~~G-~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------------- 81 (235)
T 2w0m_A 20 IPQG-FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI-------------- 81 (235)
T ss_dssp EETT-CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB--------------
T ss_pred CcCC-CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh--------------
Confidence 4455 99999999999999999999999888888888765433 2333322 3343333210
Q ss_pred eecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHH
Q psy3001 285 VIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARAL 364 (602)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral 364 (602)
...+. +.+ ..... .. .. .. ....+ .+|.++...+.+.
T Consensus 82 ------------~~~~~----~~~--------~~~~~-------~~--~~-----~~---~~~~~--~~~~~~~~~~~~~ 118 (235)
T 2w0m_A 82 ------------EKKLI----IID--------ALMKE-------KE--DQ-----WS---LVNLT--PEELVNKVIEAKQ 118 (235)
T ss_dssp ------------TTTEE----EEE--------CCC-------------CT-----TB---CSSCC--HHHHHHHHHHHHH
T ss_pred ------------hCCEE----EEe--------ccccc-------cC--ce-----ee---ecCCC--HHHHHHHHHHHHH
Confidence 00000 000 00000 00 00 00 01112 5888888777777
Q ss_pred hhCCC--eEEEecccccC--ChhHHHHHHHHHHHhc--cccEEEEeeecc--------ccccc-CCeEEEEeCce
Q psy3001 365 LRKTK--ILILDEATAAI--DLETDDLIQSTIRSEF--AHCTVLTIAHRL--------NTIID-SDRVLVLDKGL 424 (602)
Q Consensus 365 ~~~p~--iliLDEpts~L--D~~~~~~i~~~l~~~~--~~~tvi~itH~l--------~~i~~-~d~i~~l~~G~ 424 (602)
..+|+ ++++||||+.+ |+.....+.+.++++. .++|+|+++|.. ..+.. ||+|++|+...
T Consensus 119 ~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 119 KLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 78999 99999999988 9988888888887763 378999999999 45766 99999998653
No 141
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.52 E-value=8e-16 Score=155.99 Aligned_cols=152 Identities=18% Similarity=0.148 Sum_probs=88.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeeccccee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVL 292 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (602)
+++||+|+||||||||+++|+|+++|..|. +.+++++|+.. ++
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~-----------~~--------- 133 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGF-----------LY--------- 133 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGG-----------BC---------
T ss_pred EEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCcc-----------CC---------
Confidence 899999999999999999999999998663 45789998732 11
Q ss_pred eeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEE
Q psy3001 293 YFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILI 372 (602)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~ili 372 (602)
..+...+-........+.... .....+.++.+. ..........+| +||+||+++|||++.+|+|||
T Consensus 134 ----~~t~~e~~~~~~~~g~~~~~d----~~~~~~~L~~l~----~~~~~~~~~~lS--~G~~qRv~~a~al~~~p~ilI 199 (312)
T 3aez_A 134 ----PNAELQRRNLMHRKGFPESYN----RRALMRFVTSVK----SGSDYACAPVYS--HLHYDIIPGAEQVVRHPDILI 199 (312)
T ss_dssp ----CHHHHHHTTCTTCTTSGGGBC----HHHHHHHHHHHH----TTCSCEEEEEEE--TTTTEEEEEEEEEECSCSEEE
T ss_pred ----cccHHHHHHHHHhcCCChHHH----HHHHHHHHHHhC----CCcccCCcccCC--hhhhhhhhhHHHhccCCCEEE
Confidence 001110000000000000000 111222233222 111112234566 599999999999999999999
Q ss_pred EecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc--CCeEEEEeC
Q psy3001 373 LDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID--SDRVLVLDK 422 (602)
Q Consensus 373 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~--~d~i~~l~~ 422 (602)
||||++.+|+... .+.... ..+|+|+|+.+.... .+|.+.+++
T Consensus 200 lDep~~~~d~~~~-----~l~~~~--D~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 200 LEGLNVLQTGPTL-----MVSDLF--DFSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EECTTTTCCCSSC-----CGGGGC--SEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ECCccccCCcchH-----HHHHhc--CcEEEEECCHHHHHHHHHHHHHHHHh
Confidence 9999999985221 111111 245777777655422 444443433
No 142
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.52 E-value=2.8e-15 Score=168.46 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=94.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-CCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|++++ | ++++|+||||||||||+|+++|+.. +..|.+.- . .+..+++++|.
T Consensus 566 ~~vl~disl~---g-~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp----a-------~~~~i~~v~~i-------- 622 (765)
T 1ewq_A 566 EFVPNDLEMA---H-ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP----A-------EEAHLPLFDGI-------- 622 (765)
T ss_dssp CCCCEEEEES---S-CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS----S-------SEEEECCCSEE--------
T ss_pred ceEeeeccCC---C-cEEEEECCCCCChHHHHHHHHhhhhhcccCceee----h-------hccceeeHHHh--------
Confidence 4578899998 4 9999999999999999999999874 66676420 0 12344554431
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. .. .+.+ + + ...+| +|++|
T Consensus 623 ------~~------------~~------~~~d--------~-----------l---------------~~g~S--~~~~e 642 (765)
T 1ewq_A 623 ------YT------------RI------GASD--------D-----------L---------------AGGKS--TFMVE 642 (765)
T ss_dssp ------EE------------EC------CC----------------------------------------CCS--HHHHH
T ss_pred ------hc------------cC------CHHH--------H-----------H---------------Hhccc--HHHHH
Confidence 00 00 0000 0 0 00123 59999
Q ss_pred HHHHHHHH--hhCCCeEEEecc---cccCChhHH-HHHHHHHHHhccccEEEEeeecccccccC
Q psy3001 357 LICLARAL--LRKTKILILDEA---TAAIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDS 414 (602)
Q Consensus 357 rl~lAral--~~~p~iliLDEp---ts~LD~~~~-~~i~~~l~~~~~~~tvi~itH~l~~i~~~ 414 (602)
++.+|+++ +.+|+++||||| |+++|+.+. ..+.+.+.+ .++|+|++||+.+....+
T Consensus 643 ~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 643 MEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 99999999 999999999999 999999875 467777766 578999999998775444
No 143
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.51 E-value=1.2e-14 Score=165.81 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHH-HHHHHhc--cccEEEEeeecccccccCCe
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ-STIRSEF--AHCTVLTIAHRLNTIIDSDR 416 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~l~~i~~~d~ 416 (602)
+|++|++.++++ +.+|+++||||||+++|+.....+. ..++.+. .++|+|++||+++....+|+
T Consensus 738 ~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 738 EELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred HHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 699999999999 8999999999999999998887776 5565542 47999999999887654543
No 144
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.51 E-value=9.1e-15 Score=147.53 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=48.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh----HHH--hhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTL--RSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~----~~~--~~~i~~v~Q~ 268 (602)
++++|+|+|||||||++++|+|+++|++|+|.++|.|+..... ..+ +..+++++|+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~ 164 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGP 164 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeC
Confidence 8999999999999999999999999999999999998865432 222 4568899986
No 145
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.50 E-value=3.5e-14 Score=130.74 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=67.5
Q ss_pred CcCCCChhhHHHHHHHHHHhh----CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEE-
Q psy3001 346 ETVTGNVGQRQLICLARALLR----KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL- 420 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l- 420 (602)
..+| ||||||++|||+|+. +|+++||||||++||+.+...+.+.+++..++.++|+|||+...+..||+++.+
T Consensus 63 ~~LS--gGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 63 EAMS--GGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp GGCC--HHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccCC--HHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 3456 699999999999974 469999999999999999999999999887778999999998887779999865
Q ss_pred -eCceE
Q psy3001 421 -DKGLV 425 (602)
Q Consensus 421 -~~G~i 425 (602)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 46643
No 146
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.48 E-value=1.5e-15 Score=168.12 Aligned_cols=162 Identities=13% Similarity=0.168 Sum_probs=99.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC-CCceEEECCeecCCC---ChHHHhhccceecccchhhhhhccCCceeEeeecc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP-ADGTIIIDGVDIRTL---GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVP 288 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~-~~G~I~i~g~~~~~~---~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~ 288 (602)
..+||+|+||||||||+++|+|++.| ++|.|.++|.++... ....+++.+++++|++. ++
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~-----------l~----- 109 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIE-----------IS----- 109 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CC-----------CC-----
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeeccccc-----------CC-----
Confidence 45999999999999999999999988 899999999985321 13456788999998621 11
Q ss_pred cceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCC
Q psy3001 289 VSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKT 368 (602)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p 368 (602)
...++.++ +. .....+.. .+. +..++++.++.+....|
T Consensus 110 -------------~~~tv~e~--------i~-------~~~~~~~~---------~~~-----~~s~~~i~l~i~~~~~p 147 (608)
T 3szr_A 110 -------------DASEVEKE--------IN-------KAQNAIAG---------EGM-----GISHELITLEISSRDVP 147 (608)
T ss_dssp -------------CHHHHHTT--------HH-------HHHHHHHC---------SSS-----CCCSCCEEEEEEESSSC
T ss_pred -------------CHHHHHHH--------HH-------HHHHHhcC---------Ccc-----ccchHHHHHHhcCCCCC
Confidence 00011110 00 00111100 000 11223333444445689
Q ss_pred CeEEEecc------cccCChhHHHHHHHHHHHh-cc--ccEEEEeeeccccccc-------------CCeEEEEeCceEE
Q psy3001 369 KILILDEA------TAAIDLETDDLIQSTIRSE-FA--HCTVLTIAHRLNTIID-------------SDRVLVLDKGLVV 426 (602)
Q Consensus 369 ~iliLDEp------ts~LD~~~~~~i~~~l~~~-~~--~~tvi~itH~l~~i~~-------------~d~i~~l~~G~i~ 426 (602)
+++++||| |++||+.....+.+.++.+ .+ +.++++++|+++.... ...|.|+.++.++
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv 227 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLV 227 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGS
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhc
Confidence 99999999 9999999999999999885 22 4788999999874421 3568899888777
Q ss_pred eecChh
Q psy3001 427 EFDSPS 432 (602)
Q Consensus 427 ~~g~~~ 432 (602)
..|+.+
T Consensus 228 ~~g~~~ 233 (608)
T 3szr_A 228 DKGTED 233 (608)
T ss_dssp SSSSTT
T ss_pred CcccHH
Confidence 766544
No 147
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.46 E-value=1e-15 Score=141.04 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=41.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCeecCCCC---hHHHh-hccc----eeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLG---LHTLR-SRLT----IIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~~~~~~---~~~~~-~~i~----~v~Q~ 268 (602)
++++|+|+||||||||+++|.|+++|. .|.|.++|.++.+++ .+.+| +.++ +++|+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~ 69 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPV 69 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCC
Confidence 579999999999999999999999998 899999999987775 56777 5788 67775
No 148
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.45 E-value=1.8e-14 Score=148.48 Aligned_cols=58 Identities=26% Similarity=0.248 Sum_probs=46.4
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeC
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
+|||||.++|+++++|||| |+++...+.+. ...|.|+++++|+.+.+..+||+++|..
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcC
Confidence 8999999999999999999 77665544333 3358899999999998855888877643
No 149
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.45 E-value=5.5e-14 Score=145.02 Aligned_cols=158 Identities=18% Similarity=0.166 Sum_probs=95.4
Q ss_pred EEEecCCceEEEEeccCCChhHHHHHHhccc--CCCC----ce-EEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 206 VRYREGLELVGIVGRTGAGKSSLTLALFRII--EPAD----GT-IIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 206 ~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~--~~~~----G~-I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
+.+++| ++++|+|+||||||||++.+++.+ +|+. |. |++++.+.. .++++++++|.+..
T Consensus 126 ggi~~G-~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~------- 191 (349)
T 1pzn_A 126 GGIETQ-AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL------- 191 (349)
T ss_dssp SSEESS-EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC-------
T ss_pred CCCCCC-eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC-------
Confidence 445566 999999999999999999999998 6665 67 888886541 13456666664210
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+ . .++ .+ .+. +.. .. .+.+|+|++
T Consensus 192 ----~-------------~------~~v----------------------~~---ni~----~~~---~~-~~~~~~~~l 215 (349)
T 1pzn_A 192 ----D-------------P------DEV----------------------LK---HIY----VAR---AF-NSNHQMLLV 215 (349)
T ss_dssp ----C-------------H------HHH----------------------GG---GEE----EEE---CC-SHHHHHHHH
T ss_pred ----C-------------H------HHH----------------------hh---CEE----EEe---cC-ChHHHHHHH
Confidence 0 0 000 00 000 000 00 014788899
Q ss_pred HHHHHHh-------hCCCeEEEecccccCChhH------------HHHHHHHHHHhc--cccEEEEeeeccccccc-CCe
Q psy3001 359 CLARALL-------RKTKILILDEATAAIDLET------------DDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDR 416 (602)
Q Consensus 359 ~lAral~-------~~p~iliLDEpts~LD~~~------------~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~ 416 (602)
.++++++ .+|+++|+||||+.+|++. ...+...|+.+. .++|||+++|....... ++.
T Consensus 216 ~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~ 295 (349)
T 1pzn_A 216 QQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGD 295 (349)
T ss_dssp HHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------
T ss_pred HHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCC
Confidence 9999988 5899999999999999852 234444455443 37899999998775543 344
Q ss_pred EEEEeCceEEeecChhH
Q psy3001 417 VLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 417 i~~l~~G~i~~~g~~~~ 433 (602)
..+...|++.+++.+..
T Consensus 296 ~~~~~~G~~l~~~~~~r 312 (349)
T 1pzn_A 296 PTRPIGGHILAHSATLR 312 (349)
T ss_dssp ------CCCCCTTCSEE
T ss_pred ccccCCcceEeecCcEE
Confidence 56666777766655433
No 150
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.42 E-value=3.6e-15 Score=143.00 Aligned_cols=55 Identities=7% Similarity=0.167 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhhCCCeEEEeccccc-------CChhHHHHHHHHHHHh--ccccEEEEeeecc
Q psy3001 354 QRQLICLARALLRKTKILILDEATAA-------IDLETDDLIQSTIRSE--FAHCTVLTIAHRL 408 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~-------LD~~~~~~i~~~l~~~--~~~~tvi~itH~l 408 (602)
|+||+++||+++.+|+++++||||++ ||+..+..+.+.+++. ..|+|++.++|+.
T Consensus 98 ~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 98 RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45789999999999999999999999 9999988888888664 2478999999984
No 151
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.42 E-value=1.2e-13 Score=150.52 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=68.1
Q ss_pred ChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCc
Q psy3001 351 NVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G 423 (602)
||||+||++|||||+.+| ++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||++++|+++
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 479999999999999999 9999999999999999999999999887789999999999987779999999654
No 152
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.40 E-value=2.3e-14 Score=140.78 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=82.9
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+||+..++ +++||+|+||||||||+++|+|++ |.+.++ ..++.+++++|+.. +
T Consensus 11 ~~~~l~~isl~i~~g-~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~--~--- 70 (245)
T 2jeo_A 11 VDLGTENLYFQSMRP-FLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRF--Y--- 70 (245)
T ss_dssp ------------CCS-EEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGG--B---
T ss_pred CceeecceeccCCCC-EEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcC--c---
Confidence 345799999999988 999999999999999999999976 444433 35677889998621 0
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+.+ .......+......+.. +..... ....+.++.+.. + .......+| +||+|
T Consensus 71 ---~~l-----~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~L~~l~~----~-~~~~~~~ls--~g~~~ 123 (245)
T 2jeo_A 71 ---KVL-----TAEQKAKALKGQYNFDH--------PDAFDN----DLMHRTLKNIVE----G-KTVEVPTYD--FVTHS 123 (245)
T ss_dssp ---CCC-----CHHHHHHHHTTCCCTTS--------GGGBCH----HHHHHHHHHHHT----T-CCEEECCEE--TTTTE
T ss_pred ---ccc-----CHhHhhhhhccCCCCCC--------cccccH----HHHHHHHHHHHC----C-CCeeccccc--ccccC
Confidence 000 00000000000000000 000000 111122222211 1 112223455 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
|+++ ++++.+|+++|||||....+.. +... .+.+|+++||+...+
T Consensus 124 r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~-~~~~i~v~th~~~~~ 168 (245)
T 2jeo_A 124 RLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM-FHLRLFVDTDSDVRL 168 (245)
T ss_dssp ECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT-CSEEEEEECCHHHHH
T ss_pred ccCc-eEEecCCCEEEEeCccccccHH--------HHHh-cCeEEEEECCHHHHH
Confidence 9988 6888999999999987776653 2222 368999999974444
No 153
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.40 E-value=2.4e-13 Score=153.77 Aligned_cols=75 Identities=5% Similarity=-0.078 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHH-HHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEEe
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLI-QSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~ 427 (602)
++.++++.+...+.+|+++|||||++++|+.....+ ...++.+. .++++|++||+.+....||++..+.+|++..
T Consensus 672 ~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 672 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 334455555556899999999999999998765554 55666553 3789999999998765588876777777653
No 154
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.38 E-value=5.9e-15 Score=140.07 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=92.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC-------------CCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE-------------PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~-------------~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
+.++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~----------- 68 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAG----------- 68 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHT-----------
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcC-----------
Confidence 7899999999999999999999986 77887 588887777777777765 343
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH---
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ--- 356 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q--- 356 (602)
++++...+... ++. ...... .+..+ . +...+. ... . .|-++
T Consensus 69 ~~l~~~~~~~n-~~g---------------------~~~~~i----~~~~~---~-~~~~~~-~~~--~---~g~~~~~~ 112 (198)
T 1lvg_A 69 DFIEHAEFSGN-LYG---------------------TSKEAV----RAVQA---M-NRICVL-DVD--L---QGVRSIKK 112 (198)
T ss_dssp CEEEEEEETTE-EEE---------------------EEHHHH----HHHHH---T-TCEEEE-ECC--H---HHHHHHTT
T ss_pred CCEeeeeecCc-cCC---------------------CCHHHH----HHHHH---c-CCcEEE-ECC--H---HHHHHHHh
Confidence 33332111000 000 000000 00000 0 000000 000 0 01111
Q ss_pred -HHHHHH-HHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeC
Q psy3001 357 -LICLAR-ALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 357 -rl~lAr-al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
++ .|| +++.+|++++|||+|+++|.++++.+.+.+.....+ +.++| +. ..+|+|+++++
T Consensus 113 ~~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 113 TDL-CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SSC-CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred cCC-CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 12 456 788999999999999999999999999888776443 34567 33 55999988764
No 155
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.36 E-value=3e-14 Score=148.47 Aligned_cols=147 Identities=12% Similarity=0.118 Sum_probs=89.5
Q ss_pred eeEEEEec--CCceEEEEeccCCChhHHHHHHhcccCCCC----ceEEEC----CeecCCCChHHHhhccceecccchhh
Q psy3001 203 DYKVRYRE--GLELVGIVGRTGAGKSSLTLALFRIIEPAD----GTIIID----GVDIRTLGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 203 ~vs~~~~~--~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~----G~I~i~----g~~~~~~~~~~~~~~i~~v~Q~~~~~ 272 (602)
.|++.+.+ + +.++|+|+||||||||+++|+|+++|++ |+|.++ |.++ .+....+ +.|++++|++..
T Consensus 160 ~v~~~v~~~lg-~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~- 235 (365)
T 1lw7_A 160 FIPKEARPFFA-KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYID- 235 (365)
T ss_dssp GSCTTTGGGTC-EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHH-
T ss_pred hCCHHHHHhhh-CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHH-
Confidence 34444555 5 8899999999999999999999999999 998873 4444 4444445 457777775321
Q ss_pred hhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+.. ++.+++..... .. ... .... .+ +
T Consensus 236 ~~~-----------------------------t~~~nl~~~~~-~~---~~~--~~~~-----------------~~--~ 261 (365)
T 1lw7_A 236 YAV-----------------------------RHSHKIAFIDT-DF---ITT--QAFC-----------------IQ--Y 261 (365)
T ss_dssp HHH-----------------------------HHCSSEEEESS-CH---HHH--HHHH-----------------HH--H
T ss_pred HHH-----------------------------hccCCEEEEeC-Cc---hHH--HHHH-----------------HH--H
Confidence 100 00000000000 00 000 0000 01 2
Q ss_pred hhHHHHHHHHHHh-hCCCeEEEec---cc------ccCChhHHHHHHHHHHHhcc--ccEEEEeeec
Q psy3001 353 GQRQLICLARALL-RKTKILILDE---AT------AAIDLETDDLIQSTIRSEFA--HCTVLTIAHR 407 (602)
Q Consensus 353 Gq~Qrl~lAral~-~~p~iliLDE---pt------s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~ 407 (602)
|++|+..+++++. .+|++++||| |+ .++|+..+..+.+.+++..+ +.++++++|.
T Consensus 262 ~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 262 EGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp HSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred cCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 5567777777764 5899999999 54 57898888888888876543 6788888874
No 156
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.36 E-value=2.3e-12 Score=128.96 Aligned_cols=65 Identities=6% Similarity=0.139 Sum_probs=46.9
Q ss_pred cccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccc--cCChhHH---HHHHHHHHHhc--cccEEEEeeeccccc
Q psy3001 342 SHFGETVTGNVGQRQLICLARALLRKTKILILDEATA--AIDLETD---DLIQSTIRSEF--AHCTVLTIAHRLNTI 411 (602)
Q Consensus 342 ~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts--~LD~~~~---~~i~~~l~~~~--~~~tvi~itH~l~~i 411 (602)
......+| +||+|++ ++++.+|+++|+||||+ ++|+... ..+...|+.+. .++|||+++|.....
T Consensus 113 ~~~~~~ls--~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 113 GSLPNIMA--PEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp TSCCCTTS--HHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred CCCcccCC--HHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 33444555 5887765 68889999999999999 8887544 66667777653 379999999987654
No 157
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.36 E-value=1e-14 Score=151.35 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=60.7
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEec-CCccc---cccchhcc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP-QDPVL---FSGTLRLN 559 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~-Qdp~l---f~~Tv~~n 559 (602)
.++|++++|+.++|+|+||||||||+++|+|+++|++|.|.++|. ..+.....++.++|++ |++.+ +..|+++|
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~ 244 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATL 244 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCCCCTTCSSEEEEECC----------CCHHHH
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cccCccccCCEEEEeecCccccccccccCHHHH
Confidence 588999999999999999999999999999999999999999974 3444445678899999 99875 67799988
Q ss_pred cC
Q psy3001 560 LD 561 (602)
Q Consensus 560 l~ 561 (602)
+.
T Consensus 245 i~ 246 (361)
T 2gza_A 245 LR 246 (361)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 158
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.35 E-value=3.6e-13 Score=136.09 Aligned_cols=152 Identities=13% Similarity=0.079 Sum_probs=68.3
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc-cCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI-IEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~-~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.+++++|+ ++|+|+||||||||++.|+|. ..|++| |.++|.++.. .. -.+.+++++|.....
T Consensus 13 ~l~~~~~~-------I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~~q~~~~~------ 75 (301)
T 2qnr_A 13 VKKGFEFT-------LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVEIEERGVK------ 75 (301)
T ss_dssp -----CEE-------EEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CC------
T ss_pred EEcCCCEE-------EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEEecCCCcc------
Confidence 45666655 499999999999999999998 889999 8888876643 11 135577787752210
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+.+. . -.+..+...... ......+... .....+ .....+| +|||||+
T Consensus 76 -~~lt-v-----------~Dt~g~~~~~~~---~e~~~~l~~~---l~~~~~------------~~~~~~s--gg~rqrv 122 (301)
T 2qnr_A 76 -LRLT-V-----------VDTPGYGDAINC---RDCFKTIISY---IDEQFE------------RYLHDES--GLNRRHI 122 (301)
T ss_dssp -EEEE-E-----------EEEC--------------CTTHHHH---HHHHHH------------HHHHHHT--SSCCTTC
T ss_pred -cCcc-h-----------hhhhhhhhhcCc---HHHHHHHHHH---HHHHHH------------HHHHHhC--HHhhhhh
Confidence 0000 0 000000000000 0000001000 000000 1112234 6999999
Q ss_pred HHHHHHhhCCCeEEEeccccc-CChhHHHHHHHHHHHhcc--ccEEEEeeeccc
Q psy3001 359 CLARALLRKTKILILDEATAA-IDLETDDLIQSTIRSEFA--HCTVLTIAHRLN 409 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~-LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~ 409 (602)
++|||++ ++++||||++ ||+... +.++.+.. +.++|+..||+.
T Consensus 123 ~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 123 IDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred hhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999985 9999999986 999774 33333332 578888889874
No 159
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.35 E-value=5.3e-14 Score=129.58 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=66.5
Q ss_pred eeEEEECCCCCChHHHHHHHHhccCCC---CceEEECCeecCCCC---hhhhh-ccce----EecCCccccccchhcccC
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLG---LHTLR-SRLT----IIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~~~---~G~I~i~g~~i~~~~---~~~lr-~~i~----~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++|+|+||||||||+++|+|+++|+ .|+|++||.++..++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 468999999999999999999999998 899999999877665 56777 4688 899999888 322
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccc-cccCCCccccCC
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSN-LPARLQHEVSEG 598 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~-~~~~l~~~v~~~ 598 (602)
. +++. .+++++++++ +| ++|+.|+|+
T Consensus 77 ----~-~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg 103 (171)
T 2f1r_A 77 ----V-SEEE-----GNDLDWIYERYLS-DYDLVITEG 103 (171)
T ss_dssp ----C-CHHH-----HTCHHHHHHHHTT-TCSEEEEES
T ss_pred ----C-Chhh-----hhCHHHHHHhhCC-CCCEEEECC
Confidence 0 1222 7789999999 99 899999885
No 160
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.35 E-value=5.2e-14 Score=141.20 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=60.1
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhc-ccC
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRL-NLD 561 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~-nl~ 561 (602)
++++|++++|+++||+||||||||||+++|+|++ +|+| ++|++|+|.+|.+|+++ |+.
T Consensus 117 ~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~ 175 (305)
T 2v9p_A 117 KLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAA 175 (305)
T ss_dssp HHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCE
T ss_pred ccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhc
Confidence 4689999999999999999999999999999999 7888 46789999999999997 887
Q ss_pred CCCCCcHHHHHHHHHH
Q psy3001 562 PVGESSDEAIWKALEL 577 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~ 577 (602)
+....++ .+++.++.
T Consensus 176 ~~~~~~~-~~~~~i~~ 190 (305)
T 2v9p_A 176 LVDDATH-ACWRYFDT 190 (305)
T ss_dssp EEEEECH-HHHHHHHH
T ss_pred cCccccH-HHHHHHHH
Confidence 5433333 45555444
No 161
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.35 E-value=1e-13 Score=144.20 Aligned_cols=119 Identities=23% Similarity=0.297 Sum_probs=84.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCC-CceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccce
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSV 291 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~-~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~ 291 (602)
++++|+|||||||||++++|+|+++|+ +|+|.+.+.++. + .++..+++++|..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~---------------------- 190 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQRE---------------------- 190 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEE----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeee----------------------
Confidence 789999999999999999999999998 899987665543 1 2345666666620
Q ss_pred eeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeE
Q psy3001 292 LYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKIL 371 (602)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~il 371 (602)
++.. ...+ +.+|+++|..+|+++
T Consensus 191 -------------------------------------------~g~~------~~~~--------~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 191 -------------------------------------------VGED------TKSF--------ADALRAALREDPDVI 213 (372)
T ss_dssp -------------------------------------------BTTT------BSCS--------HHHHHHHTTSCCSEE
T ss_pred -------------------------------------------cCCC------HHHH--------HHHHHHHhhhCcCEE
Confidence 0000 0011 358999999999999
Q ss_pred EEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEE
Q psy3001 372 ILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL 420 (602)
Q Consensus 372 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l 420 (602)
++|||+ |+++.. .+++....|.+++.++|..+....+||++.|
T Consensus 214 lldE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 214 FVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp EESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred EECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 999999 666533 3444444578999999996633336665444
No 162
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.34 E-value=1.6e-12 Score=125.10 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHhhC-CCeEEEecccccCChhHH--------HHHHHHHHHhcc--ccEEEEeeecccc-----------
Q psy3001 353 GQRQLICLARALLRK-TKILILDEATAAIDLETD--------DLIQSTIRSEFA--HCTVLTIAHRLNT----------- 410 (602)
Q Consensus 353 Gq~Qrl~lAral~~~-p~iliLDEpts~LD~~~~--------~~i~~~l~~~~~--~~tvi~itH~l~~----------- 410 (602)
.|+|+++.+|+++.+ |+++|+||||+.+|+... ..+.+.|+.+.+ ++|+|+++|....
T Consensus 90 ~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~ 169 (220)
T 2cvh_A 90 EQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAE 169 (220)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCC
T ss_pred HHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCC
Confidence 357899999999986 999999999999997432 234444555432 7899999998763
Q ss_pred --ccc-CCeEEEEeCc
Q psy3001 411 --IID-SDRVLVLDKG 423 (602)
Q Consensus 411 --i~~-~d~i~~l~~G 423 (602)
+.. ||++++|+..
T Consensus 170 ~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 170 QTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHTSSEEEEEEEC
T ss_pred cceeecCcEEEEEEEe
Confidence 344 9999999754
No 163
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.34 E-value=1.1e-13 Score=125.80 Aligned_cols=72 Identities=21% Similarity=0.196 Sum_probs=61.0
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++||++++|++++|+|+||||||||+++|+|++ |++|+|.++|.++... ...+ .+++|++.+|.-|+.+|+.
T Consensus 25 ~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIYHFDLYRLADPEELE 96 (158)
T ss_dssp HHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEEEEECTTCSCTTHHH
T ss_pred ccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---CcceeccccccCCcHHHHH
Confidence 489999999999999999999999999999999 9999999999877421 1112 2899999888668988873
No 164
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.34 E-value=5.1e-13 Score=127.55 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=42.6
Q ss_pred CcCCCChhhHHH-HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh
Q psy3001 346 ETVTGNVGQRQL-ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE 395 (602)
Q Consensus 346 ~~lsgs~Gq~Qr-l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 395 (602)
+.+| +||+|| +..+++++.+|+.+++|||||++|+.....+.+.+.+.
T Consensus 148 D~~s--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 148 DKLA--SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp GGSC--HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred cCCC--chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 3455 699999 89999999999999999999999999999999888765
No 165
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.33 E-value=2.3e-13 Score=142.78 Aligned_cols=55 Identities=5% Similarity=0.109 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHhhCCC---eEEEeccc-ccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 353 GQRQLICLARALLRKTK---ILILDEAT-AAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~---iliLDEpt-s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
+++||++||||++++|+ +|++|||| ++||+....++ +.+..+.++|+|.|+.+.+
T Consensus 122 ~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~l----k~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 122 YLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM----KRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp HTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHH----HHHTTTSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHH----HHHhccCcEEEEEEcccCc
Confidence 67889999999999999 99999999 68998774333 3334578899999987764
No 166
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.31 E-value=1.4e-13 Score=142.75 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=86.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceec-ccchhhhhhccCCceeEeeecccce
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP-QVLATIFVICYSTPVFIFVIVPVSV 291 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~-Q~~~~~~~~~~~~~~~~~~~~~~~~ 291 (602)
+.++|+|+||||||||+++|+|+++|++|.|.++|. .++.....++.+++++ |++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~~~~~~~~~v~~v~~q~~~--------------------- 232 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PELFLPDHPNHVHLFYPSEAK--------------------- 232 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCCCCTTCSSEEEEECC-------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cccCccccCCEEEEeecCccc---------------------
Confidence 889999999999999999999999999999999874 3333333445556665 4200
Q ss_pred eeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeE
Q psy3001 292 LYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKIL 371 (602)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~il 371 (602)
.. .+ ++..++-.|++++..+|+.+
T Consensus 233 -------------------------------------~~-----------------~~--~~~t~~~~i~~~l~~~pd~~ 256 (361)
T 2gza_A 233 -------------------------------------EE-----------------EN--APVTAATLLRSCLRMKPTRI 256 (361)
T ss_dssp --------------------------------------------------------------CCHHHHHHHHTTSCCSEE
T ss_pred -------------------------------------cc-----------------cc--cccCHHHHHHHHHhcCCCEE
Confidence 00 00 25567888999999999999
Q ss_pred EEecccccCChhHHHHHHHHHHHhccc-cEEEEeeecccccccCCeEEEEeCc
Q psy3001 372 ILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIIDSDRVLVLDKG 423 (602)
Q Consensus 372 iLDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~l~~i~~~d~i~~l~~G 423 (602)
++||+... ...+.++.+..| .|++...|..+....+||+..+..+
T Consensus 257 l~~e~r~~-------~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 257 LLAELRGG-------EAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp EESCCCST-------HHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred EEcCchHH-------HHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 99999752 233445555444 5788899986643336776655543
No 167
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.31 E-value=6.3e-14 Score=142.93 Aligned_cols=155 Identities=20% Similarity=0.185 Sum_probs=91.0
Q ss_pred ceEEEEeccCCChhHHHHHHhccc--------CCCCceEEECCeecCCCC---------------hHHHhhcccee---c
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII--------EPADGTIIIDGVDIRTLG---------------LHTLRSRLTII---P 266 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~--------~~~~G~I~i~g~~~~~~~---------------~~~~~~~i~~v---~ 266 (602)
++++|+|+||||||||++.|.|.. .|+.|+|.+||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999997 789999999999887653 23455666666 4
Q ss_pred ccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchh-HHHHHHHHHHHH--HHh----hcccCC
Q psy3001 267 QVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL-QRFYVATSRQLK--RLE----SVSRSP 339 (602)
Q Consensus 267 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~l~----~~~~~~ 339 (602)
|.+... + ...+..+..+. ....+ ..+.. .+.... .+. .+....
T Consensus 85 q~~~~~----------~-------------~~~v~E~~~l~------~p~~~~~~~~~-~~~~~~~~~l~~~l~~vd~~~ 134 (318)
T 1nij_A 85 DKGNIQ----------F-------------DRLVIECTGMA------DPGPIIQTFFS-HEVLCQRYLLDGVIALVDAVH 134 (318)
T ss_dssp HHTSCC----------C-------------SEEEEEEETTC------CHHHHHHHHHH-SHHHHHHEEEEEEEEEEETTT
T ss_pred hcCCCC----------C-------------CEEEEeCCCCC------CHHHHHHHHhc-CccccCeEEECCEEEEEEHHH
Confidence 542110 0 00111110000 00000 00000 000000 000 000001
Q ss_pred cccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 340 IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 340 ~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
..... ..+| +||+||+..+++++.+|+++ ||| ..+.+.+++...+.+|++++|+...+
T Consensus 135 ~~~~~-~~ls--~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 135 ADEQM-NQFT--IAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDL 192 (318)
T ss_dssp HHHHH-HHCH--HHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCG
T ss_pred HHHHH-hhch--HHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCH
Confidence 00000 1234 69999999888888888887 887 56677777776789999999975433
No 168
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.30 E-value=1.1e-12 Score=125.97 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=91.0
Q ss_pred ecCCceEEEEeccCCChhHHHHHHhcccCC--CCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeee
Q psy3001 209 REGLELVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVI 286 (602)
Q Consensus 209 ~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~--~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~ 286 (602)
++| ++++|+||||||||||+++|+|+++| ..|.|.+.+.+... ..++.++|++|++..+.....
T Consensus 14 ~~G-~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~--------- 79 (219)
T 1s96_A 14 AQG-TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMIS--------- 79 (219)
T ss_dssp -CC-CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHH---------
T ss_pred CCC-cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHh---------
Confidence 445 99999999999999999999999986 68999888765532 124578899886432110000
Q ss_pred cccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhh
Q psy3001 287 VPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLR 366 (602)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~ 366 (602)
.+.+.. . ....+ ...| -.++. ++.++.
T Consensus 80 ----------~~~f~E-------------------------------~------~~~~~-~~yg--~~~~~---v~~~l~ 106 (219)
T 1s96_A 80 ----------RDAFLE-------------------------------H------AEVFG-NYYG--TSREA---IEQVLA 106 (219)
T ss_dssp ----------TTCEEE-------------------------------E------EEETT-EEEE--EEHHH---HHHHHT
T ss_pred ----------cCHHHH-------------------------------H------HHHHh-ccCC--CCHHH---HHHHHh
Confidence 000000 0 00000 0010 11211 344556
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHh
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
.++++||| ||+.+...+.+.+. ++.||++++|+++.+.. |+ +.+| .++++++.
T Consensus 107 ~G~illLD-----LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 107 TGVDVFLD-----IDWQGAQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp TTCEEEEE-----CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred cCCeEEEE-----ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 68999999 99999998887765 57899999999998765 32 4445 34555543
No 169
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.28 E-value=2.4e-13 Score=135.02 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=42.2
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcccCCC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLDPV 563 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~~~ 563 (602)
.+||+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++|++.++.. ||.+|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 489999999999999999999999999999999987743 2346789999999988765 999998654
No 170
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.28 E-value=1.1e-12 Score=126.30 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=61.8
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh-hhhhccceEecCCcccccc------
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDPVLFSG------ 554 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp~lf~~------ 554 (602)
+.++||++++|+++||+||||||||||+++|+|++ | |+|.+ |.++...++ ...+++++|+||+|.+|..
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNED 88 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTC
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccc
Confidence 44799999999999999999999999999999999 5 99999 887765543 3456789999999977743
Q ss_pred -----chhcccCCCCCCcHHHHHHHHHHcC
Q psy3001 555 -----TLRLNLDPVGESSDEAIWKALELAH 579 (602)
Q Consensus 555 -----Tv~~nl~~~~~~~~~~i~~al~~~~ 579 (602)
++..|.. ..++++++++++...
T Consensus 89 ~l~~~~~~~~~~---g~~~~~i~~~l~~~~ 115 (218)
T 1z6g_A 89 FLEYDNYANNFY---GTLKSEYDKAKEQNK 115 (218)
T ss_dssp EEEEEEETTEEE---EEEHHHHHHHHHTTC
T ss_pred hhhhhhcccccC---CCcHHHHHHHHhCCC
Confidence 2222311 123566777777644
No 171
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.24 E-value=1e-12 Score=125.11 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=45.2
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
++||++||+||||||||||+++|+|+ +|++|+|. +.++. .+....+++++||||+|
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~-~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILT-RPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEE-ECSCCTTCCCCSSCC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEec-CCchhhhcceEEecCCH
Confidence 78999999999999999999999999 99999994 33333 22234577899999998
No 172
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.24 E-value=2.5e-12 Score=130.05 Aligned_cols=102 Identities=15% Similarity=0.017 Sum_probs=68.4
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEE---CCeecCCCChhhhhccceEecCCcc-------------
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII---DGVDIRTLGLHTLRSRLTIIPQDPV------------- 550 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i---~g~~i~~~~~~~lr~~i~~V~Qdp~------------- 550 (602)
|++..|++++|+|+||||||||+++|+|+.+|++|+|.+ +|+++.........+.++||+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 445678999999999999999999999999999999999 8988876543222246999999984
Q ss_pred ---cccc-chhcccCCCC----CCcHHHHHHHHHHcCCC-cccccccc
Q psy3001 551 ---LFSG-TLRLNLDPVG----ESSDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 551 ---lf~~-Tv~~nl~~~~----~~~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
+|.. |+ +|+.... ...++++.++|+.++|. +..++.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 3544 77 8876421 23456799999999995 55554443
No 173
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.22 E-value=2.4e-13 Score=144.74 Aligned_cols=92 Identities=15% Similarity=0.022 Sum_probs=71.2
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCc-e-EEECCeecCCCChhhhhccceEecCCccccc----cchh
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG-T-IIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS----GTLR 557 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G-~-I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~----~Tv~ 557 (602)
+++|++++|++++|+||||||||||+|+|+|+++|++| + |.+||. .+++++|+||++.+|. .|++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCCeeeeccchhhcccccccchh
Confidence 37889999999999999999999999999999999999 9 999981 3678999999996653 3888
Q ss_pred cccCCCC----CCcHHHHHHHHHHcCCCccc
Q psy3001 558 LNLDPVG----ESSDEAIWKALELAHLNTFV 584 (602)
Q Consensus 558 ~nl~~~~----~~~~~~i~~al~~~~l~~~~ 584 (602)
+|+.+.. ...++++.++++.+|+.++.
T Consensus 201 eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~ 231 (460)
T 2npi_A 201 LPTWGQSLTSGATLLHNKQPMVKNFGLERIN 231 (460)
T ss_dssp CTTCSCBCBSSCCSSCCBCCEECCCCSSSGG
T ss_pred hhhcccccccCcchHHHHHHHHHHhCCCccc
Confidence 8872111 11223455666667766543
No 174
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.21 E-value=2.1e-11 Score=127.06 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=62.9
Q ss_pred ChhhHHHH------HHHHHHhhC-CCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEe
Q psy3001 351 NVGQRQLI------CLARALLRK-TKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 351 s~Gq~Qrl------~lAral~~~-p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
|+||+||+ ++||++..+ |++|||||||++||+.....+.+.++....+.+||++||+++....||++++++
T Consensus 282 S~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 282 SGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence 47999988 667999999 999999999999999999999999988755679999999987544499999997
No 175
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.21 E-value=3.3e-11 Score=117.59 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=31.9
Q ss_pred ceEEEEeccCCChhHHHHHHhc--ccCC-----CCceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR--IIEP-----ADGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g--~~~~-----~~G~I~i~g~~ 249 (602)
++++|+|+||||||||++.+++ ..+| ..|.+++++.+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 8999999999999999999999 4555 57788888764
No 176
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.19 E-value=6.7e-12 Score=117.94 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=39.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
++++|+|+|||||||++++|+|. |+.|.|.++|.++..... .++.+++++|.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~ 61 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQS 61 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccch
Confidence 89999999999999999999998 788999999876532110 12335666664
No 177
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.19 E-value=2.7e-11 Score=125.49 Aligned_cols=139 Identities=18% Similarity=0.261 Sum_probs=75.1
Q ss_pred EEEEeccCCChhHHHHHHhc-ccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceee
Q psy3001 215 VGIVGRTGAGKSSLTLALFR-IIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLY 293 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g-~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (602)
+.|+||+|+||||+++++++ ++.|..|.+.++|.+.... ...+..+++++|. +++..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~--~~~~~~~~~~~~~-----------~~~~~--------- 96 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA--SNRKLELNVVSSP-----------YHLEI--------- 96 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECS-----------SEEEE---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc--ccccceeeeeccc-----------ceEEe---------
Confidence 89999999999999999999 8899999999999776432 2225667777764 11110
Q ss_pred eccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEE
Q psy3001 294 FFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILIL 373 (602)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliL 373 (602)
+..... ... . ....+..+.+.. ..+ ..... .+| | +..+|+++|+
T Consensus 97 ---------~~~~~~-----~~~---~--~~~~~~i~~~~~--~~~-~~~~~-~ls---~----------l~~~~~vlil 140 (354)
T 1sxj_E 97 ---------TPSDMG-----NND---R--IVIQELLKEVAQ--MEQ-VDFQD-SKD---G----------LAHRYKCVII 140 (354)
T ss_dssp ---------CCC---------CC---H--HHHHHHHHHHTT--TTC---------------------------CCEEEEE
T ss_pred ---------cHhhcC-----Ccc---h--HHHHHHHHHHHH--hcc-ccccc-ccc---c----------cCCCCeEEEE
Confidence 000000 000 0 001111111100 000 00000 223 2 6789999999
Q ss_pred ecccccCChhHHHHHHHHHHHhccccEEEEeeecccccc
Q psy3001 374 DEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412 (602)
Q Consensus 374 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~ 412 (602)
|||++ ||+.+...+.+.+.+...++++|++||+++.+.
T Consensus 141 DE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~ 178 (354)
T 1sxj_E 141 NEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 178 (354)
T ss_dssp ECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred eCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHH
Confidence 99999 999999999999988777789999999987664
No 178
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.19 E-value=3.8e-12 Score=128.31 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=62.7
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh----hhh--hccceEecCCcc-ccc-cc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTL--RSRLTIIPQDPV-LFS-GT 555 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~----~~l--r~~i~~V~Qdp~-lf~-~T 555 (602)
.++|++++|++++|+|+|||||||+++.|+|+++|++|+|.++|.|+..... ..+ |.+++||+|++. ++. .|
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~ 171 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 171 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHH
Confidence 4788999999999999999999999999999999999999999988765431 222 457999999987 654 37
Q ss_pred hhccc
Q psy3001 556 LRLNL 560 (602)
Q Consensus 556 v~~nl 560 (602)
+++|+
T Consensus 172 v~e~l 176 (302)
T 3b9q_A 172 LSKAV 176 (302)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77775
No 179
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.18 E-value=3e-13 Score=127.20 Aligned_cols=77 Identities=14% Similarity=0.048 Sum_probs=54.7
Q ss_pred hhhHHHHHHHH------HHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeec-cccccc-CCeEEEEeC
Q psy3001 352 VGQRQLICLAR------ALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHR-LNTIID-SDRVLVLDK 422 (602)
Q Consensus 352 ~Gq~Qrl~lAr------al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~-l~~i~~-~d~i~~l~~ 422 (602)
+|++|++.++. ++..+|+...+|+ ++|+..... ++.++... .+.++|..+|. ++.+.. ||+|+ ++
T Consensus 97 ~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~ 170 (189)
T 2bdt_A 97 KVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TN 170 (189)
T ss_dssp HCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HC
T ss_pred cccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hC
Confidence 46777777777 8888888888884 789887777 77776654 35799999999 999988 99998 99
Q ss_pred ceEEeecChhHH
Q psy3001 423 GLVVEFDSPSVL 434 (602)
Q Consensus 423 G~i~~~g~~~~l 434 (602)
|+++..|+++-+
T Consensus 171 g~~~~~~~~~~~ 182 (189)
T 2bdt_A 171 PRFIFCMAGDPL 182 (189)
T ss_dssp GGGSCC------
T ss_pred CcEEEeecCCch
Confidence 999988877654
No 180
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.16 E-value=6.9e-12 Score=130.38 Aligned_cols=90 Identities=24% Similarity=0.257 Sum_probs=74.3
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCC-CceEEECCeecCCCChhhhhccceEecC-----Cccccccchhccc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDGVDIRTLGLHTLRSRLTIIPQ-----DPVLFSGTLRLNL 560 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~-~G~I~i~g~~i~~~~~~~lr~~i~~V~Q-----dp~lf~~Tv~~nl 560 (602)
+.+++|+.++|+||||||||||+++|+|+++|+ +|+|.+.|.++.. .++..+++|+| +|..|..+++.|+
T Consensus 131 l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~----~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 131 LCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY----VFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp HTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS----CCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh----hhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 347899999999999999999999999999998 8999877765542 35678999999 8889999999998
Q ss_pred CCCCCC-------cHHHHHHHHHHcCC
Q psy3001 561 DPVGES-------SDEAIWKALELAHL 580 (602)
Q Consensus 561 ~~~~~~-------~~~~i~~al~~~~l 580 (602)
...++. +.+.++.+++.++.
T Consensus 207 ~~~pd~illdE~~d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLETVETALRAAET 233 (372)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHHTT
T ss_pred hhCcCEEEECCCCCHHHHHHHHHHHhc
Confidence 754443 66778888887764
No 181
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.16 E-value=3.6e-11 Score=127.93 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=64.5
Q ss_pred ChhhHHHHHHHHHHh----hCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeecccccccCCeEEEEe
Q psy3001 351 NVGQRQLICLARALL----RKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 351 s~Gq~Qrl~lAral~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
|+|||||++||++|+ .+|+++||||||++||+.....+.+.++.... +.++|+|||+...+..||+++++.
T Consensus 335 S~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 335 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred CcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 579999999999999 57999999999999999999999999988754 689999999987776799999986
No 182
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.15 E-value=4.4e-12 Score=132.61 Aligned_cols=90 Identities=19% Similarity=0.136 Sum_probs=70.1
Q ss_pred cceeeEEecce--------------------eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccc
Q psy3001 483 GLVGLSVSYAM--------------------QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL 542 (602)
Q Consensus 483 ~~~~l~i~~Ge--------------------~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 542 (602)
.+++|++++|+ ++||+|+||||||||+|+|+|+++|++|+|.++|.++. | .
T Consensus 40 ~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~--~ 110 (413)
T 1tq4_A 40 NLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M--E 110 (413)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C--C
T ss_pred hhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e--e
Confidence 35788888888 99999999999999999999999999999999997653 1 2
Q ss_pred eEecCCccccccchhcccCCCCCCcHHHHHHHHHHcCCCcc
Q psy3001 543 TIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTF 583 (602)
Q Consensus 543 ~~V~Qdp~lf~~Tv~~nl~~~~~~~~~~i~~al~~~~l~~~ 583 (602)
++++|++....-|+++|+.... .++++.++++.+++.++
T Consensus 111 ~~v~q~~~~~~ltv~D~~g~~~--~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 111 RHPYKHPNIPNVVFWDLPGIGS--TNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp CEEEECSSCTTEEEEECCCGGG--SSCCHHHHHHHTTGGGC
T ss_pred EEeccccccCCeeehHhhcccc--hHHHHHHHHHHcCCCcc
Confidence 8899997544568988876432 23457888898888764
No 183
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.15 E-value=1.2e-11 Score=118.00 Aligned_cols=70 Identities=16% Similarity=0.065 Sum_probs=49.8
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
.++.+||++||+||||||||||+++|+|+++ +|.+++......+....+++++|+||++.+|.. |+.+|+
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence 6899999999999999999999999999996 455554222222222346789999999987754 666665
No 184
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.14 E-value=5e-12 Score=119.72 Aligned_cols=81 Identities=25% Similarity=0.296 Sum_probs=66.9
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccC-------------CCCceEEECCeecCCCChhhhhccceEecCCccccccch
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIE-------------PADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~-------------~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv 556 (602)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|++++|.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 4788999999999999999999999986 78887 588888888888888765 79999999999
Q ss_pred hcccCCCCCCcHHHHHHHHHHc
Q psy3001 557 RLNLDPVGESSDEAIWKALELA 578 (602)
Q Consensus 557 ~~nl~~~~~~~~~~i~~al~~~ 578 (602)
..|+.. .++++++++++..
T Consensus 77 ~~n~~g---~~~~~i~~~~~~~ 95 (198)
T 1lvg_A 77 SGNLYG---TSKEAVRAVQAMN 95 (198)
T ss_dssp TTEEEE---EEHHHHHHHHHTT
T ss_pred cCccCC---CCHHHHHHHHHcC
Confidence 999832 3778899998764
No 185
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.13 E-value=1.7e-11 Score=124.03 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=61.8
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccCCCC--C
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPVG--E 565 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~~~~--~ 565 (602)
++++|+++||+|+||||||||+++|+|+++|+.|. +++++|+||+++++.|+++|+.... .
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g 148 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKG 148 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTT
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcC
Confidence 37899999999999999999999999999997663 4699999999999889999985321 1
Q ss_pred ----CcHHHHHHHHHHcC
Q psy3001 566 ----SSDEAIWKALELAH 579 (602)
Q Consensus 566 ----~~~~~i~~al~~~~ 579 (602)
...+.+.+.++.++
T Consensus 149 ~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 149 FPESYNRRALMRFVTSVK 166 (312)
T ss_dssp SGGGBCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhC
Confidence 23456777887776
No 186
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.12 E-value=1.2e-11 Score=127.04 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=64.0
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh----hhh--hccceEecCCcc-ccc-cc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTL--RSRLTIIPQDPV-LFS-GT 555 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~----~~l--r~~i~~V~Qdp~-lf~-~T 555 (602)
.++|++++|++++|+|+|||||||+++.|+|+++|++|+|.++|.|+..... ..+ |.+++|++|++. ++. .|
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 4788999999999999999999999999999999999999999988765421 122 457999999987 553 47
Q ss_pred hhccc
Q psy3001 556 LRLNL 560 (602)
Q Consensus 556 v~~nl 560 (602)
+++|+
T Consensus 229 v~e~l 233 (359)
T 2og2_A 229 LSKAV 233 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
No 187
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.11 E-value=2.4e-12 Score=133.93 Aligned_cols=103 Identities=13% Similarity=0.151 Sum_probs=77.3
Q ss_pred ceeeEEec--ceeEEEECCCCCChHHHHHHHHhccCCCC----ceEEEC----CeecCCCChhhhhccceEecCCccccc
Q psy3001 484 LVGLSVSY--AMQVGIVGRTGAGKSSLTLALFRIIEPAD----GTIIID----GVDIRTLGLHTLRSRLTIIPQDPVLFS 553 (602)
Q Consensus 484 ~~~l~i~~--Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~----G~I~i~----g~~i~~~~~~~lr~~i~~V~Qdp~lf~ 553 (602)
.+++++.+ |++++|+|+||||||||+++|+|+++|++ |+|.++ |.++ ..+..++ ++|++++|++.+|.
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~~~ 237 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYIDYA 237 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHHHH
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHHHH
Confidence 58999999 99999999999999999999999999999 998873 5555 4445555 56999999999999
Q ss_pred cchhcccCCCCC-CcHHHHHHHHHHcCCCccccccc
Q psy3001 554 GTLRLNLDPVGE-SSDEAIWKALELAHLNTFVSNLP 588 (602)
Q Consensus 554 ~Tv~~nl~~~~~-~~~~~i~~al~~~~l~~~~~~~~ 588 (602)
.|+++|+..... ..+......+.......++.+.+
T Consensus 238 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 273 (365)
T 1lw7_A 238 VRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMI 273 (365)
T ss_dssp HHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHH
Confidence 999999864332 23344444444444444444433
No 188
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.11 E-value=1.5e-10 Score=120.82 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=36.9
Q ss_pred ceEEEEeccCCChhHHHH--HHhcccCCCCc-----eEEECCeecC-CCChHHHhhccceecc
Q psy3001 213 ELVGIVGRTGAGKSSLTL--ALFRIIEPADG-----TIIIDGVDIR-TLGLHTLRSRLTIIPQ 267 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~--ll~g~~~~~~G-----~I~i~g~~~~-~~~~~~~~~~i~~v~Q 267 (602)
++++|+|+||||||||++ ++.+..+++.| .+++++.+.. ......+.+.+++.+|
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence 899999999999999999 44577766444 7888876531 1112233455555544
No 189
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.10 E-value=2.6e-10 Score=116.00 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=46.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH----Hhhccc--eeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT----LRSRLT--IIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~----~~~~i~--~v~Q~ 268 (602)
++++|+|+|||||||+++.|+|++.|++|+|.+.|.|+......+ +++.++ +++|.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~ 191 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHS 191 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecc
Confidence 899999999999999999999999999999999999987665432 344444 66664
No 190
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.09 E-value=8.2e-11 Score=109.46 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=38.6
Q ss_pred hhCCCeEEEecccc-cCChhHHHHHHHHHHHhc-cccEEEEeeecccc
Q psy3001 365 LRKTKILILDEATA-AIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNT 410 (602)
Q Consensus 365 ~~~p~iliLDEpts-~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~ 410 (602)
+.+|++|+||||++ ++|+.....+.+.+.... .++++|++||....
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 55999999999985 899999888888887654 57899999998643
No 191
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.08 E-value=4.1e-11 Score=125.14 Aligned_cols=171 Identities=15% Similarity=0.086 Sum_probs=90.5
Q ss_pred EeeeEEEEecCCce--EEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 201 FKDYKVRYREGLEL--VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 201 ~~~vs~~~~~~~e~--~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
++++||++.+| ++ ++|+|+||||||||+++|+|+. ++|.++....+...++.+++++|++...
T Consensus 30 L~~vsl~i~~G-ei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~------ 94 (427)
T 2qag_B 30 DQLVNKSVSQG-FCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVR------ 94 (427)
T ss_dssp HHHHHHSCC-C-CEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CE------
T ss_pred cCCCceEecCC-CeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCccc------
Confidence 89999999998 99 9999999999999999999984 3444444333333456789999873210
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHH-HHHHHHHHHHhhccc------C-C---cc---ccc
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFY-VATSRQLKRLESVSR------S-P---IY---SHF 344 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~------~-~---~~---~~~ 344 (602)
+.+.. ..+..+...+... ........+. ....+.+........ + . .+ ...
T Consensus 95 -~~ltv------------~D~~~~g~~~~~~---~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~ 158 (427)
T 2qag_B 95 -LKLTI------------VSTVGFGDQINKE---DSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPT 158 (427)
T ss_dssp -EEEEE------------EEEECCCC-CCHH---HHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCC
T ss_pred -cccch------------hhhhhhhhccccc---hhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCC
Confidence 00000 0000000000000 0000000010 111111111100010 0 0 00 011
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHH-hc-cccEEEEeeec
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS-EF-AHCTVLTIAHR 407 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~ 407 (602)
+..++ ..-+.++++|..+++++++|+|+..|.+.....+.+.+++ +. .|.+|+.++.+
T Consensus 159 ~~~l~-----~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 159 GHSLK-----SLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp C---C-----HHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCC-----HHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 11111 2238999999999999999999999998888888888876 43 47889988864
No 192
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.07 E-value=2.5e-11 Score=128.31 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=63.3
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC----hh--hhhccceEecCCcccc-ccch
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG----LH--TLRSRLTIIPQDPVLF-SGTL 556 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~----~~--~lr~~i~~V~Qdp~lf-~~Tv 556 (602)
+++|++.+|++++|+|+||||||||+++|+|++++++|+|.++|.|+.... .. ..|++++||+|++.++ ..|+
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV 364 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 364 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHH
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHH
Confidence 588999999999999999999999999999999999999999887765421 11 2367899999998654 3477
Q ss_pred hccc
Q psy3001 557 RLNL 560 (602)
Q Consensus 557 ~~nl 560 (602)
++|+
T Consensus 365 ~e~l 368 (503)
T 2yhs_A 365 FDAI 368 (503)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
No 193
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.07 E-value=2.2e-11 Score=120.24 Aligned_cols=86 Identities=24% Similarity=0.220 Sum_probs=64.2
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccCCC-CceEEECCeecCCCChhhhhccceEecC-----CccccccchhcccCC
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDGVDIRTLGLHTLRSRLTIIPQ-----DPVLFSGTLRLNLDP 562 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~-~G~I~i~g~~i~~~~~~~lr~~i~~V~Q-----dp~lf~~Tv~~nl~~ 562 (602)
+++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++| ++..|..+++.++..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFADALRAALRE 97 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999998 999999998876543 334678888 555565566666532
Q ss_pred CC-------CCcHHHHHHHHHHc
Q psy3001 563 VG-------ESSDEAIWKALELA 578 (602)
Q Consensus 563 ~~-------~~~~~~i~~al~~~ 578 (602)
.+ ..+.+.++.+++.+
T Consensus 98 ~p~illlDEp~D~~~~~~~l~~~ 120 (261)
T 2eyu_A 98 DPDVIFVGEMRDLETVETALRAA 120 (261)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCHHHHHHHHHHH
Confidence 11 11455566666544
No 194
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.05 E-value=7e-11 Score=112.22 Aligned_cols=71 Identities=20% Similarity=0.112 Sum_probs=55.9
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
|+++.+|++++|+||||||||||+++|+|+++ .+.+++.++...+....+.+++|++|++..|.. ++.+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 46778999999999999999999999999974 688888888776666667889999999987754 444443
No 195
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.04 E-value=2.8e-10 Score=102.34 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=31.8
Q ss_pred hhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccE-EEEeeec
Q psy3001 365 LRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCT-VLTIAHR 407 (602)
Q Consensus 365 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t-vi~itH~ 407 (602)
+.+|++|+||||++ ++...++.+.+.+.... .+++ +|++||.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 45799999999998 66555778888887754 3577 7777775
No 196
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.03 E-value=9.2e-11 Score=118.18 Aligned_cols=70 Identities=17% Similarity=0.071 Sum_probs=57.3
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh-h---hh--hccceEecCCcccccc-chhccc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-H---TL--RSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~-~---~l--r~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+|++++|+||||||||||+++|+|+++|++|+|.++|.|+..... + .+ |.+++||+|++.+++. |+++|+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 689999999999999999999999999999999999999865442 2 22 4579999999876543 555543
No 197
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.03 E-value=6.7e-11 Score=119.45 Aligned_cols=100 Identities=13% Similarity=-0.013 Sum_probs=67.6
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEE---CCeecCCCChhhhhccceEecCCccc-----c-ccchhc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII---DGVDIRTLGLHTLRSRLTIIPQDPVL-----F-SGTLRL 558 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i---~g~~i~~~~~~~lr~~i~~V~Qdp~l-----f-~~Tv~~ 558 (602)
++..|++++++|+||||||||+++|+ +.+|++|+|.+ +|+++...+.....+.++||+|+|-+ | .-|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 34468899999999999999999999 99999999999 89887654322112369999999943 2 3367 6
Q ss_pred cc--CC----------CC----CCcHHHHHHHHHHcCCCc-ccccccc
Q psy3001 559 NL--DP----------VG----ESSDEAIWKALELAHLNT-FVSNLPA 589 (602)
Q Consensus 559 nl--~~----------~~----~~~~~~i~~al~~~~l~~-~~~~~~~ 589 (602)
|+ .. .+ ....+.+.++++.++|.+ ..++.|.
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 286 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK 286 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence 76 21 11 123467999999999986 4444433
No 198
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.02 E-value=4.2e-11 Score=114.97 Aligned_cols=86 Identities=20% Similarity=0.107 Sum_probs=63.0
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCC--CCceEEECCeecCCCChhhhhccceEecCCcccccc-ch----hccc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TL----RLNL 560 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~--~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv----~~nl 560 (602)
..++|+.++|+||||||||||+++|+|+++| ..|+|.+.+.+... ..+++++|+||++.+|.. ++ .+|+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 4678999999999999999999999999986 68888888755322 235689999999988865 55 5666
Q ss_pred CCCCC---CcHHHHHHHHHH
Q psy3001 561 DPVGE---SSDEAIWKALEL 577 (602)
Q Consensus 561 ~~~~~---~~~~~i~~al~~ 577 (602)
..... .+.+++.++++.
T Consensus 88 ~~~~~~yg~~~~~v~~~l~~ 107 (219)
T 1s96_A 88 EVFGNYYGTSREAIEQVLAT 107 (219)
T ss_dssp EETTEEEEEEHHHHHHHHTT
T ss_pred HHHhccCCCCHHHHHHHHhc
Confidence 43221 245567776653
No 199
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.01 E-value=2.4e-11 Score=124.58 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=54.4
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh----HHHhhccceecccch
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTLRSRLTIIPQVLA 270 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~----~~~~~~i~~v~Q~~~ 270 (602)
+++++++..++ ++++|+|+||||||||+++|+|++.|++|+|.+.|.++..... ...+..+++++|++.
T Consensus 45 l~~i~~~~~~g-~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 45 IDAVLPQTGRA-IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 117 (337)
T ss_dssp HHHHGGGCCCS-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT
T ss_pred HHhCCcccCCC-eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcc
Confidence 33444444444 8999999999999999999999999999999999988754321 234678999999754
No 200
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.99 E-value=2.2e-12 Score=126.69 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=34.3
Q ss_pred ceEEEEeccCCChhHHHHHHh---cccCCCCceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALF---RIIEPADGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~---g~~~~~~G~I~i~g~~ 249 (602)
++++|+|+|||||||++++|+ |+..|+.|+|.++|.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 789999999999999999999 9999999999887654
No 201
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.98 E-value=8.1e-12 Score=119.28 Aligned_cols=38 Identities=29% Similarity=0.544 Sum_probs=32.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC---CCceEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP---ADGTIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~---~~G~I~i~g~~~ 250 (602)
++++|+|+||||||||+++|+|+++| ..|.|.+||..+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 89999999999999999999999986 467777766543
No 202
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.98 E-value=2.8e-10 Score=120.27 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=52.1
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC------hHHHhhccceeccc
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG------LHTLRSRLTIIPQV 268 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~------~~~~~~~i~~v~Q~ 268 (602)
++||+..+| ++++|+|+||||||||+++|+|++.|++|+|.++|.+..... ....++.+++++|.
T Consensus 285 ~Isl~i~~G-eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~ 355 (503)
T 2yhs_A 285 PLNVEGKAP-FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQH 355 (503)
T ss_dssp CCCCCSCTT-EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCS
T ss_pred CceeeccCC-eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecc
Confidence 455655555 999999999999999999999999999999999877764321 11236789999986
No 203
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.98 E-value=7.2e-11 Score=121.03 Aligned_cols=70 Identities=26% Similarity=0.271 Sum_probs=61.5
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh----hhhhccceEecCCccccc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTLRSRLTIIPQDPVLFS 553 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~----~~lr~~i~~V~Qdp~lf~ 553 (602)
.++|++.+|++++|+|+||||||||+++|+|+++|++|+|.+.|.|+..... ...|+++++++|+|.+|.
T Consensus 47 ~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 47 AVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp HHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred hCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 5789999999999999999999999999999999999999999998865432 345778999999998874
No 204
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.98 E-value=1.8e-10 Score=117.89 Aligned_cols=96 Identities=18% Similarity=0.072 Sum_probs=65.7
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccC-CCCceEEEC-CeecCCCChhhhhccceEecCCcccccc-chhcccCCCCCCc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIE-PADGTIIID-GVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLDPVGESS 567 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~-~~~G~I~i~-g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~~~~~~~ 567 (602)
+|++++|+|+||||||||+++|+|+.+ |++|+|.++ |.+... ..+..++++||++.+++. ||+++... ..+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t----t~~~~i~~v~q~~~l~dtpgv~e~~l~--~l~ 287 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT----TTAARLYHFPHGGDVIDSPGVREFGLW--HLE 287 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCCCC--CCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc----eEEEEEEEECCCCEecCcccHHHhhhc--CCC
Confidence 688999999999999999999999999 999999987 765432 235679999999988754 88886322 223
Q ss_pred HHH----HHHHHHHcCCCccccccccCCC
Q psy3001 568 DEA----IWKALELAHLNTFVSNLPARLQ 592 (602)
Q Consensus 568 ~~~----i~~al~~~~l~~~~~~~~~~l~ 592 (602)
.++ +.++++.+++.+|.+..+..++
T Consensus 288 ~~e~~~~~~e~l~~~gl~~f~~~~~~~lS 316 (358)
T 2rcn_A 288 PEQITQGFVEFHDYLGHCKYRDCKHDADP 316 (358)
T ss_dssp HHHHHHTSGGGGGGTTCSSSTTCCSSSCT
T ss_pred HHHHHHHHHHHHHHcCCchhcCCCcccCC
Confidence 332 5677888888887776665553
No 205
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.97 E-value=6.2e-11 Score=125.46 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=61.4
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCe---ecCCCC-----hhhhhccceEecCC-cccc-c
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV---DIRTLG-----LHTLRSRLTIIPQD-PVLF-S 553 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~---~i~~~~-----~~~lr~~i~~V~Qd-p~lf-~ 553 (602)
.+ |++.+|++++|+|+||||||||+++|+|+.+|++|.|.++|+ ++.... ...+++.++|++|+ ...+ .
T Consensus 150 ~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~ 228 (438)
T 2dpy_A 150 AL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLR 228 (438)
T ss_dssp HH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHH
T ss_pred ee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHH
Confidence 58 999999999999999999999999999999999999999998 554321 34577889999995 3333 3
Q ss_pred cchhccc
Q psy3001 554 GTLRLNL 560 (602)
Q Consensus 554 ~Tv~~nl 560 (602)
-|+.+|+
T Consensus 229 ~~v~~~~ 235 (438)
T 2dpy_A 229 MQGAAYA 235 (438)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3666554
No 206
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.97 E-value=1.6e-10 Score=120.65 Aligned_cols=76 Identities=25% Similarity=0.140 Sum_probs=53.8
Q ss_pred ccceeeEEeccee--EEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccc-cchhc
Q psy3001 482 AGLVGLSVSYAMQ--VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS-GTLRL 558 (602)
Q Consensus 482 ~~~~~l~i~~Ge~--v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~-~Tv~~ 558 (602)
+.+++|++++|++ +||+|+||||||||+++|+|+. ++|.++....+...++.++|++|++.++. -||.+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D 101 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCccccccchhh
Confidence 3468999999999 9999999999999999999994 45555544444445668999999998774 49999
Q ss_pred ccCCCCC
Q psy3001 559 NLDPVGE 565 (602)
Q Consensus 559 nl~~~~~ 565 (602)
|+.....
T Consensus 102 ~~~~g~~ 108 (427)
T 2qag_B 102 TVGFGDQ 108 (427)
T ss_dssp EECCCC-
T ss_pred hhhhhhc
Confidence 9876544
No 207
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.95 E-value=6.9e-11 Score=116.31 Aligned_cols=100 Identities=23% Similarity=0.189 Sum_probs=73.4
Q ss_pred ecceeEEEECCCCCChHHHHHHHH---hccCCCCceEE--------ECCeecC-CCChhhhhccceEecCCc------cc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALF---RIIEPADGTII--------IDGVDIR-TLGLHTLRSRLTIIPQDP------VL 551 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~---g~~~~~~G~I~--------i~g~~i~-~~~~~~lr~~i~~V~Qdp------~l 551 (602)
.+|++++|+|++||||||++++|+ |+..+++|.+. .+|.++. .....++++++++++|++ ++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 678999999999999999999999 99999999998 8998884 445678899999999754 45
Q ss_pred cccchhcccCCCCCCcHHHHHHHHHHcCCCccccccccCCCccc
Q psy3001 552 FSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEV 595 (602)
Q Consensus 552 f~~Tv~~nl~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v 595 (602)
+..++.+|+. .+++..++..+.....+......+...+
T Consensus 105 ~~~~v~~~i~------~~~v~~~~s~~~~~~~vr~~l~~~~~~~ 142 (252)
T 4e22_A 105 EGEDVSNEIR------TETVGNTASQAAAFPRVREALLRRQRAF 142 (252)
T ss_dssp TTEECTTGGG------SHHHHHHHHHHTTSHHHHHHHHHHHHTT
T ss_pred CCeehhHHHH------HHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 5667777764 3455555555555444433333333333
No 208
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.95 E-value=2.3e-10 Score=121.52 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=56.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh--------hhccceEecCCcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT--------LRSRLTIIPQDPV 550 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~--------lr~~i~~V~Qdp~ 550 (602)
+.+++|++++ +++||+||||||||||+++|+|+++|++|+|.++|+++...+... ++..+.|+.+++.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 95 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVCYAVLETV 95 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGGSCSSEEEEEEEEE
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHhcCCCceEEEEehh
Confidence 3468999999 999999999999999999999999999999999999887654331 2234567766653
No 209
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.92 E-value=2.2e-10 Score=117.08 Aligned_cols=62 Identities=15% Similarity=0.272 Sum_probs=53.3
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 547 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q 547 (602)
.+++++++|+.++|+|+||||||||+++|+|+++|++|.|.++|.+ .+.....++.+++++|
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~g 224 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFFG 224 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEECB
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEeC
Confidence 4789999999999999999999999999999999999999999865 2333345677888875
No 210
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.92 E-value=2.8e-10 Score=111.47 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=45.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
+.++||++++|+++||+|+||||||||+++|+|++ |.+.++ ..++.++|++||++...-|+.+|+
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~~~ 79 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQKA 79 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHHHH
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhHhh
Confidence 45699999999999999999999999999999987 666554 346789999999733233676654
No 211
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.92 E-value=5e-10 Score=106.86 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=62.3
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc---chhccc--CCC
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG---TLRLNL--DPV 563 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~---Tv~~nl--~~~ 563 (602)
.++|+++||+|+||||||||+++|+|+++| +++||+||++++.. |++++. ...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 467899999999999999999999999864 58999999988743 455543 221
Q ss_pred --CCCcHHHHHHHHHHcCCCccccccccCCCccccC
Q psy3001 564 --GESSDEAIWKALELAHLNTFVSNLPARLQHEVSE 597 (602)
Q Consensus 564 --~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~ 597 (602)
.....+++.++++.+++.+.+.. | .+++..++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~ 94 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYT 94 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccC
Confidence 12345778999999998887765 3 34444444
No 212
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.90 E-value=2.4e-10 Score=114.83 Aligned_cols=95 Identities=19% Similarity=0.156 Sum_probs=57.1
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEE---CCeecCCCChhhhhccceEecCCccccc-----cchhc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII---DGVDIRTLGLHTLRSRLTIIPQDPVLFS-----GTLRL 558 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i---~g~~i~~~~~~~lr~~i~~V~Qdp~lf~-----~Tv~~ 558 (602)
+++.+|++++|+|+||||||||+++|+|+.+|++|+|.+ +|+++.+.. ...+..++|++|.|-++. -|+ +
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 556789999999999999999999999999999999998 787766532 222223899999996543 356 6
Q ss_pred ccC---C-----------C----CCCcHHHHHHHHHHcCCCcc
Q psy3001 559 NLD---P-----------V----GESSDEAIWKALELAHLNTF 583 (602)
Q Consensus 559 nl~---~-----------~----~~~~~~~i~~al~~~~l~~~ 583 (602)
|+. + . ....+..+.++++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 652 1 1 11234579999999999764
No 213
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.89 E-value=2.4e-10 Score=126.38 Aligned_cols=72 Identities=17% Similarity=0.280 Sum_probs=50.1
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCC-CCceEEECCeecCC--C-ChhhhhccceEecCCcccccc-chhccc
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEP-ADGTIIIDGVDIRT--L-GLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~-~~G~I~i~g~~i~~--~-~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+++++. +||+|+||||||||+++|+|++.| ++|+|.++|.++.. . ....++++++|+||++.+++. ||++|+
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEI 118 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTH
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHH
Confidence 455544 999999999999999999999988 79999999998632 2 235678899999999977654 777665
No 214
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.89 E-value=5.3e-10 Score=113.73 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=59.3
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh----hhcc--ceEecCCcccccc-chhccc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT----LRSR--LTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~----lr~~--i~~V~Qdp~lf~~-Tv~~nl 560 (602)
...+|++++|+|+|||||||+++.|+|+++|++|+|.++|.|+......+ ++++ +.+++|++.+++. |+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 34689999999999999999999999999999999999999987665422 2333 5599999877643 677665
No 215
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.88 E-value=1.2e-10 Score=105.61 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=43.9
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~ 251 (602)
.++++||++.+| ++++|+||||||||||+|+|+|++ |++|+|.++|.++.
T Consensus 22 ~l~~vsl~i~~G-e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 22 AEILLKLHTEKA-IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHHHHCCSSC-EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE
T ss_pred HHhccccccCCC-CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee
Confidence 355667777777 999999999999999999999999 99999999997764
No 216
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=98.87 E-value=2.9e-10 Score=106.39 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=47.5
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
|++++|+|+||||||||+++|+|+++ ++| |.++|.++... ..++++++|++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec
Confidence 68899999999999999999999999 999 99999887433 34678899999984
No 217
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.86 E-value=6.4e-09 Score=104.44 Aligned_cols=110 Identities=16% Similarity=0.118 Sum_probs=73.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeeccccee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVL 292 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (602)
++++++|+||+||||++..|++.+.+..|+|.+.+.|...- ... .|
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~--~~~-------~q------------------------- 144 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP--AAR-------EQ------------------------- 144 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH--HHH-------HH-------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH--hHH-------HH-------------------------
Confidence 89999999999999999999999999999999877654320 000 00
Q ss_pred eeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEE
Q psy3001 293 YFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILI 372 (602)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~ili 372 (602)
+.. ..+ ..+. +.... +... ...+.+|.+++++...+++++|
T Consensus 145 -------------------------l~~-------~~~---~~~l-~~~~~-~~~~--~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 145 -------------------------LRL-------LGE---KVGV-PVLEV-MDGE--SPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp -------------------------HHH-------HHH---HHTC-CEEEC-CTTC--CHHHHHHHHHHHHHHHTCCEEE
T ss_pred -------------------------HHH-------hcc---cCCe-EEEEc-CCCC--CHHHHHHHHHHHHHhCCCCEEE
Confidence 000 000 0000 00100 0000 1346678899999889999999
Q ss_pred Eecc-cccCChhHHHHHHHHHHHh
Q psy3001 373 LDEA-TAAIDLETDDLIQSTIRSE 395 (602)
Q Consensus 373 LDEp-ts~LD~~~~~~i~~~l~~~ 395 (602)
+||| ++++|......+....+..
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCccccHHHHHHHHHHhhhc
Confidence 9999 9999987777776665543
No 218
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.86 E-value=1.1e-09 Score=114.81 Aligned_cols=37 Identities=35% Similarity=0.347 Sum_probs=33.6
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
+-+++++.+..+ +.++|+|+||||||||+++|+|..+
T Consensus 146 ~~~~i~lelk~g-~~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 146 EKRRLRLELMLI-ADVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp CEEEEEEEECCS-CSEEEECCGGGCHHHHHHHHCSSCC
T ss_pred eEeeeeeEEcCC-CEEEEECCCCCcHHHHHHHHHcCCc
Confidence 458999999887 9999999999999999999999853
No 219
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.85 E-value=6.4e-10 Score=126.89 Aligned_cols=62 Identities=19% Similarity=0.215 Sum_probs=44.7
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
++.+.++..+.++||+|+|||||+++|++... .+-+.+++.++......+..+.+..++|.+
T Consensus 505 ~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a 566 (806)
T 1ypw_A 505 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLTMWFGESEANVREIFDKA 566 (806)
T ss_dssp CCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTTCCTTTSSHHHHHHHHHH
T ss_pred hcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhhhhcCccHHHHHHHHHHH
Confidence 55677889999999999999999999999985 456777776654433333334455566554
No 220
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.85 E-value=6e-11 Score=118.78 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=31.1
Q ss_pred ccCCcCCCChhhHHHHHHH--HHHhhCCCeEEEecccccCChhH
Q psy3001 343 HFGETVTGNVGQRQLICLA--RALLRKTKILILDEATAAIDLET 384 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lA--ral~~~p~iliLDEpts~LD~~~ 384 (602)
.++..+| |||+||+++| +++ +|+|+|+||+++++|+..
T Consensus 130 ~y~~~~s--gGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 130 KYDKSQF--KGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEETTHH--HHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred cCccccC--CccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 3445555 6999999998 555 999999999999999864
No 221
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.84 E-value=1.6e-10 Score=111.12 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=43.9
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC--------hhhhhccceEecCC
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG--------LHTLRSRLTIIPQD 548 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~--------~~~lr~~i~~V~Qd 548 (602)
++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+ ...++.+++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566666 789999999999999999999999999999999998884332 22346789999985
No 222
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.84 E-value=4.6e-10 Score=105.26 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=50.0
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+++|++++|+|+||||||||+++|+|. ++.|.|.++|.++..... .++.++|++|++. ...|+.+|+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l 72 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIA 72 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHH
Confidence 4678999999999999999999999998 678999999976643221 1334788888654 233444443
No 223
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.82 E-value=1.7e-09 Score=110.57 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=36.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC-CCCceEEEC-CeecCCCChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE-PADGTIIID-GVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~-~~~G~I~i~-g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
++++|+|+||||||||+++|+|... |..|+|.++ |.+.. ...+..+++++|+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~ 269 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHG 269 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTS
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCC
Confidence 8999999999999999999999999 999999987 65432 1234578888885
No 224
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=98.81 E-value=1.1e-09 Score=105.81 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=55.3
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCC-------CCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEP-------ADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~-------~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+++|++++|+||||||||||+++|+|.+.+ ..|.+++++.+. .. ++++++++|++.++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 5899999999999999999999999996655 444778877542 11 3468888898888777999998
Q ss_pred CCC
Q psy3001 561 DPV 563 (602)
Q Consensus 561 ~~~ 563 (602)
...
T Consensus 95 ~~~ 97 (231)
T 4a74_A 95 YVA 97 (231)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
No 225
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.81 E-value=1.8e-10 Score=120.86 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=36.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~ 251 (602)
++++|+||||||||||+++|+|+++|++|+|.+.+.++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 206 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence 789999999999999999999999999999999887763
No 226
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.79 E-value=3.9e-09 Score=98.97 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS 394 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 394 (602)
+....|++++.+|+++++| ||++|......+.+.+.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999988887754
No 227
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.79 E-value=1.4e-10 Score=115.48 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=51.4
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~ 269 (602)
|+++++..++| ++|+||||||||||+++|+|.+.+ |.|.++|.++.........+.+++++|.+
T Consensus 36 l~~~~l~~~~G---vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a 99 (274)
T 2x8a_A 36 FKALGLVTPAG---VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRA 99 (274)
T ss_dssp HHHTTCCCCSE---EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe---EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHH
Confidence 34444444444 999999999999999999999877 79999998887766667777888888863
No 228
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.78 E-value=2e-09 Score=114.24 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=49.6
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL 255 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~ 255 (602)
.++++||++.+ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 19 ~l~~vsl~i~~--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 19 GFFARTFDFDE--LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp TEEEEEEECCS--SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred cccceEEEEcc--ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 48899999987 9999999999999999999999999999999999998876543
No 229
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.77 E-value=1.2e-09 Score=110.71 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=51.5
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccC--CCCceEEE---CCeecCCCChhhhhccceEecCCccccc-cchhcc
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIE--PADGTIII---DGVDIRTLGLHTLRSRLTIIPQDPVLFS-GTLRLN 559 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~--~~~G~I~i---~g~~i~~~~~~~lr~~i~~V~Qdp~lf~-~Tv~~n 559 (602)
..+|+++||+|+||||||||+++|+|+++ |++|+|.+ ||... + ...++.++++ |+..++. -|+.+|
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~---~-~~~~~~~~~v-q~~~~~~~~~~~~~ 148 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH---P-NQVLKERGLM-KKKGFPESYDMHRL 148 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC---C-HHHHHHHTCT-TCTTSGGGBCHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC---c-HHHHHhCCEe-ecCCCCCCccHHHH
Confidence 47899999999999999999999999998 99999999 88663 2 2345678898 7654432 244443
No 230
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.76 E-value=8.4e-09 Score=103.81 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=34.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
++++++|+|||||||+++.|++.+.+..|+|.+.+.|.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 89999999999999999999999999989998866543
No 231
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.74 E-value=2e-09 Score=113.93 Aligned_cols=73 Identities=23% Similarity=0.203 Sum_probs=60.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccC--------------------------------------CCCceE
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE--------------------------------------PADGTI 523 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~--------------------------------------~~~G~I 523 (602)
++.++|++.+| +++|+|+||||||||+++|.++.. +.+|++
T Consensus 51 l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~i 129 (415)
T 4aby_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAA 129 (415)
T ss_dssp EEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEEE
T ss_pred eeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceEE
Confidence 45689999999 999999999999999999987764 447889
Q ss_pred EECCeecCCCChhhhhcc-ceEecCCccccccc
Q psy3001 524 IIDGVDIRTLGLHTLRSR-LTIIPQDPVLFSGT 555 (602)
Q Consensus 524 ~i~g~~i~~~~~~~lr~~-i~~V~Qdp~lf~~T 555 (602)
+++|++++.....++.+. +++++|++.++-.+
T Consensus 130 ~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~ 162 (415)
T 4aby_A 130 RLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLS 162 (415)
T ss_dssp EETTEEECHHHHHHHHTTTEEEETTTCTTTTSS
T ss_pred EECCEECCHHHHHHHHhhceEEecCcccccccC
Confidence 999999876666666655 89999998765433
No 232
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.69 E-value=7.2e-08 Score=93.90 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=39.1
Q ss_pred hCCCeEEEecccccC--ChhHHHHHHHHHHHh--ccccEEEEeeecccc--------ccc-CCeEEEEeC
Q psy3001 366 RKTKILILDEATAAI--DLETDDLIQSTIRSE--FAHCTVLTIAHRLNT--------IID-SDRVLVLDK 422 (602)
Q Consensus 366 ~~p~iliLDEpts~L--D~~~~~~i~~~l~~~--~~~~tvi~itH~l~~--------i~~-~d~i~~l~~ 422 (602)
.+|+++++|++++.+ |+.........+.+. ..++|+|+++|.... +.+ ||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 553333333334332 247899999998765 334 899999874
No 233
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.69 E-value=1.7e-08 Score=101.22 Aligned_cols=71 Identities=8% Similarity=0.039 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc---cccEEEEe--eeccccccc-CCeEEEEeCceEE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF---AHCTVLTI--AHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~i--tH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
+...+.+++++ .+|+++|+| |+++|+.....+.+..+... ...+++++ +|....+.+ ++++..+..+.++
T Consensus 170 ~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 170 KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence 34456667654 899999999 88999877665555443332 22334444 888777766 6665555556665
Q ss_pred e
Q psy3001 427 E 427 (602)
Q Consensus 427 ~ 427 (602)
.
T Consensus 246 l 246 (296)
T 2px0_A 246 F 246 (296)
T ss_dssp E
T ss_pred E
Confidence 4
No 234
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.67 E-value=9.8e-09 Score=105.26 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=51.1
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC-------CChhhhhccceEecCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-------LGLHTLRSRLTIIPQD 548 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~-------~~~~~lr~~i~~V~Qd 548 (602)
.+ |++.+|+++||+|+||||||||+++|+|+.+|+.|.|.+.|++... .....+++.+.+++|.
T Consensus 64 ~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 64 GL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp HH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred ee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 47 9999999999999999999999999999999999999998865221 1122344556777764
No 235
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.67 E-value=5.3e-09 Score=101.29 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=36.5
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHH-hccCCCCceEEECCeecCCCChh-hhhccceEecCCcccc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALF-RIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQDPVLF 552 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~-g~~~~~~G~I~i~g~~i~~~~~~-~lr~~i~~V~Qdp~lf 552 (602)
.+||++++|+++||+||||||||||+++|+ |++++ + .++.++...++. .-+.++.|.++++..|
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 84 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----I-VKSVSVTTRAARKGEKEGKDYYFVDREEF 84 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC----C----E-EECCCEESSCCCTTCCBTTTBEECCHHHH
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----c-ccccccCCCCCCccccCCCeEEEecHHHh
Confidence 589999999999999999999999999999 99854 2 333333332221 1123566777777555
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.67 E-value=3.9e-09 Score=97.80 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=37.5
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
+++|+||||||||||+++|+|+++ |.++|.+.........+++++|++|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 589999999999999999999985 667776553322114567899999987
No 237
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.66 E-value=6.8e-09 Score=111.00 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=37.6
Q ss_pred eEEEEecCCceEEEEeccCCChhHHHHHHhc--ccCCCCceEEECCeecCC
Q psy3001 204 YKVRYREGLELVGIVGRTGAGKSSLTLALFR--IIEPADGTIIIDGVDIRT 252 (602)
Q Consensus 204 vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g--~~~~~~G~I~i~g~~~~~ 252 (602)
+++.+.++ +.++|.|.+||||||+++.|.. ++.+..|++.+.+.|.+.
T Consensus 160 v~ldL~~~-pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 160 VVADLAKM-PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp EEEEGGGS-CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred EEEEcccC-ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 44444444 7799999999999999999876 667777888887777665
No 238
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.65 E-value=8.8e-09 Score=98.06 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=40.9
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++|+++||+|+||||||||+++|+|+++|+ | ..+++|+||.+.++.+...|+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~ 71 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPR 71 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHh
Confidence 5789999999999999999999999999875 3 135666666666655555443
No 239
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.64 E-value=6.9e-09 Score=95.54 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=34.5
Q ss_pred eeeEEecceeEEEECCCCCChHHHHH------------HHHhccCCCCceEEECC
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTL------------ALFRIIEPADGTIIIDG 527 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~------------~L~g~~~~~~G~I~i~g 527 (602)
+||++++||+++|+|+||||||||++ .+.|++.++.|++.+++
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~ 56 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTG 56 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHH
Confidence 79999999999999999999999999 55555555555544443
No 240
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.64 E-value=1.1e-09 Score=105.75 Aligned_cols=97 Identities=23% Similarity=0.182 Sum_probs=68.9
Q ss_pred ceeEEEECCCCCChHHHHHHHHhcc---CCCCceEEE--------CCeecCC-CChhhhhccceEecCCcc------ccc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRII---EPADGTIII--------DGVDIRT-LGLHTLRSRLTIIPQDPV------LFS 553 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~---~~~~G~I~i--------~g~~i~~-~~~~~lr~~i~~V~Qdp~------lf~ 553 (602)
+.+++|+|++||||||++++|++.+ .+++|.+.. +|.++.. ....++++.+++++|++. ++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 4579999999999999999999877 678899877 6766542 334567889999999873 333
Q ss_pred cchhcccCCCCCCcHHHHHHHHHHcCCCccccccccCCCcc
Q psy3001 554 GTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHE 594 (602)
Q Consensus 554 ~Tv~~nl~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~ 594 (602)
.++.+++ .++++.+++..+..++++.....+..+.
T Consensus 85 ~~v~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 119 (227)
T 1cke_A 85 EDVSGEI------RTQEVANAASQVAAFPRVREALLRRQRA 119 (227)
T ss_dssp EECHHHH------TSHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred eeCchhh------CCHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3454444 3466777777777777665544443333
No 241
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=98.63 E-value=7.4e-09 Score=106.59 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=61.9
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhcc--CCCC----ce-EEECCeecCCCChhhhhccceEecCCccccccchh
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRII--EPAD----GT-IIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLR 557 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~--~~~~----G~-I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~ 557 (602)
.++.+++|++++|+|+||||||||++.+++.. +|++ |+ |++++.+.- .++++++++|++.++..++.
T Consensus 124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCCHHHHG
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCCHHHHh
Confidence 46789999999999999999999999999998 6666 67 899986541 25679999999988888999
Q ss_pred cccCCC
Q psy3001 558 LNLDPV 563 (602)
Q Consensus 558 ~nl~~~ 563 (602)
+|+...
T Consensus 198 ~ni~~~ 203 (349)
T 1pzn_A 198 KHIYVA 203 (349)
T ss_dssp GGEEEE
T ss_pred hCEEEE
Confidence 998643
No 242
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=98.62 E-value=5.7e-09 Score=106.14 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=59.6
Q ss_pred eeEEEECCCCCChHHHHHHHHhcc--------CCCCceEEECCeecCCCC---------------hhhhhccceEe---c
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRII--------EPADGTIIIDGVDIRTLG---------------LHTLRSRLTII---P 546 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~--------~~~~G~I~i~g~~i~~~~---------------~~~lr~~i~~V---~ 546 (602)
++++|+|+||||||||++.|+|+. .++.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 578999999999999999999997 789999999999987653 34667789988 7
Q ss_pred CCccc-cccchhcccCCC
Q psy3001 547 QDPVL-FSGTLRLNLDPV 563 (602)
Q Consensus 547 Qdp~l-f~~Tv~~nl~~~ 563 (602)
|++.+ |..+|.+|....
T Consensus 85 q~~~~~~~~~v~E~~~l~ 102 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMA 102 (318)
T ss_dssp HHTSCCCSEEEEEEETTC
T ss_pred hcCCCCCCEEEEeCCCCC
Confidence 88764 677999998653
No 243
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=98.62 E-value=1.2e-07 Score=100.87 Aligned_cols=60 Identities=30% Similarity=0.470 Sum_probs=39.3
Q ss_pred eeEEEECCCCCChHHHHHHHHhccC------------CCCceEEECCeecCCCChhhhhccceEecCCcccc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIE------------PADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~------------~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf 552 (602)
-+++|+|++|+|||||++.|+|... +.+|.+.++|+++.-++....++...+.+|....|
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~ 252 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY 252 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence 3799999999999999999999853 67899999998776555555555566666655544
No 244
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=98.61 E-value=1.6e-08 Score=106.20 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=65.8
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC----hhhhhccceEec---------CCcccc--c-
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG----LHTLRSRLTIIP---------QDPVLF--S- 553 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~----~~~lr~~i~~V~---------Qdp~lf--~- 553 (602)
.+|+.++|+||||||||||+++|+|+++|++|+|.+.|.++.... ..++++++++.+ |||..+ .
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 678899999999999999999999999999999999988774321 223455676655 999653 2
Q ss_pred ----cchhcccCCC----------CCCcHHHHHHHHHHcCCCcc
Q psy3001 554 ----GTLRLNLDPV----------GESSDEAIWKALELAHLNTF 583 (602)
Q Consensus 554 ----~Tv~~nl~~~----------~~~~~~~i~~al~~~~l~~~ 583 (602)
.|+++++... ...+..+..+.|..+++..+
T Consensus 245 iRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~ 288 (418)
T 1p9r_A 245 IRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF 288 (418)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH
Confidence 2666665310 11222344456777777653
No 245
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.60 E-value=3.7e-09 Score=103.39 Aligned_cols=63 Identities=13% Similarity=0.090 Sum_probs=48.4
Q ss_pred EEecceeEEEECCCCCChHHHHHHHH--hccCCCCceEEECCeecCCCChhhhhccceEecCCccc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALF--RIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL 551 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~--g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l 551 (602)
.+++|++++|+||||||||||+++|+ |+.++..|.+.+++.+... .....++++++++|++..
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~ 90 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASFGWDFEKYEK 90 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTTTCCHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHcCCChHHHhh
Confidence 68999999999999999999999999 7756777888887643221 122334579999998643
No 246
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.59 E-value=1.8e-08 Score=94.36 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=64.8
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccC-------------CCCceEEECCeecCCCChhhhhccceEecCCccc
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE-------------PADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL 551 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~-------------~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l 551 (602)
.|+...+|+.++|+||||||||||++.|++.++ |..|+ ++|++..-++..+.++.+ .|+.++
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fl 86 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFL 86 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEE
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhh
Confidence 455566899999999999999999999999986 67777 688887777777777664 688899
Q ss_pred cccchhcccCCCCCCcHHHHHHHHHH
Q psy3001 552 FSGTLRLNLDPVGESSDEAIWKALEL 577 (602)
Q Consensus 552 f~~Tv~~nl~~~~~~~~~~i~~al~~ 577 (602)
+..++..|.-. .+.+.+.++++.
T Consensus 87 e~~~~~~n~YG---t~~~~v~~~l~~ 109 (197)
T 3ney_A 87 EFGSYQGNMFG---TKFETVHQIHKQ 109 (197)
T ss_dssp EEEEETTEEEE---EEHHHHHHHHHT
T ss_pred hhhhhhceecc---cchhhHHHHHhc
Confidence 99999988522 345556666653
No 247
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.58 E-value=1.4e-08 Score=94.34 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=52.8
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCC-CCceEEE----------CCeecCCCChhhhhccceEecCCccccccchhcc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEP-ADGTIII----------DGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLN 559 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~-~~G~I~i----------~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~n 559 (602)
+|++++|+||||||||||+++|++.+++ ..|.|.. +|.+....+...+++ .+.|+.+++..++..|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~---~~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ---DISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHH---HHHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHH---HHHcCCceEEEEEcCc
Confidence 5889999999999999999999999864 4455543 333333334444433 2456667777777777
Q ss_pred cCCCCCCcHHHHHHHHH
Q psy3001 560 LDPVGESSDEAIWKALE 576 (602)
Q Consensus 560 l~~~~~~~~~~i~~al~ 576 (602)
... .+.+.++++++
T Consensus 81 ~yg---~~~~~i~~~l~ 94 (180)
T 1kgd_A 81 MYG---TKLETIRKIHE 94 (180)
T ss_dssp EEE---EEHHHHHHHHH
T ss_pred ccc---ccHHHHHHHHH
Confidence 421 23455666665
No 248
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.57 E-value=2e-08 Score=101.27 Aligned_cols=58 Identities=17% Similarity=0.070 Sum_probs=39.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEE---CCeecCCCChHHHhhccceecccch
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII---DGVDIRTLGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i---~g~~~~~~~~~~~~~~i~~v~Q~~~ 270 (602)
++++|+|+||||||||+++|+|+..|++|+|.+ +|.++.........+.+++++|.|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCS
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence 889999999999999999999999999999999 8988876542211246899999864
No 249
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.54 E-value=6.5e-07 Score=91.88 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhC--CCeEEEecccccCC----------h---hHHHHHHHHHHHh-----ccccEEEEeeecccc-----
Q psy3001 356 QLICLARALLRK--TKILILDEATAAID----------L---ETDDLIQSTIRSE-----FAHCTVLTIAHRLNT----- 410 (602)
Q Consensus 356 Qrl~lAral~~~--p~iliLDEpts~LD----------~---~~~~~i~~~l~~~-----~~~~tvi~itH~l~~----- 410 (602)
|.+.++++++++ |+++|+||+++.+. + ...+.+.+.++++ ..++|||+++|-...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 445677877755 99999999999882 2 1122334444443 237899999996541
Q ss_pred -----------ccc-CCeEEEEeCceEEeec
Q psy3001 411 -----------IID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 411 -----------i~~-~d~i~~l~~G~i~~~g 429 (602)
+.. ||.++.++.+++...|
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 334 8888888887766544
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.54 E-value=3.2e-08 Score=93.65 Aligned_cols=60 Identities=20% Similarity=0.122 Sum_probs=46.0
Q ss_pred EEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchh
Q psy3001 207 RYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 207 ~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~ 271 (602)
+..+| ++++|+||||||||||+++|+|+++ .+.+++.++........+..++|++|++..
T Consensus 3 ~m~~g-~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (205)
T 3tr0_A 3 AMNKA-NLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETR 62 (205)
T ss_dssp --CCC-CEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHH
T ss_pred cCCCC-cEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHH
Confidence 33445 8999999999999999999999974 577887776655444446778999997543
No 251
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.53 E-value=1.4e-07 Score=88.87 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=30.5
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS 394 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 394 (602)
...|++++.+|+++++| ||++|......+.+.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 46699999999999999 999999998888877754
No 252
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.52 E-value=2.7e-08 Score=92.82 Aligned_cols=27 Identities=33% Similarity=0.444 Sum_probs=25.0
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEP 518 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~ 518 (602)
|++++|+||||||||||+++|+|++++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCc
Confidence 567999999999999999999999983
No 253
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.50 E-value=3.8e-08 Score=106.04 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=42.7
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCee
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 529 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~ 529 (602)
.+++.+++|+.++|+|+|||||||++++|+|+++|++|.|.++|.+
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 4678889999999999999999999999999999999999998854
No 254
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.50 E-value=5.7e-07 Score=96.13 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
.|.+....+...+.+++++|+......-......++.+.+++ .++.+|++.++.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccch
Confidence 477888888889999998887765544333444566666654 467888888887654
No 255
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.48 E-value=2.2e-08 Score=99.56 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=61.3
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc-cccc-cchhcccC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP-VLFS-GTLRLNLD 561 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp-~lf~-~Tv~~nl~ 561 (602)
.+++++++| ++|+||||||||||+++|+|...+ |.|.++|.++......+.++++++++|++ ..+. -++.+|++
T Consensus 38 ~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid 113 (274)
T 2x8a_A 38 ALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVD 113 (274)
T ss_dssp HTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCT
T ss_pred HcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhh
Confidence 478888889 999999999999999999999876 79999998886665566677899999986 3332 36677876
Q ss_pred C
Q psy3001 562 P 562 (602)
Q Consensus 562 ~ 562 (602)
.
T Consensus 114 ~ 114 (274)
T 2x8a_A 114 A 114 (274)
T ss_dssp T
T ss_pred h
Confidence 4
No 256
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.48 E-value=4.8e-08 Score=99.50 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=59.5
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhcc-----------------------------------------------
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRII----------------------------------------------- 516 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~----------------------------------------------- 516 (602)
.+++++.+| ..+|+|+||||||||+++|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 367888888 99999999999999999998543
Q ss_pred ---CCCCceEEECCeecCCCChhhhhccceEecCCcccc-ccchhcccC
Q psy3001 517 ---EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-SGTLRLNLD 561 (602)
Q Consensus 517 ---~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf-~~Tv~~nl~ 561 (602)
.+.+|+++++|.+++......+...+++.||+..++ .+++.+++.
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~ 144 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVN 144 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHT
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHh
Confidence 334578899998875444555666789999988765 667776664
No 257
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.47 E-value=2.4e-08 Score=94.30 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=45.7
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf 552 (602)
++.++|++++|+|+||||||||+++|++.+ |.+.++|.++... ....+..+++++|++..+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccc
Confidence 445689999999999999999999999987 8999999776421 112233689999987554
No 258
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.47 E-value=5.7e-09 Score=100.18 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=36.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH--------HHhhccceecc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH--------TLRSRLTIIPQ 267 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~--------~~~~~i~~v~Q 267 (602)
++++|+||||||||||+++|+|++.|++|+|.++|.++...++. .++..+++++|
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 90 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSML 90 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEE
Confidence 67999999999999999999999999999999999887443322 23455666665
No 259
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.45 E-value=8e-08 Score=90.93 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=42.4
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf 552 (602)
+++.+|++++|+|+|||||||++++|++.+.|+.| +.+. ...... ....+.+++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i~-~~~~~~-~~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSIS-MTTRQM-REGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCCC-EECSCC-CTTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eecc-cccCCC-CCCccCCCceEEcCHHHH
Confidence 35788999999999999999999999999977655 2221 111111 112234589999988544
No 260
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.44 E-value=2.3e-07 Score=99.03 Aligned_cols=172 Identities=15% Similarity=0.204 Sum_probs=97.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCc-eEEECCeecCCCChHHHhhcc-----ceecccchhhh
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADG-TIIIDGVDIRTLGLHTLRSRL-----TIIPQVLATIF 273 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G-~I~i~g~~~~~~~~~~~~~~i-----~~v~Q~~~~~~ 273 (602)
.++++...+.+| +++.|.|++|+|||||+..+++...+..| .|.+-+. +++...+.+++ ++-++.
T Consensus 192 ~LD~~~gGl~~G-~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~~~~----- 262 (454)
T 2r6a_A 192 ELDRMTSGFQRS-DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNINAQN----- 262 (454)
T ss_dssp HHHHHHSSBCTT-CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCCHHH-----
T ss_pred HHHhhcCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCCHHH-----
Confidence 456666556666 99999999999999999999998776545 5555332 23444443332 111110
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+. ..... ...+.......+.+ ...++.-.....++ .+
T Consensus 263 --------------------------------l~----~g~l~--~~~~~~~~~a~~~l---~~~~l~i~d~~~~s--~~ 299 (454)
T 2r6a_A 263 --------------------------------LR----TGKLT--PEDWGKLTMAMGSL---SNAGIYIDDTPSIR--VS 299 (454)
T ss_dssp --------------------------------HH----TSCCC--HHHHHHHHHHHHHH---HSSCEEEECCTTCC--HH
T ss_pred --------------------------------Hh----cCCCC--HHHHHHHHHHHHHH---hcCCEEEECCCCCC--HH
Confidence 00 00000 01111222222222 22222222222344 46
Q ss_pred hHHHHHHHHHHh--hCCCeEEEecccccCChh--------HHHHHHHHHHHhc--cccEEEEeee---------c--cc-
Q psy3001 354 QRQLICLARALL--RKTKILILDEATAAIDLE--------TDDLIQSTIRSEF--AHCTVLTIAH---------R--LN- 409 (602)
Q Consensus 354 q~Qrl~lAral~--~~p~iliLDEpts~LD~~--------~~~~i~~~l~~~~--~~~tvi~itH---------~--l~- 409 (602)
|.+ +.+|.+. .+|+++|+|+++...++. ....+...|+.+. .+++||+++| + +.
T Consensus 300 ~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~l 377 (454)
T 2r6a_A 300 DIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMM 377 (454)
T ss_dssp HHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCT
T ss_pred HHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcH
Confidence 654 6677776 579999999999987532 2234555566553 3689999999 2 32
Q ss_pred -------cccc-CCeEEEEeCceE
Q psy3001 410 -------TIID-SDRVLVLDKGLV 425 (602)
Q Consensus 410 -------~i~~-~d~i~~l~~G~i 425 (602)
.+.. ||.|++|..++.
T Consensus 378 sdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 378 SDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHhhccchhHhhCCEEEEEecccc
Confidence 3455 899999986653
No 261
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.44 E-value=1.8e-09 Score=112.10 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=51.7
Q ss_pred CC--CeEEEecccccCChhHHHHHHHHHHHh-cc-ccEEEEeeeccccccc-CCeEE-EEeCc-eEEeecC
Q psy3001 367 KT--KILILDEATAAIDLETDDLIQSTIRSE-FA-HCTVLTIAHRLNTIID-SDRVL-VLDKG-LVVEFDS 430 (602)
Q Consensus 367 ~p--~iliLDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~l~~i~~-~d~i~-~l~~G-~i~~~g~ 430 (602)
+| +++++|||+..+|+...+..++.++.. .. +.|+ ++|.+..+.. ||++. +|++| +++..++
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~ 207 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGD 207 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCC
Confidence 88 999999999999999988888888776 44 4564 3999999988 99998 99999 8775554
No 262
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.44 E-value=8.4e-08 Score=88.95 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=63.2
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCe--ecCCCCh----hhhhccceEecCCccc-cc---
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV--DIRTLGL----HTLRSRLTIIPQDPVL-FS--- 553 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~--~i~~~~~----~~lr~~i~~V~Qdp~l-f~--- 553 (602)
.+++.+.+| ..+|+|+||||||||+++|.+++.+..|.....+. ++-.... ...+..|.+++|+|.- |+
T Consensus 19 ~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~ 97 (182)
T 3kta_A 19 KVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDE 97 (182)
T ss_dssp CEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSSS
T ss_pred cEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccCC
Confidence 577888888 89999999999999999999999887776433331 1111110 0234579999998731 11
Q ss_pred --cchhcccC--------CC-CCCcHHHHHHHHHHcCCCc
Q psy3001 554 --GTLRLNLD--------PV-GESSDEAIWKALELAHLNT 582 (602)
Q Consensus 554 --~Tv~~nl~--------~~-~~~~~~~i~~al~~~~l~~ 582 (602)
-+|+..+. .. ...+.+++.+.++.+++..
T Consensus 98 ~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~ 137 (182)
T 3kta_A 98 DEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISP 137 (182)
T ss_dssp SEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCT
T ss_pred cEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCC
Confidence 12222211 11 1235678999999988754
No 263
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.42 E-value=4.3e-08 Score=91.60 Aligned_cols=59 Identities=22% Similarity=0.072 Sum_probs=44.0
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccc-ccchhcc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-SGTLRLN 559 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf-~~Tv~~n 559 (602)
|++++|+|+||||||||+++|++ +.+|++.++|.++... ..+++++|.+..+ ..|+++|
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~ 61 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKN 61 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHH
Confidence 67899999999999999999997 5679999998665432 2467888876332 2355444
No 264
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.39 E-value=8.6e-08 Score=96.59 Aligned_cols=57 Identities=18% Similarity=0.045 Sum_probs=41.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEE---CCeecCCCChHHHhhccceecccch
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII---DGVDIRTLGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i---~g~~~~~~~~~~~~~~i~~v~Q~~~ 270 (602)
++++|+|+||||||||+|+|. +.+|..|+|.+ +|.++.........+.+++++|.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg 225 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPG 225 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcC
Confidence 789999999999999999999 99999999999 8988765432111236899999864
No 265
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.38 E-value=1.5e-08 Score=99.11 Aligned_cols=66 Identities=11% Similarity=0.220 Sum_probs=51.0
Q ss_pred cceeEEEECCCCCChHHHHHHHH---hccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALF---RIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~---g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
++++++|+|+||||||||+++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.++.. ++.+++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l 95 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLM 95 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 46889999999999999999999 999999999988875421 2344567778888766543 555544
No 266
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.37 E-value=5.5e-09 Score=104.95 Aligned_cols=110 Identities=20% Similarity=0.185 Sum_probs=74.9
Q ss_pred HHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeec-Ch-hHHhhcchhHHHHHHHhhhhhHHHHHHHhhhh
Q psy3001 387 LIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD-SP-SVLMKNKASIFYSMAKDAGLAWLAVRLETVGN 463 (602)
Q Consensus 387 ~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (602)
.+.+.++++. .|+|.+.|+++.+.. +|++..+.+|++++.+ ++ +++... .
T Consensus 26 ~l~~~l~~l~--~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~-------~------------------ 78 (295)
T 1ls1_A 26 DLKATLREIR--RALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILAT-------V------------------ 78 (295)
T ss_dssp HHHHHHHHHH--HHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHH-------H------------------
T ss_pred HHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHH-------H------------------
Confidence 3444444443 589999999999988 8998888877765321 21 222110 0
Q ss_pred hHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC
Q psy3001 464 LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532 (602)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~ 532 (602)
.......+ .... ..++|+ +|++++++|+||+||||++..|++.+.+..|+|.+.+.|+..
T Consensus 79 ---~~~l~~~~-~~~~---~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 79 ---YEALKEAL-GGEA---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp ---HHHHHHHT-TSSC---CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred ---HHHHHHHH-CCCC---ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 00000111 1111 246777 899999999999999999999999999999999998877654
No 267
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.37 E-value=9.7e-08 Score=92.31 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=22.5
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHh-cccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALF-RIIEP 238 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~-g~~~~ 238 (602)
--+++||+..+| ++++|+||||||||||+++|+ |++++
T Consensus 16 ~~~~~sl~v~~G-~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 16 TQGPGSMLKSVG-VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp ------CCEECC-CEEEEECSCC----CHHHHHHC----C
T ss_pred ccCCCCcccCCC-CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 356788888888 999999999999999999999 99843
No 268
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.33 E-value=7e-08 Score=91.53 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=29.8
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhcc-----CCCCceEEE
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRII-----EPADGTIII 525 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~-----~~~~G~I~i 525 (602)
+|.+.+|.+++|+|+||||||||++.|+|.. .|+.|++.+
T Consensus 20 ~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 20 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred HCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 3889999999999999999999999999998 788887654
No 269
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.32 E-value=9.3e-08 Score=93.79 Aligned_cols=56 Identities=29% Similarity=0.304 Sum_probs=50.7
Q ss_pred ceEEEEeccCCChhHHHHHHh---cccCCCCceEE--------ECCeecC-CCChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALF---RIIEPADGTII--------IDGVDIR-TLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~---g~~~~~~G~I~--------i~g~~~~-~~~~~~~~~~i~~v~Q~ 268 (602)
++++|+|+|||||||++++|+ |+..+++|.+. .+|.++. ......+++.+++++|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 899999999999999999999 99999999999 8998884 45677889999999985
No 270
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.29 E-value=2.7e-07 Score=93.29 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=42.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC--CCCceEEE---CCeecCCCChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE--PADGTIII---DGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~--~~~G~I~i---~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
+++||+|+||||||||+++|+|++. |++|+|.+ ||.... ...++.++++ |.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~ 136 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP----NQVLKERGLM-KK 136 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC----HHHHHHHTCT-TC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCc----HHHHHhCCEe-ec
Confidence 8999999999999999999999998 99999999 887642 2345667777 53
No 271
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.29 E-value=9.7e-08 Score=90.13 Aligned_cols=47 Identities=30% Similarity=0.477 Sum_probs=40.4
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceE--EECCeecCC
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI--IIDGVDIRT 532 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I--~i~g~~i~~ 532 (602)
.++...+|++++|+|++||||||++++|++.+. ..|.+ .+||.++..
T Consensus 18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp HHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 345557899999999999999999999999997 78988 999877753
No 272
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=98.28 E-value=1e-07 Score=95.83 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=50.0
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCc-eEEECCeecCCCChhhhhccceEecCCc
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG-TIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G-~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
..+++.+++|+.++|+|+||||||||++.|+|...|++| .|.+.+.+ .+..++++++..+.|+.
T Consensus 26 d~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~ 90 (296)
T 1cr0_A 26 NDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRV 90 (296)
T ss_dssp HHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCC
Confidence 357789999999999999999999999999999999888 77654433 24455666665555544
No 273
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.27 E-value=3.4e-07 Score=102.18 Aligned_cols=104 Identities=23% Similarity=0.168 Sum_probs=79.3
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCC--CCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC--
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD-- 561 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~--~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~-- 561 (602)
++++.++.+++|+|++|+|||||++.|++...+ ..|+| .+|..+......+.++.+++.+|.+.++..+++.|+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456788999999999999999999999987665 68998 7888888888888888999999999988888888874
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccccccC
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
|+...-..++..+++.+++.-++-....+
T Consensus 82 pG~~~f~~~~~~~l~~ad~~ilVvD~~~g 110 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEAADAALVAVSAEAG 110 (665)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTTC
T ss_pred CCccchHHHHHHHHhhcCcEEEEEcCCcc
Confidence 33222236677888877765544333333
No 274
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.26 E-value=1e-08 Score=102.28 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=41.7
Q ss_pred EEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
++|+||||||||||+++|++... .|.|.+++.++........++.+..++|.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 127 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET 127 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHH
Confidence 89999999999999999999885 78999988776544444455666777775
No 275
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.25 E-value=2.8e-07 Score=85.83 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=24.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
++++|+||||||||||+++|+|+++
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6799999999999999999999998
No 276
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.24 E-value=8.1e-08 Score=92.87 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=49.6
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCC------Chhh----hhccceEecCCccccc
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL------GLHT----LRSRLTIIPQDPVLFS 553 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~------~~~~----lr~~i~~V~Qdp~lf~ 553 (602)
....++|+.++|.|+|||||||++++|+|. .|+|.+.+.+.... ...+ .++++++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 345578999999999999999999999998 78999998876432 1111 2457899999886653
No 277
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=98.24 E-value=2.8e-07 Score=89.45 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=45.8
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHh--ccCC-----CCceEEECCeecCC-CChhhhhccceEecCC
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFR--IIEP-----ADGTIIIDGVDIRT-LGLHTLRSRLTIIPQD 548 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g--~~~~-----~~G~I~i~g~~i~~-~~~~~lr~~i~~V~Qd 548 (602)
.+++|++++|+|+||||||||++.+++ ..+| ..|.+++++.+.-. ....++++++++.+|+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 88 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD 88 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH
Confidence 478999999999999999999999999 5554 57889998865211 1123345568887764
No 278
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.24 E-value=4.4e-07 Score=95.07 Aligned_cols=71 Identities=17% Similarity=0.065 Sum_probs=42.5
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccc-ccchhcccC
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-SGTLRLNLD 561 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf-~~Tv~~nl~ 561 (602)
.+++|+| +|+|+||||||||+++|+|...+..| .+|.++...+ ...++.+++++|++.++ .-||++|+.
T Consensus 28 ~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i~~v~q~~~~~~~Ltv~Dt~g 97 (418)
T 2qag_C 28 RGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQSKVLIKEGGVQLLLTIVDTPG 97 (418)
T ss_dssp -CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEECC------CEEEEEEECC-
T ss_pred cCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeEEEEEecCCcccceeeeechh
Confidence 3566665 99999999999999999999886665 2343332211 11245699999998766 458999986
Q ss_pred CC
Q psy3001 562 PV 563 (602)
Q Consensus 562 ~~ 563 (602)
..
T Consensus 98 ~~ 99 (418)
T 2qag_C 98 FG 99 (418)
T ss_dssp --
T ss_pred hh
Confidence 54
No 279
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.23 E-value=4.2e-07 Score=91.48 Aligned_cols=69 Identities=20% Similarity=0.122 Sum_probs=33.3
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhc-cCCCCceEEECCeecCCCChhhhhccceEecCCcccc-ccchhcccC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI-IEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-SGTLRLNLD 561 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~-~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf-~~Tv~~nl~ 561 (602)
+++|+| +|+|+||+|||||++.|+|. ..|++| |.++|.++... .. ++.+++++|++..+ .-||+++..
T Consensus 16 ~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t--~~-~~~~~~~~q~~~~~~~ltv~Dt~g 85 (301)
T 2qnr_A 16 GFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT--VQ-IEASTVEIEERGVKLRLTVVDTPG 85 (301)
T ss_dssp --CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC-
T ss_pred CCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc--ce-EeeEEEEecCCCcccCcchhhhhh
Confidence 466665 99999999999999999998 889999 88888776431 11 35689999987543 347887765
Q ss_pred C
Q psy3001 562 P 562 (602)
Q Consensus 562 ~ 562 (602)
.
T Consensus 86 ~ 86 (301)
T 2qnr_A 86 Y 86 (301)
T ss_dssp -
T ss_pred h
Confidence 4
No 280
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.22 E-value=1.7e-07 Score=93.97 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=31.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEE---CCeecCCCChHHHhhccceecccch
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII---DGVDIRTLGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i---~g~~~~~~~~~~~~~~i~~v~Q~~~ 270 (602)
++++|+|+||||||||+|+|.|...|..|+|.+ +|..++... ..++..+++++|.|.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg 233 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPG 233 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCS
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCC
Confidence 899999999999999999999999999999998 787765432 112222788888754
No 281
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.22 E-value=7.5e-08 Score=104.46 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=60.8
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCc-eEE-ECCeecCC-------CCh---hhhhccceEecCCcccccc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG-TII-IDGVDIRT-------LGL---HTLRSRLTIIPQDPVLFSG 554 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G-~I~-i~g~~i~~-------~~~---~~lr~~i~~V~Qdp~lf~~ 554 (602)
..+.+|++++|+|+||||||||+++|+|.+.|++| ++. +||.++.. .+. ...++++++++|+..
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~---- 439 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEIT---- 439 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHH----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHH----
Confidence 35778999999999999999999999999999987 785 99876632 111 123456899988742
Q ss_pred chhcccC---CCC--CCcHHHHHHHHHHcC
Q psy3001 555 TLRLNLD---PVG--ESSDEAIWKALELAH 579 (602)
Q Consensus 555 Tv~~nl~---~~~--~~~~~~i~~al~~~~ 579 (602)
..+|+. ... ...++++.++++.++
T Consensus 440 -~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 440 -KNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp -HTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred -hcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 233321 111 123456777777766
No 282
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.21 E-value=1.6e-08 Score=99.30 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=41.0
Q ss_pred EEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
++|+||||||||||++++++... .|.+.+++.++........++.+..++|.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 103 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET 103 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHH
Confidence 89999999999999999999885 78999988766544444445566666664
No 283
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.21 E-value=4.6e-06 Score=88.75 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccc----------cCChhHHHHHHHHHHHh-----ccccEEEEeeecccccc
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATA----------AIDLETDDLIQSTIRSE-----FAHCTVLTIAHRLNTII 412 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts----------~LD~~~~~~i~~~l~~~-----~~~~tvi~itH~l~~i~ 412 (602)
+++++|-.+++|....|.+|++||+.+ +.|+.....+.+.+... ..+..||.+||+++.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 478888999999999999999999954 44555444454554433 23578999999986653
No 284
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.20 E-value=5.4e-07 Score=99.78 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=46.5
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCC-ceEEECCeecCCCChHHHhhccceeccc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPAD-GTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~-G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
++++++....+ +.++|+||||+|||||+++|+++.++.. |.+.+++.+..... ..++++|+.
T Consensus 50 l~~l~~~i~~g-~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g 112 (604)
T 3k1j_A 50 VEVIKTAANQK-RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPAC 112 (604)
T ss_dssp HHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETT
T ss_pred HhhccccccCC-CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecc
Confidence 34455555555 7899999999999999999999999887 78888776655432 346666654
No 285
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.20 E-value=2.5e-07 Score=95.12 Aligned_cols=59 Identities=22% Similarity=0.164 Sum_probs=43.1
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCC-CceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~-~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
+...+|+.++|+||||||||||+++|+|+++|+ .|.|...+.++.. . .+...++++|.+
T Consensus 118 l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~---~~~~~~~v~q~~ 177 (356)
T 3jvv_A 118 VSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-V---HESKKCLVNQRE 177 (356)
T ss_dssp HHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-C---CCCSSSEEEEEE
T ss_pred HHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-h---hhccccceeeee
Confidence 345678899999999999999999999999997 5666554433322 1 234567777755
No 286
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.19 E-value=8.4e-07 Score=83.62 Aligned_cols=38 Identities=34% Similarity=0.646 Sum_probs=33.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceE--EECCeecC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTI--IIDGVDIR 251 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I--~i~g~~~~ 251 (602)
++++|+|+|||||||++++|++.+. ..|.+ .++|.++.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 8999999999999999999999998 77888 88876553
No 287
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.16 E-value=4.8e-08 Score=100.07 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=50.0
Q ss_pred eeEEEECCCCCChHHHHHHHHhcc----CCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~----~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
+.++|+||||+|||||+++++|.+ .+.+|++..++.++........+..|.+|+|.+.++. ++.+++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~-~~~e~L 122 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK-AVEELL 122 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH-HHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH-HHHHHH
Confidence 679999999999999999999998 6778888777666543211112457999999877654 665554
No 288
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.14 E-value=2e-06 Score=81.31 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc--cc-CCeEEEEe
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI--ID-SDRVLVLD 421 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i--~~-~d~i~~l~ 421 (602)
.|+.+|..+++.+..+|+.+-.+ ++.++|.....+.+.+... .+.++|+-+|.+.+. .. ||.+++++
T Consensus 62 ~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 62 QGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 48889999999888887654332 3455666666666655443 245788888887664 34 89998886
No 289
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.09 E-value=7.8e-07 Score=90.09 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=54.5
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh----hhh-----hccceEe-cCCcc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTL-----RSRLTII-PQDPV 550 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~----~~l-----r~~i~~V-~Qdp~ 550 (602)
.++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+.|+..... ..+ +.++.++ +|.+.
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 5788889999999999999999999999999999999999998877654321 222 5678999 67543
No 290
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.08 E-value=9.7e-07 Score=99.33 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=42.8
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccC-CCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcccCC
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE-PADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLDP 562 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~-~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~~ 562 (602)
++++. |++++|+||||||||||+|+++|+.. ++.|.+.- +.+..+++++| +|+. ++.+|+..
T Consensus 571 disl~-g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a~~~~i~~v~~---i~~~~~~~d~l~~ 634 (765)
T 1ewq_A 571 DLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------AEEAHLPLFDG---IYTRIGASDDLAG 634 (765)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------SSEEEECCCSE---EEEECCC------
T ss_pred eccCC-CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------hhccceeeHHH---hhccCCHHHHHHh
Confidence 44444 99999999999999999999999874 67887531 12456888887 5554 77777754
No 291
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.08 E-value=5.5e-06 Score=85.44 Aligned_cols=38 Identities=37% Similarity=0.487 Sum_probs=31.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC-----------CCCceEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE-----------PADGTIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~-----------~~~G~I~i~g~~~ 250 (602)
..++|+|++|||||||++.|+|... |..|.|.++|.++
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 5699999999999999999999765 5678888888654
No 292
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.08 E-value=4.3e-06 Score=93.30 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=48.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC--CCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~--~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
..++|+|++|+|||||++.|.+...+ ..|+| .+|..+.+....+.++.+++.+|.
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~ 66 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGV 66 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEE
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecc
Confidence 77999999999999999999987765 67888 788888888888888888888874
No 293
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.07 E-value=1.2e-06 Score=87.48 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=44.9
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++.+|||+|++|||||||++.|.+++++. | . . ++.+.+|+||+++|+.++++|+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHH
Confidence 457789999999999999999999999763 2 0 0 3345666999999999998886
No 294
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.06 E-value=9.7e-07 Score=92.01 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=44.0
Q ss_pred EEecceeEEEECCCCCChHHHHHH--HHhccCCCCc-----eEEECCeecC-CCChhhhhccceEecC
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLA--LFRIIEPADG-----TIIIDGVDIR-TLGLHTLRSRLTIIPQ 547 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~--L~g~~~~~~G-----~I~i~g~~i~-~~~~~~lr~~i~~V~Q 547 (602)
-+.+|++++|+|++|||||||++. +.+..+++.| .+++++.+.- ......+++++++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence 578999999999999999999994 4577766444 7889987531 1112334567888776
No 295
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.05 E-value=6e-07 Score=86.34 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=44.9
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhh---ccceEecCCc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR---SRLTIIPQDP 549 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr---~~i~~V~Qdp 549 (602)
.+++|+.++|+|+||||||||++.+++...++.|.+.+.+.+. +..+++ ..+++.+|+.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~ 80 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEY 80 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGG
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHH
Confidence 5789999999999999999999999998888888888766443 222222 2466666643
No 296
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=98.05 E-value=6.6e-07 Score=96.37 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=34.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
+.++|+|+|||||||++++|+|+++|++|.|.++|.+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 6799999999999999999999999999999998865
No 297
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.03 E-value=1.5e-06 Score=82.55 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=27.2
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEP 518 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~ 518 (602)
++|+.++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 47899999999999999999999999976
No 298
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.02 E-value=1.9e-06 Score=81.19 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=40.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
++++|+|+|||||||++++|++.+ |.+.+++.++... ....+...++++|+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTD 80 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCC
Confidence 899999999999999999999987 8999998776531 11223356777775
No 299
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.01 E-value=2.9e-06 Score=80.25 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=37.8
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~ 554 (602)
++.+|++++|+|++||||||+++.|.+.++ ++.+++||++++++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 467789999999999999999999999874 37788888877765
No 300
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.01 E-value=5.8e-07 Score=89.44 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=57.9
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc-ccc-cchhcccC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV-LFS-GTLRLNLD 561 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~-lf~-~Tv~~nl~ 561 (602)
.+++++++| ++|+||||||||||+++|++..+ .|.|.+++.++........++++++++|++. .+. -++.+|++
T Consensus 67 ~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 67 EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 142 (278)
T ss_dssp HTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHH
T ss_pred HcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhH
Confidence 478888888 99999999999999999999985 7999999887755544455667888999874 332 25666663
No 301
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.00 E-value=2e-06 Score=81.17 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=39.3
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCC
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~ 533 (602)
...+|++++|+|++||||||+++.|.+.+++..|.|.+.+.|....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 3567899999999999999999999999988899998876655443
No 302
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.00 E-value=7.3e-06 Score=83.83 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=38.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceE-EECCeecCCCChHHHhhccceecc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTI-IIDGVDIRTLGLHTLRSRLTIIPQ 267 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I-~i~g~~~~~~~~~~~~~~i~~v~Q 267 (602)
+++.|.||+|||||||+..+++...+..|.+ ++++.... . ..+.+++++.+|
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~ 114 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLK 114 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchh
Confidence 8999999999999999999999988877876 55554322 1 224455666555
No 303
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.00 E-value=6.3e-07 Score=87.85 Aligned_cols=73 Identities=18% Similarity=0.127 Sum_probs=56.6
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc-ccc-cchhccc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV-LFS-GTLRLNL 560 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~-lf~-~Tv~~nl 560 (602)
.+++++++| +.|+||||||||||+++|++..+ .|.+.++|.++........++++++++|++. .+. -++.+|+
T Consensus 43 ~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 43 EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp HTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETH
T ss_pred HcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhh
Confidence 477888888 99999999999999999999985 7999999877755444455667888888763 232 2455666
No 304
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.99 E-value=2.4e-06 Score=78.42 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=40.3
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhc-cceEecCCc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRS-RLTIIPQDP 549 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~-~i~~V~Qdp 549 (602)
.+|++++|+|++||||||++++|++.+ |.+.+++.++.. ...+++ .+++.+|++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~ 60 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDD 60 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcc
Confidence 358899999999999999999999976 889999876642 112222 356666653
No 305
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.98 E-value=1.7e-06 Score=80.75 Aligned_cols=38 Identities=34% Similarity=0.470 Sum_probs=33.3
Q ss_pred eEEEECCCCCChHHHHHHHHhccCC-----------CCceEEECCeecC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEP-----------ADGTIIIDGVDIR 531 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~-----------~~G~I~i~g~~i~ 531 (602)
+++|+|+||||||||++.++|...+ ++|+|.++|+++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 6899999999999999999998765 5789999997653
No 306
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.97 E-value=3e-06 Score=79.15 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=40.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC-------------CCCceEEECCeecCCCChHHHhhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE-------------PADGTIIIDGVDIRTLGLHTLRSRL 262 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~-------------~~~G~I~i~g~~~~~~~~~~~~~~i 262 (602)
++++|+||||||||||++.|.+.++ |..|+ ++|++..-++...+++.+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i 80 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI 80 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh
Confidence 8899999999999999999999886 66777 688877777777776654
No 307
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.97 E-value=2.4e-07 Score=94.85 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=30.6
Q ss_pred ceEEEEeccCCChhHHHHHHhccc----CCCCceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~----~~~~G~I~i~g~~ 249 (602)
+.++|+||||+|||||+++|+|.+ .+.+|.+..++.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 569999999999999999999998 5667766655443
No 308
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.96 E-value=5.1e-06 Score=74.24 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=35.2
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCc--eEEECCeecC
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADG--TIIIDGVDIR 531 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G--~I~i~g~~i~ 531 (602)
+|+.++|+|+||||||||++++++.+.+ +| .+.+++.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhh
Confidence 7999999999999999999999999987 68 7888876544
No 309
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=97.96 E-value=2e-06 Score=79.52 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=28.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC-CCceEEE
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP-ADGTIII 245 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~-~~G~I~i 245 (602)
++++|+||||||||||+++|.+.+++ ..|.|..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 78999999999999999999999874 4555543
No 310
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.96 E-value=2e-06 Score=99.90 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=42.7
Q ss_pred ccceeeEEec-------ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccce-EecCCccccc
Q psy3001 482 AGLVGLSVSY-------AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLT-IIPQDPVLFS 553 (602)
Q Consensus 482 ~~~~~l~i~~-------Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~-~V~Qdp~lf~ 553 (602)
..+++|++.. |++++|+||||||||||+|++ |++.+ ..++| ||||++. .
T Consensus 772 ~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~--~ 828 (1022)
T 2o8b_B 772 PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC--R 828 (1022)
T ss_dssp CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE--E
T ss_pred eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC--C
Confidence 3456777776 899999999999999999999 99863 23566 9999873 2
Q ss_pred cchhccc
Q psy3001 554 GTLRLNL 560 (602)
Q Consensus 554 ~Tv~~nl 560 (602)
-||.+++
T Consensus 829 l~v~d~I 835 (1022)
T 2o8b_B 829 LTPIDRV 835 (1022)
T ss_dssp ECCCSBE
T ss_pred CCHHHHH
Confidence 2444443
No 311
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.94 E-value=8.4e-06 Score=92.48 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=47.9
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccc-cCChhHHHHHHHHHHHhccc-cEEEE-eeeccccccc
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATA-AIDLETDDLIQSTIRSEFAH-CTVLT-IAHRLNTIID 413 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts-~LD~~~~~~i~~~l~~~~~~-~tvi~-itH~l~~i~~ 413 (602)
+.|+.+|..++++++.+++++|+|||.. ++|.+....+...+.....+ +++++ +||+.+.+..
T Consensus 192 T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 192 TDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred CHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 3699999999999999999999999997 88877655555555444433 55555 6898766654
No 312
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.86 E-value=5.7e-06 Score=85.08 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=35.2
Q ss_pred eEEEECCCCCChHHHHHHHHh-ccCCCCceEEECCeecCCCChhhhhccceEecCCccc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR-IIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL 551 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g-~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l 551 (602)
.+.|+||+|+||||++++++| ++.|+.|++.++|.++.... ..+..+++++|++++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHL 94 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceE
Confidence 389999999999999999999 89999999999998765322 226679999998865
No 313
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.84 E-value=7.3e-06 Score=75.68 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=33.1
Q ss_pred eeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceE
Q psy3001 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243 (602)
Q Consensus 202 ~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I 243 (602)
+++++.+.++ +++|+|+||||||||+++|.+++.+..|..
T Consensus 18 ~~~~~~~~~g--~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 57 (182)
T 3kta_A 18 KKVVIPFSKG--FTAIVGANGSGKSNIGDAILFVLGGLSAKA 57 (182)
T ss_dssp SCEEEECCSS--EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred ccEEEecCCC--cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 4566666654 899999999999999999999988876643
No 314
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.83 E-value=3.6e-05 Score=79.43 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=30.6
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhc--ccCCCCceEEE
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFR--IIEPADGTIII 245 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g--~~~~~~G~I~i 245 (602)
.+++++++. ..++|||++|||||||++.|.| ++++.+|.+..
T Consensus 26 ~l~~i~~~l----p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~ 69 (360)
T 3t34_A 26 ALPTLWDSL----PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (360)
T ss_dssp CC----CCC----CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred ccccccccC----CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence 355555555 4799999999999999999999 66777776543
No 315
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.81 E-value=1.1e-06 Score=84.29 Aligned_cols=56 Identities=29% Similarity=0.338 Sum_probs=44.5
Q ss_pred ceEEEEeccCCChhHHHHHHhccc---CCCCceEEE--------CCeecCC-CChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII---EPADGTIII--------DGVDIRT-LGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~---~~~~G~I~i--------~g~~~~~-~~~~~~~~~i~~v~Q~ 268 (602)
.+++|+|++||||||++++|++.+ .++.|.+.. +|.++.. .....+++.+++++|+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 579999999999999999999877 678888876 6666542 3445677888888875
No 316
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.81 E-value=3.1e-06 Score=78.19 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=34.0
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCce
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGT 522 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~ 522 (602)
-+|++.+|+.++|+||||+|||||++++++.+.|++|.
T Consensus 31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 46777889999999999999999999999999877774
No 317
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.79 E-value=3.1e-05 Score=79.79 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEe-cccccCChhHHHHHHHHHHHhccccEEEEee--eccc
Q psy3001 352 VGQRQLICLARALLRKTKILILD-EATAAIDLETDDLIQSTIRSEFAHCTVLTIA--HRLN 409 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLD-Epts~LD~~~~~~i~~~l~~~~~~~tvi~it--H~l~ 409 (602)
.+++|++. +.+...++-++++| ++++++|.+....+...+.....++.+|+|. ||+.
T Consensus 234 ~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 234 EIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp HHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred HHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 58888776 55555677789999 9999999887766666666544477888888 6653
No 318
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.79 E-value=7.3e-06 Score=82.27 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=49.3
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh-hh---h--hccceEecCC
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HT---L--RSRLTIIPQD 548 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~-~~---l--r~~i~~V~Qd 548 (602)
.+++..+|++++|+|+|||||||++..|++.++++.|+|.+.+.|...... ++ + +.++.++++.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~ 166 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHS 166 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCS
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecC
Confidence 566678899999999999999999999999999998999998877643221 11 1 2356677663
No 319
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.78 E-value=3.8e-06 Score=77.43 Aligned_cols=41 Identities=32% Similarity=0.486 Sum_probs=34.2
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCc--eEEECCeecC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADG--TIIIDGVDIR 531 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G--~I~i~g~~i~ 531 (602)
.+|+.++|+|++||||||++++|.+.+++ .| .+.+|+..+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 36889999999999999999999998866 67 6777876554
No 320
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=97.77 E-value=1.1e-05 Score=83.70 Aligned_cols=41 Identities=24% Similarity=0.466 Sum_probs=36.9
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHh------------ccCCCCceEEECCe
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFR------------IIEPADGTIIIDGV 528 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g------------~~~~~~G~I~i~g~ 528 (602)
.++.|+++||+|+||+|||||+++|+| ..+|+.|.+.++|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 457899999999999999999999999 67799999999873
No 321
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.76 E-value=6.6e-06 Score=84.92 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=46.2
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf 552 (602)
.+++++++|+.++|+||+|||||||+++|+|.. .|++..-. .+.+..+..++++||.+.+|
T Consensus 161 ~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~-----~~~~~~~~~lg~~~q~~~~l 221 (377)
T 1svm_A 161 CMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN-----LPLDRLNFELGVAIDQFLVV 221 (377)
T ss_dssp HHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS-----SCTTTHHHHHGGGTTCSCEE
T ss_pred hcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe-----ccchhHHHHHHHhcchhHHH
Confidence 478899999999999999999999999999974 67765511 11122233588999987543
No 322
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.76 E-value=1.1e-05 Score=75.58 Aligned_cols=37 Identities=32% Similarity=0.454 Sum_probs=31.1
Q ss_pred eEEEECCCCCChHHHHHHHHhccC-----CC------CceEEECCeec
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE-----PA------DGTIIIDGVDI 530 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~-----~~------~G~I~i~g~~i 530 (602)
+++|+|+||||||||++.++|... |+ .|+|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 589999999999999999999742 33 57899999765
No 323
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=97.75 E-value=1.4e-05 Score=83.62 Aligned_cols=33 Identities=39% Similarity=0.475 Sum_probs=31.5
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.++|+++.|+.|+|+|+||||||||+++|+|..
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 589999999999999999999999999999984
No 324
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=97.73 E-value=1.3e-05 Score=75.49 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=26.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADG 241 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G 241 (602)
++++|+|+|||||||++++|++.+.|+.|
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 89999999999999999999999977655
No 325
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.73 E-value=0.00011 Score=76.89 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=33.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
.+++++|++||||||++..|++.+.+..++|.+-+.|.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 78999999999999999999999988888887755443
No 326
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.72 E-value=9.8e-06 Score=76.28 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=36.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG 254 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~ 254 (602)
++++|+|+|||||||+++.|.+.+++..|.|.+.+.|.....
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 789999999999999999999999999999988766554433
No 327
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.72 E-value=1.4e-05 Score=79.42 Aligned_cols=34 Identities=32% Similarity=0.332 Sum_probs=30.1
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceE
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI 523 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I 523 (602)
.+.+|++++|+|+||||||||++.+++... .|++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~ 59 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD 59 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC
Confidence 578999999999999999999999999764 5665
No 328
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.71 E-value=3.9e-05 Score=81.29 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=21.3
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+++++|+.|+|||||++.++|..
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 329
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.65 E-value=1.8e-05 Score=76.21 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=31.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~ 251 (602)
++++|+|+|||||||++++|+|. .|+|.+.+.+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~ 55 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVE 55 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHH
Confidence 89999999999999999999998 788999887653
No 330
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.63 E-value=2e-05 Score=73.94 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=25.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
..+++|++.+|+.++|+|++||||||+.+.|++.+
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34699999999999999999999999999999876
No 331
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.63 E-value=3.5e-05 Score=81.68 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=43.6
Q ss_pred hCCCeEEEecccccCCh-hHHHHHHHHHHHhc-cccEEEEeeecc-ccccc-CCeEEE-EeCceEEeecCh
Q psy3001 366 RKTKILILDEATAAIDL-ETDDLIQSTIRSEF-AHCTVLTIAHRL-NTIID-SDRVLV-LDKGLVVEFDSP 431 (602)
Q Consensus 366 ~~p~iliLDEpts~LD~-~~~~~i~~~l~~~~-~~~tvi~itH~l-~~i~~-~d~i~~-l~~G~i~~~g~~ 431 (602)
.+|++|++||+....+. .+...+...+.... .++.+|++||+. ..+.. .+++.- +..|.++....+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 38999999999888764 56677777776643 468899999984 33332 233322 345666665544
No 332
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.63 E-value=1.9e-05 Score=79.05 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=36.1
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCc-eEEECCeecC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADG-TIIIDGVDIR 531 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G-~I~i~g~~i~ 531 (602)
.+|++++++|+|||||||++..|++.+.+++| +|.+-+.|..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 47899999999999999999999999988889 6776655553
No 333
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.62 E-value=1.9e-05 Score=74.14 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=24.4
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.....+|+||...++ ++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~-~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAM-VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CC-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCC-CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345789999999887 899999999999999999999876
No 334
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.61 E-value=2.9e-06 Score=90.87 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=42.2
Q ss_pred EEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
+.|+||+|+|||||+++|++... .+.+.+++.++.+.......+.+..++|.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~ 118 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET 118 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHH
Confidence 89999999999999999999875 78999999887665555555566666665
No 335
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.61 E-value=2.8e-05 Score=78.31 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=27.4
Q ss_pred eEEEECCCCCChHHHHHHHHhccC--CCCceEEE
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE--PADGTIII 525 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~--~~~G~I~i 525 (602)
++||+|+||||||||+++|.++++ |+.|.+.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 699999999999999999999987 45666443
No 336
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.61 E-value=1.7e-05 Score=75.07 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=25.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP 238 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~ 238 (602)
++++|+||||||||||++.|++.+++
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 89999999999999999999999987
No 337
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.60 E-value=9.4e-06 Score=82.10 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=40.6
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~ 252 (602)
+++|...++ ++++++|+||+||||++..|++.+.+..|+|.+.+.|...
T Consensus 97 ~l~~~~~~~-~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 97 RIDFKENRL-NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp CCCCCTTSC-EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CccccCCCC-eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 344443344 8999999999999999999999999999999998777643
No 338
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.59 E-value=0.00041 Score=69.21 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhH----------HHHHHHHHHHhc-----cccEEEEeeecccccc
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLET----------DDLIQSTIRSEF-----AHCTVLTIAHRLNTII 412 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~----------~~~i~~~l~~~~-----~~~tvi~itH~l~~i~ 412 (602)
++++++..++++...+|.+|++||+.+.++... ...+...+.... .+..+|.+|++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence 466777778888888999999999988765422 122333343322 1245777888876543
No 339
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.54 E-value=6.3e-05 Score=77.12 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=28.9
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHh
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g 514 (602)
..++|++.+| +++|+|+||||||||+++|.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 18 APGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3588999999 999999999999999999997
No 340
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.52 E-value=3.9e-05 Score=77.33 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=30.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC--CCCceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE--PADGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~--~~~G~I~i~g~~ 249 (602)
-++||+|+||||||||+++|.+++. |+.|.+.+-+.|
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 4799999999999999999999987 567776554333
No 341
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.52 E-value=3.2e-05 Score=70.80 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=31.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~ 251 (602)
++++|+|+|||||||+++.|++.+ |.+.+++.++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 789999999999999999999976 78888886654
No 342
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.50 E-value=3.3e-05 Score=79.23 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=35.6
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~ 531 (602)
.+.+|+|+|++|||||||++.|.|.+.++.|+|.+.+.|..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 46689999999999999999999999888999888776654
No 343
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.48 E-value=0.00045 Score=71.53 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=32.6
Q ss_pred hCCCeEEEecccccCChhHHHHHHHHHHHhc----cccEEEEeeecccc
Q psy3001 366 RKTKILILDEATAAIDLETDDLIQSTIRSEF----AHCTVLTIAHRLNT 410 (602)
Q Consensus 366 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~l~~ 410 (602)
.+|.++++||+... |+.....+...+.... .+.++|+++|+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45789999999766 8777777766665433 36789999998853
No 344
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.48 E-value=5e-05 Score=69.24 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=27.6
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g 527 (602)
|++++|+|++||||||++++|++.+.+ +.+|+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 568999999999999999999998754 56665
No 345
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.45 E-value=2.7e-05 Score=84.36 Aligned_cols=38 Identities=34% Similarity=0.393 Sum_probs=34.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCc-eEE-ECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADG-TII-IDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G-~I~-i~g~~~ 250 (602)
++++|+|+||||||||+++|+|.+.|++| ++. +||.++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 89999999999999999999999999987 784 888654
No 346
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.44 E-value=2e-05 Score=76.65 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=31.9
Q ss_pred ccceeeEEec---ceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 482 AGLVGLSVSY---AMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 482 ~~~~~l~i~~---Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+++++|++.+ |++++|+|++||||||++++|++.+
T Consensus 35 l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 35 LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4468999999 9999999999999999999999855
No 347
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.42 E-value=6.4e-05 Score=86.20 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=33.2
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHH--------HhccCCCCc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLAL--------FRIIEPADG 521 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L--------~g~~~~~~G 521 (602)
+++|++..|++++|+|||||||||++|++ .|.+-|.++
T Consensus 654 disl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 654 DVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp EEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred cceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 57888889999999999999999999999 787766554
No 348
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.41 E-value=5.6e-05 Score=80.91 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=56.9
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc-cccc-chhcccC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV-LFSG-TLRLNLD 561 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~-lf~~-Tv~~nl~ 561 (602)
.+++.+++| +.|+||+|+|||||+++|++... .+.+.++|.++........++++..++|++. .... .+-+|++
T Consensus 58 ~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId 133 (499)
T 2dhr_A 58 EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 133 (499)
T ss_dssp TTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGG
T ss_pred hccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHH
Confidence 477888888 99999999999999999999975 7899999988766554455567888888874 2222 3456664
No 349
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.40 E-value=5.3e-05 Score=83.75 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=48.3
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCC-ceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPAD-GTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~-G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
+++.+..|+.+.|+||+|+|||||+++|++++++.. |.+.+++.+.... ...++++||..
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~ 113 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQ 113 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTH
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecch
Confidence 667778889999999999999999999999999887 7788877654432 33577877654
No 350
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.39 E-value=3.9e-05 Score=83.58 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=38.4
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
+++++ +|+.+.|+||+|+|||||+++|++.+.+..|+|.++|..-........++.+|+.+|..
T Consensus 102 ~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~ 165 (543)
T 3m6a_A 102 LTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRI 165 (543)
T ss_dssp HSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CH
T ss_pred hcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHH
Confidence 34444 79999999999999999999999999998899988874322211223345677777765
No 351
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=97.38 E-value=0.0005 Score=69.67 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=27.2
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.|+.+.-.+.+| +++.|.|++|+|||||+.-++...
T Consensus 35 ~LD~~~gGl~~G-~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 35 QLDNYTSGFNKG-SLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHHHCSBCTT-CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCC-cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344444345566 999999999999999998877654
No 352
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.37 E-value=8.1e-05 Score=78.72 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=30.2
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCc
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG 521 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G 521 (602)
.+++..|++++|+||||||||||+++|+++..+.++
T Consensus 20 ~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 20 KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 366778999999999999999999999999888653
No 353
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.37 E-value=7.9e-05 Score=84.31 Aligned_cols=34 Identities=26% Similarity=0.166 Sum_probs=30.1
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
..+++|+ ..|++++|+||||||||||+|+++|+.
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3457777 789999999999999999999999974
No 354
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.36 E-value=0.0027 Score=76.74 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=32.5
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccCCCCceE-EECCe
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI-IIDGV 528 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I-~i~g~ 528 (602)
+.+|+.+.|.|++|+|||||+..++.......|.+ ++++.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 89999999999999999999999988765444554 45553
No 355
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.34 E-value=7.8e-05 Score=70.73 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=32.6
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCe
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 528 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~ 528 (602)
.+++|++++|+|+||||||||++.+++ ++..+.++++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence 478999999999999999999999999 444556677654
No 356
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.33 E-value=5.7e-05 Score=86.41 Aligned_cols=35 Identities=26% Similarity=0.118 Sum_probs=30.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
...+++|++..|++++|+||||||||||+|++.++
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 34468888899999999999999999999998753
No 357
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.33 E-value=0.00063 Score=65.52 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=23.8
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCCCc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPADG 241 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~~G 241 (602)
.++|+|++|+|||||++.|.|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 4899999999999999999997665544
No 358
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.32 E-value=5.5e-05 Score=77.35 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=39.7
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeec
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i 530 (602)
+++....|.+++|+|++|+|||||++.|++.+.+..|++.+-+.|.
T Consensus 49 l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 49 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 5677788999999999999999999999999988888887665554
No 359
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.30 E-value=4.1e-05 Score=72.53 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=38.5
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCc--eEEECCeecC
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG--TIIIDGVDIR 531 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G--~I~i~g~~i~ 531 (602)
+.+.+|..+.|+|++||||||+++.|.+.++|..| .+.++|.++.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 44567889999999999999999999999987788 8889876553
No 360
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=97.30 E-value=5e-05 Score=82.33 Aligned_cols=68 Identities=26% Similarity=0.281 Sum_probs=49.3
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhc----------------------c----------------CCCCceEE
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI----------------------I----------------EPADGTII 524 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~----------------------~----------------~~~~G~I~ 524 (602)
+.+++++.+| ..+|+|+||||||||+.+|..+ + ...+++++
T Consensus 52 ~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~~~ 130 (517)
T 4ad8_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAAR 130 (517)
T ss_dssp SCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCEEE
T ss_pred eeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcEEE
Confidence 4578888888 8999999999999999999665 3 22356788
Q ss_pred ECCeecCCCChhhh-hccceEecCCccc
Q psy3001 525 IDGVDIRTLGLHTL-RSRLTIIPQDPVL 551 (602)
Q Consensus 525 i~g~~i~~~~~~~l-r~~i~~V~Qdp~l 551 (602)
++|++++.....++ ...+.+++|+-.+
T Consensus 131 ing~~v~~~~l~~~~~~li~i~~q~~~~ 158 (517)
T 4ad8_A 131 LSGEVVSVRELQEWAQGRLTIHWQHSAV 158 (517)
T ss_dssp SSSSBCCHHHHHHHHTTTEEEESGGGGG
T ss_pred ECCEECCHHHHHHHhhhheEEeCCchHH
Confidence 88877654334444 3346788887543
No 361
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.30 E-value=0.0014 Score=66.34 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.7
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+++.|.|++|||||||+..++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH
Confidence 899999999999999998887653
No 362
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.27 E-value=0.0001 Score=67.10 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP 238 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~ 238 (602)
++++|+|+|||||||++++|++.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 67999999999999999999998754
No 363
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.26 E-value=3.4e-05 Score=79.59 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=42.2
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
.++++++..+++ ++++|+||+|||||||+++|+|.+ +|.+.... . +...++..+++++|.
T Consensus 158 ~l~~~~~~i~~~-~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~ 217 (377)
T 1svm_A 158 FLKCMVYNIPKK-RYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQ 217 (377)
T ss_dssp HHHHHHHCCTTC-CEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTC
T ss_pred HHHhcccccCCC-CEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcch
Confidence 456667777776 899999999999999999999964 67765511 1 111223346777764
No 364
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.25 E-value=0.00013 Score=75.33 Aligned_cols=32 Identities=31% Similarity=0.253 Sum_probs=27.5
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhc
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
..+++++..| .++|+|+||||||||+.+|+..
T Consensus 15 ~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 15 KNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred cceEEecCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 3578888888 7889999999999999999843
No 365
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.22 E-value=4.6e-05 Score=73.75 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=39.6
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHH-HhccCCCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLAL-FRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L-~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
+-.+.+|+.+.|+|+||||||||+..+ .+..+...+.+++++.. ......+...++++.+|++
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~~~~~~ 80 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGWDVKPY 80 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTCCCHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCCCHHHH
Confidence 345789999999999999999996555 55555444555565432 1111112223577777654
No 366
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.21 E-value=0.00016 Score=73.84 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=45.9
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceE-EECCeecCCCChhhhhccceEecCCccc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI-IIDGVDIRTLGLHTLRSRLTIIPQDPVL 551 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I-~i~g~~i~~~~~~~lr~~i~~V~Qdp~l 551 (602)
-+.+|+++.|.|++|||||||+..+++...+..|.+ ++++.... .....+++++.+|+..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---~~~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---DPVYAKNLGVDLKSLLI 118 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CHHHHHHHTCCGGGCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---chHHHHHcCCchhhhhh
Confidence 367899999999999999999999999887777765 66654322 22245567887777644
No 367
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=97.21 E-value=0.00018 Score=74.02 Aligned_cols=53 Identities=32% Similarity=0.421 Sum_probs=38.1
Q ss_pred ccee-EEEECCCCCChHHHHHHHHhccC-----------CCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 491 YAMQ-VGIVGRTGAGKSSLTLALFRIIE-----------PADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 491 ~Ge~-v~ivG~nGsGKSTLl~~L~g~~~-----------~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
.|-. |+|+|++|||||||++.|+|... ++.|+|.++|.++. +..-.|++.|.|
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp 241 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIP 241 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCC
Confidence 3444 99999999999999999999865 56788999986553 223466666655
No 368
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.18 E-value=0.00023 Score=64.81 Aligned_cols=41 Identities=44% Similarity=0.449 Sum_probs=30.3
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCC------------CCceEEECCeec
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEP------------ADGTIIIDGVDI 530 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~------------~~G~I~i~g~~i 530 (602)
++|.+|+|+|++|+|||||++.++|...+ ..+.+.++|.++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 54 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence 35778999999999999999999986421 125667777543
No 369
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.16 E-value=0.00012 Score=71.22 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=22.5
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
++++|+|++||||||+.++|++.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 789999999999999999999865
No 370
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.14 E-value=0.00018 Score=69.02 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=31.7
Q ss_pred ceeeEEe---cceeEEEECCCCCChHHHHHHHHhccCCCCceEEE
Q psy3001 484 LVGLSVS---YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII 525 (602)
Q Consensus 484 ~~~l~i~---~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i 525 (602)
..++++. +|..++|.|++||||||+++.|...+++ .+.+..
T Consensus 15 ~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 15 TENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -----CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 4555555 8999999999999999999999999987 666654
No 371
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.14 E-value=0.0007 Score=67.85 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCce
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGT 242 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~ 242 (602)
..+.|+||+|+||||+++.+++...+..|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 568999999999999999999987665553
No 372
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.13 E-value=0.00059 Score=70.41 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPA 239 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~ 239 (602)
..+.|.|++|+|||||++.+++...+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 679999999999999999999876543
No 373
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.12 E-value=0.00011 Score=67.60 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=30.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCc--eEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADG--TIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G--~I~i~g~~~ 250 (602)
++++|+|++||||||+++.|++.+.+ .| .+.+++..+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 78999999999999999999998866 56 666665443
No 374
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.11 E-value=0.00097 Score=68.06 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
+++.|.|++|||||||+..++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999988875
No 375
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.11 E-value=0.0019 Score=62.76 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.-+.|+||+|+||||+++++++...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3489999999999999999998764
No 376
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.10 E-value=0.0023 Score=66.88 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=36.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~ 252 (602)
++++++|++||||||++..|++.+.+..|+|.+.+.|...
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 8999999999999999999999999999999987766543
No 377
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.09 E-value=0.00011 Score=69.01 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=25.6
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
..+|..++|+|++|||||||++.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34678899999999999999999998774
No 378
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.09 E-value=0.00033 Score=62.30 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=23.1
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHh
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g 514 (602)
..+.+.+| ..+|+||||||||||+.+|.-
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34455544 789999999999999999963
No 379
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.06 E-value=0.00026 Score=74.06 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=41.3
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~ 532 (602)
.++|+ ++++++++|++||||||++..|++.+.+..|+|.+.+.|+..
T Consensus 92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp CCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred cccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 46666 899999999999999999999999999998999987766644
No 380
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.04 E-value=0.00016 Score=74.12 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=34.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~ 252 (602)
.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 7899999999999999999999999999999887765543
No 381
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.00 E-value=8.2e-05 Score=71.34 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=41.3
Q ss_pred eeEEEECCCCCChHHHHHHHHh---ccCCCCceEE--------ECCeecCCCC-hhhhhccceEec------CCcccccc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFR---IIEPADGTII--------IDGVDIRTLG-LHTLRSRLTIIP------QDPVLFSG 554 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g---~~~~~~G~I~--------i~g~~i~~~~-~~~lr~~i~~V~------Qdp~lf~~ 554 (602)
-+++|+|++||||||+.+.|+. +.-.+.|.+. -.|.++.... ..++...+.+.+ |+.+++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~ 89 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGE 89 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCe
Confidence 4799999999999999999984 4444555542 2244433321 234445566655 33344444
Q ss_pred chhcccC
Q psy3001 555 TLRLNLD 561 (602)
Q Consensus 555 Tv~~nl~ 561 (602)
.|.++|.
T Consensus 90 ~v~~~ir 96 (233)
T 3r20_A 90 DVSSEIR 96 (233)
T ss_dssp ECTTGGG
T ss_pred ehhhhhc
Confidence 5655543
No 382
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.99 E-value=0.0003 Score=66.05 Aligned_cols=29 Identities=28% Similarity=0.610 Sum_probs=24.5
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g 527 (602)
++||+|++||||||+.+.|+++ |...+|+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 5899999999999999999983 5555654
No 383
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.99 E-value=0.00031 Score=67.34 Aligned_cols=47 Identities=15% Similarity=0.371 Sum_probs=32.1
Q ss_pred EEEeeeEEEEe---cCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 199 VEFKDYKVRYR---EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 199 i~~~~vs~~~~---~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
+.+.++++.+. .| .+++|.|++||||||+++.|...+.+ .+.+....
T Consensus 11 ~~~~~~~~~~~~~~~g-~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMS-AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp ---------CCCCCCC-EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred cCccCCCeeEeecCCC-eEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 45666666664 44 89999999999999999999999988 77776543
No 384
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.99 E-value=0.0027 Score=62.63 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=21.5
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|.||+|+|||||++.++..+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 458999999999999999998864
No 385
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.99 E-value=0.0022 Score=64.69 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
..+.|.||+|+|||||++.+++...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 4589999999999999999998654
No 386
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.98 E-value=0.0002 Score=71.52 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=40.8
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~ 532 (602)
++++.+ |++++++|++|+||||++..|++.+.+..|++.+.+.|...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 667766 99999999999999999999999998888899887766543
No 387
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.94 E-value=0.0003 Score=74.54 Aligned_cols=39 Identities=38% Similarity=0.526 Sum_probs=32.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC------------CCCceEEECCeecC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE------------PADGTIIIDGVDIR 251 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~------------~~~G~I~i~g~~~~ 251 (602)
-.++|+|++|+|||||++.|.|... +..|.+.++|.++.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~ 231 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV 231 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEE
Confidence 4599999999999999999999853 66789999987553
No 388
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.94 E-value=0.00041 Score=61.68 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=20.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.+.+|+|||||||||++.+|.-.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998743
No 389
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.93 E-value=0.00037 Score=72.00 Aligned_cols=41 Identities=24% Similarity=0.445 Sum_probs=33.3
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhc-----------cCCCCceEEECCe
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRI-----------IEPADGTIIIDGV 528 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~-----------~~~~~G~I~i~g~ 528 (602)
.+..|.+++|+|++|+|||||+++|+|. ..|..|.+.+++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3456788999999999999999999998 6778888877653
No 390
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.93 E-value=0.0042 Score=69.96 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=24.0
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+++...+-+.||.|+|||.|++++++...
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 34444589999999999999999998864
No 391
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.93 E-value=0.00034 Score=64.56 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=34.9
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceE-EECCeec
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI-IIDGVDI 530 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I-~i~g~~i 530 (602)
...+|..+.|+|++||||||+++.|++.+.+..|.+ .+++.++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 345788999999999999999999999988777765 4665443
No 392
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.91 E-value=0.00082 Score=68.50 Aligned_cols=27 Identities=33% Similarity=0.338 Sum_probs=23.7
Q ss_pred EEEEeccCCChhHHHHHHhcccCCCCc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIEPADG 241 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~~~~G 241 (602)
+.+.||+|+||||+++++++.+.+..+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 899999999999999999998765443
No 393
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.88 E-value=0.0013 Score=61.32 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
..+.|.|++|+|||||++.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999988654
No 394
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.84 E-value=0.00058 Score=64.17 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=23.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.+++|+|++||||||+++.|.+.++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 7899999999999999999999864
No 395
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.84 E-value=0.00019 Score=67.83 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=32.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCc--eEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADG--TIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G--~I~i~g~~ 249 (602)
.+++|+|++||||||+.+.|.+.+.|..| .+.+++.+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 78999999999999999999999988888 78887543
No 396
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.84 E-value=0.00086 Score=60.34 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.2
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 397
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.82 E-value=0.0046 Score=61.73 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=22.0
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|.||+|+|||||++++++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh
Confidence 568999999999999999999865
No 398
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=96.79 E-value=0.00048 Score=70.86 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=31.9
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHh--ccCCCCceEEECC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFR--IIEPADGTIIIDG 527 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g--~~~~~~G~I~i~g 527 (602)
.++++++ .|+|+|.+|||||||+++|.| ++++.+|.+...+
T Consensus 29 ~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 29 TLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp ---CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 3556666 799999999999999999999 7788888765443
No 399
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.79 E-value=0.00046 Score=64.56 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=28.3
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeec
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i 530 (602)
..+|+|+|++||||||+++.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 3469999999999999999999876 5566765444
No 400
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.79 E-value=0.018 Score=58.86 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=22.6
Q ss_pred ecCCceEEEEeccCCChhHHHHHHhccc
Q psy3001 209 REGLELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 209 ~~~~e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+++ +++.|.|++|||||||+..++...
T Consensus 61 ~~G-~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 61 PMG-RIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp ETT-SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCC-eEEEEECCCCCCHHHHHHHHHHHH
Confidence 344 899999999999999998777654
No 401
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.79 E-value=0.00057 Score=62.43 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=29.4
Q ss_pred eeEEEECCCCCChHHHHHHHHhccCCC---CceEEECCee
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVD 529 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~~~---~G~I~i~g~~ 529 (602)
..++|+|++|||||||++.|++.+++. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 368999999999999999999986543 3677777644
No 402
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.77 E-value=0.00061 Score=74.06 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=35.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhh
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~ 273 (602)
+.++|+||||+|||||+++|++...+..|.|.++|......-....++.++..++.....|
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~ 169 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGM 169 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHH
Confidence 7899999999999999999999999998998887753322112223456677776544433
No 403
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.77 E-value=0.00065 Score=62.37 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.7
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|+++|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
No 404
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.77 E-value=0.00019 Score=81.74 Aligned_cols=63 Identities=17% Similarity=0.173 Sum_probs=50.7
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
.++.+++|+.+.|+|++|||||||+++|++.+++. -+.+++.++......+..+++..++|++
T Consensus 231 ~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~a 293 (806)
T 1ypw_A 231 KAIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEEA 293 (806)
T ss_dssp TSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHHSSSSTTHHHHHHHHHHHHH
T ss_pred HhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHhhhhhhhhHHHHHHHHHHHH
Confidence 56788999999999999999999999999997543 4778887776555555666777788876
No 405
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.75 E-value=0.00059 Score=63.86 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=20.2
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
No 406
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.73 E-value=0.00066 Score=62.56 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=26.3
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
.++++..+|..++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 36778888999999999999999999999876
No 407
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.72 E-value=0.00018 Score=73.46 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=33.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
.+++|+|++|+|||||++.|++.+.+..|++.+-+.+.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 78999999999999999999999998888888765554
No 408
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.69 E-value=0.00033 Score=65.79 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=23.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.+++|+|+|||||||+.+.|...++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 7899999999999999999998774
No 409
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.67 E-value=0.0013 Score=70.16 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=42.4
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHh--ccCCCCceEEECCeecCCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFR--IIEPADGTIIIDGVDIRTL 533 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g--~~~~~~G~I~i~g~~i~~~ 533 (602)
.+.+.+.++..+.|+|.|||||||++++|.. +++++.|++.+-+.|.+..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~ 210 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKML 210 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchh
Confidence 4778888999999999999999999999986 6677778888877776653
No 410
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.65 E-value=0.0015 Score=62.29 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=33.4
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccc
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~ 412 (602)
+|.++++||.-. +|+.....+...+.....+..+|+++++...+.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 578999999755 787777777777765545677888888876543
No 411
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.65 E-value=0.0005 Score=64.34 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=26.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
.+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 579999999999999999999876 445555433
No 412
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.63 E-value=0.0045 Score=62.24 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccE--EEEeee
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCT--VLTIAH 406 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t--vi~itH 406 (602)
.++++|++.|...+.++++++.|+|...+ ..+...++.+. .+.. +|+|.|
T Consensus 136 ~~~~~~l~~a~~~l~~~~i~i~d~~~~~~-----~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 136 SEDWGKLSMAIGEISNSNINIFDKAGQSV-----NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp SSCHHHHHHHHHHHHTSCEEEECCSCCBH-----HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCCCCCH-----HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 48999999999999999999999986443 23333333332 2445 666665
No 413
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.62 E-value=0.00081 Score=62.91 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=20.2
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
+++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
No 414
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.58 E-value=0.00098 Score=64.88 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=34.8
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~ 531 (602)
....+..+.|+|++||||||+.+.|++.+. .+.+.+++..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 456678899999999999999999999875 366888886654
No 415
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.57 E-value=0.00088 Score=61.16 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=29.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~ 249 (602)
.+++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 679999999999999999999986543 3667766543
No 416
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.55 E-value=0.0014 Score=60.49 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=29.4
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHh----cc----CCCCceEEECCeecC
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFR----II----EPADGTIIIDGVDIR 531 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g----~~----~~~~G~I~i~g~~i~ 531 (602)
++++.+.. +|+++|++|+|||||++.+.+ .+ .++.+++.++|..+.
T Consensus 17 ~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~ 70 (190)
T 1m2o_B 17 LGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFT 70 (190)
T ss_dssp -------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEE
T ss_pred hhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEE
Confidence 55555555 689999999999999999998 22 233456777775443
No 417
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.54 E-value=0.0018 Score=58.11 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.6
Q ss_pred eEEEEeccCCChhHHHHHHhcccC
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998643
No 418
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.53 E-value=0.00033 Score=71.50 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=39.6
Q ss_pred eEEeccee--EEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC-CChhhhhccceEec
Q psy3001 487 LSVSYAMQ--VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-LGLHTLRSRLTIIP 546 (602)
Q Consensus 487 l~i~~Ge~--v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~-~~~~~lr~~i~~V~ 546 (602)
..+..|+. +.+.||+|+||||+++++++.+.+..+.+.+.+.+... ...+.+|..+..++
T Consensus 39 ~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~ 101 (340)
T 1sxj_C 39 KFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA 101 (340)
T ss_dssp HHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred HHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHH
Confidence 33445655 89999999999999999999987777665444433332 22344554444444
No 419
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.51 E-value=0.0011 Score=66.38 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.7
Q ss_pred cceeEEEECCCCCChHHHHHHHHhc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
++.+|+|+|++|+|||||++.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4457999999999999999999996
No 420
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.49 E-value=0.0018 Score=58.70 Aligned_cols=24 Identities=50% Similarity=0.365 Sum_probs=22.1
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..++|+|++|+|||||++.+.|..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999999864
No 421
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.44 E-value=0.0082 Score=57.48 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccce
Q psy3001 212 LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSV 291 (602)
Q Consensus 212 ~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~ 291 (602)
++.++++|+|||||||++.++........|. ...+.++.+.|.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~--------------------- 118 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPR--------------------- 118 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESS---------------------
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccc---------------------
Q ss_pred eeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC--------------ChhhHHH
Q psy3001 292 LYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG--------------NVGQRQL 357 (602)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg--------------s~Gq~Qr 357 (602)
........+.+............|..... ..|.-.+
T Consensus 119 ------------------------------~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~ 168 (235)
T 3llm_A 119 ------------------------------RISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLR 168 (235)
T ss_dssp ------------------------------HHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHH
T ss_pred ------------------------------hHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHH
Q ss_pred HHHHHHHhhCCCeEEEecccc-cCChhHHHHHHHHHHHhccccEEEEee
Q psy3001 358 ICLARALLRKTKILILDEATA-AIDLETDDLIQSTIRSEFAHCTVLTIA 405 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts-~LD~~~~~~i~~~l~~~~~~~tvi~it 405 (602)
...+ .+.+-+++|+||+-. ++|........+.+.....+.-+++.|
T Consensus 169 ~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~S 215 (235)
T 3llm_A 169 KLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMS 215 (235)
T ss_dssp HHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred HHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEe
No 422
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.44 E-value=0.0014 Score=60.18 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=20.8
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|+|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
No 423
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.43 E-value=0.0019 Score=60.50 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=22.2
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHH
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~ 513 (602)
..+.+.+| ..+|+|+|||||||++.+|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34444443 78999999999999999884
No 424
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=96.43 E-value=0.0011 Score=61.68 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=33.3
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhc--------cCCCCceEEECCeec
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRI--------IEPADGTIIIDGVDI 530 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~--------~~~~~G~I~i~g~~i 530 (602)
++++.+.+ +|+++|++|+|||||++.+.+- ..++.+++.++|..+
T Consensus 19 ~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 19 LGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp HTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred hhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 45555555 5899999999999999999872 233557788877544
No 425
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.43 E-value=0.0015 Score=61.32 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=20.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.+.+|+|+|||||||++.+|.-.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999988744
No 426
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=96.41 E-value=0.0017 Score=66.11 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=23.2
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHH-Hhcc
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLAL-FRII 516 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L-~g~~ 516 (602)
..+.+.+| +.+|+||||||||||+.+| .+++
T Consensus 17 ~~i~f~~~-~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEcCCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 34445444 6799999999999999987 3344
No 427
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.40 E-value=0.0014 Score=60.00 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
-.++++|++|+|||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999984
No 428
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.38 E-value=0.037 Score=58.38 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=27.3
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP 238 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~ 238 (602)
++.+.-.+.+| +++.|.|++|+|||||+.-++.....
T Consensus 190 LD~~lgGl~~G-~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 190 LDQLIGTLGPG-SLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHHCCCCTT-CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCC-cEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 33333234455 89999999999999999888776543
No 429
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.38 E-value=0.0012 Score=60.75 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=28.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEE
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~ 244 (602)
.++.|+|++||||||+.+.|++.+.+..+.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 78999999999999999999999887777653
No 430
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.35 E-value=0.019 Score=55.43 Aligned_cols=108 Identities=15% Similarity=0.081 Sum_probs=0.0
Q ss_pred EEEEeccCCChhHHHHHHhccc-------------CCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCce
Q psy3001 215 VGIVGRTGAGKSSLTLALFRII-------------EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPV 281 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~-------------~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~ 281 (602)
++|+|.+|+|||||++.|.|-- .+..+.+.++|. .+
T Consensus 24 I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~~-------------------------------~i 72 (247)
T 3lxw_A 24 LILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDKC-------------------------------HV 72 (247)
T ss_dssp EEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETTE-------------------------------EE
T ss_pred EEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECCc-------------------------------EE
Q ss_pred eEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh-hHHHHHH
Q psy3001 282 FIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG-QRQLICL 360 (602)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G-q~Qrl~l 360 (602)
.+ .+-.|..-..... ++.+-.+
T Consensus 73 ~l---------------------------------------------------------iDTPG~~~~~~~~~~~~~~~i 95 (247)
T 3lxw_A 73 EV---------------------------------------------------------VDTPDIFSSQVSKTDPGCEER 95 (247)
T ss_dssp EE---------------------------------------------------------EECCSCSSTTHHHHSTTSHHH
T ss_pred EE---------------------------------------------------------EECCCCCCCCCCcHHHHHHHH
Q ss_pred HHHHh---hCCCeEEEecccccCChhHHHHHHHHHHHhcc---ccEEEEeeecccc
Q psy3001 361 ARALL---RKTKILILDEATAAIDLETDDLIQSTIRSEFA---HCTVLTIAHRLNT 410 (602)
Q Consensus 361 Aral~---~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~l~~ 410 (602)
.+++. .+++++|+--+.+.++......+......... +.++|+++|..+.
T Consensus 96 ~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl 151 (247)
T 3lxw_A 96 GHCYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDL 151 (247)
T ss_dssp HHHHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGG
T ss_pred HHHHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhc
No 431
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.35 E-value=0.016 Score=59.37 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.4
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|.||+|+|||||++.++...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999999998754
No 432
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.34 E-value=0.0019 Score=59.23 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.6
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
.+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999999999853
No 433
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.30 E-value=0.0021 Score=65.65 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=38.2
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceE-EECCeecCCCChhhhhccceEecCCc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI-IIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I-~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
-+.+|+++.|.|++|||||||+..++.......|.+ +++... ... ....+++++-+|+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~-~~~a~~lG~~~~~l 116 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALD-PEYAKKLGVDTDSL 116 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCC-HHHHHHTTCCGGGC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcC-HHHHHHcCCCHHHe
Confidence 467999999999999999999888876554444554 455432 111 12234456555543
No 434
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.30 E-value=0.013 Score=51.46 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred EEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeee
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYF 294 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (602)
+.|.|++|+|||++++.|........+...++...+.+
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~------------------------------------------ 64 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDN------------------------------------------ 64 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTT------------------------------------------
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCc------------------------------------------
Q ss_pred ccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEe
Q psy3001 295 FIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILD 374 (602)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLD 374 (602)
.....-.+..| +..+|++|
T Consensus 65 ----------------------------------------------------------~~~~~~~~~~a---~~g~l~ld 83 (145)
T 3n70_A 65 ----------------------------------------------------------APQLNDFIALA---QGGTLVLS 83 (145)
T ss_dssp ----------------------------------------------------------SSCHHHHHHHH---TTSCEEEE
T ss_pred ----------------------------------------------------------chhhhcHHHHc---CCcEEEEc
Q ss_pred cccccCChhHHHHHHHHHHHhccccEEEEeeec
Q psy3001 375 EATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR 407 (602)
Q Consensus 375 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 407 (602)
|. ..|++.....+...+.....+..+|.+|.+
T Consensus 84 ei-~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 84 HP-EHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp CG-GGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred Ch-HHCCHHHHHHHHHHHhhcCCCEEEEEECCc
No 435
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.28 E-value=0.0016 Score=63.28 Aligned_cols=43 Identities=28% Similarity=0.341 Sum_probs=31.9
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~ 532 (602)
++....| +.|+|++|+|||||++++++..... -+.+++.++..
T Consensus 41 ~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~ 83 (257)
T 1lv7_A 41 GGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVE 83 (257)
T ss_dssp --CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTT
T ss_pred CCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHH
Confidence 3344444 8999999999999999999987532 47788776654
No 436
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.28 E-value=0.0029 Score=64.58 Aligned_cols=36 Identities=39% Similarity=0.603 Sum_probs=30.1
Q ss_pred ceeEEEECCCCCChHHHHHHHHh-----------ccCCCCceEEECC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFR-----------IIEPADGTIIIDG 527 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g-----------~~~~~~G~I~i~g 527 (602)
|.+++|+|++|+|||||+++|++ -..|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999999 3467778877765
No 437
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.26 E-value=0.0018 Score=59.31 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=20.7
Q ss_pred eEEEEeccCCChhHHHHHHhcccCC
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEP 238 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~ 238 (602)
.++|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 4899999999999999999997544
No 438
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.22 E-value=0.0027 Score=60.96 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=24.0
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADG 521 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G 521 (602)
+|+|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999997665554
No 439
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.18 E-value=0.0023 Score=66.04 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=29.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcc-----------cCCCCceEEECC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI-----------IEPADGTIIIDG 247 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~-----------~~~~~G~I~i~g 247 (602)
..++|||++|+|||||++.|+|. ..|..|.+.+.+
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 56999999999999999999998 567788887765
No 440
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.15 E-value=0.0035 Score=63.82 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=33.9
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
+++++++|| ...+++.....+.+.+........+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 567999999 67888888888888887765556677788776654
No 441
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=96.15 E-value=0.0033 Score=57.94 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=20.3
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g 234 (602)
++++++..+. -.++++|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~--~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKH--GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCc--cEEEEECCCCCCHHHHHHHHhc
Confidence 3455554333 3689999999999999999987
No 442
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.13 E-value=0.0026 Score=61.04 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.3
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhc
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356778999999999999999999863
No 443
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.13 E-value=0.0028 Score=58.92 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=25.4
Q ss_pred eeEEEECCCCCChHHHHHHHHhccCCCCceEEECC
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g 527 (602)
.+|+|+|++||||||+.+.|+.. |-..+|.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 46999999999999999999985 6566664
No 444
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.12 E-value=0.002 Score=65.71 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=31.1
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+..+.+.+|++++|+|++|+|||||++.|++...
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3678899999999999999999999999999864
No 445
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.08 E-value=0.024 Score=54.84 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.2
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|.||+|+||||+++.++...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998754
No 446
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.07 E-value=0.0055 Score=56.14 Aligned_cols=37 Identities=38% Similarity=0.626 Sum_probs=28.7
Q ss_pred eEEEECCCCCChHHHHHHHHhc-----cCCCCc----eEEECCeec
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI-----IEPADG----TIIIDGVDI 530 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~-----~~~~~G----~I~i~g~~i 530 (602)
+|+|+|+.|+|||||++.+.+- +.|+.| ++.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 5899999999999999766553 566666 677777543
No 447
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.06 E-value=0.0028 Score=57.18 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.9
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
No 448
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.03 E-value=0.0025 Score=66.68 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=35.7
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~ 531 (602)
++.+++++|++||||||++..|++.+.+..++|.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999999988888887665543
No 449
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.01 E-value=0.0035 Score=57.03 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.0
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
|..+.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45689999999999999999998764
No 450
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.01 E-value=0.044 Score=57.32 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=27.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEE
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i 245 (602)
.+++++|++|+||||++.-|+..+....-+|.+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 689999999999999999999877655445544
No 451
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.00 E-value=0.0026 Score=61.79 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=29.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 6799999999999999999998775 35677777544
No 452
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.99 E-value=0.0019 Score=64.37 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=35.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~ 251 (602)
++++++|++|+||||++..|++.+.+..|+|.+.+.|..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 889999999999999999999999988899988766553
No 453
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.98 E-value=0.003 Score=56.96 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=21.0
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.++|+|+.||||||+++.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
No 454
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.96 E-value=0.0036 Score=58.19 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=20.9
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.++|+|+.||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999844
No 455
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.95 E-value=0.0013 Score=62.00 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=23.1
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCC
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPA 239 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~ 239 (602)
+++|+|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999887643
No 456
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.95 E-value=0.003 Score=57.15 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=26.6
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCC---ceEEECC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPAD---GTIIIDG 527 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~---G~I~i~g 527 (602)
+++|+|++|||||||+..|++.++... |.|+.+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 589999999999999999998875432 4555543
No 457
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.94 E-value=0.0031 Score=57.96 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
..++|+|++||||||+.+.|+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999999875
No 458
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.90 E-value=0.0039 Score=60.57 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.5
Q ss_pred eEEEECCCCCChHHHHHHHHhccC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
.+.|+|++|||||||.+.|++.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 589999999999999999998653
No 459
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.90 E-value=0.0035 Score=58.30 Aligned_cols=30 Identities=33% Similarity=0.539 Sum_probs=25.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
.+++|+|++||||||+.+.|+.. |...+|.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 57999999999999999999985 5555553
No 460
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.89 E-value=0.0034 Score=58.32 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.4
Q ss_pred eEEEEeccCCChhHHHHHHhcccC
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
+++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998553
No 461
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.87 E-value=0.0014 Score=62.67 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.3
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-+++|+|++||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999543
No 462
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.86 E-value=0.0066 Score=56.33 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.7
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|++|+|||||++.+.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
No 463
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.81 E-value=0.0039 Score=56.66 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.0
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
No 464
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.80 E-value=0.015 Score=59.64 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.7
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|.||+|+||||+++.+....
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999998765
No 465
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.80 E-value=0.0041 Score=56.49 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998664
No 466
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.78 E-value=0.0038 Score=57.48 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=19.9
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+.|+||||||||||++.|...+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999887544
No 467
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.76 E-value=0.0053 Score=57.95 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.2
Q ss_pred ceeEEEECCCCCChHHHHHHHHh
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g 514 (602)
+-+|+|+|++||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
No 468
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.74 E-value=0.0041 Score=60.44 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.4
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+++|+|++|||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 358999999999999999998765
No 469
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.74 E-value=0.0046 Score=56.41 Aligned_cols=38 Identities=26% Similarity=0.501 Sum_probs=29.3
Q ss_pred eeEEEECCCCCChHHHHHHHHhc----cCCCCc----eEEECCeec
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRI----IEPADG----TIIIDGVDI 530 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~----~~~~~G----~I~i~g~~i 530 (602)
-+|+++|++|+|||||++.+.+- +.|+.| ++.+++..+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l 62 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEE
Confidence 36899999999999999999986 355667 556665433
No 470
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.74 E-value=0.0046 Score=55.70 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.6
Q ss_pred ceEEEEeccCCChhHHHHHH
Q psy3001 213 ELVGIVGRTGAGKSSLTLAL 232 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll 232 (602)
.+++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
No 471
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.72 E-value=0.075 Score=52.75 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=21.4
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|.||+|+||||+++.++..+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999988765
No 472
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.72 E-value=0.005 Score=55.43 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=18.1
Q ss_pred eEEEECCCCCChHHHHHHH
Q psy3001 494 QVGIVGRTGAGKSSLTLAL 512 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L 512 (602)
.++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
No 473
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.66 E-value=0.008 Score=59.54 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=29.6
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g 527 (602)
..+..+.|+|++||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3567899999999999999999987653 36677876
No 474
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.66 E-value=0.0015 Score=61.44 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=22.7
Q ss_pred eEEEECCCCCChHHHHHHHHhccCC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEP 518 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~ 518 (602)
.++|+|++||||||+++.|...+++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999988764
No 475
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.65 E-value=0.0022 Score=64.90 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=27.6
Q ss_pred eeeEEeccee--EEEECCCCCChHHHHHHHHhccC
Q psy3001 485 VGLSVSYAMQ--VGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 485 ~~l~i~~Ge~--v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+++.+..|++ +.|+|++||||||+.++|++.+.
T Consensus 15 l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 15 LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4555667777 99999999999999999998653
No 476
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.64 E-value=0.0045 Score=63.51 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=21.1
Q ss_pred EEEECCCCCChHHHHHHHHhccCCCCc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRIIEPADG 521 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~~~~~G 521 (602)
|+|+|++|+|||||++.|+|...+..|
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC----
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 599999999999999999987554444
No 477
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.62 E-value=0.0098 Score=54.42 Aligned_cols=28 Identities=39% Similarity=0.586 Sum_probs=21.5
Q ss_pred eEEEEeccCCChhHHHHHHh-cc----cCCCCc
Q psy3001 214 LVGIVGRTGAGKSSLTLALF-RI----IEPADG 241 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~-g~----~~~~~G 241 (602)
.++|+|++|+|||||++.+. +. +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 48999999999999996554 44 455555
No 478
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.61 E-value=0.0061 Score=55.91 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.2
Q ss_pred ceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
|..+.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998754
No 479
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.60 E-value=0.067 Score=55.87 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEEeccCCChhHHHHHHhccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+.+.||.|+|||+|++++++..
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 8999999999999999999864
No 480
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.53 E-value=0.0057 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.8
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
No 481
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=95.53 E-value=0.0057 Score=57.75 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.7
Q ss_pred ceEEEEeccCCChhHHHHHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g 234 (602)
.+++|+|++||||||+.+.|+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 482
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.53 E-value=0.0061 Score=55.78 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.4
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999999998643
No 483
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.52 E-value=0.0066 Score=55.88 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.5
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+.|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999997654
No 484
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.083 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.6
Q ss_pred EEEEeccCCChhHHHHHHhccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+.+.||.|+|||+|++++++..
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999864
No 485
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.48 E-value=0.029 Score=52.29 Aligned_cols=44 Identities=23% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
++.++++||. ..+++.....+...+.....+..+|+++++...+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~ 145 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVSRI 145 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhc
Confidence 6789999996 5567777777777776654556677777766543
No 486
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.47 E-value=0.0098 Score=61.26 Aligned_cols=31 Identities=32% Similarity=0.667 Sum_probs=24.6
Q ss_pred eeeEEEEecCCceEEEEeccCCChhHHHHHHhc
Q psy3001 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 202 ~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g 234 (602)
++..+.+.+ .+.+|+|+|||||||++-+|.=
T Consensus 17 ~~~~i~f~~--gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEK--GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCS--EEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCC--CeEEEECCCCCCHHHHHHHHHH
Confidence 445555544 6899999999999999999874
No 487
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=95.47 E-value=0.1 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.6
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.-+.|.||.|+|||||++.++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 458999999999999999999865
No 488
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.46 E-value=0.0062 Score=60.78 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.+++|+|++|+|||||++.|.|.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999986
No 489
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.46 E-value=0.0077 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
-.++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999975
No 490
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=95.45 E-value=0.008 Score=55.85 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.7
Q ss_pred cceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|..++|+|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999876
No 491
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.45 E-value=0.0073 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.0
Q ss_pred ceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+..+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999998755
No 492
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.45 E-value=0.0068 Score=55.75 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.3
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
..+..+.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356689999999999999999998754
No 493
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=95.45 E-value=0.0088 Score=61.04 Aligned_cols=35 Identities=40% Similarity=0.529 Sum_probs=28.8
Q ss_pred ceEEEEeccCCChhHHHHHHhc-----------ccCCCCceEEECC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR-----------IIEPADGTIIIDG 247 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g-----------~~~~~~G~I~i~g 247 (602)
-.++|||.+|+|||||++.|.+ ...|..|.+.+++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 3589999999999999999998 3456778777655
No 494
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.42 E-value=0.0074 Score=62.67 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=30.4
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceEEEC
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 526 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~ 526 (602)
.+..+.|+|+|||||||+++.|++...+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 345689999999999999999998877777887763
No 495
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=95.40 E-value=0.006 Score=63.35 Aligned_cols=34 Identities=26% Similarity=0.181 Sum_probs=30.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEEC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~ 246 (602)
..++|+|+|||||||+++.+.+.+.+..+.|.+-
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 5689999999999999999999888888888774
No 496
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.40 E-value=0.009 Score=59.16 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=26.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
.++.|+|++||||||+.+.|+..++ .|.+.+++
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 6799999999999999999987553 35566654
No 497
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.40 E-value=0.0071 Score=54.87 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=0.0
Q ss_pred eEEEEeccCCChhHHHHHHh
Q psy3001 214 LVGIVGRTGAGKSSLTLALF 233 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~ 233 (602)
++.|+|++||||||+.+.|+
T Consensus 4 ~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHH
No 498
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.38 E-value=0.0057 Score=55.78 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.1
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
..+..+.|+|++||||||+++.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456679999999999999999998544
No 499
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.37 E-value=0.0069 Score=59.39 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.4
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|+++|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
No 500
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.36 E-value=0.0073 Score=60.27 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=33.3
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCee
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 529 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~ 529 (602)
++.+.++..+.|.||+|+|||||++++++... .+-+.+++.+
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~ 84 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPE 84 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHH
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHH
Confidence 34556777899999999999999999999864 4566776543
Done!