RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3001
(602 letters)
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 369 bits (949), Expect = e-113
Identities = 221/530 (41%), Positives = 302/530 (56%), Gaps = 116/530 (21%)
Query: 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWIN 61
++ G I+AS+ LH +L N L S MSFF+ TP G +++RFS++++TVDS +P ++ ++
Sbjct: 1029 VSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMG 1088
Query: 62 CLFSVLYLMPVTI--TVFFYGFVISLGTLF-------AAKRLHEKLLKSMLRWSPLF--F 110
LF+V+ + V + T + LG L+ A K L+S+ R SP++ F
Sbjct: 1089 SLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSR-SPVYSHF 1147
Query: 111 DTTPVGRVLSR---------FSSDVNTLDN------------------------------ 131
+ T +G + R SD+ +N
Sbjct: 1148 NETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAA 1207
Query: 132 ------KLTLS---VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182
+ +LS V ++S ++T LNWLVRM+S++ETNIVAVER+KEY ET +EA
Sbjct: 1208 LFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1267
Query: 183 W-VNDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSS 227
W + + P WP +G VEF++Y +RYRE L+LV GIVGRTGAGKSS
Sbjct: 1268 WQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSS 1327
Query: 228 LTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIV 287
LTL LFRI E A+G IIIDG++I +GLH LR ++TIIPQ PV
Sbjct: 1328 LTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ-----------DPV------ 1370
Query: 288 PVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES-VSRSPIYSHF-- 344
+F+ ++ + + PF S V + +L L++ VS P
Sbjct: 1371 -------------LFSGSLR-MNLDPF-SQYSDEEVWWALELAHLKTFVSALPDKLDHEC 1415
Query: 345 ---GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTV 401
GE ++ VGQRQL+CLARALLRKTKIL+LDEATAA+DLETD+LIQSTIR++F CTV
Sbjct: 1416 AEGGENLS--VGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTV 1473
Query: 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
LTIAHRLNTI+D RV+VLDKG V EF +PS L++ + IFYSMAKDAGL
Sbjct: 1474 LTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRG-IFYSMAKDAGL 1522
Score = 180 bits (458), Expect = 7e-48
Identities = 78/118 (66%), Positives = 95/118 (80%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ +++ +VGIVGRTGAGKSSLTL LFRI E A+G IIIDG++I +GLH LR ++TI
Sbjct: 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITI 1364
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
IPQDPVLFSG+LR+NLDP + SDE +W ALELAHL TFVS LP +L HE +EGGENL
Sbjct: 1365 IPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422
Score = 65.4 bits (159), Expect = 6e-11
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 453 WLAVRLETVGNLITFSAALLAVLSKETLNAGLVGLSVSYAMQV 495
WLAVRLE VGN I AAL AV+S+ +L+AGLVGLSVSY++QV
Sbjct: 1190 WLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQV 1232
Score = 61.9 bits (150), Expect = 7e-10
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 74 ITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKL 133
VF Y +S+G + A++ LH+ LL + LR FF+ TP G +++RFS +++T+D+ +
Sbjct: 1020 FAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMI 1079
Query: 134 TLSVQQTLSQPFKITQTL 151
++ + F + L
Sbjct: 1080 PPVIKMFMGSLFNVIGAL 1097
Score = 34.9 bits (80), Expect = 0.17
Identities = 38/144 (26%), Positives = 63/144 (43%), Gaps = 19/144 (13%)
Query: 462 GNLITFSAALLAVLSKE--TLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPA 519
GN IT A TLN + S+ V +VG+ G GKSSL AL ++
Sbjct: 634 GNSITVHNATFTWARDLPPTLNG--ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKV 691
Query: 520 DGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKA-LELA 578
+G + ++ + +PQ + + +LR N+ G++ +E ++ LE
Sbjct: 692 EGHV-------------HMKGSVAYVPQQAWIQNDSLRENI-LFGKALNEKYYQQVLEAC 737
Query: 579 HLNTFVSNLPARLQHEVSEGGENL 602
L + LP+ + E+ E G NL
Sbjct: 738 ALLPDLEILPSGDRTEIGEKGVNL 761
Score = 33.8 bits (77), Expect = 0.30
Identities = 21/91 (23%), Positives = 42/91 (46%), Gaps = 4/91 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI---RSEFAHCTVLTIAHRLN 409
GQ+Q + LARA+ I + D+ +A+D I + + T + + H ++
Sbjct: 764 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGIS 823
Query: 410 TIIDSDRVLVLDKGLVVEFDS-PSVLMKNKA 439
+ D ++V+ G + E S +L ++ A
Sbjct: 824 YLPQVDVIIVMSGGKISEMGSYQELLQRDGA 854
Score = 31.1 bits (70), Expect = 2.6
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
LV +VG+ G GKSSL AL ++ +G + + G
Sbjct: 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG 699
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 263 bits (674), Expect = 1e-84
Identities = 123/259 (47%), Positives = 153/259 (59%), Gaps = 62/259 (23%)
Query: 197 GEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLTLALFRIIEPADGT 242
G++EFK+ +RYR L V GIVGRTG+GKSSL LALFR++E + G+
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 243 IIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIF 302
I+IDGVDI +GLH LRSR++IIP Q ++F
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIP------------------------------QDPVLF 90
Query: 303 TEDVKPLIITPFCSNLQRFYVATSRQLKR-LESVS-RSPIYSHFG---ETVTGN-----V 352
+ ++ SNL F + +L + LE V + + S G V V
Sbjct: 91 SGTIR--------SNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSV 142
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQL+CLARALLRK+KIL+LDEATA++D ETD LIQ TIR F CTVLTIAHRL+TII
Sbjct: 143 GQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTII 202
Query: 413 DSDRVLVLDKGLVVEFDSP 431
DSDR+LVLDKG VVEFDSP
Sbjct: 203 DSDRILVLDKGRVVEFDSP 221
Score = 190 bits (486), Expect = 7e-57
Identities = 73/108 (67%), Positives = 86/108 (79%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
VGIVGRTG+GKSSL LALFR++E + G+I+IDGVDI +GLH LRSR++IIPQDPVLFSG
Sbjct: 33 VGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSG 92
Query: 555 TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+R NLDP GE SDE +W+ALE L FV +LP L V EGGENL
Sbjct: 93 TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENL 140
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 256 bits (656), Expect = 1e-73
Identities = 144/334 (43%), Positives = 183/334 (54%), Gaps = 57/334 (17%)
Query: 141 LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWV-NDKKPKDEWPEKGEV 199
LS IT L ++R+ S E ++ AVER+ Y + P EA V + +P WP G +
Sbjct: 1179 LSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSI 1238
Query: 200 EFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
+F+D +RYR L E VGIVGRTGAGKSS+ ALFRI+E G I+I
Sbjct: 1239 KFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILI 1298
Query: 246 DGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTED 305
DG DI GL LR L IIPQ PV +F+
Sbjct: 1299 DGCDISKFGLMDLRKVLGIIPQ-----------APV-------------------LFSGT 1328
Query: 306 VKPLIITPFCS-NLQRFYVATSR-QLKRLESVSRSPI-----YSHFGETVTGNVGQRQLI 358
V+ + PF N + + R LK + + R+ + S GE + VGQRQL+
Sbjct: 1329 VR-FNLDPFNEHNDADLWESLERAHLK--DVIRRNSLGLDAEVSEAGENFS--VGQRQLL 1383
Query: 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVL 418
LARALLR++KIL+LDEATAA+D+ TD LIQ TIR EF CT+L IAHRLNTIID DR+L
Sbjct: 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL 1443
Query: 419 VLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLA 452
VLD G VVEFD+P L+ N+ S F M + G A
Sbjct: 1444 VLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAA 1477
Score = 152 bits (385), Expect = 2e-38
Identities = 64/117 (54%), Positives = 77/117 (65%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ +S + +VGIVGRTGAGKSS+ ALFRI+E G I+IDG DI GL LR L I
Sbjct: 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGI 1317
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601
IPQ PVLFSGT+R NLDP E +D +W++LE AHL + L EVSE GEN
Sbjct: 1318 IPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEN 1374
Score = 61.7 bits (150), Expect = 8e-10
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 61 NCLFSVLYLMPVTITVF-FYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVL 119
N ++++L V +T+ Y ++S +L+AAKRLH+ +L S+LR FF T P+GR++
Sbjct: 956 NLIYALLSFGQVLVTLLNSYWLIMS--SLYAAKRLHDAMLGSILRAPMSFFHTNPLGRII 1013
Query: 120 SRFSSDVNTLDNKLTLSVQQTLSQPFKITQT 150
+RF+ D+ +D + + V L Q F++ T
Sbjct: 1014 NRFAKDLGDIDRNVAVFVNMFLGQIFQLLST 1044
Score = 61.7 bits (150), Expect = 8e-10
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWIN 61
L S+ A+K LH +L +IL + MSFF T P+GR+I+RF++D+ +D N+ F+ ++
Sbjct: 977 LIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLG 1036
Query: 62 CLFSVLYLMPVTITVFFYGFV--ISL 85
+F +L T G V ISL
Sbjct: 1037 QIFQLLS------TFVLIGIVSTISL 1056
Score = 49.0 bits (117), Expect = 7e-06
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 22/89 (24%)
Query: 262 LTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF 321
L I Q+L+T +I + + ++ I+P+ VL++ + +
Sbjct: 1035 LGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYL----------------------Y 1072
Query: 322 YVATSRQLKRLESVSRSPIYSHFGETVTG 350
Y +T+R++KRL+S++RSP+Y+ FGE + G
Sbjct: 1073 YQSTAREVKRLDSITRSPVYAQFGEALNG 1101
Score = 42.8 bits (101), Expect = 6e-04
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEP-ADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS 553
V IVG TG GK+SL A+ + P +D +++I R + +PQ +F+
Sbjct: 646 VAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWIFN 692
Query: 554 GTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+R N+ E +A+++ L + LP E+ E G N+
Sbjct: 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNI 741
Score = 40.9 bits (96), Expect = 0.002
Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 58/246 (23%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEP-ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
LV IVG TG GK+SL A+ + P +D +++I R + +PQV
Sbjct: 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQV---- 687
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII--TPFCSNLQRFY-----VAT 325
S IF V+ I+ +PF + +R+ A
Sbjct: 688 --------------------------SWIFNATVRDNILFGSPF--DPERYERAIDVTAL 719
Query: 326 SRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLET- 384
L L + I G ++G GQ+Q + +ARA+ + + I D+ +A+D
Sbjct: 720 QHDLDLLPGGDLTEI-GERGVNISG--GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVG 776
Query: 385 DDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYS 444
+ I+ E T + + ++L+ + DR++++ +G++ E + L N +F
Sbjct: 777 RQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQK 835
Query: 445 MAKDAG 450
+ ++AG
Sbjct: 836 LMENAG 841
Score = 37.0 bits (86), Expect = 0.036
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 453 WLAVRLETVGNLITFSAALLAVLSKETLN-----AGLVGLSVSYAMQV 495
WLA+RLET+G L+ + A AV+ A +GL +SYA+ +
Sbjct: 1138 WLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNI 1185
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 246 bits (629), Expect = 4e-70
Identities = 180/540 (33%), Positives = 259/540 (47%), Gaps = 128/540 (23%)
Query: 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWIN 61
L + S+ A+K LH +L +IL + M FF T P GR+I+RFS+D+ +D N+ + ++N
Sbjct: 974 LISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMN 1033
Query: 62 C---LFSVLYLMPVTITVFFYGFVISLGTLFAAKRLHE------KLLKSMLRWSPLFFDT 112
L S L+ T+ + + L +AA ++ + L S+ R SP++
Sbjct: 1034 QLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTR-SPIY--- 1089
Query: 113 TPVGRVLSRFSS-------------DVNTLDNKLTLSVQQT------------------- 140
G L+ SS + ++DN + ++ T
Sbjct: 1090 AQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIW 1149
Query: 141 --------------------------LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEY 174
LS IT L+ ++R S E ++ +VER+ Y
Sbjct: 1150 LTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNY 1209
Query: 175 GETPQEA-EWVNDKKPKDEWPEKGEVEFKDYKVRYREGL--------------ELVGIVG 219
+ P EA + + +P WP +G ++F+D +RYR GL E VG+VG
Sbjct: 1210 IDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVG 1269
Query: 220 RTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279
RTGAGKSS+ ALFRI+E G I+ID D+ GL LR L+IIPQ +
Sbjct: 1270 RTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQ-----------S 1318
Query: 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS-NLQRFYVATSR-QLKRLESVSR 337
PV +F+ V+ I PF N + A R +K + + R
Sbjct: 1319 PV-------------------LFSGTVR-FNIDPFSEHNDADLWEALERAHIK--DVIDR 1356
Query: 338 SPI-----YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
+P S GE + VGQRQL+ LARALLR++KIL+LDEATA++D+ TD LIQ TI
Sbjct: 1357 NPFGLDAEVSEGGENFS--VGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTI 1414
Query: 393 RSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLA 452
R EF CT+L IAHRLNTIID D++LVL G V+E+DSP L+ S F+ M G A
Sbjct: 1415 REEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPA 1474
Score = 134 bits (339), Expect = 9e-33
Identities = 67/121 (55%), Positives = 82/121 (67%), Gaps = 2/121 (1%)
Query: 484 LVGLS--VSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 541
L GLS VS + +VG+VGRTGAGKSS+ ALFRI+E G I+ID D+ GL LR
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311
Query: 542 LTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601
L+IIPQ PVLFSGT+R N+DP E +D +W+ALE AH+ + P L EVSEGGEN
Sbjct: 1312 LSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371
Query: 602 L 602
Sbjct: 1372 F 1372
Score = 61.9 bits (150), Expect = 7e-10
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 7 IRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSV 66
+R +K + + + IL C + TT V R+ S + T S ++ + ++++
Sbjct: 902 MRYNKAVGGLWVVMILLVC---YLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYAL 958
Query: 67 LYLMPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDV 126
L V +T F F + +L AAKRLH+ +L S+LR LFF T P GRV++RFS D+
Sbjct: 959 LGFGQVAVT-FTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDI 1017
Query: 127 NTLDNKLTLSVQQTLSQPFKITQTL 151
+D + + ++Q +++ T
Sbjct: 1018 GDIDRNVANLMNMFMNQLWQLLSTF 1042
Score = 47.7 bits (113), Expect = 2e-05
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 475 LSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG 534
SK TL+ + L + V IVG TG GK+SL A+ + A+ + ++
Sbjct: 628 TSKPTLSD--INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV--------- 676
Query: 535 LHTLRSRLTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHE 594
+R + +PQ +F+ T+R N+ + E W+A+++ L + LP R E
Sbjct: 677 ---IRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTE 733
Query: 595 VSEGGENL 602
+ E G N+
Sbjct: 734 IGERGVNI 741
Score = 43.4 bits (102), Expect = 4e-04
Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 46/240 (19%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273
LV IVG TG GK+SL A+ + A+ + ++ +R + +PQV
Sbjct: 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVV------------IRGSVAYVPQV----- 687
Query: 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ--LKR 331
+IF ++ +++F D + R T+ Q L
Sbjct: 688 -------SWIFNAT--------VRENILFGSDFES-------ERYWRAIDVTALQHDLDL 725
Query: 332 LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE-TDDLIQS 390
L + I G ++G GQ+Q + +ARA+ + I I D+ +A+D + S
Sbjct: 726 LPGRDLTEI-GERGVNISG--GQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS 782
Query: 391 TIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAG 450
++ E T + + ++L+ + DR++++ +G++ E + + L K+ S+F + ++AG
Sbjct: 783 CMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKLMENAG 841
Score = 32.6 bits (74), Expect = 0.68
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 440 SIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLSKETLN-----AGLVGLSVSYAMQ 494
+I +++A + WL +RLET+G ++ + A AVL A +GL +SY +
Sbjct: 1122 NIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLN 1181
Query: 495 V 495
+
Sbjct: 1182 I 1182
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 216 bits (553), Expect = 5e-67
Identities = 107/253 (42%), Positives = 139/253 (54%), Gaps = 60/253 (23%)
Query: 193 WPEKGEVEFKDYKVRYR--------------EGLELVGIVGRTGAGKSSLTLALFRIIEP 238
WPE GE+E ++ VRY + E +GIVGRTGAGKS+L LALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 239 ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQV 298
+G I IDG+DI T+ L LRS LTIIPQ P
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQ-----------DPT----------------- 92
Query: 299 SLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358
+F+ ++ SNL F + ++ VS G ++ GQRQL+
Sbjct: 93 --LFSGTIR--------SNLDPFDEYSDEEIYGALRVSEG------GLNLSQ--GQRQLL 134
Query: 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVL 418
CLARALL++ ++L+LDEATA+ID TD LIQ TIR EF + T+LTIAHRL TIID D++L
Sbjct: 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKIL 194
Query: 419 VLDKGLVVEFDSP 431
V+D G V E+D P
Sbjct: 195 VMDAGEVKEYDHP 207
Score = 140 bits (355), Expect = 2e-38
Identities = 64/118 (54%), Positives = 73/118 (61%), Gaps = 18/118 (15%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V V ++GIVGRTGAGKS+L LALFR +E +G I IDG+DI T+ L LRS LTI
Sbjct: 27 VSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTI 86
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
IPQDP LFSGT+R NLDP E SDE I+ AL VSEGG NL
Sbjct: 87 IPQDPTLFSGTIRSNLDPFDEYSDEEIYGAL------------------RVSEGGLNL 126
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 167 bits (423), Expect = 1e-47
Identities = 104/270 (38%), Positives = 151/270 (55%), Gaps = 52/270 (19%)
Query: 197 GEVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGT 242
GE++ D VRY L + VGI GRTG+GKSSL+LA FR+++ DG
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 243 IIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIF 302
I+IDG+DI L LHTLRSRL+II Q P+ F +
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQ-----------DPIL-----------FSGSIRFNL 115
Query: 303 TEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-----IYSHFGETVTGNVGQRQL 357
+ K C++ + + QLK + V P + + GE + VGQRQL
Sbjct: 116 DPECK-------CTDDRLWEALEIAQLKNM--VKSLPGGLDAVVTEGGENFS--VGQRQL 164
Query: 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRV 417
CLARA +RK+ ILI+DEATA+ID+ T++++Q + + FA TV+TIAHR++TI+D+D V
Sbjct: 165 FCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLV 224
Query: 418 LVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
LVL +G++VE D+P L+ + +F S+ +
Sbjct: 225 LVLSRGILVECDTPENLLAQEDGVFASLVR 254
Score = 143 bits (361), Expect = 9e-39
Identities = 72/151 (47%), Positives = 94/151 (62%), Gaps = 26/151 (17%)
Query: 478 ETLNAGLVGL---------SVSY-----------------AMQVGIVGRTGAGKSSLTLA 511
+ N+GLVGL V Y +VGI GRTG+GKSSL+LA
Sbjct: 7 GSSNSGLVGLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLA 66
Query: 512 LFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPVGESSDEAI 571
FR+++ DG I+IDG+DI L LHTLRSRL+II QDP+LFSG++R NLDP + +D+ +
Sbjct: 67 FFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRL 126
Query: 572 WKALELAHLNTFVSNLPARLQHEVSEGGENL 602
W+ALE+A L V +LP L V+EGGEN
Sbjct: 127 WEALEIAQLKNMVKSLPGGLDAVVTEGGENF 157
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 174 bits (442), Expect = 8e-46
Identities = 129/389 (33%), Positives = 185/389 (47%), Gaps = 99/389 (25%)
Query: 115 VGRVLSRFSSDVNTLDNKLTLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEY 174
+G +L S ++ + LT+++Q T TLNWLVR + VE ++ +VER+ Y
Sbjct: 1205 IGTMLRATSQEIGLVSLSLTMAMQ--------TTATLNWLVRQVATVEADMNSVERLLYY 1256
Query: 175 -GETPQEA-----EWVNDKK-------------------PKDEWP---EKGEVEFKDYKV 206
E P E E V+ + P P + G + F+ ++
Sbjct: 1257 TDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQM 1316
Query: 207 RYREGLELV--------------GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
RYREGL LV GIVGRTG+GKS+L L R++E G I ++G +I
Sbjct: 1317 RYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGA 1376
Query: 253 LGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT 312
GL LR + F ++P Q ++F V+
Sbjct: 1377 YGLRELRRQ----------------------FSMIP--------QDPVLFDGTVR----- 1401
Query: 313 PFCSNLQRFYVATSRQLKR-LESV-------SRSP-IYSHFGETVTG-NVGQRQLICLAR 362
N+ F A+S ++ LE V S S I S E + +VGQRQL+C+AR
Sbjct: 1402 ---QNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458
Query: 363 ALLRKTKILIL-DEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421
ALL+K IL DEATA ID D IQ+T+ S F+ TV+TIAHRL+T+ D+++V+D
Sbjct: 1459 ALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMD 1518
Query: 422 KGLVVEFDSPSVLMKNKASIFYSMAKDAG 450
G V E SP L+ N+ SIF+SM + G
Sbjct: 1519 HGAVAEMGSPRELVMNRQSIFHSMVEALG 1547
Score = 113 bits (284), Expect = 5e-26
Identities = 51/108 (47%), Positives = 69/108 (63%)
Query: 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS 553
+VGIVGRTG+GKS+L L R++E G I ++G +I GL LR + ++IPQDPVLF
Sbjct: 1338 KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397
Query: 554 GTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601
GT+R N+DP E+S +W ALEL L V++ + V EGG N
Sbjct: 1398 GTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSN 1445
Score = 69.0 bits (169), Expect = 5e-12
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 8 RASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVL 67
R S+ +H +LR++ MSFFDTTP+GR+++RFS+D++ +D+ LP + CLFS+
Sbjct: 1028 RGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSIC 1087
Query: 68 YLMPVTI 74
+ VT
Sbjct: 1088 SSILVTS 1094
Score = 59.4 bits (144), Expect = 4e-09
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 92 KRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLSVQQTLSQPFKITQTL 151
+ +H LL+S+ R + FFDTTP+GR+L+RFS D++ LDN L +S L F I ++
Sbjct: 1031 RNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI 1090
Score = 51.7 bits (124), Expect = 9e-07
Identities = 44/231 (19%), Positives = 82/231 (35%), Gaps = 92/231 (39%)
Query: 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR 327
+ ++I V S P + +VP LY+ + FY + +R
Sbjct: 1086 ICSSILVTSASQPFVLVALVPCGYLYYRLMQ----------------------FYNSANR 1123
Query: 328 QLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
+++R++SV++SP+++ E + G + +A L ++ EA L D+
Sbjct: 1124 EIRRIKSVAKSPVFTLLEEALQ---GSATITAYGKAHL------VMQEA-----LRRLDV 1169
Query: 388 IQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
+ S ++N A+
Sbjct: 1170 VYS-----------------------------------------CSYLENVAN------- 1181
Query: 448 DAGLAWLAVRLETVGNLITFSAALLAVLSK----ETLNAGLVGLSVSYAMQ 494
WL VR+E + N++ AL+ V+ + GLV LS++ AMQ
Sbjct: 1182 ----RWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQ 1228
Score = 34.0 bits (78), Expect = 0.29
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 13/106 (12%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
++G TG+GKS+L +L E ++G + + RS + +PQ + + T+
Sbjct: 691 VLGATGSGKSTLLQSLLSQFEISEGRVWAE------------RS-IAYVPQQAWIMNATV 737
Query: 557 RLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
R N+ E + A+ ++ L ++ L L+ E+ E G NL
Sbjct: 738 RGNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNL 783
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 150 bits (382), Expect = 6e-42
Identities = 80/258 (31%), Positives = 125/258 (48%), Gaps = 46/258 (17%)
Query: 197 GEVEFKDYKVRYREGL-------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243
GE+EF++ Y E E V IVG TGAGK++L L R +P G I
Sbjct: 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303
+IDG+DIR + +LRS + ++ Q F+F +++ T
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQ------------DTFLF---SGTIMENIRLGRPNAT 105
Query: 304 EDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP--IYSHFGETVTG-NVGQRQLICL 360
++ + +++ + + + P + GE + G+RQL+ +
Sbjct: 106 DEE---------------VIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAI 150
Query: 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL 420
ARA+LR KILILDEAT+ ID ET+ LIQ + T + IAHRL+TI ++D++LVL
Sbjct: 151 ARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVL 210
Query: 421 DKGLVVEFDSPSVLMKNK 438
D G ++E + L+ K
Sbjct: 211 DDGKIIEEGTHDELLAKK 228
Score = 109 bits (275), Expect = 3e-27
Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ S+ V IVG TGAGK++L L R +P G I+IDG+DIR + +LRS + +
Sbjct: 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81
Query: 545 IPQDPVLFSGTLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601
+ QD LFSGT+ N+ P ++DE + +A + A + F+ LP + E G N
Sbjct: 82 VLQDTFLFSGTIMENIRLGRP--NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGN 139
Query: 602 L 602
L
Sbjct: 140 L 140
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 155 bits (393), Expect = 1e-40
Identities = 89/320 (27%), Positives = 139/320 (43%), Gaps = 57/320 (17%)
Query: 147 ITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKV 206
+ + L + S ++ A ER+ E + E E D G +EF++
Sbjct: 281 LLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLK----DTIGSIEFENVSF 336
Query: 207 RYREGL-------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
Y E V IVG +G+GKS+L L R+ +P G I+IDG+DIR +
Sbjct: 337 SYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI 396
Query: 254 GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP 313
L +LR R+ I+ Q +F ++ I
Sbjct: 397 SLDSLRKRIGIVSQ------------DPLLF---SGTIRE----------------NIAL 425
Query: 314 FCSNLQRFYV-ATSRQLKRLESVSRSPIYSHF-----GETVTGNVGQRQLICLARALLRK 367
+ + + E ++ P G ++G GQRQ + +ARALLR
Sbjct: 426 GRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG--GQRQRLAIARALLRN 483
Query: 368 TKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
ILILDEAT+A+D ET+ LIQ ++ T L IAHRL+TI ++DR++VLD G +VE
Sbjct: 484 PPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543
Query: 428 FDSPSVLMKNKASIFYSMAK 447
+ L+ ++ + +
Sbjct: 544 RGTHEELLAKG-GLYARLYQ 562
Score = 104 bits (262), Expect = 1e-23
Identities = 51/109 (46%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVG +G+GKS+L L R+ +P G I+IDG+DIR + L +LR R+ I+ QDP+LFSG
Sbjct: 358 VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG 417
Query: 555 TLRLNLDP-VGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+R N+ +++DE I +AL+LA+ + F++NLP V E G NL
Sbjct: 418 TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466
Score = 44.3 bits (105), Expect = 1e-04
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 17/137 (12%)
Query: 6 SIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFS 65
+ L + +L +SFFD G +ISR + DVE V + + T L S
Sbjct: 80 GQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFT---S 136
Query: 66 VLYLMPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSD 125
+L L+ + +F + ++L L L + + R + S
Sbjct: 137 ILLLIGSLVLLFSLSWRLALILLLIL--------------PLLALVLSLLARKSRKLSRR 182
Query: 126 VNTLDNKLTLSVQQTLS 142
V +L + ++LS
Sbjct: 183 VREALGELNARLLESLS 199
Score = 41.3 bits (97), Expect = 0.002
Identities = 18/92 (19%), Positives = 35/92 (38%)
Query: 47 TVDSNLPTFLRSWINCLFSVLYLMPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWS 106
+D+ L L +L + + ++ S L L + +LR
Sbjct: 40 IIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLP 99
Query: 107 PLFFDTTPVGRVLSRFSSDVNTLDNKLTLSVQ 138
FFD G ++SR ++DV + N ++ +
Sbjct: 100 LSFFDKAKSGDLISRLTNDVEAVSNLVSTVLV 131
Score = 29.7 bits (67), Expect = 4.8
Identities = 19/97 (19%), Positives = 45/97 (46%), Gaps = 11/97 (11%)
Query: 258 LRSRLT----IIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP 313
L SRLT + +++T+ V+ +++ + + + V + +++LI L+I P
Sbjct: 111 LISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSL-VLLFSLSWRLALIL------LLILP 163
Query: 314 FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350
+ + SR+L R + + + E+++G
Sbjct: 164 LLALVLSLLARKSRKLSRRVREALGELNARLLESLSG 200
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 132 bits (334), Expect = 4e-32
Identities = 138/527 (26%), Positives = 224/527 (42%), Gaps = 126/527 (23%)
Query: 7 IRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWIN----- 61
+ SK LH +L ++L + M+ +T GR+++RF++D+ +D LP L +I
Sbjct: 954 LTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIV 1013
Query: 62 ----CLFSVL--YLMPVTITV----------------------------FFYGFVISLG- 86
+ SVL Y+ I V F + SL
Sbjct: 1014 LGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKG 1073
Query: 87 --------------TLF-AAKRLHEK---LLKSMLRWSPLFFDTTPVGRVLSRFSSDVNT 128
TLF A LH L S LRW + D V ++ + T
Sbjct: 1074 LWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT 1133
Query: 129 LDNKLTLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE------ 182
+ V L+ I TL W V + DV+ + +V R+ ++ + PQE
Sbjct: 1134 NQDGEG-EVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGG 1192
Query: 183 ---------WVNDKKPKDEWPEKGEVEFKDYKVRYRE--------------GLELVGIVG 219
+ + + WP G+++ + +Y E G + VG++G
Sbjct: 1193 GKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLG 1252
Query: 220 RTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279
RTG+GKS+L AL R++ +G I IDGV ++ L T R +IPQ
Sbjct: 1253 RTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQ------------ 1299
Query: 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP 339
VFIF S F +++ P S+ + + VA LK + + + P
Sbjct: 1300 KVFIF--------------SGTFRKNLDPY---EQWSDEEIWKVAEEVGLKSV--IEQFP 1340
Query: 340 IYSHF----GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE 395
F G V N G +QL+CLAR++L K KIL+LDE +A +D T +I+ T++
Sbjct: 1341 DKLDFVLVDGGYVLSN-GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS 1399
Query: 396 FAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
F++CTV+ HR+ +++ + LV++ V ++DS L+ N+ S+F
Sbjct: 1400 FSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL-NETSLF 1445
Score = 92.7 bits (230), Expect = 2e-19
Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ SV +VG++GRTG+GKS+L AL R++ +G I IDGV ++ L T R +
Sbjct: 1238 LSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGV 1296
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
IPQ +FSGT R NLDP + SDE IWK E L + + P +L + +GG
Sbjct: 1297 IPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351
Score = 46.4 bits (110), Expect = 5e-05
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 77 FFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLS 136
FF G + L +KRLHE++L S+L+ +T GR+L+RF+ D+ +D+ L L+
Sbjct: 943 FFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLT 1002
Query: 137 V 137
+
Sbjct: 1003 L 1003
Score = 41.4 bits (97), Expect = 0.002
Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 54/223 (24%)
Query: 208 YREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E +L+ + G TG+GKSSL + + +EP++G I H+ R
Sbjct: 448 KLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI-----------KHSGR-------- 488
Query: 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFY-VATS 326
I +S Q S I +K II + R+ V +
Sbjct: 489 -------ISFSP-----------------QTSWIMPGTIKDNIIFGLSYDEYRYTSVIKA 524
Query: 327 RQLKRLESVSRSP-----IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID 381
QL+ E ++ P + G T++G GQR I LARA+ + + +LD +D
Sbjct: 525 CQLE--EDIALFPEKDKTVLGEGGITLSG--GQRARISLARAVYKDADLYLLDSPFTHLD 580
Query: 382 LETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
+ T+ ++ +S + ++ T + + +L + +D++L+L +G
Sbjct: 581 VVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEG 623
Score = 37.6 bits (87), Expect = 0.024
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 15/109 (13%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ + G TG+GKSSL + + +EP++G I G R++ PQ + G
Sbjct: 455 LAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPG 501
Query: 555 TLRLNLDPVGESSDEAIWKALELA-HLNTFVSNLPARLQHEVSEGGENL 602
T++ N+ G S DE + ++ A L ++ P + + + EGG L
Sbjct: 502 TIKDNI-IFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITL 549
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 114 bits (288), Expect = 6e-29
Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 38/236 (16%)
Query: 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH 256
G V + +R + G E+VGIVGR+G+GKS+LT + R P +G +++DG D+
Sbjct: 14 GPVILDNISLRIKPG-EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPA 72
Query: 257 TLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS 316
LR ++ ++ +Q +++F ++ I
Sbjct: 73 WLRRQVGVV------------------------------LQENVLFNRSIRDNIALADPG 102
Query: 317 NLQRFYVATSRQLKRLESVSRSP-----IYSHFGETVTGNVGQRQLICLARALLRKTKIL 371
+ ++ + +S P I G ++G GQRQ I +ARAL+ +IL
Sbjct: 103 MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSG--GQRQRIAIARALIHNPRIL 160
Query: 372 ILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
I DEAT+A+D E++ I + A TV+ IAHRL+T+ ++DR++V++KG +VE
Sbjct: 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVE 216
Score = 72.9 bits (179), Expect = 2e-14
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L + VGIVGR+G+GKS+LT + R P +G +++DG D+ LR ++ +
Sbjct: 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80
Query: 545 IPQDPVLFSGTLRLNLDPVGESSD-EAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ Q+ VLF+ ++R N+ E + +A +LA + F+S LP V E G L
Sbjct: 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGL 139
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 110 bits (279), Expect = 3e-28
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Query: 344 FGETVTGNV---GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCT 400
F T+ N+ GQRQ I +ARALLR ILILDEAT+A+D ET+ LI +R+ T
Sbjct: 88 FSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKT 147
Query: 401 VLTIAHRLNTIIDSDRVLVLDKG 423
V+ IAHRL+TI D+DR++VLD G
Sbjct: 148 VIVIAHRLSTIRDADRIIVLDDG 170
Score = 90.9 bits (227), Expect = 2e-21
Identities = 35/66 (53%), Positives = 47/66 (71%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVG +G+GKS+L L R+ +P G I+IDGVD+R L L +LR + +PQDP LFSG
Sbjct: 31 VAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSG 90
Query: 555 TLRLNL 560
T+R N+
Sbjct: 91 TIRENI 96
Score = 72.0 bits (178), Expect = 8e-15
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E V IVG +G+GKS+L L R+ +P G I+IDGVD+R L L +LR + +PQ
Sbjct: 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQ 83
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 118 bits (298), Expect = 4e-28
Identities = 85/262 (32%), Positives = 131/262 (50%), Gaps = 50/262 (19%)
Query: 194 PEKGEVEFKDYKVRY----------------REGLELVGIVGRTGAGKSSLTLALFRIIE 237
P +GE+EF+ Y R G E V +VG +GAGKS+L L R +
Sbjct: 333 PLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPG-ETVALVGPSGAGKSTLFQLLLRFYD 391
Query: 238 PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQ 297
P G I++DGVD+R L LR+R+ ++PQ PV V ++ Y
Sbjct: 392 PQSGRILLDGVDLRQLDPAELRARMALVPQ-----------DPVLFAASVMENIRYGRPD 440
Query: 298 VSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP--IYSHFGET-VTGNVGQ 354
+ E+V+ A +R E +S P ++ GE VT + GQ
Sbjct: 441 AT---DEEVE----------------AAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ 481
Query: 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDS 414
RQ I +ARA+L+ IL+LDEAT+A+D E++ L+Q + + T L IAHRL T++ +
Sbjct: 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKA 541
Query: 415 DRVLVLDKGLVVEFDSPSVLMK 436
DR++V+D+G +V + + L+
Sbjct: 542 DRIVVMDQGRIVAQGTHAELIA 563
Score = 82.4 bits (204), Expect = 2e-16
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG +GAGKS+L L R +P G I++DGVD+R L LR+R+ ++PQDPVLF+
Sbjct: 369 VALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA 428
Query: 555 TLRLNLD-PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++ N+ +++DE + A AH + F+S LP + E G L
Sbjct: 429 SVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL 477
Score = 34.7 bits (80), Expect = 0.14
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 4/73 (5%)
Query: 60 INCLFSVLYLMPVTI---TVFFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVG 116
+N F+ L ++ + + T + V LG A + + ++ SP FFD G
Sbjct: 57 LNRYFAFLLVVALVLALGTAARFYLVTWLGERVVAD-IRRAVFAHLISLSPSFFDKNRSG 115
Query: 117 RVLSRFSSDVNTL 129
V+SR ++D L
Sbjct: 116 EVVSRLTTDTTLL 128
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 116 bits (292), Expect = 2e-27
Identities = 82/294 (27%), Positives = 140/294 (47%), Gaps = 56/294 (19%)
Query: 154 LVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRY----R 209
L + + ++ + A E + ++P E + + + +G+VEF++ RY R
Sbjct: 290 LTNVNAPMQRGLAAAESLFTLLDSPPEKD--TGTRAIER--ARGDVEFRNVTFRYPGRDR 345
Query: 210 EGL----------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 259
L E V +VGR+G+GKS+L + R EP G I++DG D+ L +LR
Sbjct: 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405
Query: 260 SRLTIIPQVLATIFVICYSTPVFIFV-IVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL 318
++ ++ S V +F + ++ Y + +++ + +
Sbjct: 406 RQVALV------------SQDVVLFNDTIANNIAYG--RTEQADRAEIERALAA---AYA 448
Query: 319 QRFYVATSRQLKRLESVSRSPIYSHF-----GETVTGNVGQRQLICLARALLRKTKILIL 373
Q F V + P+ G ++G GQRQ + +ARALL+ ILIL
Sbjct: 449 QDF-------------VDKLPLGLDTPIGENGVLLSG--GQRQRLAIARALLKDAPILIL 493
Query: 374 DEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
DEAT+A+D E++ L+Q+ + T L IAHRL+TI +DR++V+D G +VE
Sbjct: 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVE 547
Score = 80.9 bits (200), Expect = 5e-16
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VGR+G+GKS+L + R EP G I++DG D+ L +LR ++ ++ QD VLF+
Sbjct: 361 VALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND 420
Query: 555 TLRLNL--DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N+ ++ I +AL A+ FV LP L + E G L
Sbjct: 421 TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLL 470
Score = 36.2 bits (84), Expect = 0.056
Identities = 23/112 (20%), Positives = 47/112 (41%), Gaps = 18/112 (16%)
Query: 49 DSNLPTFLRSWINCLFS-----VLYLMPVT---------ITVFFYGFVISLGTLFAAKRL 94
+S L L+ ++ F VL+ +P+ I F +++S + + +
Sbjct: 30 ESTLAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVSNKVVRDI 89
Query: 95 HEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVN----TLDNKLTLSVQQTLS 142
++ + +L FFD P G +LSR + D + + V++TL+
Sbjct: 90 RVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLT 141
Score = 32.4 bits (74), Expect = 0.86
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 17/116 (14%)
Query: 27 SFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTITVFFYGFVISLG 86
SFFD P G ++SR + D E V S + +V+ L I + +Y + ++L
Sbjct: 103 SFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGL---FIVLLYYSWQLTLI 159
Query: 87 TLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLSVQQTLS 142
+ +L ++R V + L R S ++ ++T ++TL
Sbjct: 160 VVVML-----PVLSILMRR---------VSKRLRRISKEIQNSMGQVTTVAEETLQ 201
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 110 bits (276), Expect = 5e-27
Identities = 80/271 (29%), Positives = 124/271 (45%), Gaps = 66/271 (24%)
Query: 197 GEVEFKDYKVRYREG----LE----------LVGIVGRTGAGKSSLTLALFRIIEPADGT 242
G++ KD +Y EG LE VG++GRTG+GKS+L A R++ +G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 243 IIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIF 302
I IDGV ++ L R +IPQ VFIF
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQ------------KVFIFS----------------- 90
Query: 303 TEDVKPLIITPFCSNLQRFYVATSRQLKRL-ESVSRSPIYSHF----------GETVTGN 351
F NL + + ++ ++ E V + F G V +
Sbjct: 91 ---------GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSH 141
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411
G +QL+CLAR++L K KIL+LDE +A +D T +I+ T++ FA CTV+ HR+ +
Sbjct: 142 -GHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAM 200
Query: 412 IDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
++ R LV+++ V ++DS L+ N+ S F
Sbjct: 201 LECQRFLVIEENKVRQYDSIQKLL-NEKSHF 230
Score = 96.1 bits (239), Expect = 5e-22
Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ S+S +VG++GRTG+GKS+L A R++ +G I IDGV ++ L R +
Sbjct: 23 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
IPQ +FSGT R NLDP G+ SDE IWK E L + + P +L + +GG
Sbjct: 82 IPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 113 bits (284), Expect = 2e-26
Identities = 86/279 (30%), Positives = 130/279 (46%), Gaps = 52/279 (18%)
Query: 165 IVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG------------- 211
+VA ER+ E + P++ ++ ND +P + G ++ + YR+
Sbjct: 312 VVAGERVFELMDGPRQ-QYGNDDRPL----QSGRIDIDNVSFAYRDDNLVLQNINLSVPS 366
Query: 212 LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLAT 271
V +VG TG+GKS+L L +G I +DG + +L LR + ++ Q
Sbjct: 367 RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQ---- 422
Query: 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKR 331
PV V F V+L D S Q + + QL
Sbjct: 423 -------DPV-------VLADTFLANVTL--GRD---------ISEEQVWQALETVQLAE 457
Query: 332 LESVSRSPIYSHFGETVTGN---VGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
L +Y+ GE GN VGQ+QL+ LAR L++ +ILILDEATA ID T+ I
Sbjct: 458 LARSLPDGLYTPLGEQ--GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515
Query: 389 QSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
Q + + H T++ IAHRL+TI+++D +LVL +G VE
Sbjct: 516 QQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVE 554
Score = 72.4 bits (178), Expect = 2e-13
Identities = 37/108 (34%), Positives = 56/108 (51%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG TG+GKS+L L +G I +DG + +L LR + ++ QDPV+ +
Sbjct: 370 VALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD 429
Query: 555 TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T N+ + S+E +W+ALE L +LP L + E G NL
Sbjct: 430 TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477
Score = 35.1 bits (81), Expect = 0.10
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Query: 22 LHSCMSFFDTTPVGRMISRFSQDVETVD----SNLPTFLRS 58
L +S FDT PVG++ISR + D E + + + T LRS
Sbjct: 109 LRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRS 149
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 111 bits (279), Expect = 2e-25
Identities = 85/313 (27%), Positives = 139/313 (44%), Gaps = 56/313 (17%)
Query: 146 KITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPE-KGEVEFKDY 204
++TQ + L ++ D + +A+ER+ + +P E PE +G + F++
Sbjct: 406 RVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTE----PRSAGLAALPELRGAITFENI 461
Query: 205 KVRYRE--------------GLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
+ RY E +GIVG +G+GKS+LT L R+ P G +++DGVD+
Sbjct: 462 RFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDL 521
Query: 251 RTLGLHTLRSRLTIIPQ--VLATIFV---ICYSTPVFIFVIVPVSVLYFFIQVSLIFTED 305
LR ++ ++ Q VL + + I P + L D
Sbjct: 522 AIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-------GAPFEHVIHAAKLAGAHD 574
Query: 306 VKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALL 365
F S L + Y + + G ++G QR I +ARAL+
Sbjct: 575 --------FISELPQGY--------------NTEVGEK-GANLSGGQRQR--IAIARALV 609
Query: 366 RKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLV 425
+ILI DEAT+A+D E++ LI +R TV+ IAHRL+T+ DR++VL+KG +
Sbjct: 610 GNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQI 669
Query: 426 VEFDSPSVLMKNK 438
E L+ +
Sbjct: 670 AESGRHEELLALQ 682
Score = 72.1 bits (177), Expect = 4e-13
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+GIVG +G+GKS+LT L R+ P G +++DGVD+ LR ++ ++ Q+ VLFS
Sbjct: 486 IGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR 545
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++R N+ +P + E + A +LA + F+S LP EV E G NL
Sbjct: 546 SIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 101 bits (254), Expect = 2e-24
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V I+GR G+GKS+L L + +P G++++DG DIR L LR + +PQD LF G
Sbjct: 33 VAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYG 92
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
TLR N+ P + DE I +A ELA + FV+ P L ++ E G L
Sbjct: 93 TLRDNITLGAP--LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGL 141
Score = 70.7 bits (174), Expect = 8e-14
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ + LARALL IL+LDE T+A+D+ +++ ++ +R T++ I HR + +
Sbjct: 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD 203
Query: 413 DSDRVLVLDKGLVV 426
DR++V+D G +V
Sbjct: 204 LVDRIIVMDSGRIV 217
Score = 55.3 bits (134), Expect = 1e-08
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 197 GEVEFKDYKVRY---------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADG 241
G +EF++ Y R G E V I+GR G+GKS+L L + +P G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAG-EKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 242 TIIIDGVDIRTLGLHTLRSRLTIIPQ 267
++++DG DIR L LR + +PQ
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQ 85
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 99 bits (250), Expect = 9e-24
Identities = 42/95 (44%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q I +ARALLR KIL+LDEAT+A+D E++ L+Q + T + IAHRL+TI
Sbjct: 143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
++D + VL G VVE + LM K ++ + K
Sbjct: 203 NADLIAVLQNGQVVEQGTHDELMAQKG-VYAKLVK 236
Score = 88.0 bits (219), Expect = 1e-19
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 5/119 (4%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
L++ V +VG +G GKS++ L R +P G I++DGVDIR L L LRS++ ++
Sbjct: 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVS 83
Query: 547 QDPVLFSGTLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
Q+PVLF GT+ N+ P +++DE + +A + A+++ F+ +LP V E G L
Sbjct: 84 QEPVLFDGTIAENIRYGKP--DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQL 140
Score = 59.5 bits (145), Expect = 5e-10
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 17/85 (20%)
Query: 199 VEFKDYKVRY----------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGT 242
+EFK+ RY G + V +VG +G GKS++ L R +P G
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPG-KTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 243 IIIDGVDIRTLGLHTLRSRLTIIPQ 267
I++DGVDIR L L LRS++ ++ Q
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQ 84
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 105 bits (263), Expect = 1e-23
Identities = 85/312 (27%), Positives = 145/312 (46%), Gaps = 53/312 (16%)
Query: 145 FKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDY 204
++ + + L + S + + A E++ EY + P +G +EF+D
Sbjct: 428 EQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPL---NLEGLIEFQDV 484
Query: 205 KVRYR--------EGL-------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
Y +GL E+V +VG +G+GKS++ L + +P G +++DGV
Sbjct: 485 SFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP 544
Query: 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL 309
+ H L ++ ++ Q PV V ++ Y L T D + +
Sbjct: 545 LVQYDHHYLHRQVALVGQ-----------EPVLFSGSVRENIAY-----GLTDTPDEEIM 588
Query: 310 IITPFCSNLQRFYVATSRQLKRLESVSRSP--IYSHFGETVTG-NVGQRQLICLARALLR 366
A ++ + + P + GE + + GQ+Q I +ARAL+R
Sbjct: 589 --------------AAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634
Query: 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVV 426
K ++LILDEAT+A+D E + L+Q + A TVL IAHRL+T+ +D++LVL KG VV
Sbjct: 635 KPRVLILDEATSALDAECEQLLQES--RSRASRTVLLIAHRLSTVERADQILVLKKGSVV 692
Query: 427 EFDSPSVLMKNK 438
E + LM+++
Sbjct: 693 EMGTHKQLMEDQ 704
Score = 67.8 bits (166), Expect = 8e-12
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG +G+GKS++ L + +P G +++DGV + H L ++ ++ Q+PVLFSG
Sbjct: 510 VALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG 569
Query: 555 TLRLNLD-PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++R N+ + ++ DE I A + A+ + F+ P EV E G L
Sbjct: 570 SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQL 618
Score = 46.3 bits (110), Expect = 4e-05
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 22 LHSCMSFFDTTPVGRM-ISRFSQDVETV---DSNLPTFLRS-WINCLFSVLYLMPVTITV 76
L S F + +G M I ++ V D P + + CL S+ +++
Sbjct: 163 LISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIA----SSVSA 218
Query: 77 FFYG--FVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLT 134
G F ++ + R+ E L +S+LR FFD G + SR SSD T+ L+
Sbjct: 219 GLRGGSFNYTMARINL--RIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLS 276
Query: 135 LSV 137
L+V
Sbjct: 277 LNV 279
Score = 38.2 bits (89), Expect = 0.012
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 13 LHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPT----FLRSWINCLFSVLY 68
+ + R++L + FFD G + SR S D +T+ +L LR+ + L +L
Sbjct: 236 IREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLV-MLLGLLG 294
Query: 69 LM 70
M
Sbjct: 295 FM 296
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 99.2 bits (248), Expect = 1e-23
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ I +ARALL+ ILILDEAT+A+D E++ L+Q+ + + T IAHRL+TI
Sbjct: 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIE 201
Query: 413 DSDRVLVLDKGLVVE 427
++DR++VL+ G +VE
Sbjct: 202 NADRIVVLEDGKIVE 216
Score = 89.2 bits (222), Expect = 4e-20
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG +G+GKS+L + R + G I+IDG D+R L +LR ++ ++ QD LF+
Sbjct: 31 VALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFND 90
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N+ P ++ E + +A A+ + F+ LP + E G L
Sbjct: 91 TVAENIAYGRP--GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKL 139
Score = 60.3 bits (147), Expect = 3e-10
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 199 VEFKDYKVRYR--------------EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244
VEFK+ RY E V +VG +G+GKS+L + R + G I+
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 245 IDGVDIRTLGLHTLRSRLTIIPQ 267
IDG D+R L +LR ++ ++ Q
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQ 83
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 98.5 bits (246), Expect = 3e-23
Identities = 36/93 (38%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
G++Q + +ARA+L+ IL+LDEAT+A+D T+ IQ+ +R T + IAHRL+TI+
Sbjct: 141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV 200
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445
++D+++VL G +VE + L+ K ++ M
Sbjct: 201 NADKIIVLKDGRIVERGTHEELL-AKGGLYAEM 232
Score = 88.1 bits (219), Expect = 1e-19
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 11/115 (9%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVG +G+GKS++ LFR + + G+I+IDG DIR + L +LR + ++PQD VLF+
Sbjct: 30 VAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFND 89
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE------GGE 600
T+ N+ P +++DE + +A + A ++ + P V E GGE
Sbjct: 90 TIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGE 142
Score = 66.1 bits (162), Expect = 3e-12
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ--VL--A 270
V IVG +G+GKS++ LFR + + G+I+IDG DIR + L +LR + ++PQ VL
Sbjct: 30 VAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFND 89
Query: 271 TI-FVICYSTP 280
TI + I Y P
Sbjct: 90 TIGYNIRYGRP 100
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 102 bits (257), Expect = 8e-23
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V I+GR G+GKS+L L + +P +G++++DGVDIR + LR + +PQDP LF G
Sbjct: 494 VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG 553
Query: 555 TLRLNLD-PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
TLR N+ + DE I +A ELA + FV P L ++ E G +L
Sbjct: 554 TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602
Score = 69.1 bits (170), Expect = 3e-12
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ + LARALLR IL+LDE T+A+D +++ + ++ A T++ + HR + +
Sbjct: 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD 664
Query: 413 DSDRVLVLDKGLVV 426
DR++V+D G +V
Sbjct: 665 LVDRIIVMDNGRIV 678
Score = 61.4 bits (150), Expect = 8e-10
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 166 VAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRY---------------RE 210
A++ + E + P E + +GE+EF++ Y R
Sbjct: 433 TALQSLDELMQLPVERP--EGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRP 490
Query: 211 GLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
G E V I+GR G+GKS+L L + +P +G++++DGVDIR + LR + +PQ
Sbjct: 491 G-EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ 546
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 100 bits (250), Expect = 3e-22
Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 51/274 (18%)
Query: 196 KGEVEFKDYKVRY---REGL----------ELVGIVGRTGAGKSSLTLALFRIIEPADGT 242
KG VEF+ + +G+ + V IVG TGAGK++L L R+ +P G
Sbjct: 332 KGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 243 IIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIF 302
I+IDG+DI T+ +LR + +AT+F Q + +F
Sbjct: 392 ILIDGIDINTVTRESLR-------KSIATVF-----------------------QDAGLF 421
Query: 303 TEDVKPLI-ITPFCSNLQRFYVATSRQLKRLESVSRSPIY----SHFGETVTGNVGQRQL 357
++ I + + + Y A + RS Y G ++G G+RQ
Sbjct: 422 NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG--GERQR 479
Query: 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRV 417
+ +ARA+L+ IL+LDEAT+A+D+ET+ +++ I + + T IAHRL+T+ ++D V
Sbjct: 480 LAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLV 539
Query: 418 LVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
L LD+G ++E S L+ K FY + + +GL
Sbjct: 540 LFLDQGRLIEKGSFQELI-QKDGRFYKLLRRSGL 572
Score = 61.8 bits (150), Expect = 5e-10
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V V IVG TGAGK++L L R+ +P G I+IDG+DI T+ +LR +
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413
Query: 545 IPQDPVLFSGTLRLNLDPVGE-SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ QD LF+ ++R N+ E ++DE +++A + A + F+ V E G L
Sbjct: 414 VFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 99.9 bits (250), Expect = 3e-22
Identities = 86/334 (25%), Positives = 146/334 (43%), Gaps = 59/334 (17%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQVLAT 271
E+ ++G GAGKS+L L + P G I+IDG + L + + + Q L+
Sbjct: 35 EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELS- 93
Query: 272 IFVICYSTPVFIFVIVP-VSV---LYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR 327
+VP +SV ++ + E + + + +
Sbjct: 94 --------------LVPNLSVAENIF-------LGREPTRRFGLI----DRKAMRRRARE 128
Query: 328 QLKRLESVSRSPIYSHFGETVTGN--VGQRQLICLARALLRKTKILILDEATAAIDL-ET 384
L RL + P +T+ G+ + QRQ++ +ARAL ++LILDE TAA+ + ET
Sbjct: 129 LLARLG-LDIDP------DTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKET 181
Query: 385 DDLIQSTIRSEFAH-CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ L IR A ++ I+HRL+ + + +DR+ VL G VV P+ ++ +
Sbjct: 182 ERLF-DLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG-TRPTAAETSEDELV 239
Query: 443 YSM-AKDAGLAWLAVRLETVGNLITFSAALLAVLSKETLNAGLVGLSVSYAMQ----VGI 497
M ++ + E +G VL L+ G VS+ ++ +GI
Sbjct: 240 RLMVGRELEDLFPEPPEEGIGEP---------VLEVRNLSGGGKVRDVSFTVRAGEILGI 290
Query: 498 VGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531
G GAG++ L ALF + G I++DG +R
Sbjct: 291 AGLVGAGRTELARALFGARPASSGEILLDGKPVR 324
Score = 42.1 bits (100), Expect = 8e-04
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQDPVLF 552
++G GAGKS+L L + P G I+IDG + L + + + Q+ L
Sbjct: 37 HALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95
Score = 40.6 bits (96), Expect = 0.002
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIID- 413
Q + LAR L K+LILDE T ID+ I IR A +L I+ L ++
Sbjct: 408 QKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGL 467
Query: 414 SDRVLVLDKGLVV 426
SDR+LV+ +G +V
Sbjct: 468 SDRILVMREGRIV 480
Score = 39.8 bits (94), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
R G E++GI G GAG++ L ALF + G I++DG +R
Sbjct: 283 RAG-EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVR 324
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 100 bits (252), Expect = 4e-22
Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVGR+G+GKS+L L + +P G I++DGVD+ + L +LR ++ + QDP LFSG
Sbjct: 502 VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG 561
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++R N+ +P E++DE I +A +LA + F+ NLP V EGG NL
Sbjct: 562 SIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANL 610
Score = 95.0 bits (237), Expect = 2e-20
Identities = 43/83 (51%), Positives = 58/83 (69%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ + LARALL K KIL+LDEAT+A+D ET+ +I + TV+ IAHRL+TI
Sbjct: 613 GQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672
Query: 413 DSDRVLVLDKGLVVEFDSPSVLM 435
+DR++VLD+G +VE S L+
Sbjct: 673 SADRIIVLDQGKIVEQGSHEELL 695
Score = 86.1 bits (214), Expect = 2e-17
Identities = 79/342 (23%), Positives = 132/342 (38%), Gaps = 89/342 (26%)
Query: 6 SIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLP-TFLRSWINCLF 64
R L R++L +S+F+ VG +ISR ++E + L + L I+ LF
Sbjct: 222 GKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLF 280
Query: 65 SVLYL-------MPVTITVFFYGFVISLGTLFAAKRLHEKLLKSM--------------- 102
++++L +T+ V + L TL L K K +
Sbjct: 281 ALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIK 340
Query: 103 ---------------LRWSPLF-------FDTTPVGRVLSRFSSDVN------------- 127
+W F T + +L+ S +
Sbjct: 341 GIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAI 400
Query: 128 -TLDNKLTL-------SVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQ 179
L+ +LTL + P IT+ L ++ +D + VA+ER+ + +TP
Sbjct: 401 LVLEGELTLGQLVAFNMLAGYFISP--ITR----LSQLWTDFQQAKVALERLGDILDTPP 454
Query: 180 EAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGL--------------ELVGIVGRTGAGK 225
E E DK +GE+EF++ RY E V IVGR+G+GK
Sbjct: 455 EQE--GDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGK 512
Query: 226 SSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
S+L L + +P G I++DGVD+ + L +LR ++ + Q
Sbjct: 513 STLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQ 554
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 93.3 bits (232), Expect = 1e-21
Identities = 69/252 (27%), Positives = 112/252 (44%), Gaps = 56/252 (22%)
Query: 196 KGEVEFKDYKVRYR--------EGL-------ELVGIVGRTGAGKSSLTLALFRIIEPAD 240
KG V+F++ Y + + E+ +VG +G+GKS++ L +P
Sbjct: 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSL 300
G +++DG I L S+++++ Q PV + ++ Y S
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQ-----------EPVLFARSLQDNIAYGLQSCS- 116
Query: 301 IFTEDVKPLIITP----FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV---G 353
E VK F S L Y + GE G+ G
Sbjct: 117 --FECVKEAAQKAHAHSFISELASGY------------------DTEVGEK--GSQLSGG 154
Query: 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID 413
Q+Q + +ARAL+R ++LILDEAT+A+D E++ +Q + TVL IAHRL+T+
Sbjct: 155 QKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER 214
Query: 414 SDRVLVLDKGLV 425
+D++LVLD G +
Sbjct: 215 ADQILVLDGGRI 226
Score = 65.2 bits (159), Expect = 7e-12
Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
+VG +G+GKS++ L +P G +++DG I L S+++++ Q+PVLF+ +L
Sbjct: 45 LVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSL 104
Query: 557 RLNLD-PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ N+ + S E + +A + AH ++F+S L + EV E G L
Sbjct: 105 QDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQL 151
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 94.3 bits (235), Expect = 3e-20
Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 210 EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269
E V +VG +GAGKS+L L ++P +G+I ++GV + + R ++ +PQ
Sbjct: 346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ-- 403
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
P + ++ E++ + P S+ + L
Sbjct: 404 ---------HPF----LFAGTIA-----------ENI--RLARPDASDAEIREALERAGL 437
Query: 330 KRLESVSRSPIYSHFGETVTG-NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
+ + + GE G + GQ Q + LARA LR +L+LDE TA +D ET+ +
Sbjct: 438 DEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV 497
Query: 389 QSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL 420
+R+ TVL + HRL +DR++VL
Sbjct: 498 LEALRALAQGRTVLLVTHRLALAALADRIVVL 529
Score = 85.4 bits (212), Expect = 2e-17
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG +GAGKS+L L ++P +G+I ++GV + + R ++ +PQ P LF+G
Sbjct: 351 VALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG 410
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N+ P ++SD I +ALE A L+ FV+ LP L + EGG L
Sbjct: 411 TIAENIRLARP--DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGL 459
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 92.7 bits (231), Expect = 8e-20
Identities = 36/87 (41%), Positives = 51/87 (58%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411
GQ Q + LARALL +L+LDE TA +D ET+ +I ++ TVL I HRL
Sbjct: 459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDA 518
Query: 412 IDSDRVLVLDKGLVVEFDSPSVLMKNK 438
D+DR++VLD G +VE + L + +
Sbjct: 519 ADADRIVVLDNGRLVEQGTHEELSEKQ 545
Score = 88.9 bits (221), Expect = 1e-18
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS 553
+VG +GAGKS+L L + P G I ++G+D+R L R +++ + Q+P LF+
Sbjct: 349 LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408
Query: 554 GTLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
GT+R N+ P ++SDE I AL+ A L FV P L + EGG L
Sbjct: 409 GTIRENILLARP--DASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGAGL 457
Score = 61.5 bits (150), Expect = 6e-10
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 160 DVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGL------- 212
A +++ E+P A + +K + E+ ++ RY +G
Sbjct: 283 AAAAGEAAADKLFTLLESP-VATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLN 341
Query: 213 ------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 266
+L +VG +GAGKS+L L + P G I ++G+D+R L R +++ +
Sbjct: 342 LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVS 401
Query: 267 Q 267
Q
Sbjct: 402 Q 402
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 89.3 bits (222), Expect = 9e-19
Identities = 39/86 (45%), Positives = 57/86 (66%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
G++Q + +AR +L+ ILILDEAT+A+D T+ IQ+ +R A T L IAHRL+TII
Sbjct: 403 GEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTII 462
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNK 438
D+D ++VLD G +VE + L+
Sbjct: 463 DADEIIVLDNGRIVERGTHEELLAAG 488
Score = 77.0 bits (190), Expect = 7e-15
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVG +GAGKS++ LFR + G+I IDG DIR + +LR + I+PQD VLF+
Sbjct: 292 VAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND 351
Query: 555 TLRLNLDPVGES-SDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
T+ N+ + E + A E A ++ F+ +LP V E G
Sbjct: 352 TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397
Score = 51.6 bits (124), Expect = 7e-07
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 22/143 (15%)
Query: 139 QTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWP-EKG 197
LS P LN+L ++ + +E++ + EAE + WP G
Sbjct: 210 FQLSIP------LNFLGFSYREIRQALTDMEKMFDL--LDVEAEVSDAPDAPPLWPVRLG 261
Query: 198 EVEFKDYKVRY---REGL----------ELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244
V F + Y R L + V IVG +GAGKS++ LFR + G+I
Sbjct: 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT 321
Query: 245 IDGVDIRTLGLHTLRSRLTIIPQ 267
IDG DIR + +LR + I+PQ
Sbjct: 322 IDGQDIRDVTQQSLRRAIGIVPQ 344
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 88.9 bits (221), Expect = 1e-18
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ I +ARALLR + ILILDEAT+A+D E++ IQ+ + + T L IAHRL+TI
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNK 438
+D +LV++ G +VE + + L+
Sbjct: 544 KADEILVVEDGEIVERGTHAELLAQN 569
Score = 60.4 bits (147), Expect = 1e-09
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 477 KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH 536
KE + + V +VGR+G+GKS++ L R + +G I++DG D+R L
Sbjct: 354 KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLA 413
Query: 537 TLRSRLTIIPQDPVLFSGTLRLNLDPVGES--SDEAIWKALELAHLNTFVSNLPARLQHE 594
+LR+++ ++ Q+ LF+ T+ N+ S E I +A +A+ F++ + L
Sbjct: 414 SLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTV 473
Query: 595 VSEGGENL 602
+ E G L
Sbjct: 474 IGENGVLL 481
Score = 49.6 bits (119), Expect = 3e-06
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 14/86 (16%)
Query: 196 KGEVEFKDYKVRY--REGLEL------------VGIVGRTGAGKSSLTLALFRIIEPADG 241
KG++EF++ Y +E L V +VGR+G+GKS++ L R + +G
Sbjct: 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398
Query: 242 TIIIDGVDIRTLGLHTLRSRLTIIPQ 267
I++DG D+R L +LR+++ ++ Q
Sbjct: 399 EILLDGHDLRDYTLASLRNQVALVSQ 424
Score = 28.8 bits (65), Expect = 9.2
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 17 VLRNILHSCMSFFDTTPVGRMISRFSQDVETVDS 50
+ +++ +SFFD G ++SR + D E V S
Sbjct: 104 LFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVAS 137
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 85.8 bits (213), Expect = 2e-18
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 39/229 (17%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ G++G GAGK++L L +++P G I++ G D+ +R R+ +PQ
Sbjct: 32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRRRIGYVPQ----- 85
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
P + L FF ++ + E+ + I L+ F L
Sbjct: 86 ------EPSLYPELTVRENLEFFARLYGLSKEEAEERIE----ELLELF---------GL 126
Query: 333 ESVSRSPI--YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
E + + S G +Q + +A ALL ++LILDE T+ +D E+ I
Sbjct: 127 EDKANKKVRTLSG---------GMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWE 177
Query: 391 TIRSEFAH--CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436
+R T+L H L + DRV++L+ G ++ +P L +
Sbjct: 178 LLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
Score = 48.5 bits (116), Expect = 4e-06
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
G++G GAGK++L L +++P G I++ G D+ +R R+ +PQ+P L+
Sbjct: 34 FGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRRRIGYVPQEPSLYPE 92
Query: 555 -TLRLNLD-------PVGESSDEAIWKALELAHL----NTFVSNL 587
T+R NL+ E ++E I + LEL L N V L
Sbjct: 93 LTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTL 137
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 85.7 bits (213), Expect = 1e-17
Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 22/219 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
G RQ + +A AL K K+LI DE T A+D+ T I ++ VL I H L
Sbjct: 158 GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV 217
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKN----------KASIFY-SMAKDAGLAWLAVR- 457
+ + +DRV+V+ KG +VE ++ N A +R
Sbjct: 218 VAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRA 277
Query: 458 --LETVGNLITF---SAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLAL 512
L +V NL L E V + +G+VG +G+GKS+L L
Sbjct: 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARIL 337
Query: 513 FRIIEPADGTIIIDG--VDIRTLGLHTLRSRLTIIPQDP 549
++ P+ G+II DG +D+ L LR R+ ++ QDP
Sbjct: 338 AGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP 376
Score = 82.6 bits (205), Expect = 1e-16
Identities = 71/237 (29%), Positives = 112/237 (47%), Gaps = 39/237 (16%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268
REG E +G+VG +G+GKS+L L ++ P+ G+II DG D+ G R R I Q+
Sbjct: 315 REG-ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRI--QM 371
Query: 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ 328
+F YS+ + P + + E PL I S +R A +
Sbjct: 372 ---VFQDPYSS------LNPRMTVGDIL------AE---PLRIHGGGSGAER--RARVAE 411
Query: 329 LKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
L L + + + E ++G GQRQ + +ARAL + K+LILDE +A+D+ +
Sbjct: 412 LLELVGLPPEFLDRYPHE-LSG--GQRQRVAIARALALEPKLLILDEPVSALDV----SV 464
Query: 389 QSTI-------RSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
Q+ + + E T L I+H L + +DRV V+ G +VE + +N
Sbjct: 465 QAQVLNLLKDLQEELG-LTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
Score = 52.2 bits (126), Expect = 5e-07
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEP----ADGTIIIDGVDIRTLGLHTLRS----RLTIIP 546
+GIVG +G+GKS+L LAL ++ G +I+DG D+ L +R R+ +I
Sbjct: 38 LGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIF 97
Query: 547 QDP 549
QDP
Sbjct: 98 QDP 100
Score = 49.9 bits (120), Expect = 2e-06
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEP----ADGTIIIDGVDIRTLGLHTLRS----RLTI 264
E++GIVG +G+GKS+L LAL ++ G +I+DG D+ L +R R+ +
Sbjct: 36 EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAM 95
Query: 265 IPQ 267
I Q
Sbjct: 96 IFQ 98
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 86.2 bits (214), Expect = 1e-17
Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ + +ARAL+R ILILDEAT+A+D ET+ +I +R CT + +AHRL+TI
Sbjct: 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRR--GCTCIIVAHRLSTIR 676
Query: 413 DSDRVLVLDKGLVVE 427
D D ++VL++G VV+
Sbjct: 677 DCDEIIVLERGKVVQ 691
Score = 65.0 bits (159), Expect = 6e-11
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
L++ +V +VG +G+GKS++ + + +P G I+ DG+ + L + + ++
Sbjct: 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD 559
Query: 547 QDPVLFSGTLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
QD LF GT+R NL DP D + +A + A ++ +++ P E++EGG NL
Sbjct: 560 QDIFLFEGTVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANL 616
Score = 34.9 bits (81), Expect = 0.14
Identities = 35/164 (21%), Positives = 62/164 (37%), Gaps = 35/164 (21%)
Query: 118 VLSRFSSDVNTLDNKLTLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGET 177
++S F VN L + TL + + LN L DV N + E
Sbjct: 418 LMSSFLEPVNNL-----VGFGGTLQE---LEGDLNRL----DDVLRN-----PVDPLLEE 460
Query: 178 PQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYR-------EGLEL-------VGIVGRTGA 223
+ ++ P+ G VE ++ Y E L V +VG +G+
Sbjct: 461 EEAPAAGSEPSPRLS----GYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGS 516
Query: 224 GKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
GKS++ + + +P G I+ DG+ + L + + ++ Q
Sbjct: 517 GKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQ 560
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 84.5 bits (210), Expect = 4e-17
Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 465 ITFSAALLAVLSKE-TLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI 523
+T A L +LS + AG + ++ ++ +VG +GAGK+SL AL + P G++
Sbjct: 348 VTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSL 406
Query: 524 IIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL---DPVGESSDEAIWKALELAHL 580
I+G+++R L + R L+ + Q+P L GTLR N+ +P ++SDE + +ALE A +
Sbjct: 407 KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWV 464
Query: 581 NTFVSNLPARLQHEVSEGG 599
+ F+ LP L + +
Sbjct: 465 SEFLPLLPQGLDTPIGDQA 483
Score = 79.1 bits (196), Expect = 2e-15
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411
VGQ Q + LARALL+ ++L+LDE TA++D ++ L+ + + T L + H+L +
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDL 547
Query: 412 IDSDRVLVLDKGLVVE 427
D++ V+ G +V+
Sbjct: 548 AQWDQIWVMQDGQIVQ 563
Score = 39.8 bits (94), Expect = 0.004
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 16/111 (14%)
Query: 165 IVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGLELVG-------- 216
+ A E + + ETP +K+ P +E +D ++ +G L G
Sbjct: 318 VGAAESLVTFLETPLAHPQQGEKELASNDPV--TIEAEDLEILSPDGKTLAGPLNFTLPA 375
Query: 217 -----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL 262
+VG +GAGK+SL AL + P G++ I+G+++R L + R L
Sbjct: 376 GQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHL 425
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 83.9 bits (208), Expect = 7e-17
Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 9/105 (8%)
Query: 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVL 402
G T++G GQRQ + +ARAL+RK +IL+ DEAT+A+D T Q+ + T +
Sbjct: 586 GGTLSG--GQRQRLLIARALVRKPRILLFDEATSALDNRT----QAIVSESLERLKVTRI 639
Query: 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
IAHRL+TI ++DR+ VLD G VV+ + LM + +F +A+
Sbjct: 640 VIAHRLSTIRNADRIYVLDAGRVVQQGTYDELM-AREGLFAQLAR 683
Score = 61.1 bits (149), Expect = 1e-09
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 495 VGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV 550
V IVG +G+GKS+L R++ P G++ DG D+ L + +R +L ++ Q+
Sbjct: 482 VAIVGPSGSGKSTL----LRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGR 537
Query: 551 LFSGTLRLNL-DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
L SG++ N+ + DEA W+A +A L + +P + +SEGG L
Sbjct: 538 LMSGSIFENIAGGAPLTLDEA-WEAARMAGLAEDIRAMPMGMHTVISEGGGTL 589
Score = 43.4 bits (103), Expect = 3e-04
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLGLH 256
D ++ G E V IVG +G+GKS+ L R++ P G++ DG D+ L +
Sbjct: 469 LDDVSLQIEPG-EFVAIVGPSGSGKST----LLRLLLGFETPESGSVFYDGQDLAGLDVQ 523
Query: 257 TLRSRLTIIPQ 267
+R +L ++ Q
Sbjct: 524 AVRRQLGVVLQ 534
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 83.5 bits (207), Expect = 8e-17
Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
L+++ +V I+GR+G+GKS+L L +P G+I ++GV+I +L LR +++
Sbjct: 357 FNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISV 416
Query: 545 IPQDPVLFSGTLRLNLD-PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ Q LFSGTLR NL ++SDE +W AL+ L + + P L + EGG L
Sbjct: 417 LTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRL 475
Score = 67.4 bits (165), Expect = 1e-11
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404
G ++G G+R+ + LARALL + +LDE T +D T+ + + + T+L +
Sbjct: 472 GRRLSG--GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMV 529
Query: 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNK 438
HRL + DR++VLD G ++E + + L+ N
Sbjct: 530 THRLRGLERMDRIIVLDNGKIIEEGTHAELLANN 563
Score = 41.5 bits (98), Expect = 0.001
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRS 260
K++ + +G E V I+GR+G+GKS+L L +P G+I ++GV+I +L LR
Sbjct: 354 LKNFNLTLAQG-EKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRE 412
Query: 261 RLTIIPQ 267
++++ Q
Sbjct: 413 TISVLTQ 419
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 77.3 bits (191), Expect = 1e-16
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 344 FGETVTGNV---GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS-EFAHC 399
F ++ N+ GQRQ + LARAL +IL+LDE + +D+E + + I + + A
Sbjct: 88 FSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGA 147
Query: 400 TVLTIAHRLNTIIDSDRVLVLDKGLV 425
T + IAHR T+ +DR+LVL+ G V
Sbjct: 148 TRIVIAHRPETLASADRILVLEDGRV 173
Score = 64.2 bits (157), Expect = 5e-12
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ I+G +G+GKS+L + ++ P G + +DG DI + L + +PQD LFSG
Sbjct: 31 LAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG 90
Query: 555 TLRLN 559
++ N
Sbjct: 91 SIAEN 95
Score = 52.6 bits (127), Expect = 5e-08
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E + I+G +G+GKS+L + ++ P G + +DG DI + L + +PQ
Sbjct: 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQ 83
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 82.3 bits (204), Expect = 2e-16
Identities = 40/103 (38%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
G+RQ + +ARALL+ ILILDEAT+A+D+ET+ +++ + T IAHRL+T+
Sbjct: 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR 534
Query: 413 DSDRVLVLDKGLVVE---FDSPSVLMKNKASIFYSMAKDAGLA 452
++DR+LV D G VVE FD + + F ++ + G+
Sbjct: 535 NADRILVFDNGRVVESGSFDE----LVARGGRFAALLRAQGML 573
Score = 76.5 bits (189), Expect = 1e-14
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVG TGAGKS+L L R+ +P G I+IDG DIRT+ +LR + ++ QD LF+
Sbjct: 364 VAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR 423
Query: 555 TLRLNLDPVG--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++ N+ VG +++DE + A E A + F+ P V E G L
Sbjct: 424 SIEDNIR-VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL 472
Score = 63.1 bits (154), Expect = 2e-10
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 13/77 (16%)
Query: 196 KGEVEFKDYKVRY---REGL----------ELVGIVGRTGAGKSSLTLALFRIIEPADGT 242
KG VEF D Y R+G+ + V IVG TGAGKS+L L R+ +P G
Sbjct: 332 KGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391
Query: 243 IIIDGVDIRTLGLHTLR 259
I+IDG DIRT+ +LR
Sbjct: 392 ILIDGTDIRTVTRASLR 408
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 79.1 bits (196), Expect = 2e-16
Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 44/229 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ GI+G G+GKS+L L +++P G +++DG DI +L L +L +PQ +
Sbjct: 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAP 88
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF----YVATSRQ 328
F ++V E V L P R
Sbjct: 89 F--------------GLTVY-----------ELVL-LGRYPHLGLFGRPSKEDEEIVEEA 122
Query: 329 LKRLESVSRSPIYSHFGETVT---GNVGQRQLICLARALLRKTKILILDEATAAIDLETD 385
L+ L + V G QR + +ARAL ++T IL+LDE T+ +D+
Sbjct: 123 LELLG------LEHLADRPVDELSGGERQR--VLIARALAQETPILLLDEPTSHLDIAHQ 174
Query: 386 DLIQSTIRS--EFAHCTVLTIAHRLN-TIIDSDRVLVLDKGLVVEFDSP 431
+ +R TV+ + H LN +D +++L G +V +P
Sbjct: 175 IEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTP 223
Score = 54.1 bits (131), Expect = 5e-08
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP----- 549
GI+G G+GKS+L L +++P G +++DG DI +L L +L +PQ P
Sbjct: 31 TGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90
Query: 550 ------VLFSGTLRLNLDPVGESSD-EAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
VL L L D E + +ALE + +L R E+S GGE
Sbjct: 91 LTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALE----LLGLEHLADRPVDELS-GGE 143
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 79.2 bits (196), Expect = 2e-16
Identities = 58/246 (23%), Positives = 98/246 (39%), Gaps = 50/246 (20%)
Query: 198 EVEFKDYKVRYREGL------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
+E ++ V Y E+ ++G GAGKS+L A+ +++P+ G I I
Sbjct: 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 246 DGVDIRTLGLHTLRSRLTI--IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303
G +R R RL I +PQ + P++V V L+
Sbjct: 64 FGKPVRKR-----RKRLRIGYVPQKSSVDRS------------FPITVK----DVVLLGR 102
Query: 304 EDVKPLIITPFCSNLQRFYVATSRQLKR--LESVSRSPIYSHFGETVTGNVGQRQLICLA 361
K + ++ L+R +E + I G GQ+Q + LA
Sbjct: 103 YGKKGWFRRLNKKDKEKV----DEALERVGMEDLRDRQIGELSG-------GQKQRVLLA 151
Query: 362 RALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLV 419
RAL + +L+LDE +D+ I ++ TVL + H L ++ DRV+
Sbjct: 152 RALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVIC 211
Query: 420 LDKGLV 425
L++ L+
Sbjct: 212 LNRHLI 217
Score = 38.0 bits (89), Expect = 0.009
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI--IPQ 547
++G GAGKS+L A+ +++P+ G I I G +R R RL I +PQ
Sbjct: 33 TALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVR-----KRRKRLRIGYVPQ 82
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 80.5 bits (199), Expect = 6e-16
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V I+G +G+GKS+L L +++P G + +DGV + +L +R R+++ QD LF
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDT 423
Query: 555 TLRLNLD-PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
T+R NL +++DE +W ALE L ++ LP L + EGG
Sbjct: 424 TVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGG 469
Score = 54.7 bits (132), Expect = 8e-08
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 167 AVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYR------EGLEL------ 214
A ERI E + + K +E +D Y +G+ L
Sbjct: 303 AAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGE 362
Query: 215 -VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
V I+G +G+GKS+L L +++P G + +DGV + +L +R R+++ Q
Sbjct: 363 RVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQ 416
Score = 49.7 bits (119), Expect = 3e-06
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRL 408
G+RQ + LARALL IL+LDE T +D ET D + + + + TV+ I H L
Sbjct: 475 GERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 76.4 bits (189), Expect = 7e-16
Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 48/242 (19%)
Query: 200 EFKDYKVRYREGL------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
E +D V Y E + IVG GAGKS+L A+ +++P G+I + G
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVK 307
+ R R+ +PQ I P+ + +V + LY + ++ K
Sbjct: 61 KPLEKE-----RKRIGYVPQ----RRSIDRDFPISVRDVV-LMGLYGHKGLFRRLSKADK 110
Query: 308 PLIITPFCSNLQRFYVATSRQLKR--LESVSRSPIYSHFGETVTGNVGQRQLICLARALL 365
+ L+R L ++ I G GQ+Q + LARAL+
Sbjct: 111 AKVD---------------EALERVGLSELADRQIGELSG-------GQQQRVLLARALV 148
Query: 366 RKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIIDS-DRVLVLDKG 423
+ +L+LDE A +D +T + I +R T+L + H L +++ DRVL+L++
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
Query: 424 LV 425
+V
Sbjct: 209 VV 210
Score = 36.0 bits (84), Expect = 0.030
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531
+ IVG GAGKS+L A+ +++P G+I + G +
Sbjct: 28 LAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE 64
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 78.5 bits (194), Expect = 2e-15
Identities = 66/223 (29%), Positives = 99/223 (44%), Gaps = 37/223 (16%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD----DLIQSTIRSEFAHCTVLTIAHRL 408
GQRQ + +A AL + +LI DE T A+D+ DL++ +++E +L I H L
Sbjct: 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKE-LQAELG-MAILFITHDL 218
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA-------GLAWLAVRLET 460
+ +DRV V+ G +VE + L + A L A L
Sbjct: 219 GIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLE 278
Query: 461 VGNL-ITF----------SAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLT 509
V +L + F L AV + L++ +G+VG +G+GKS+L
Sbjct: 279 VEDLRVWFPIKGGFLRRTVDHLRAVDG--------ISLTLRRGQTLGLVGESGSGKSTLG 330
Query: 510 LALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQDP 549
LAL R+I G I DG DI L + LR R+ ++ QDP
Sbjct: 331 LALLRLIPS-QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372
Score = 74.6 bits (184), Expect = 4e-14
Identities = 70/250 (28%), Positives = 108/250 (43%), Gaps = 53/250 (21%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTL 258
+ R G + +G+VG +G+GKS+L LAL R+I G I DG DI L + L
Sbjct: 304 DGISLTLRRG-QTLGLVGESGSGKSTLGLALLRLIPS-QGEIRFDGQDIDGLSRKEMRPL 361
Query: 259 RSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII-TPFCSN 317
R R+ ++ Q P L + V I E L + P S
Sbjct: 362 RRRMQVVFQ-------------------DPYGSLSPRMTVGQIIEE---GLRVHEPKLSA 399
Query: 318 LQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEA 376
+R R ++ LE V P + + +G GQRQ I +ARAL+ K ++++LDE
Sbjct: 400 AER----DQRVIEALEEVGLDPATRNRYPHEFSG--GQRQRIAIARALILKPELILLDEP 453
Query: 377 TAAIDLETDDLIQSTIRSEFA------HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE-- 427
T+A+D +Q+ + + L I+H L + RV+V+ G +VE
Sbjct: 454 TSALDRS----VQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509
Query: 428 -----FDSPS 432
F +P
Sbjct: 510 PTEAVFANPQ 519
Score = 31.9 bits (73), Expect = 1.1
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 9/64 (14%)
Query: 495 VGIVGRTGAGKSSLTLALFRII-----EPADGTIIIDGVDIRTLGLHTLR----SRLTII 545
+ +VG +G+GKS L++ ++ G+I+ DG D+ LR +++ +I
Sbjct: 39 LALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMI 98
Query: 546 PQDP 549
Q+P
Sbjct: 99 FQEP 102
Score = 30.7 bits (70), Expect = 2.5
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 10/68 (14%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRII-----EPADGTIIIDGVDIRTLGLHTLR---- 259
G E + +VG +G+GKS L++ ++ G+I+ DG D+ LR
Sbjct: 34 EAG-ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRG 92
Query: 260 SRLTIIPQ 267
+++ +I Q
Sbjct: 93 NKIGMIFQ 100
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 76.2 bits (187), Expect = 8e-15
Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 50/283 (17%)
Query: 172 KEYGETPQEA-EWVNDKKPKDEWPEKGEVEF--KDYKVRYREGLELVGIVGRTGAGKSSL 228
K +GE PQ A +++ K++ EK + KD + EG E+ I+G +G+GKS++
Sbjct: 12 KIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEG-EIFVIMGLSGSGKSTM 70
Query: 229 TLALFRIIEPADGTIIIDGVDIRTLGLHTLRS-RLTIIPQVLATIFVICYSTPVFIFVIV 287
L R+IEP G ++IDGVDI + LR R I V + F ++
Sbjct: 71 VRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQS------------FALM 118
Query: 288 PVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPI--YSH-F 344
P + L T F L A R+ K L+++ + + Y+H +
Sbjct: 119 P----------------HMTVLDNTAFGMELAGI-NAEERREKALDALRQVGLENYAHSY 161
Query: 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC----- 399
+ ++G G RQ + LARAL IL++DEA +A+ D LI++ ++ E
Sbjct: 162 PDELSG--GMRQRVGLARALAINPDILLMDEAFSAL----DPLIRTEMQDELVKLQAKHQ 215
Query: 400 -TVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKAS 440
T++ I+H L+ + DR+ ++ G VV+ +P ++ N A+
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPAN 258
Score = 43.5 bits (102), Expect = 3e-04
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 474 VLSKETLNAGLVGLSVSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 529
+L K L+ G+ S A++ G I+G +G+GKS++ L R+IEP G ++IDGVD
Sbjct: 34 ILEKTGLSLGVK--DASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVD 91
Query: 530 IRTLGLHTLR 539
I + LR
Sbjct: 92 IAKISDAELR 101
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 71.1 bits (175), Expect = 1e-14
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTI 411
GQRQ + LARALL +L+LDE T+ +D + + + +R TV+ + H
Sbjct: 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA 143
Query: 412 ID-SDRVLVLDKG 423
+DRV+VL G
Sbjct: 144 ELAADRVIVLKDG 156
Score = 61.9 bits (151), Expect = 2e-11
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E+V +VG G+GKS+L A+ +++P G I+IDG DI L L LR R+ +PQ
Sbjct: 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
Score = 59.6 bits (145), Expect = 2e-10
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 547
V +VG G+GKS+L A+ +++P G I+IDG DI L L LR R+ +PQ
Sbjct: 28 VALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 75.2 bits (185), Expect = 4e-14
Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 2/120 (1%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L++ + IVG +G+GKS+L L + G I+++G ++ + HTLR +
Sbjct: 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552
Query: 545 IPQDPVLFSGTLRLNL--DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+PQ+P +FSG++ NL S + IW A E+A + + N+P Q E+SE G ++
Sbjct: 553 LPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612
Score = 65.9 bits (161), Expect = 3e-11
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411
GQ+Q I LARALL +K+LILDE+T+ +D T+ I + + + T++ +AHRL+
Sbjct: 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVA 672
Query: 412 IDSDRVLVLDKGLVVE 427
SD+++VLD G ++E
Sbjct: 673 KQSDKIIVLDHGKIIE 688
Score = 42.8 bits (101), Expect = 5e-04
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
IVG +G+GKS+L L + G I+++G ++ + HTLR + +PQ
Sbjct: 501 SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQ 555
Score = 32.0 bits (73), Expect = 1.1
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 15 LVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDS----NLPTFLRSWI 60
L ++++ MSFF T G ++SRF+ +D+ L FL WI
Sbjct: 233 LSYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALASTILSLFLDMWI 282
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 72.8 bits (179), Expect = 2e-13
Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 49/226 (21%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
+++GI G TG+GKS+L + R + ++G I + + L L + RSRL ++ Q
Sbjct: 342 QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQ----- 396
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII--TPFCSNLQRFYVATSRQLK 330
TP +F++ V I P + + +VA
Sbjct: 397 ------TP-------------------FLFSDTVANNIALGRPDATQQEIEHVA------ 425
Query: 331 RLESVS----RSP--IYSHFGE---TVTGNVGQRQLICLARALLRKTKILILDEATAAID 381
RL SV R P + GE ++G QR I +ARALL +ILILD+A +A+D
Sbjct: 426 RLASVHDDILRLPQGYDTEVGERGVMLSGGQKQR--ISIARALLLNAEILILDDALSAVD 483
Query: 382 LETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
T+ I +R TV+ AHRL+ + ++ +LV+ G + +
Sbjct: 484 GRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQ 529
Score = 58.6 bits (142), Expect = 6e-09
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGT 555
GI G TG+GKS+L + R + ++G I + + L L + RSRL ++ Q P LFS T
Sbjct: 345 GICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404
Query: 556 LRLNLDPVG--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
+ N+ +G +++ + I LA ++ + LP EV E G
Sbjct: 405 VANNI-ALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERG 449
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 71.6 bits (175), Expect = 6e-13
Identities = 36/80 (45%), Positives = 60/80 (75%), Gaps = 4/80 (5%)
Query: 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTV 401
+G++++G GQ+Q I +ARALLR+ KIL+LDEAT+++D ++ LI+ TI + A T+
Sbjct: 1355 YGKSLSG--GQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTI 1412
Query: 402 LTIAHRLNTIIDSDRVLVLD 421
+TIAHR+ +I SD+++V +
Sbjct: 1413 ITIAHRIASIKRSDKIVVFN 1432
Score = 60.8 bits (147), Expect = 2e-09
Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLT--IAHRLNT 410
GQ+Q I +ARA++R KILILDEAT+++D +++ L+Q TI + + +T IAHRL+T
Sbjct: 583 GQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST 642
Query: 411 IIDSDRVLVL 420
I ++ + VL
Sbjct: 643 IRYANTIFVL 652
Score = 49.6 bits (118), Expect = 4e-06
Identities = 23/64 (35%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 498 VGRTGAGKSSLTLALFRIIEPADGTIII-DGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
VG +G GKS++ + R+ +P +G III D +++ + L RS++ ++ QDP+LFS ++
Sbjct: 417 VGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSI 476
Query: 557 RLNL 560
+ N+
Sbjct: 477 KNNI 480
Score = 44.6 bits (105), Expect = 2e-04
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 520 DGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPVGE-SSDEAIWKALELA 578
G I++DGVDI L LR+ +I+ Q+P+LF+ ++ N+ E ++ E + +A + A
Sbjct: 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFA 1335
Query: 579 HLNTFVSNLPARLQHEVSEGGENL 602
++ F+ +LP + V G++L
Sbjct: 1336 AIDEFIESLPNKYDTNVGPYGKSL 1359
Score = 38.5 bits (89), Expect = 0.011
Identities = 25/95 (26%), Positives = 51/95 (53%), Gaps = 3/95 (3%)
Query: 175 GETPQEAEWVNDKKPKDEWPEKGEVE-FKDYKVRYREGLELVGIVGRTGAGKSSLTLALF 233
G+ ++ + + K + + + +VE +KD EG + VG +G GKS++ +
Sbjct: 374 GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEG-KTYAFVGESGCGKSTILKLIE 432
Query: 234 RIIEPADGTIII-DGVDIRTLGLHTLRSRLTIIPQ 267
R+ +P +G III D +++ + L RS++ ++ Q
Sbjct: 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQ 467
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 66.3 bits (163), Expect = 9e-13
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 351 NVGQRQLICLARALLRKTKILILDEATAAIDL-ETDDLIQSTIRSEFAH-CTVLTIAHRL 408
+VG+RQ++ +ARAL R ++LILDE TAA+ E + L + IR A V+ I+HRL
Sbjct: 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK-VIRRLRAQGVAVIFISHRL 142
Query: 409 NTIID-SDRVLVLDKGLVV 426
+ + + +DRV VL G VV
Sbjct: 143 DEVFEIADRVTVLRDGRVV 161
Score = 40.1 bits (95), Expect = 0.001
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQ 267
E+ ++G GAGKS+L L + +P G I++DG ++ R+ + ++ Q
Sbjct: 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ 82
Score = 38.2 bits (90), Expect = 0.003
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQDPV 550
++G GAGKS+L L + +P G I++DG ++ R+ + ++ Q V
Sbjct: 29 HALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSV 85
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 67.3 bits (165), Expect = 2e-12
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 32/227 (14%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQVL 269
E+V I+G +GAGKS+L +L +++P G I+ +GV I L L LR + +I Q
Sbjct: 31 EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQF 90
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ- 328
+ + V+ V +L S S F Q
Sbjct: 91 NLV--------PRLSVLENV-LLGRLGYTSTWR-------------SLFGLFSKEDKAQA 128
Query: 329 LKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
L LE V T++G GQ+Q + +ARAL+++ KI++ DE A++D E+ +
Sbjct: 129 LDALERVGILDKAYQRASTLSG--GQQQRVAIARALVQQPKIILADEPVASLDPESAKKV 186
Query: 389 QSTIRSEFAH--CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432
++ TV+ H+++ +DR++ L G +V FD P+
Sbjct: 187 MDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPA 232
Score = 49.9 bits (120), Expect = 1e-06
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQDPVL 551
V I+G +GAGKS+L +L +++P G I+ +GV I L L LR + +I Q L
Sbjct: 33 VAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 66.0 bits (162), Expect = 4e-12
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQST---IRSEFAHCTVLTIAHRLN 409
GQRQ + +ARAL K+LI DE T+A+D+ I ++ E T+L I H L
Sbjct: 149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELG-LTLLFITHDLG 207
Query: 410 TI-IDSDRVLVLDKGLVVEF 428
+ +DRV V+ G +VE
Sbjct: 208 VVAKIADRVAVMYAGKIVEE 227
Score = 56.4 bits (137), Expect = 7e-09
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL---RSRLTIIPQDP 549
+G+VG +G+GKS+L A+ +++P G+II DG D+ L R + ++ QDP
Sbjct: 34 LGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDP 91
Score = 52.9 bits (128), Expect = 1e-07
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL---RSRLTII 265
++G E +G+VG +G+GKS+L A+ +++P G+II DG D+ L R + ++
Sbjct: 29 KKG-ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMV 87
Query: 266 PQ 267
Q
Sbjct: 88 FQ 89
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 66.1 bits (162), Expect = 4e-12
Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 44/233 (18%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVL 269
E V ++G +GAGKS+L L ++EP G+++IDG DI L L LR ++ +I Q
Sbjct: 28 EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQF 87
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLI-----ITPFCSNLQRFYVA 324
+I +SVL E+V L + + S F
Sbjct: 88 N--------------LIERLSVL-----------ENV--LSGRLGRRSTWRSLFGLFPKE 120
Query: 325 -TSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
R L LE V + ++G GQ+Q + +ARAL+++ K+++ DE A++D
Sbjct: 121 EKQRALAALERVGLLDKAYQRADQLSG--GQQQRVAIARALMQQPKLILADEPVASLDPA 178
Query: 384 TDDLIQSTIRSEFAH---CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432
+ + ++ TV+ H+++ + +DR++ L G +V FD P
Sbjct: 179 SSRQVMDLLK-RINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV-FDGPP 229
Score = 52.6 bits (127), Expect = 1e-07
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSR 541
V LS++ V ++G +GAGKS+L L ++EP G+++IDG DI L L LR +
Sbjct: 20 VSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79
Query: 542 LTIIPQDPVL 551
+ +I Q L
Sbjct: 80 IGMIFQQFNL 89
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 64.8 bits (158), Expect = 1e-11
Identities = 30/65 (46%), Positives = 49/65 (75%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
IVG +GAGKS+L + R+I+P +G+I+IDGVDI+T+ + LR ++ ++ Q P LF GT+
Sbjct: 34 IVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTV 93
Query: 557 RLNLD 561
+ N++
Sbjct: 94 KDNIE 98
Score = 54.4 bits (131), Expect = 4e-08
Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH 256
G+ KD V++ EG + IVG +GAGKS+L + R+I+P +G+I+IDGVDI+T+ +
Sbjct: 15 GKEILKDISVKF-EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVI 73
Query: 257 TLRSRLTIIPQ 267
LR ++ ++ Q
Sbjct: 74 DLRRKIGMVFQ 84
Score = 37.5 bits (87), Expect = 0.011
Identities = 24/79 (30%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
G+ Q + +AR L ++L+LDE T+A+D + ++I+ I + TV+ I H +
Sbjct: 135 GEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQ 194
Query: 411 IID-SDRVLVLDKGLVVEF 428
D L+KG++VE+
Sbjct: 195 AKRIGDYTAFLNKGILVEY 213
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 65.7 bits (161), Expect = 1e-11
Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 46/242 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPA-----DGTIIIDGVDIRTLG---LHTLR-SRLT 263
E++GIVG +G+GKS L A+ ++ G I+ DG D+ +L L +R +
Sbjct: 32 EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIA 91
Query: 264 IIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV 323
+I Q P++ L + + E L +
Sbjct: 92 MIFQ-------------------DPMTSLNPVMTIGDQIAE---VLRL---HGKGLSKKE 126
Query: 324 ATSRQLKRLESV---SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAI 380
A R ++ LE V + ++G + QR +I + AL K+LI DE T A+
Sbjct: 127 AKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAM--ALALNPKLLIADEPTTAL 184
Query: 381 DLETD----DLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435
D+ DL++ ++ E ++ I H L + + +DRV V+ G +VE +
Sbjct: 185 DVTVQAQILDLLKE-LQREK-GTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
Query: 436 KN 437
KN
Sbjct: 243 KN 244
Score = 51.0 bits (123), Expect = 8e-07
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 32/108 (29%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPA-----DGTIIIDGVDIRTLG---LHTLR-SRLTII 545
+GIVG +G+GKS L A+ ++ G I+ DG D+ +L L +R + +I
Sbjct: 34 LGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMI 93
Query: 546 PQDPVLFSGTLRLNLDPV----------------GESSDEAIWKALEL 577
QDP + S L+PV G S EA +A+EL
Sbjct: 94 FQDP-MTS------LNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIEL 134
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 64.0 bits (157), Expect = 2e-11
Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 65/246 (26%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+V ++GR GAGK++L + ++ P G II DG DI L H R+RL I
Sbjct: 30 EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE-RARLGI-------- 80
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIF----TEDVKPLIITPFCSNLQRFYVATSRQ 328
VP + IF E+ NL A +
Sbjct: 81 ------------AYVP--------EGRRIFPRLTVEE-----------NLLLGAYARRDK 109
Query: 329 LKRLESVSRSPIYSHF----------GETVTGNVGQRQLICLARALLRKTKILILDEATA 378
+ + +Y F T++G G++Q++ +ARAL+ + K+L+LDE +
Sbjct: 110 EAQERDLEE--VYELFPRLKERRNQRAGTLSG--GEQQMLAIARALMSRPKLLLLDEPSE 165
Query: 379 ----AIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433
I E + I+ + T+L + ++ +DR VL+ G +V + +
Sbjct: 166 GLAPKIVEEIFEAIKELRKEGGM--TILLVEQNARFALEIADRGYVLENGRIVLSGTAAE 223
Query: 434 LMKNKA 439
L+ +
Sbjct: 224 LLADPD 229
Score = 47.8 bits (115), Expect = 4e-06
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 473 AVLSKETLNAGLVGL----SVSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTII 524
+L E L+AG + VS ++ G ++GR GAGK++L + ++ P G II
Sbjct: 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61
Query: 525 IDGVDIRTLGLHTL-RSRLTIIPQ 547
DG DI L H R + +P+
Sbjct: 62 FDGEDITGLPPHERARLGIAYVPE 85
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 62.7 bits (153), Expect = 2e-11
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 340 IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC 399
+ ++ G +G G+RQ + LAR LL+ I++LDE T +D T+ + S I
Sbjct: 91 LRNNLGRRFSG--GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDK 148
Query: 400 TVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
T++ I H L I D++L L+ G ++
Sbjct: 149 TLIWITHHLTGIEHMDKILFLENGKIIM 176
Score = 57.3 bits (139), Expect = 1e-09
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ ++GR+G+GKS+L L ++P G I +DGV + L L S ++++ Q P LF
Sbjct: 31 IALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE-KALSSLISVLNQRPYLFDT 89
Query: 555 TLRLNL 560
TLR NL
Sbjct: 90 TLRNNL 95
Score = 46.2 bits (110), Expect = 8e-06
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 193 WPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
+PE+ + K+ + ++G E + ++GR+G+GKS+L L ++P G I +DGV +
Sbjct: 10 YPEQEQQVLKNLSLELKQG-EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSD 68
Query: 253 LGLHTLRSRLTIIPQ 267
L L S ++++ Q
Sbjct: 69 LE-KALSSLISVLNQ 82
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 62.6 bits (153), Expect = 2e-11
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 341 YSHFGETVTGNV------GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS 394
+ H TV N+ GQ+Q + LARAL +L+LDE T+A+D T +++ ++S
Sbjct: 88 FPHL--TVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKS 145
Query: 395 EFAH--CTVLTIAHRLNTIID-SDRVLVLDKG 423
A TV+ + H L+ +DRV+VL G
Sbjct: 146 LQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
Score = 51.4 bits (124), Expect = 2e-07
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT--LRSRL 542
V L++ V ++G +G+GKS+L + + EP G+I+IDG D+ L LR R+
Sbjct: 19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78
Query: 543 TIIPQDPVLFS 553
++ QD LF
Sbjct: 79 GMVFQDFALFP 89
Score = 45.3 bits (108), Expect = 2e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 264
E+V ++G +G+GKS+L + + EP G+I+IDG D+ L R I
Sbjct: 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 61.4 bits (150), Expect = 4e-11
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR 407
G++Q + AR LL K K + LDEAT+A+D E++D + ++ TV+++ HR
Sbjct: 95 GEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGI--TVISVGHR 147
Score = 34.1 bits (79), Expect = 0.10
Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 19/65 (29%)
Query: 497 IVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552
I G +G GKSS LFR + G I + L +PQ P L
Sbjct: 32 ITGPSGTGKSS----LFRALAGLWPWGSGRIGM-----------PEGEDLLFLPQRPYLP 76
Query: 553 SGTLR 557
GTLR
Sbjct: 77 LGTLR 81
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 62.7 bits (153), Expect = 4e-11
Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 39/245 (15%)
Query: 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH 256
E + K+ + G V I+G TG+GKS L + I+P G I+++G DI L
Sbjct: 11 KEFKLKNVSLEVERGDYFV-ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNL--P 67
Query: 257 TLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS 316
+ ++ +PQ + + P +Y I L + K
Sbjct: 68 PEKRDISYVPQN---------------YALFPHMTVYKNIAYGLKKRKVDKK-------- 104
Query: 317 NLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEA 376
++R + + L ++R P ET++G G++Q + +ARAL+ KIL+LDE
Sbjct: 105 EIERKVLEIAEMLGIDHLLNRKP------ETLSG--GEQQRVAIARALVVNPKILLLDEP 156
Query: 377 TAAIDLETDDLIQS---TIRSEFAHCTVLTIAHRLNTI-IDSDRVLVLDKGLVVEFDSPS 432
+A+D+ T + ++ IR EF TVL + H +D+V ++ G +++ P
Sbjct: 157 FSALDVRTKEKLREELKKIRKEFG-VTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPE 215
Query: 433 VLMKN 437
+ K
Sbjct: 216 EVFKK 220
Score = 44.2 bits (105), Expect = 7e-05
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V L V I+G TG+GKS L + I+P G I+++G DI L + ++
Sbjct: 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN--LPPEKRDISY 75
Query: 545 IPQDPVLF 552
+PQ+ LF
Sbjct: 76 VPQNYALF 83
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 64.9 bits (159), Expect = 6e-11
Identities = 59/218 (27%), Positives = 96/218 (44%), Gaps = 39/218 (17%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAI-DLETDDLIQSTIRSEFAHC--TVLTIAHRL 408
VG++Q + + +AL R ++LILDE TA + E D+L + +R A T++ I H+L
Sbjct: 143 VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE-ILRR-LAAEGKTIIFITHKL 200
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITF 467
++ +DRV VL +G VV + LA L VG +
Sbjct: 201 KEVMAIADRVTVLRRGKVVG--------------TVDPVAETTEEELA-EL-MVGREVVL 244
Query: 468 SAALLAVLSKETL----------NAGLVGL-SVSYAMQ----VGIVGRTGAGKSSLTLAL 512
E + G+ + VS+ ++ VGI G G G+S L A+
Sbjct: 245 RVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAI 304
Query: 513 FRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI--IPQD 548
+ +PA G I+++G D+ R RL + +P+D
Sbjct: 305 SGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPED 342
Score = 44.1 bits (105), Expect = 2e-04
Identities = 62/249 (24%), Positives = 101/249 (40%), Gaps = 49/249 (19%)
Query: 194 PEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
+G KD R G E+VGI G G G+S L A+ + +PA G I+++G D+
Sbjct: 267 DRRGVTAVKDVSFEVRAG-EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325
Query: 254 GLHTLRSRLTI--IPQ------------VLATIFVICYSTPVFIFVIVPVSVLYFFIQVS 299
R RL + +P+ + + + + F F+
Sbjct: 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPF--------SRGGFLDRR 377
Query: 300 LIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLIC 359
I + + LI + F V S+S G GN Q++LI
Sbjct: 378 AI-RKFARELI--------EEFDVRAPSPDAPARSLS--------G----GN--QQKLI- 413
Query: 360 LARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRV 417
LAR L R+ +LI + T +D+ + I + A VL I+ L+ I++ SDR+
Sbjct: 414 LARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRI 473
Query: 418 LVLDKGLVV 426
V+ +G +V
Sbjct: 474 AVIYEGRIV 482
Score = 36.4 bits (85), Expect = 0.042
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
++G E+ ++G GAGKS+L LF + +P G I +DG
Sbjct: 28 KKG-EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDG 65
Score = 35.2 bits (82), Expect = 0.098
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
++G GAGKS+L LF + +P G I +DG
Sbjct: 34 ALLGENGAGKSTLMKILFGLYQPDSGEIRVDG 65
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 63.7 bits (155), Expect = 7e-11
Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 44/240 (18%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ I+G +G+GKS+ L R+IEP G I IDG +I
Sbjct: 20 EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ------------------- 60
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+PV + + + F Q +L + L T L + R+ K L
Sbjct: 61 ------SPVELREVRRKKIGMVFQQFALFPHMTI--LQNTSLGPELLG-WPEQERKEKAL 111
Query: 333 ESVSRS--PIYSH-FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
E + Y H + + ++G G +Q + LARAL + IL++DEA +A+ D LI+
Sbjct: 112 ELLKLVGLEEYEHRYPDELSG--GMQQRVGLARALAAEPDILLMDEAFSAL----DPLIR 165
Query: 390 STIRSEFA------HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+++ E T++ I H L+ I DR++++ G +V+ +P +++N A+ +
Sbjct: 166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
Score = 41.0 bits (96), Expect = 0.001
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
I+G +G+GKS+ L R+IEP G I IDG +I
Sbjct: 24 IMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENI 57
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 63.7 bits (155), Expect = 8e-11
Identities = 55/194 (28%), Positives = 84/194 (43%), Gaps = 42/194 (21%)
Query: 199 VEFKDYKV------RYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
VEF D V REG LVG+VG GAGK++L A+ + P GT+++ G D+
Sbjct: 11 VEFGDTTVLDGVDLSVREG-SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEA 69
Query: 253 LGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT 312
L R+ +PQ SL F DV+ ++
Sbjct: 70 LSARAASRRVASVPQ-----------------------------DTSLSFEFDVRQVVEM 100
Query: 313 PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGE----TVTGNVGQRQLICLARALLRKT 368
+ RF T +E + F + +++G G+RQ + LARAL + T
Sbjct: 101 GRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSG--GERQRVLLARALAQAT 158
Query: 369 KILILDEATAAIDL 382
+L+LDE TA++D+
Sbjct: 159 PVLLLDEPTASLDI 172
Score = 49.5 bits (118), Expect = 3e-06
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V LSV VG+VG GAGK++L A+ + P GT+++ G D+ L R+
Sbjct: 22 VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81
Query: 545 IPQDPVL---FSGTL---------RLNLDPVGESSDEAIWKALELAHLNTFV 584
+PQD L F R D E+ A+ +A+E + F
Sbjct: 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA 133
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 61.9 bits (151), Expect = 1e-10
Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 46/234 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVL 269
E V I+G +GAGKS+L + R++EP+ G+I+++G DI L L LR R+ +I Q
Sbjct: 29 EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHY 88
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVA-TSRQ 328
+I ++VL + L + + L L RF R
Sbjct: 89 N--------------LIERLTVLENVLHGRLGYKPTWRSL--------LGRFSEEDKERA 126
Query: 329 LKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
L LE V + + ++G GQ+Q + +ARAL ++ +++ DE A++D +T +
Sbjct: 127 LSALERVGLADKAYQRADQLSG--GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQV 184
Query: 389 QSTIRSEFAHCTVLTIAHRLNTIID----------SDRVLVLDKGLVVEFDSPS 432
++ + + II+ +DR++ L G +V FD
Sbjct: 185 MDYLKR-------INKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV-FDGAP 230
Score = 45.8 bits (109), Expect = 2e-05
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQD 548
V I+G +GAGKS+L + R++EP+ G+I+++G DI L L LR R+ +I Q
Sbjct: 31 VAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQH 87
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 61.3 bits (149), Expect = 1e-10
Identities = 54/218 (24%), Positives = 95/218 (43%), Gaps = 36/218 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQVL 269
E V +VG +GAGKS+L +++ P GTI ++G D+ L + LR ++ ++ Q
Sbjct: 28 EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQD- 86
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
F + V+ V + V V P I R V + +L
Sbjct: 87 ---FRLLPDRNVYENVAFALEVTG------------VPPREI--------RKRVPAALEL 123
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
L R+ ++G G++Q + +ARA++ ILI DE T +D +T I
Sbjct: 124 VGLSHKHRA-----LPAELSG--GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM 176
Query: 390 STIRSEFAHCTVLTIAHRLNTIID--SDRVLVLDKGLV 425
+ ++ T + +A ++D RV+ L++G +
Sbjct: 177 NLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
Score = 46.2 bits (110), Expect = 1e-05
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSR 541
+ +S+S V +VG +GAGKS+L +++ P GTI ++G D+ L + LR +
Sbjct: 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79
Query: 542 LTIIPQD 548
+ ++ QD
Sbjct: 80 IGVVFQD 86
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 62.0 bits (151), Expect = 1e-10
Identities = 62/281 (22%), Positives = 115/281 (40%), Gaps = 67/281 (23%)
Query: 188 KPKDEWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
K + ++ D + ++G E + I+GR G+GKS++ + ++ P++G + +DG
Sbjct: 13 KYESNEESTEKLALDDVNLEVKKG-EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDG 71
Query: 248 VDIRTLG-LHTLRSRLTII---P--QVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLI 301
+D L +R++ ++ P Q++AT I
Sbjct: 72 LDTSDEENLWDIRNKAGMVFQNPDNQIVAT-----------------------------I 102
Query: 302 FTEDV---------KPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352
EDV P I R + L+ V H ++G
Sbjct: 103 VEEDVAFGPENLGIPPEEIR-------------ERVDESLKKVGMYEYRRHAPHLLSG-- 147
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
GQ+Q + +A L + + +I DE TA +D + +TI+ ++ T++ I H +
Sbjct: 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE 207
Query: 411 IIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
+++DR++V+D G VV +P + K M K GL
Sbjct: 208 AVEADRIIVMDSGKVVMEGTPKEIFKE-----VEMMKKIGL 243
Score = 39.3 bits (92), Expect = 0.004
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 476 SKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG- 534
S E L V L V + I+GR G+GKS++ + ++ P++G + +DG+D
Sbjct: 20 STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN 79
Query: 535 LHTLRSRLTIIPQDP 549
L +R++ ++ Q+P
Sbjct: 80 LWDIRNKAGMVFQNP 94
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 63.5 bits (155), Expect = 1e-10
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ I+G +G+GKS+L + I P G++ +DG D++ T + +PQD LF G
Sbjct: 347 LAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG 406
Query: 555 TLRLNLDPVGESSD-EAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N+ GE++D E I +A +LA ++ + LP + GG L
Sbjct: 407 TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATL 455
Score = 59.7 bits (145), Expect = 2e-09
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDD-LIQSTIRSEFAHCTVLT 403
G T++G GQRQ I LARAL K+++LDE + +D E + L + + TV+
Sbjct: 452 GATLSG--GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVV 509
Query: 404 IAHRLNTIIDSDRVLVLDKGLVVEF 428
I HR + + D++LVL G + F
Sbjct: 510 ITHRPSLLGCVDKILVLQDGRIARF 534
Score = 40.8 bits (96), Expect = 0.002
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E + I+G +G+GKS+L + I P G++ +DG D++ T + +PQ
Sbjct: 345 EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 60.1 bits (147), Expect = 1e-10
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDL----ETDDLIQSTIRSEFAHCTVLTIAHRL 408
G+RQ + LARAL ++ IL+LDE T+ +D+ E +L++ R TV+ + H L
Sbjct: 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARER--GKTVVMVLHDL 158
Query: 409 NTIID-SDRVLVLDKGLVV 426
N +DRV++L G +V
Sbjct: 159 NLAARYADRVILLKDGRIV 177
Score = 59.0 bits (144), Expect = 3e-10
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLA 270
E+VGI+G GAGKS+L L +++P+ G I++DG D+ +L L ++ +PQ L
Sbjct: 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALE 83
Score = 52.8 bits (128), Expect = 5e-08
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 547
VGI+G GAGKS+L L +++P+ G I++DG D+ +L L ++ +PQ
Sbjct: 28 VGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 62.7 bits (153), Expect = 2e-10
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLI---QSTIRSEFAHCTVLTIAHRLN 409
GQ+Q + +ARAL KIL+ DEAT+A+D ET I I E T++ I H +
Sbjct: 145 GQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEME 203
Query: 410 TIID-SDRVLVLDKGLVVE 427
+ DRV VLD+G +VE
Sbjct: 204 VVKRICDRVAVLDQGRLVE 222
Score = 54.6 bits (132), Expect = 5e-08
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQDPVLF 552
GI+G +GAGKS+L + + P G++ +DG D+ L L LR ++ +I Q L
Sbjct: 36 GIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95
Query: 553 S-----GTLRLNLDPVGESSDEAIWKALELAHL 580
S + L+ G E + EL L
Sbjct: 96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLEL 128
Score = 50.3 bits (121), Expect = 1e-06
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQ 267
E+ GI+G +GAGKS+L + + P G++ +DG D+ L L LR ++ +I Q
Sbjct: 33 EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQ 90
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 63.3 bits (155), Expect = 2e-10
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V ++GRTG GKS+L L R +P G I+++G I LR ++++ Q LFS
Sbjct: 369 VALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA 428
Query: 555 TLRLNL---DPVGESSDEAIWKALE 576
TLR NL P +SDEA+ + L+
Sbjct: 429 TLRDNLLLAAP--NASDEALIEVLQ 451
Score = 61.8 bits (151), Expect = 6e-10
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
G+++ + +ARALL +L+LDE T +D ET+ I + + TVL I HRL +
Sbjct: 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE 538
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNK 438
DR+ V+D G ++E + L+ +
Sbjct: 539 QFDRICVMDNGQIIEQGTHQELLAQQ 564
Score = 50.6 bits (122), Expect = 2e-06
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 17/117 (14%)
Query: 165 IVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------LEL- 214
I + RI E E E + ++ + + Y + L++
Sbjct: 308 IASARRINEITEQKPEVTFPTTSTAA---ADQVSLTLNNVSFTYPDQPQPVLKGLSLQIK 364
Query: 215 ----VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
V ++GRTG GKS+L L R +P G I+++G I LR ++++ Q
Sbjct: 365 AGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQ 421
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 63.2 bits (154), Expect = 2e-10
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
G+RQ + +A ALL + ++LI DE T A+D+ I +R + + +L I H L+
Sbjct: 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI 219
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSA 469
+ +DRV V+ G VE + + L + ++ + V L ++
Sbjct: 220 VRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQKLLNSEPSGDPVPLPEP------AS 273
Query: 470 ALLAV------------LSKETLNAGLVGLSVSYAMQ----VGIVGRTGAGKSSLTLALF 513
LL V + K T++ +V ++S+ ++ +G+VG +G+GKS+ LAL
Sbjct: 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALL 333
Query: 514 RIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQDP 549
R+I + G I DG + L L +R R+ ++ QDP
Sbjct: 334 RLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP 371
Score = 59.7 bits (145), Expect = 2e-09
Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 37/223 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVL 269
E +G+VG +G+GKS+ LAL R+I + G I DG + L L +R R+ ++ Q
Sbjct: 313 ETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQD- 370
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
P S L + V I E ++ + P S QR + +
Sbjct: 371 ------------------PNSSLNPRLNVLQIIEEGLR--VHQPTLSAAQR----EQQVI 406
Query: 330 KRLESVSRSPIYSH-FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
+E V P H + +G GQRQ I +ARAL+ K ++ILDE T+++D I
Sbjct: 407 AVMEEVGLDPETRHRYPAEFSG--GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
Query: 389 QSTIRS--EFAHCTVLTIAHRLNTIIDS--DRVLVLDKGLVVE 427
+ ++S + L I+H L+ ++ + +V+VL +G VVE
Sbjct: 465 LALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVE 506
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 60.0 bits (146), Expect = 4e-10
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ+Q + +A L +IL+LDE TA +D + + ++ E T++ + H L
Sbjct: 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKNK 438
+++ +DRV+VLD G ++ P+ + +
Sbjct: 202 VLEYADRVVVLDDGKILADGDPAEIFNDA 230
Score = 51.1 bits (123), Expect = 4e-07
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-LGLHTLRSRLTIIPQDPV-- 550
+V ++G G+GKS+L L +++P G +++DG+D + L LR ++ ++ Q+P
Sbjct: 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQ 91
Query: 551 LFSGTLRLNLD------PVGESS-DEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
LF T+ + + +E + +ALEL L L R +S GG+
Sbjct: 92 LFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGL----EELLDRPPFNLS-GGQ 143
Score = 47.3 bits (113), Expect = 7e-06
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 210 EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-LGLHTLRSRLTIIPQ 267
E E V ++G G+GKS+L L +++P G +++DG+D + L LR ++ ++ Q
Sbjct: 28 EKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQ 86
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 60.3 bits (147), Expect = 4e-10
Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 46/230 (20%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI---- 264
R G E+VG++G GAGK++L + +P+ GT+I G DI L H +RL I
Sbjct: 28 RPG-EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARLGIARTF 85
Query: 265 -IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV 323
I ++ + V+ V + + + R
Sbjct: 86 QITRLFPGLTVL---ENVAVGAHARLGLSGLL---------------------GRPRARK 121
Query: 324 ATSRQLKR----LESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEAT 377
+R LE V + GN+ GQ++ + +ARAL + K+L+LDE
Sbjct: 122 EEREARERARELLEFVG----LGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA 177
Query: 378 AAIDL-ETDDLIQ--STIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423
A ++ ET++L + +R T+L I H + ++ +DR++VL+ G
Sbjct: 178 AGLNPEETEELAELIRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYG 226
Score = 36.0 bits (84), Expect = 0.033
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V L V VG++G GAGK++L + +P+ GT+I G DI L H +RL I
Sbjct: 23 VSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARLGI 81
Query: 545 IP--QDPVLFSG 554
Q LF G
Sbjct: 82 ARTFQITRLFPG 93
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 61.9 bits (151), Expect = 5e-10
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+GI+G +G+GKS+L L I P G++ +DG D+R L + +PQD LF G
Sbjct: 365 LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG 424
Query: 555 TLRLNLDPVGESSD-EAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N+ GE +D E + +A LA ++ + LP + EGG L
Sbjct: 425 TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATL 473
Score = 60.0 bits (146), Expect = 2e-09
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDD-LIQSTIRSEFAHCTVLT 403
G T++G GQRQ I LARAL +++LDE + +D E + L + + ++ TV+
Sbjct: 470 GATLSG--GQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVV 527
Query: 404 IAHRLNTIIDSDRVLVLDKGLVVEFDS 430
IAHR + + D++LVL G + F
Sbjct: 528 IAHRPSALASVDKILVLQDGRIAAFGP 554
Score = 42.3 bits (100), Expect = 7e-04
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR-----TLGLH 256
E +GI+G +G+GKS+L L I P G++ +DG D+R LG H
Sbjct: 363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH 411
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 60.0 bits (146), Expect = 5e-10
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH------CTVLTIAH 406
GQRQ I +ARAL+ + K+LILDE T+A+D+ +Q+ I + T L I+H
Sbjct: 145 GQRQRIAIARALIPEPKLLILDEPTSALDV----SVQAQILNLLLELKKERGLTYLFISH 200
Query: 407 RLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
L + DR+ V+D G +VE L+ +
Sbjct: 201 DLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
Score = 47.6 bits (114), Expect = 7e-06
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 23/120 (19%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR-LTIIPQDPVLFS 553
+GIVG +G+GKS+L L + +P+ G+I++DG + R + ++ QDP
Sbjct: 36 LGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDP---- 91
Query: 554 GTLRLN-LDPVGESSDEA------------IWKALELAHLNTFVSNLPARLQHEVSEGGE 600
LN VG E I + L+ L + R HE+S GG+
Sbjct: 92 -YSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLP---PSFLDRRPHELS-GGQ 146
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
E +GIVG +G+GKS+L L + +P+ G+I++DG + R
Sbjct: 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 59.8 bits (145), Expect = 7e-10
Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 47/228 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E VG++GR+G GKS+L L + +PA GT+ G D+ L R + + + +
Sbjct: 38 ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD----RKQRRAFRRDVQLV 93
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKR- 331
F S + P + I L + S Q R
Sbjct: 94 FQDSPSA------VNPRMTVRQIIGEPLRHLTSLD-----------------ESEQKARI 130
Query: 332 ---LESVS-RSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
L+ V RS ++G GQ Q I +ARAL K K+++LDEA + +D+ +
Sbjct: 131 AELLDMVGLRSEDADKLPRQLSG--GQLQRINIARALAVKPKLIVLDEAVSNLDM----V 184
Query: 388 IQSTI-------RSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427
+Q+ I + F + I H L + RV V+DKG +VE
Sbjct: 185 LQAVILELLRKLQQAFGTAYLF-ITHDLRLVQSFCQRVAVMDKGQIVE 231
Score = 39.8 bits (93), Expect = 0.003
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSR 541
V LS+ VG++GR+G GKS+L L + +PA GT+ G D+ L R
Sbjct: 30 VSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRD 89
Query: 542 LTIIPQD 548
+ ++ QD
Sbjct: 90 VQLVFQD 96
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 59.4 bits (145), Expect = 8e-10
Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 51/237 (21%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+V I+G GAGKS+L AL + P G + ++G + L R ++PQ
Sbjct: 29 EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQ----- 83
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+S+ F P +V E+V + P + + L ++
Sbjct: 84 ----HSSLSF-----PFTV------------EEVVAMGRAPHGLSRAEDDALVAAALAQV 122
Query: 333 ESVSRSPIYSHFGE----TVTGNVGQRQLICLARALLR------KTKILILDEATAAIDL 382
+ +H ++G G++Q + LAR L + + L+LDE T+A+DL
Sbjct: 123 DL-------AHLAGRDYPQLSG--GEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
Query: 383 ETDDLIQSTIRSEFAH---CTVLTIAHRLN-TIIDSDRVLVLDKGLVVEFDSPS-VL 434
+ R + AH V+ + H LN +DR+++L +G +V +P+ VL
Sbjct: 174 AHQHHVLRLAR-QLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
Score = 42.1 bits (100), Expect = 5e-04
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FS 553
V I+G GAGKS+L AL + P G + ++G + L R ++PQ L F
Sbjct: 31 VAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFP 90
Query: 554 GT----LRLNLDPVGESSDE---AIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
T + + P G S E + AL +++L R ++S GGE
Sbjct: 91 FTVEEVVAMGRAPHGLSRAEDDALVAAALAQ----VDLAHLAGRDYPQLS-GGE 139
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 57.8 bits (141), Expect = 8e-10
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTI 411
G +Q + LA+ALL ++LILDE T+ +D E+ +R T+L +H L
Sbjct: 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEA 158
Query: 412 ID-SDRVLVLDKGLV 425
DRV +L+ G +
Sbjct: 159 ERLCDRVAILNNGRI 173
Score = 47.8 bits (115), Expect = 2e-06
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
G++G GAGK++L + +++P G I + G DI+ ++ R+ +P++P L+
Sbjct: 29 YGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPSLYEN 87
Query: 555 -TLRLNLD 561
T+R NL
Sbjct: 88 LTVRENLK 95
Score = 43.5 bits (104), Expect = 6e-05
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E+ G++G GAGK++L + +++P G I + G DI+ ++ R+ +P+
Sbjct: 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPE 80
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 59.4 bits (144), Expect = 1e-09
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD-DLIQS--TIRSEFAHCTVLTIAHRLN 409
GQ+Q + +A A+ + KI+ILDEAT+ +D E +LI++ IR ++ TV++I H L+
Sbjct: 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY-QMTVISITHDLD 202
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVL 434
+ SDRVLV+ G V +P L
Sbjct: 203 EVALSDRVLVMKNGQVESTSTPREL 227
Score = 30.1 bits (68), Expect = 2.7
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
E + I+G G+GKS+ + ++E G IIIDG
Sbjct: 34 EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDG 68
Score = 30.1 bits (68), Expect = 3.5
Identities = 30/104 (28%), Positives = 49/104 (47%), Gaps = 9/104 (8%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP-VLFSGT 555
I+G G+GKS+ + ++E G IIIDG + + +R ++ ++ Q+P F G
Sbjct: 38 IIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA 97
Query: 556 -----LRLNLDPVGESSDEAIWK---ALELAHLNTFVSNLPARL 591
+ L+ G +E + ALEL + F PARL
Sbjct: 98 TVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARL 141
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 59.2 bits (143), Expect = 1e-09
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 30/215 (13%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E +GI+G+ G+GKS+L L L ++ P G +++ G+D S+L I +++ +
Sbjct: 29 EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDF------SKLQGIRKLVGIV 82
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
F P FV V + L F + L + R + R
Sbjct: 83 F----QNPETQFVGRTV-------EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR- 130
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
RSP +T++G GQ Q + LA L + + LI DE T+ +D ++ + I
Sbjct: 131 ---HRSP------KTLSG--GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERI 179
Query: 393 RSEFAHC-TVLTIAHRLNTIIDSDRVLVLDKGLVV 426
+ T++ I H L + D+DR++V+D+G +V
Sbjct: 180 KKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIV 214
Score = 41.1 bits (96), Expect = 0.001
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLT 543
+ L + +GI+G+ G+GKS+L L L ++ P G +++ G+D L +R +
Sbjct: 21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80
Query: 544 IIPQDP 549
I+ Q+P
Sbjct: 81 IVFQNP 86
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 58.1 bits (141), Expect = 1e-09
Identities = 49/219 (22%), Positives = 85/219 (38%), Gaps = 40/219 (18%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ G++G GAGK++ L ++EP G +DG D ++ + +
Sbjct: 32 EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD-------VVKEPA----EARRRL 80
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK-R 331
+ ST ++ + ++ YF Y +L R
Sbjct: 81 GFVSDSTGLYDRLTARENLEYF------------------------AGLYGLKGDELTAR 116
Query: 332 LESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEATAAID-LETDDLI 388
LE ++ + G G RQ + +ARAL+ +L+LDE T +D + T L
Sbjct: 117 LEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176
Query: 389 QSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426
+ + +L H + + DRV+VL +G VV
Sbjct: 177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
Score = 33.5 bits (77), Expect = 0.22
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--------RTLGLHT----LRSRL 542
G++G GAGK++ L ++EP G +DG D+ R LG + L RL
Sbjct: 34 TGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSDSTGLYDRL 93
Query: 543 T 543
T
Sbjct: 94 T 94
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 58.5 bits (142), Expect = 2e-09
Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 41/229 (17%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E++ I+G GAGKS+L AL + P G + ++GV + + L ++PQ
Sbjct: 28 EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQ----- 82
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKR- 331
S+ F F + V +Q+ I P R R +
Sbjct: 83 ----NSSLAFPFTVQEV------VQMGRI------PH-------RSGREPEEDERIAAQA 119
Query: 332 LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKT------KILILDEATAAIDLETD 385
L + S + T++G G++Q + LAR L + + L LDE T+A+D+
Sbjct: 120 LAATDLSGLAGRDYRTLSG--GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQ 177
Query: 386 DLIQSTIRSEFAH--CTVLTIAHRLN-TIIDSDRVLVLDKGLVVEFDSP 431
R + A VL + H LN +DR+++L +G V+ SP
Sbjct: 178 HHTLRLAR-QLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225
Score = 38.9 bits (91), Expect = 0.004
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FS 553
+ I+G GAGKS+L AL + P G + ++GV + + L ++PQ+ L F
Sbjct: 30 LAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89
Query: 554 GT----LRLNLDPVGESS----DEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
T +++ P DE I A T +S L R +S GGE
Sbjct: 90 FTVQEVVQMGRIPHRSGREPEEDERI---AAQALAATDLSGLAGRDYRTLS-GGE 140
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 58.4 bits (142), Expect = 2e-09
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLI---QSTIRSEFAHCTVLTIAHRLN 409
GQ+Q + +ARAL K+L+ DEAT+A+D ET I I E T++ I H +
Sbjct: 144 GQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELG-LTIVLITHEME 202
Query: 410 TIID-SDRVLVLDKGLVVE 427
+ DRV V++KG VVE
Sbjct: 203 VVKRICDRVAVMEKGEVVE 221
Score = 46.8 bits (112), Expect = 1e-05
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE-PADGTIIIDGVDIRTL---GLHTLRS 540
V LSV GI+GR+GAGKS+L + +E P G++++DG D+ L L R
Sbjct: 24 VSLSVPKGEIFGIIGRSGAGKSTL-IRCINGLERPTSGSVLVDGTDLTLLSGKELRKARR 82
Query: 541 RLTIIPQDPVLFS-----GTLRLNLDPVGESSDEAIWKALELAHL 580
R+ +I Q L S + L L+ G E + LEL L
Sbjct: 83 RIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLEL 127
Score = 45.3 bits (108), Expect = 3e-05
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIE-PADGTIIIDGVDIRTL---GLHTLRSRLTIIPQ 267
E+ GI+GR+GAGKS+L + +E P G++++DG D+ L L R R+ +I Q
Sbjct: 32 EIFGIIGRSGAGKSTL-IRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQ 89
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 57.8 bits (140), Expect = 2e-09
Identities = 54/236 (22%), Positives = 92/236 (38%), Gaps = 47/236 (19%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268
EG E+ G++G GAGK++L + ++ P G + IDGVD +R ++ ++
Sbjct: 26 EEG-EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS-FVRRKIGVLF-- 81
Query: 269 LATIFVICYSTPVFIFVIVPVSVLYF--FIQVSLIFTEDVKPLIITPFCSNLQRFYVATS 326
++ + ++ YF +S + +
Sbjct: 82 --------GERGLYARLTARENLKYFARLNGLSRKEIK------------------ARIA 115
Query: 327 RQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDD 386
KRL+ + GE TG +Q + +ARAL+ IL+LDE T+ +D+ T
Sbjct: 116 ELSKRLQ--LLEYLDRRVGEFSTG---MKQKVAIARALVHDPSILVLDEPTSGLDIRT-- 168
Query: 387 LIQSTIRSEFAHC-----TVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436
+ V+ +H + + DRV+VL KG VV S L
Sbjct: 169 --RRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
Score = 38.5 bits (90), Expect = 0.006
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
G++G GAGK++L + ++ P G + IDGVD
Sbjct: 31 TGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDT 66
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 57.1 bits (139), Expect = 3e-09
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC--TVLTIAHRLNT 410
GQ+Q + +A L IL+LDE TA +D + ++ + T++ + H L+
Sbjct: 138 GQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLK-KLKAEGKTIIIVTHDLDL 196
Query: 411 IID-SDRVLVLDKG 423
+++ +DRV+VL+ G
Sbjct: 197 LLELADRVIVLEDG 210
Score = 56.7 bits (138), Expect = 3e-09
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549
V IVG G+GKS+L L ++ P G +++DG D+ L L LR ++ ++ Q+P
Sbjct: 30 VLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNP 84
Score = 54.4 bits (132), Expect = 3e-08
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E V IVG G+GKS+L L ++ P G +++DG D+ L L LR ++ ++ Q
Sbjct: 28 EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQ 82
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 58.4 bits (141), Expect = 3e-09
Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 37/231 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVL 269
++ G++G +GAGKS+L + + P G++I+DG D+ TL L R ++ +I Q
Sbjct: 32 QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQH- 90
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
F + S VF V +P+ + N + + +
Sbjct: 91 ---FNLLSSRTVFGNVALPLEL------------------------DNTPKDEIKR-KVT 122
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
+ L V + + ++G GQ+Q + +ARAL K+L+ DEAT+A+D T I
Sbjct: 123 ELLALVGLGDKHDSYPSNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTQSIL 180
Query: 390 STIR--SEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
++ + T+L I H ++ + D V V+ G ++E + S + +
Sbjct: 181 ELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231
Score = 40.6 bits (95), Expect = 0.002
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSR 541
V L V G++G +GAGKS+L + + P G++I+DG D+ TL L R +
Sbjct: 24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQ 83
Query: 542 LTIIPQDPVLFS-----GTLRLNLDPVGESSDEAIWKALELAHL 580
+ +I Q L S G + L L+ DE K EL L
Sbjct: 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLAL 127
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 59.1 bits (143), Expect = 4e-09
Identities = 96/416 (23%), Positives = 169/416 (40%), Gaps = 70/416 (16%)
Query: 206 VRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA--DGTIIIDGVDIRTLGLH-TLRSRL 262
+ R G E VG+ G GAGKS+L L + DG I G ++ + T R+ +
Sbjct: 22 LEVRPG-ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80
Query: 263 TIIPQVLATIFVICYSTPVFIFVIVP-VSVLYFFIQVSLIF--TEDVKPLIITPFCSNLQ 319
II Q L +VP +SV IF E P + +
Sbjct: 81 VIIHQELT---------------LVPELSVA------ENIFLGNEITLPGGRMAYNAMYL 119
Query: 320 RFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAA 379
R ++ L R + + G+ GQ+QL+ +A+AL ++ ++LILDE +++
Sbjct: 120 R-----AKNLLRELQLDADNVTRPVGDY---GGGQQQLVEIAKALNKQARLLILDEPSSS 171
Query: 380 IDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
+ + +++ IR AH + I+H+LN + D + V+ G V S + ++
Sbjct: 172 LTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231
Query: 438 KASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLA--VLSKETLNAGLVGLSVSYAMQV 495
I M + +G++I + L V++ V S+ +
Sbjct: 232 D--IITMMVGREITSLYPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEIL 289
Query: 496 GIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDG--VDIRTLGLHTLRSRLTIIPQD---- 548
G+ G GAG++ L ALF +G + I+G VDIR +R+ + ++P+D
Sbjct: 290 GVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRAGIAMVPEDRKRH 348
Query: 549 ---PVL-------------FSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLP 588
P+L F +R++ + + I A++ + T LP
Sbjct: 349 GIVPILGVGKNITLSVLKSFCFKMRID----AAAELQIIGSAIQRLKVKTASPFLP 400
Score = 46.4 bits (110), Expect = 3e-05
Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 37/224 (16%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDG--VDIRTLGLHTLRSRLTII 265
R G E++G+ G GAG++ L ALF +G + I+G VDIR +R+ + ++
Sbjct: 284 RRG-EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRAGIAMV 341
Query: 266 PQVLATIFVICYSTPVF-IFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVA 324
P+ ++ P+ + + +SVL F I +I S +QR V
Sbjct: 342 PEDRKRHGIV----PILGVGKNITLSVLKSFCFKMRIDAAAELQIIG----SAIQRLKVK 393
Query: 325 TSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDL-- 382
T+ + +S G +Q LA+ LL ++LILDE T +D+
Sbjct: 394 TASPFLPIGRLSG---------------GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438
Query: 383 --ETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423
E LI + A ++ ++ L ++ SDRVLV+ +G
Sbjct: 439 KYEIYKLINQLAQEGVA---IIVVSSELAEVLGLSDRVLVIGEG 479
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 58.5 bits (142), Expect = 5e-09
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR 407
G++Q + AR LL K K + LDEAT+A+D ET+D + ++ E TV+++ HR
Sbjct: 519 GEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
Score = 33.1 bits (76), Expect = 0.49
Identities = 31/107 (28%), Positives = 40/107 (37%), Gaps = 16/107 (14%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
I G +GAGK+SL AL + G I + S L +PQ P L GTL
Sbjct: 424 ITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTL 472
Query: 557 RLNL---DPVGESSDEAIWKALELAHLNTFVSNLP--ARLQHEVSEG 598
R L + + SD + L L L R +S G
Sbjct: 473 REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGG 519
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 56.5 bits (137), Expect = 7e-09
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRL 408
N G R+ + +ARALL + +L+LDE T +D + I + +R+ +VL H +
Sbjct: 134 NGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLV 193
Query: 409 NTIIDSDRVLVLDKGLVV 426
+ I DR++VL +G V+
Sbjct: 194 DEIEADDRLVVLHRGRVL 211
Score = 33.4 bits (77), Expect = 0.26
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V +V V ++G GAGKS+L L R+ +G I + G D+R L RL +
Sbjct: 20 VSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALA-RLGV 78
Query: 545 IPQDPVLFSGTLRLNL 560
+ Q P TL L+L
Sbjct: 79 VFQQP-----TLDLDL 89
Score = 30.7 bits (70), Expect = 1.7
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
V ++G GAGKS+L L R+ +G I + G D+R
Sbjct: 28 RFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLR 66
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 55.6 bits (135), Expect = 8e-09
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET-DDLIQSTIRSEFAHC-TVLTIAHRLNT 410
GQ+Q I LARA+ I +LD+ +A+D + ++ I + T + + H+L
Sbjct: 131 GQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL 190
Query: 411 IIDSDRVLVLDKG 423
+ +D+++VLD G
Sbjct: 191 LPHADQIVVLDNG 203
Score = 48.6 bits (117), Expect = 2e-06
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVG G+GKSSL AL +E G++ ++ + + Q+P + +G
Sbjct: 34 VAIVGPVGSGKSSLLSALLGELEKLSGSV-------------SVPGSIAYVSQEPWIQNG 80
Query: 555 TLRLNLDPVGESSDEA-IWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+R N+ G+ DE K ++ L + LP E+ E G NL
Sbjct: 81 TIRENI-LFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINL 128
Score = 37.8 bits (89), Expect = 0.007
Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 193 WPEKGEVE---FKDYKVRYREGLELVGIVGRTGAGKSSLTLAL 232
W + KD + +G ELV IVG G+GKSSL AL
Sbjct: 10 WDSGEQETSFTLKDINLEVPKG-ELVAIVGPVGSGKSSLLSAL 51
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 57.1 bits (138), Expect = 1e-08
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 36/229 (15%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276
++G +G GK++L L +P G+I++DG D+ T +P L I ++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV------------TNVPPHLRHINMVF 48
Query: 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVS 336
S +F + V +V + + E R L+ L V
Sbjct: 49 QSYALFPHMTVEENVAFGLKMRKVPRAE-------------------IKPRVLEALRLVQ 89
Query: 337 RSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ---STIR 393
++G GQ+Q + LARAL+ K KIL+LDE +A+D + D +Q TI+
Sbjct: 90 LEEFADRKPHQLSG--GQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147
Query: 394 SEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ V + + SDR+ ++ KG + + +P + + A++F
Sbjct: 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196
Score = 34.0 bits (78), Expect = 0.21
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 14/110 (12%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF---- 552
++G +G GK++L L +P G+I++DG D+ + H LR + ++ Q LF
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH-LRH-INMVFQSYALFPHMT 58
Query: 553 ---SGTLRLNLDPVGESS-DEAIWKALELAHLNTFVSNLPARLQHEVSEG 598
+ L + V + + +AL L L F P H++S G
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP----HQLSGG 104
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 55.6 bits (134), Expect = 1e-08
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 35/170 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E + I G +G GKS+L + +I P GT++ +G D+ TL R +++
Sbjct: 30 EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVS--------- 80
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ-LKR 331
+ Q +F + V+ +I P+ +R A + L R
Sbjct: 81 ---------------------YCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLAR 119
Query: 332 LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID 381
I + ++G G++Q I L R L KIL+LDE T+A+D
Sbjct: 120 FALPDS--ILTKNITELSG--GEKQRIALIRNLQFMPKILLLDEITSALD 165
Score = 51.0 bits (122), Expect = 4e-07
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 489 VSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+S +++ G I G +G GKS+L + +I P GT++ +G D+ TL R +++
Sbjct: 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81
Query: 545 IPQDPVLFSGTLRLNL 560
Q P LF T+ NL
Sbjct: 82 CAQTPALFGDTVEDNL 97
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 57.0 bits (138), Expect = 1e-08
Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 351 NVGQRQLICLARALLRKTKILILDEATAAID-LETDDLIQSTIRSEFAH-CTVLTIAHRL 408
V RQ++ + R L+R ++ILILDE TA++ ET+ L IR A ++ I+H+L
Sbjct: 142 EVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGIVFISHKL 200
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM---AKDAGLA-----WLAVRLE 459
I +DR+ V+ G + + L + I ++ A++ L+ W LE
Sbjct: 201 PEIRQLADRISVMRDGTIALSGKTADL--STDDIIQAITPAAREKSLSASQKLW----LE 254
Query: 460 TVGNLITFSAALLAVLSKETLNA-GLVGLSVS-YAMQ-VGIVGRTGAGKSSLTLALFRII 516
GN AA VL+ E L G +S+ A + +G+ G GAG++ L L+ +
Sbjct: 255 LPGNRRQ-QAAGAPVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR 313
Query: 517 EPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQD 548
G I+++G +I L L L +P+D
Sbjct: 314 PARGGRIMLNGKEINALSTAQRLARGLVYLPED 346
Score = 43.9 bits (104), Expect = 2e-04
Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 38/231 (16%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LR 259
F++ + R G E++G+ G GAG++ L L+ + G I+++G +I L L
Sbjct: 279 FRNISLEVRAG-EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLA 337
Query: 260 SRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLI--ITPFCSN 317
L +P+ Q S ++ + PL + N
Sbjct: 338 RGLVYLPEDR---------------------------QSSGLYLD--APLAWNVCALTHN 368
Query: 318 LQRFYVATSRQLKRLESVSRS-PI-YSHFGETV-TGNVGQRQLICLARALLRKTKILILD 374
+ F++ +R+ LE R+ I ++H + T + G +Q + +A+ L ++LI+D
Sbjct: 369 RRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVD 428
Query: 375 EATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKG 423
E T +D+ + I IRS A + VL I+ L I +DRVLV+ +G
Sbjct: 429 EPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQG 479
Score = 32.3 bits (74), Expect = 0.75
Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 20/74 (27%)
Query: 491 YAMQV-GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLT------ 543
+A +V ++G GAGKS+L + I+ P GT+ I G +RLT
Sbjct: 35 HAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGN---------PCARLTPAKAHQ 85
Query: 544 ----IIPQDPVLFS 553
++PQ+P+LF
Sbjct: 86 LGIYLVPQEPLLFP 99
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 57.1 bits (138), Expect = 2e-08
Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 38/239 (15%)
Query: 324 ATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
A R + +E V S +H ++G G++Q + LAR L ++ + + DE T +D +
Sbjct: 145 AVGRAVDLIEMVQLSHRITHIARDLSG--GEKQRVVLARQLAKEPFLFLADEPTGTLDPQ 202
Query: 384 TDDLIQSTIRS---EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
T L+ + + VLT +H I D SD+ + L+ G + E +P ++
Sbjct: 203 TAKLVHNALEEAVKASGISMVLT-SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVV---- 257
Query: 440 SIFYSMAKDAGLAWLAVRLET---VGNLITFSAALLAVLSKE--TLNAGL------VGLS 488
++F + V E VG I + +SK +++ G+ V L
Sbjct: 258 AVFMEGVSE-------VEKECEVEVGEPII----KVRNVSKRYISVDRGVVKAVDNVSLE 306
Query: 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII----DGVDIRTLGLHTLRSRLT 543
V GIVG +GAGK++L+ + ++EP G + + + VD+ G R R
Sbjct: 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP-DGRGRAK 364
Score = 37.9 bits (88), Expect = 0.014
Identities = 24/84 (28%), Positives = 46/84 (54%), Gaps = 5/84 (5%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI---RSEFAHCTVLTIAHRL 408
G+R + LA+ L+++ +I+ILDE T +D T + +I R E T + ++H +
Sbjct: 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ-TFIIVSHDM 488
Query: 409 NTIID-SDRVLVLDKGLVVEFDSP 431
+ ++D DR ++ G +V+ P
Sbjct: 489 DFVLDVCDRAALMRDGKIVKIGDP 512
Score = 34.0 bits (78), Expect = 0.22
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIII----DGVDIRTLGLHTLRSRLT 263
+EG E+ GIVG +GAGK++L+ + ++EP G + + + VD+ G R R
Sbjct: 308 KEG-EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP-DGRGRAK 364
Score = 32.9 bits (75), Expect = 0.54
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 5/52 (9%)
Query: 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII---EPADGTII 244
G+ K+ EG E++GI+GR+GAGKS L + + R + EP G II
Sbjct: 11 DGKEVLKNISFTIEEG-EVLGILGRSGAGKSVL-MHVLRGMDQYEPTSGRII 60
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 55.5 bits (134), Expect = 2e-08
Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 36/224 (16%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276
IVG G+GKS++ + I + G I + I LR + I+ Q
Sbjct: 40 IVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQ--------- 90
Query: 277 YSTPVFIFV--IVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES 334
P FV IV V F ++ + +++ + S LK+++
Sbjct: 91 --NPDNQFVGSIVKYDVA-FGLENHAVPYDEMHRRV---------------SEALKQVDM 132
Query: 335 VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR- 393
+ R+ + ++G GQ+Q + +A L ++ILDEAT+ +D + + +R
Sbjct: 133 LERA---DYEPNALSG--GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRK 187
Query: 394 -SEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMK 436
+ T+++I H L+ +++D V+V++KG V + +P+ +
Sbjct: 188 VKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231
Score = 35.1 bits (81), Expect = 0.082
Identities = 20/87 (22%), Positives = 34/87 (39%)
Query: 463 NLITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGT 522
++I F S + V ++ IVG G+GKS++ + I + G
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 523 IIIDGVDIRTLGLHTLRSRLTIIPQDP 549
I + I LR + I+ Q+P
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQNP 92
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 56.7 bits (137), Expect = 2e-08
Identities = 85/342 (24%), Positives = 141/342 (41%), Gaps = 70/342 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL--TIIPQVLA 270
E+ ++G GAGKS+L L I EP GTI I+ ++ L H L ++L II Q L+
Sbjct: 32 EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAAQLGIGIIYQELS 90
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
VI ++VL + + T+ V + I + R + L
Sbjct: 91 --------------VIDELTVLEN-LYIGRHLTKKVCGVNIIDWREMRVR----AAMMLL 131
Query: 331 RLESVSRSPIYSHFGETVTGN--VGQRQLICLARALLRKTKILILDEATAAI-DLETDDL 387
R+ + + N + +Q++ +A+ L+ K++I+DE T+++ + E D L
Sbjct: 132 RV-GLKVDL------DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYL 184
Query: 388 --IQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYS 444
I + +R E ++ I+H+L I DR V MK+ +S+
Sbjct: 185 FLIMNQLRKEGT--AIVYISHKLAEIRRICDRYTV---------------MKDGSSVCSG 227
Query: 445 MAKDA---GLAWLAV----------RLETVGNLIT---FSAALLAVLSKETLNAGLVGLS 488
M D + L V E V NL F V S++ + S
Sbjct: 228 MVSDVSNDDIVRLMVGRELQNRFNAMKENVSNLAHETVFEVR--NVTSRDRKKVRDISFS 285
Query: 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
V +G G G+G++ L LF + + A G I ++G DI
Sbjct: 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDI 327
Score = 35.1 bits (81), Expect = 0.10
Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
++G GAGKS+L L I EP GTI I+ ++ L H L ++L I
Sbjct: 36 LLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAAQLGI 82
Score = 30.1 bits (68), Expect = 3.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
+D G E++G G G+G++ L LF + + A G I ++G DI
Sbjct: 280 RDISFSVCRG-EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDI 327
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 55.2 bits (133), Expect = 2e-08
Identities = 65/229 (28%), Positives = 94/229 (41%), Gaps = 45/229 (19%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273
L G++G G+GKS+L L + P GT+ + GVD+ L R+ ++ Q T
Sbjct: 29 LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTA- 87
Query: 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL----QRFYVATSRQL 329
VP++V DV L P S R L
Sbjct: 88 -------------VPLTVR------------DVVALGRIPHRSLWAGDSPHDAAVVDRAL 122
Query: 330 KRLESVSRSPIYSHFGE----TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD 385
R E SH + T++G G+RQ + +ARAL ++ K+L+LDE T +D+
Sbjct: 123 ARTEL-------SHLADRDMSTLSG--GERQRVHVARALAQEPKLLLLDEPTNHLDVRAQ 173
Query: 386 DLIQSTIRSEFAH-CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432
+ +R A TV+ H LN D V+VLD G VV P
Sbjct: 174 LETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPR 222
Score = 37.1 bits (86), Expect = 0.015
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQD 548
G++G G+GKS+L L + P GT+ + GVD+ L R+ ++ QD
Sbjct: 31 GLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQD 83
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 55.3 bits (134), Expect = 2e-08
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQST---IRSEFAHCTVLTIAHRLN 409
GQRQ I +ARAL K+++ DE +A+D+ I + ++ E T L I+H L+
Sbjct: 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFISHDLS 171
Query: 410 TIID-SDRVLVLDKGLVVE 427
+ SDR+ V+ G +VE
Sbjct: 172 VVRYISDRIAVMYLGKIVE 190
Score = 46.1 bits (110), Expect = 2e-05
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
E +G+VG +G GKS+L + + EP G I+ +G DI L
Sbjct: 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL 80
Score = 44.9 bits (107), Expect = 6e-05
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533
V S+ +G+VG +G GKS+L + + EP G I+ +G DI L
Sbjct: 32 VSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL 80
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 55.7 bits (135), Expect = 3e-08
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRL 408
+ GQRQ + LARAL+RK K+ +LDE + +D + L++S I+ E T + + H
Sbjct: 135 SGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194
Query: 409 --NTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ +DR++V++ G + + +P L + A++F
Sbjct: 195 VEAMTL-ADRIVVMNDGRIQQVGTPLELYERPANLF 229
Score = 41.9 bits (99), Expect = 7e-04
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 197 GEVE-FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIR 251
G E KD + +G E V ++G +G GKS+ L R+I EP G I+IDG D+
Sbjct: 14 GSFEVLKDVNLDIEDG-EFVVLLGPSGCGKST----LLRMIAGLEEPTSGEILIDGRDVT 68
Query: 252 TL 253
L
Sbjct: 69 DL 70
Score = 40.7 bits (96), Expect = 0.001
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 495 VGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV 550
V ++G +G GKS+L R+I EP G I+IDG D+ L + + ++ Q+
Sbjct: 32 VVLLGPSGCGKSTL----LRMIAGLEEPTSGEILIDGRDVT--DLPPEKRGIAMVFQNYA 85
Query: 551 LF-SGTLRLN----LDPVGESSDEAIWK---ALELAHLNTFVSNLPARL 591
L+ T+ N L G E + +L L ++ P +L
Sbjct: 86 LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL 134
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 54.1 bits (131), Expect = 3e-08
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ+Q + LARAL R+ +L+LDE +A+D + + ++ ++ T + + H
Sbjct: 134 GQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEE 193
Query: 411 IID-SDRVLVLDKGLVVEFD 429
+ +DR+ V+++G +V+
Sbjct: 194 ALALADRIAVMNEGRIVQVG 213
Score = 43.3 bits (103), Expect = 1e-04
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 19/116 (16%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-- 552
+ ++G +G GK++L + + P G I+IDG D+ + R + ++ QD LF
Sbjct: 29 LALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE--RRNIGMVFQDYALFPH 86
Query: 553 --------SGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
G L+L P E LEL L L R HE+S GG+
Sbjct: 87 LTVAENIAFG-LKLRGVPKAEIRARVRE-LLELVGL----EGLLNRYPHELS-GGQ 135
Score = 41.0 bits (97), Expect = 8e-04
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
E + ++G +G GK++L + + P G I+IDG D+ +
Sbjct: 27 EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV 67
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 55.2 bits (133), Expect = 3e-08
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ+Q + +A L + KI+ILDE+T+ +D + I IR + + TV++I H ++
Sbjct: 147 GQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE 206
Query: 411 IIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
+D+VLVLD G ++ SP + M K+ GL
Sbjct: 207 ANMADQVLVLDDGKLLAQGSPVEIFSKV-----EMLKEIGL 242
Score = 29.4 bits (66), Expect = 5.4
Identities = 15/68 (22%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 489 VSYAMQVG----IVGRTGAGKSSLTLALFRIIEP---ADGTIIIDGVDIRTLGLHTLRSR 541
+S+++ G ++G G+GKS+++ + ++ P + I +DG+ + + +R +
Sbjct: 26 ISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREK 85
Query: 542 LTIIPQDP 549
+ I+ Q+P
Sbjct: 86 VGIVFQNP 93
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 54.5 bits (131), Expect = 3e-08
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 324 ATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
A R ++ L+ V + H ++G GQ+Q + +ARAL + K+++ DE T+A+D E
Sbjct: 123 AEKRAMELLDMVGLADKADHMPAQLSG--GQQQRVAIARALAMRPKVMLFDEVTSALDPE 180
Query: 384 TDDLIQSTIRSEFAH---CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
+ + IR A T+L + H + + +DRV DKG +VE P + +
Sbjct: 181 LVGEVLNVIR-RLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 54.7 bits (131), Expect = 4e-08
Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 36/227 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E V I+G+ G+GKS+ + + E +G + IDG + + LR ++ ++
Sbjct: 34 EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMV------- 86
Query: 273 FVICYSTP--VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
+ P F+ V V + + E +K + N+ F +R+
Sbjct: 87 ----FQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF---KTREPA 139
Query: 331 RLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
RL GQ+Q + +A + + +I+ILDE+T+ +D I
Sbjct: 140 RLSG------------------GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 391 TIRS--EFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLM 435
I E TVL+I H L+ SDR+LV+ G +++ +PS L
Sbjct: 182 VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
Score = 35.5 bits (81), Expect = 0.067
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V S++ V I+G+ G+GKS+ + + E +G + IDG + + LR ++ +
Sbjct: 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGM 85
Query: 545 IPQDP 549
+ Q+P
Sbjct: 86 VFQNP 90
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 51.6 bits (124), Expect = 4e-08
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 38/155 (24%)
Query: 226 SSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQVLATIFVICYSTPVFIF 284
S+L + +++P GTI++DG D L LR R+ ++ Q +F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQ----------DPQLFPE 50
Query: 285 VIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSH- 343
+ V ++ + R A +R + LE V
Sbjct: 51 LTVRENLFFG------------------------LRDKEADARAEEALERVGLPDFLDRE 86
Query: 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATA 378
T++G GQ+Q + +ARALL+K K+L+LDE TA
Sbjct: 87 PVGTLSG--GQKQRVAIARALLKKPKLLLLDEPTA 119
Score = 46.2 bits (110), Expect = 3e-06
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 506 SSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQDPVLF-SGTLRLNLDPV 563
S+L + +++P GTI++DG D L LR R+ ++ QDP LF T+R NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 564 G--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
+ +D +ALE L F+ P +S GG+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPV---GTLS-GGQ 95
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 54.3 bits (131), Expect = 6e-08
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
GQ+Q + +A L + I+ILDEAT+ +D + T+R E TVL+I H L+
Sbjct: 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203
Query: 411 IIDSDRVLVLDKGLVVEFDSPS 432
+DRV+V++KG ++E +P
Sbjct: 204 AAQADRVIVMNKGEILEEGTPE 225
Score = 38.8 bits (91), Expect = 0.005
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 9/116 (7%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V SV V IVG G+GKS+L L ++ P GTI + G+ + + +R ++ +
Sbjct: 26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGM 85
Query: 545 IPQDP-VLFSGT-----LRLNLDPVGESSDEAIWK---ALELAHLNTFVSNLPARL 591
+ Q+P F G + L+ +G +E + + AL + F++ P RL
Sbjct: 86 VFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRL 141
Score = 36.1 bits (84), Expect = 0.032
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 192 EWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
+P+ KD EG E V IVG G+GKS+L L ++ P GTI + G
Sbjct: 14 RYPDAATYALKDVSFSVYEG-EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGG 68
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 55.2 bits (133), Expect = 6e-08
Identities = 64/221 (28%), Positives = 99/221 (44%), Gaps = 33/221 (14%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E + +VG +G+GKS+ AL R++E G II +G I TL +L + + + I
Sbjct: 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS----PGKLQALRRDIQFI 406
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKR 331
F Y+ SL + V I+ P L A +R
Sbjct: 407 FQDPYA--------------------SLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWL 446
Query: 332 LESVSRSPIYS-HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
LE V P ++ + +G GQRQ IC+ARAL K++I DEA +A+D+ I +
Sbjct: 447 LERVGLLPEHAWRYPHEFSG--GQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504
Query: 391 ---TIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427
++ +F L I+H + + S RV V+ G +VE
Sbjct: 505 LLLDLQRDFG-IAYLFISHDMAVVERISHRVAVMYLGQIVE 544
Score = 50.2 bits (120), Expect = 2e-06
Identities = 65/229 (28%), Positives = 100/229 (43%), Gaps = 36/229 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI--IPQVLA 270
E + IVG +G+GKS LAL R++E A G + D + +R RSR I Q A
Sbjct: 43 ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRR------RSRQVIELSEQSAA 96
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR--- 327
+ + + IF P++ L V E + R + SR
Sbjct: 97 QMRHVRGADMAMIFQ-EPMTSLNPVFTVGEQIAESI-------------RLHQGASREEA 142
Query: 328 --QLKRLESVSRSP----IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID 381
+ KR+ R P I S + ++G G RQ + +A AL + +LI DE T A+D
Sbjct: 143 MVEAKRMLDQVRIPEAQTILSRYPHQLSG--GMRQRVMIAMALSCRPAVLIADEPTTALD 200
Query: 382 LETDDLIQSTIR--SEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427
+ I I+ + V+ I H + + + +DRVLV+ +G VE
Sbjct: 201 VTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQDP 549
+VG +G+GKS+ AL R++E G II +G I TL L LR + I QDP
Sbjct: 355 LVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410
Score = 36.0 bits (83), Expect = 0.066
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 4/47 (8%)
Query: 489 VSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531
+S+++Q G IVG +G+GKS LAL R++E A G + D + +R
Sbjct: 35 LSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLR 81
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 53.8 bits (130), Expect = 1e-07
Identities = 59/238 (24%), Positives = 94/238 (39%), Gaps = 52/238 (21%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR---TLGLHTLRSRLTIIPQVLATIF 273
+VG +G GKS+L L I P G + G D+ LR ++ I+ Q
Sbjct: 46 VVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQN----- 100
Query: 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLE 333
P L +V I E PL+I S +R + L +
Sbjct: 101 --------------PYGSLNPRKKVGQILEE---PLLINTSLSAAER----REKALAMMA 139
Query: 334 SVS-RSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
V R Y + +G GQRQ I +ARAL+ +++ DE +A+D+ +Q+ +
Sbjct: 140 KVGLRPEHYDRYPHMFSG--GQRQRIAIARALMLDPDVVVADEPVSALDVS----VQAQV 193
Query: 393 RSEFA------HCTVLTIAHRLNTI--IDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ + + I+H L+ + I +D V+V+ G VE K IF
Sbjct: 194 LNLMMDLQQELGLSYVFISHDLSVVEHI-ADEVMVMYLGRCVE-------KGTKEQIF 243
Score = 41.9 bits (99), Expect = 7e-04
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 489 VSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR---TLGLHTLRSR 541
VS+ ++ G +VG +G GKS+L L I P G + G D+ LR +
Sbjct: 34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQK 93
Query: 542 LTIIPQDP 549
+ I+ Q+P
Sbjct: 94 IQIVFQNP 101
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 53.3 bits (128), Expect = 1e-07
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 47/240 (19%)
Query: 207 RYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 266
REG + + I+G G+GKS+L L +IEP G I+I+ L R I
Sbjct: 35 TLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILIND---HPLHFGDYSFRSKRIR 90
Query: 267 QVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS 326
+ P + L +++ I PL + QR
Sbjct: 91 MIFQD----------------PNTSLNPRLRIGQILDF---PLRLNTDLEPEQR----RK 127
Query: 327 RQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDD 386
+ + L V P ++++ + GQ+Q + LARAL+ + KI+I DEA A++D+
Sbjct: 128 QIFETLRMVGLLPDHANYYPHMLA-PGQKQRVALARALILRPKIIIADEALASLDM---- 182
Query: 387 LIQSTIRSEFAHCTV----------LTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435
++RS+ + + + + + I SD+VLV+ +G VVE S + ++
Sbjct: 183 ----SMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
Score = 39.8 bits (93), Expect = 0.002
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP----- 549
+ I+G G+GKS+L L +IEP G I+I+ + R+ +I QDP
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLN 101
Query: 550 ------VLFSGTLRLNLDPVGESSDEAIWKALELAHL 580
+ LRLN D E + I++ L + L
Sbjct: 102 PRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL 138
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 53.9 bits (130), Expect = 1e-07
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQRQ + LARAL + K+L+LDE A+D + ++ +R + T + + H
Sbjct: 141 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEE 200
Query: 411 IID-SDRVLVLDKGLVVEFDSP 431
++ +DRV+VL++G + + P
Sbjct: 201 ALELADRVVVLNQGRIEQVGPP 222
Score = 31.6 bits (72), Expect = 1.2
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
D + + G ELV ++G +GAGKS+L + + P G I ++G
Sbjct: 16 GALDDISLDIKSG-ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNG 63
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 52.6 bits (127), Expect = 1e-07
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V L V+ VG++G GAGK++ + ++ P G I++D DI L +H R+RL I
Sbjct: 23 VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH-KRARLGI 81
Query: 545 --IPQDPVLFSG-TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQH 593
+PQ+ +F T+ N+ V E ++ + KA L+ + + H
Sbjct: 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF--HITH 131
Score = 48.4 bits (116), Expect = 3e-06
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 34/172 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI--IPQVLA 270
E+VG++G GAGK++ + ++ P G I++D DI L +H R+RL I +PQ A
Sbjct: 31 EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH-KRARLGIGYLPQE-A 88
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL-QRFYVATSRQL 329
+IF ++V + V I +D+K L + F
Sbjct: 89 SIF-------------RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF-------- 127
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID 381
+ + S YS G G+R+ + +ARAL K ++LDE A +D
Sbjct: 128 -HITHLRDSKAYSLSG-------GERRRVEIARALAANPKFILLDEPFAGVD 171
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 52.3 bits (125), Expect = 1e-07
Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 51/226 (22%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
+L IVG+ G GKSSL LA+ ++ +G + + RSR
Sbjct: 28 QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR---------NR 78
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII--TPFCSNLQRFYVATSRQLK 330
+ + Y+ Q + V+ I +PF N QR+ T
Sbjct: 79 YSVAYAA-----------------QKPWLLNATVEENITFGSPF--NKQRYKAVT----- 114
Query: 331 RLESVSRSP---IYSHFGETVTG------NVGQRQLICLARALLRKTKILILDEATAAID 381
++ S P + +T G + GQRQ IC+ARAL + T I+ LD+ +A+D
Sbjct: 115 --DACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172
Query: 382 LE-TDDLIQSTIRSEFAH---CTVLTIAHRLNTIIDSDRVLVLDKG 423
+ +D L+Q I +F T++ + H+L + +D ++ + G
Sbjct: 173 IHLSDHLMQEGIL-KFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
Score = 33.8 bits (77), Expect = 0.15
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 6/111 (5%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR----LTIIPQDPVLF 552
IVG+ G GKSSL LA+ ++ +G + + RSR + Q P L
Sbjct: 32 IVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLL 91
Query: 553 SGTLRLNLDPVGESSDEAIWKAL-ELAHLNTFVSNLPARLQHEVSEGGENL 602
+ T+ N+ G ++ +KA+ + L + LP Q E+ E G NL
Sbjct: 92 NATVEENI-TFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINL 141
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 52.2 bits (126), Expect = 2e-07
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTI 411
GQ+Q +CLARAL + ++L+LDE T+A+D + I+ I E T++ + H +
Sbjct: 145 GQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIA-ELKKEYTIVIVTHNMQQA 203
Query: 412 ID-SDRVLVLDKGLVVEFDSPSVL 434
+DR L G +VEF +
Sbjct: 204 ARVADRTAFLLNGRLVEFGPTEQI 227
Score = 51.0 bits (123), Expect = 4e-07
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 493 MQVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTLGLH--TLRSRLTII 545
++G +G GKS+L L R+ + P +G +++DG DI L + LR R+ ++
Sbjct: 27 EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMV 86
Query: 546 PQDPVLFSGTLRLNLD----PVGESS----DEAIWKALELAHL 580
Q P F G++ N+ G DE + +AL A L
Sbjct: 87 FQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAAL 129
Score = 40.6 bits (96), Expect = 9e-04
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTLGLHTLRSRLTI 264
E+ ++G +G GKS+L L R+ + P +G +++DG DI L + L R +
Sbjct: 27 EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRV 83
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 52.8 bits (126), Expect = 2e-07
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+QL+CLAR L ++L+LDE T+A+D T + I+ IRS TV+ + H L
Sbjct: 167 GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAA 226
Query: 413 D-SDRVLVLDKGLVVE-------FDSP 431
SDR + G +VE F SP
Sbjct: 227 RISDRAALFFDGRLVEEGPTEQLFSSP 253
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 52.1 bits (126), Expect = 2e-07
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
G ++ + LARAL ++L+ DE TA +D DDLI+S + T + + H L
Sbjct: 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL--GLTSIMVTHDL 197
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMK 436
+T +DR+ VL G +V +P L
Sbjct: 198 DTAFAIADRIAVLYDGKIVAEGTPEELRA 226
Score = 45.6 bits (109), Expect = 2e-05
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQDPVL 551
+ I+G +G+GKS+L + ++ P G ++IDG DI L L+ LR R+ ++ Q L
Sbjct: 29 LAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGAL 88
Query: 552 FS 553
F
Sbjct: 89 FD 90
Score = 42.1 bits (100), Expect = 3e-04
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 259
E++ I+G +G+GKS+L + ++ P G ++IDG DI L L
Sbjct: 27 EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 51.5 bits (124), Expect = 2e-07
Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 55/225 (24%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---------LRSRLT 263
E+ G++G GAGK++ + II P G ++ DG + + L ++
Sbjct: 27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMK 86
Query: 264 IIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV 323
+I Q L + Q+ + E+ + I L+R +
Sbjct: 87 VIDQ------------------------LVYLAQLKGLKKEEARRRID----EWLERLEL 118
Query: 324 ATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
+ KR+E +S+ G +Q + A++ ++LILDE + +D
Sbjct: 119 -SEYANKRVEELSK---------------GNQQKVQFIAAVIHDPELLILDEPFSGLDPV 162
Query: 384 TDDLIQSTIRS-EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426
+L++ IR A TV+ H++ + + DRVL+L+KG V
Sbjct: 163 NVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207
Score = 38.4 bits (90), Expect = 0.006
Identities = 14/43 (32%), Positives = 22/43 (51%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
+ SV G++G GAGK++ + II P G ++ DG
Sbjct: 19 ISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 52.1 bits (125), Expect = 2e-07
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARA+ K +L++DE +A+D ++I++ I+ + T++ + H +
Sbjct: 153 GQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAK 212
Query: 413 D-SDRVLVLDKGLVVEFDSPSVLMKNKAS 440
SDRV G +VE+++ + KN S
Sbjct: 213 KVSDRVAFFQSGRIVEYNTTQEIFKNPQS 241
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 51.7 bits (125), Expect = 2e-07
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDL-ETDDLIQ--STIRSEFAHCTVLTIAHRLN 409
GQ++ + +ARAL K+L+LDE A ++ ET++L + +R TVL + H ++
Sbjct: 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER--GITVLLVEHDMD 204
Query: 410 TIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
++ +DRV VLD+G V+ +P + N
Sbjct: 205 VVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235
Score = 39.0 bits (92), Expect = 0.004
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI---- 264
R G E+ G++G GAGK++L + + P G+++ DG DI L H +RL I
Sbjct: 24 RPG-EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH-EIARLGIGRTF 81
Query: 265 -IPQVL 269
IP++
Sbjct: 82 QIPRLF 87
Score = 37.0 bits (87), Expect = 0.015
Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP--QDPVLF 552
G++G GAGK++L + + P G+++ DG DI L H +RL I Q P LF
Sbjct: 29 HGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH-EIARLGIGRTFQIPRLF 87
Query: 553 SG-TLRLNL 560
T+ N+
Sbjct: 88 PELTVLENV 96
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 51.7 bits (124), Expect = 3e-07
Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 49/231 (21%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRS-RLTIIPQ 267
REG L I+G G+GKS+L L +IEP G ++ID + G ++ RS R+ +I Q
Sbjct: 37 REGQTL-AIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYRSQRIRMIFQ 94
Query: 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR 327
+T + P + + L D++P ++ + T R
Sbjct: 95 DPST-------------SLNPRQRISQILDFPLRLNTDLEP-------EQREKQIIETLR 134
Query: 328 QLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
Q+ L + Y H GQ+Q + LARAL+ + K++I DEA A++D+
Sbjct: 135 QVGLLPD--HASYYPHMLAP-----GQKQRLGLARALILRPKVIIADEALASLDM----- 182
Query: 388 IQSTIRSEFAHCTV-LTIAHRLNTII----------DSDRVLVLDKGLVVE 427
++RS+ + + L ++ I SD+VLV+ +G VVE
Sbjct: 183 ---SMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230
Score = 45.9 bits (109), Expect = 2e-05
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 17/104 (16%)
Query: 488 SVSYAMQ----VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRS-RL 542
+S+ ++ + I+G G+GKS+L L +IEP G ++ID + G ++ RS R+
Sbjct: 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYRSQRI 89
Query: 543 TIIPQDPV-----------LFSGTLRLNLDPVGESSDEAIWKAL 575
+I QDP + LRLN D E ++ I + L
Sbjct: 90 RMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETL 133
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 50.8 bits (122), Expect = 4e-07
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 38/220 (17%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ GI G +GAGKS+L + + +P GTI+++G L R ++ + PQ
Sbjct: 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTV-----LFDSRKKINLPPQQRK-- 76
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII--TPFCSNL-QRFYVATSRQL 329
+ F Q +L +V+ + N R V L
Sbjct: 77 ------------------IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDL 118
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
L+ + G G++Q + LARAL + ++L+LDE +A+D +
Sbjct: 119 LGLDHLLNRYPAQLSG-------GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL 171
Query: 390 STIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426
++ + V+ + H L+ +DR++V++ G +
Sbjct: 172 PELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
Score = 32.7 bits (75), Expect = 0.41
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 528
GI G +GAGKS+L + + +P GTI+++G
Sbjct: 26 TGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT 59
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 51.0 bits (122), Expect = 5e-07
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQRQ + LARAL + ++L+LDE A+D + ++S +R + H T + + H
Sbjct: 134 GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE 193
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
++ +DR++V+ G + + SP + + A+ F
Sbjct: 194 AMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
Score = 34.0 bits (78), Expect = 0.16
Identities = 29/118 (24%), Positives = 48/118 (40%), Gaps = 16/118 (13%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI-------RTLGL-- 535
V L V V ++G +G+GKS+L + + +P G I ++G D R +G
Sbjct: 19 VNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVF 78
Query: 536 --HTLRSRLTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARL 591
+ L LT+ +D + F +R + + LEL L P +L
Sbjct: 79 QHYALFKHLTV--RDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPNQL 131
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 274
Score = 51.1 bits (123), Expect = 5e-07
Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 6/117 (5%)
Query: 21 ILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTITVFFYG 80
IL + +GR + S+L + + + + +
Sbjct: 9 ILAGATALVFPLLLGRFLDSLIDGNGDERSSL------ISLAILLIAVGVLQGLLLQGSF 62
Query: 81 FVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLSV 137
++ KRL LL+ +L FFDT VG + SR ++DV+ + + L +
Sbjct: 63 YLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKL 119
Score = 50.4 bits (121), Expect = 1e-06
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 6 SIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFS 65
R K L +LR IL MSFFDT VG + SR + DV + L L + L +
Sbjct: 69 GQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQSLAT 128
Query: 66 VLYLMPVTITVFFYGFVISLGTLFA 90
V+ I +F+YG+ ++L L
Sbjct: 129 VVGGF---IVMFYYGWKLTLVLLAI 150
Score = 34.2 bits (79), Expect = 0.17
Identities = 19/97 (19%), Positives = 39/97 (40%), Gaps = 9/97 (9%)
Query: 257 TLRSRLTI-IPQVLATI--FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP 313
L SRLT + ++ + + + + V + + Y+ +++L+ L I P
Sbjct: 99 ELTSRLTNDVSKIRDGLGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVL------LAILP 152
Query: 314 FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350
L R+L R E + + S E+++G
Sbjct: 153 LLILLSAVLAKKLRKLNRKEQKAYAKAGSVAEESLSG 189
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 50.5 bits (122), Expect = 5e-07
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI--IPQDPVLF 552
V ++GR GAGK++L + ++ P G+I DG DI L H R+R I +P+ +F
Sbjct: 29 VALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RARAGIGYVPEGRRIF 87
Query: 553 SG-TLRLNL 560
T+ NL
Sbjct: 88 PELTVEENL 96
Score = 49.4 bits (119), Expect = 1e-06
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI--IP 266
EG E+V ++GR GAGK++L + ++ P G+I DG DI L H R+R I +P
Sbjct: 24 PEG-EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RARAGIGYVP 81
Query: 267 Q 267
+
Sbjct: 82 E 82
Score = 44.7 bits (107), Expect = 5e-05
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATA----AIDLETDDLIQSTIRSEFAHCTVLTIAHRL 408
G++Q++ +ARAL+ + K+L+LDE + I E + I+ +R E T+L +
Sbjct: 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIR-ELRDEGV--TILLVEQNA 192
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
++ +DR VL++G VV + + L+ +
Sbjct: 193 RFALEIADRAYVLERGRVVLEGTAAELLAD 222
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 50.8 bits (122), Expect = 5e-07
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQRQ + LAR L+R+ IL+LDE +A+D E L+ S + E T+L + H
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALV-SQLCDE-RKMTLLMVTHHP 190
Query: 409 NTIIDS-DRVLVLDKGLVVEFDS 430
DRV+ LD G + S
Sbjct: 191 EDAARIADRVVFLDNGRIAAQGS 213
Score = 36.2 bits (84), Expect = 0.033
Identities = 19/43 (44%), Positives = 26/43 (60%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 529
L+V V I+G +GAGKS+L + PA G I+I+GVD
Sbjct: 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVD 62
Score = 35.4 bits (82), Expect = 0.059
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
E+V I+G +GAGKS+L + PA G I+I+GVD
Sbjct: 26 EIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVD 62
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 51.1 bits (123), Expect = 6e-07
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ+Q + +A L +I+I DE+T+ +D + I+ + + T+++I H ++
Sbjct: 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE 205
Query: 411 IIDSDRVLVLDKGLVVEFDSPSVLMKNKASI 441
I +D+V+V +G ++ P ++ NK +
Sbjct: 206 AILADKVIVFSEGKLIAQGKPKEILNNKEIL 236
Score = 47.7 bits (114), Expect = 7e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549
V I+G G+GKS+++ L +++P G I IDG+ I L +R ++ II Q+P
Sbjct: 38 VAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNP 92
Score = 45.4 bits (108), Expect = 3e-05
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E V I+G G+GKS+++ L +++P G I IDG+ I L +R ++ II Q
Sbjct: 36 EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQ 90
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 50.5 bits (121), Expect = 6e-07
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 488 SVSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLT 543
++S++++ G I G +G GKS+L + +I P GT++ +G DI TL R +++
Sbjct: 25 NISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84
Query: 544 IIPQDPVLFSGTLRLNL 560
Q P LF T+ NL
Sbjct: 85 YCAQTPTLFGDTVYDNL 101
Score = 50.1 bits (120), Expect = 8e-07
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 63/220 (28%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276
I G +G GKS+L + +I P GT++ +G DI TL R +++ C
Sbjct: 38 ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS-----------YC 86
Query: 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP------------FCSNLQRFYVA 324
TP +F + V +I P F +L+RF +
Sbjct: 87 AQTPT-------------------LFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP 127
Query: 325 TSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID--- 381
+ K + +S G++Q I L R L K+L+LDE T+A+D
Sbjct: 128 DTILTKNIAELSG---------------GEKQRISLIRNLQFMPKVLLLDEITSALDESN 172
Query: 382 -LETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL 420
+++I +R + + VL + H + I +D+V+ L
Sbjct: 173 KHNVNEIIHRYVREQ--NIAVLWVTHDKDEINHADKVITL 210
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 50.6 bits (121), Expect = 9e-07
Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 49/237 (20%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR----TLGLHTLRSRLTIIPQVLA 270
V +VG TG+GKS+L +++P+ GTI I G I L LR +
Sbjct: 36 VALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKK--------- 86
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV-KPLIITP--FCSNLQRFYVATSR 327
VS+++ F + L F V K + P F + +
Sbjct: 87 ------------------VSLVFQFPEAQL-FENTVLKDVEFGPKNFGFSEDEAKEKALK 127
Query: 328 QLKRL----ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
LK++ + +S+SP ++G GQ + + +A + + +IL LDE A +D E
Sbjct: 128 WLKKVGLSEDLISKSPF------ELSG--GQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179
Query: 384 T-DDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNK 438
+++Q + A TV+ + H ++ + + +D VLVL+ G +++ SP + +K
Sbjct: 180 GRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
Score = 37.5 bits (87), Expect = 0.014
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 16/95 (16%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR----TLGLHTLRSRLTIIPQDP- 549
V +VG TG+GKS+L +++P+ GTI I G I L LR +++++ Q P
Sbjct: 36 VALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPE 95
Query: 550 -VLFSGTL-------RLNLDPVGESSDEAIWKALE 576
LF T+ N G S DEA KAL+
Sbjct: 96 AQLFENTVLKDVEFGPKNF---GFSEDEAKEKALK 127
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 49.5 bits (118), Expect = 1e-06
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 40/218 (18%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+V I+G +GAGKS+L + IEPA G+I ++ GL +
Sbjct: 25 EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQR------------ 70
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
PVS+L F + +L V+ I L+ + Q +++
Sbjct: 71 ---------------PVSML--FQENNLFAHLTVRQNIGLGLHPGLK----LNAEQQEKV 109
Query: 333 ESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEATAAID--LETDDLI 388
++ + + + + + GQRQ + LAR L+R IL+LDE +A+D L + L
Sbjct: 110 VDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLA 169
Query: 389 QSTIRSEFAHCTVLTIAHRLNTIIDS-DRVLVLDKGLV 425
T+L + H L+ ++ V+ +G +
Sbjct: 170 LVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
Score = 41.0 bits (96), Expect = 6e-04
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
L+V+ V I+G +GAGKS+L + IEPA G+I ++ GL + ++++
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSMLF 76
Query: 547 QDPVLFSG-TLRLNL 560
Q+ LF+ T+R N+
Sbjct: 77 QENNLFAHLTVRQNI 91
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 49.2 bits (118), Expect = 1e-06
Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 52/205 (25%)
Query: 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL 255
+V D + +G ++ I+G +G+GKS+L + + + G + ++G + L
Sbjct: 9 GDKVILDDLNLTIEKG-KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPL-- 65
Query: 256 HTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVK-----PLI 310
+ + L Y F +LI E V+ L
Sbjct: 66 -NSKKASKFRREKLG----------------------YLFQNFALIENETVEENLDLGLK 102
Query: 311 ITPFCSNLQRFYVATSRQLKR--LESVSRS-----PIYSHFGETVTGNVGQRQLICLARA 363
++ R+ K+ LE V + IY G G++Q + LARA
Sbjct: 103 -------YKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSG-------GEQQRVALARA 148
Query: 364 LLRKTKILILDEATAAIDLETDDLI 388
+L+ +++ DE T ++D + D +
Sbjct: 149 ILKPPPLILADEPTGSLDPKNRDEV 173
Score = 31.8 bits (73), Expect = 0.62
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG 534
L++ I+G +G+GKS+L + + + G + ++G + L
Sbjct: 19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLN 66
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 50.5 bits (121), Expect = 1e-06
Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 42/238 (17%)
Query: 210 EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269
G + I GR+G+GK++L + + P +G I+++G L R + + P+
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRT-----LFDSRKGIFLPPEKR 75
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQ---RFYVATS 326
+ Y F + L V+ NL+ + +
Sbjct: 76 R--------------------IGYVFQEARLFPHLSVR--------GNLRYGMKRARPSE 107
Query: 327 RQLKRLESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEATAAIDLET 384
R++ E V H + G + G++Q + + RALL ++L++DE AA+D
Sbjct: 108 RRI-SFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPR 166
Query: 385 DDLIQSTIRSEFAH--CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
I + A +L ++H L ++ +DRV+VL+ G V + + +
Sbjct: 167 KYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
Score = 38.2 bits (89), Expect = 0.009
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 21/119 (17%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI----RTLGLHTLRSRLTIIPQDPV 550
I GR+G+GK++L + + P +G I+++G + + + L + R+ + Q+
Sbjct: 26 TAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR 85
Query: 551 LFSG-TLRLNLD--------PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
LF ++R NL S E + + L + HL + LP RL GGE
Sbjct: 86 LFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHL---LGRLPGRLS-----GGE 136
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 49.5 bits (118), Expect = 1e-06
Identities = 63/250 (25%), Positives = 112/250 (44%), Gaps = 42/250 (16%)
Query: 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL 255
KG +D + G E+VG++G GAGK++ + I+ G IIID DI L L
Sbjct: 14 KGRRVVEDVSLTVNSG-EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPL 72
Query: 256 HTLRSRLTI--IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP 313
H R+R I +PQ A+IF +SV Y + L +D+
Sbjct: 73 HA-RARRGIGYLPQE-ASIF-------------RRLSV-YDNLMAVLQIRDDL------- 109
Query: 314 FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILIL 373
S QR R + +E + G++++G G+R+ + +ARAL K ++L
Sbjct: 110 --SAEQR----EDRANELMEEFHIEHLRDSMGQSLSG--GERRRVEIARALAANPKFILL 161
Query: 374 DEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428
DE A +D ++ +I+ S VL H + + +R ++ +G ++
Sbjct: 162 DEPFAGVDPISVIDIKRIIEHLRDSGLG---VLITDHNVRETLAVCERAYIVSQGHLIAH 218
Query: 429 DSPSVLMKNK 438
+P+ +++++
Sbjct: 219 GTPTEILQDE 228
Score = 42.2 bits (99), Expect = 3e-04
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 464 LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI 523
+ T +A LA K V L+V+ VG++G GAGK++ + I+ G I
Sbjct: 1 MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60
Query: 524 IIDGVDIRTLGLHTLRSRLTI--IPQDPVLF 552
IID DI L LH R+R I +PQ+ +F
Sbjct: 61 IIDDEDISLLPLHA-RARRGIGYLPQEASIF 90
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 48.8 bits (117), Expect = 1e-06
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP--VLF 552
+ + G+ GAGK++L L +I+ + G+I+++G I R + + QD LF
Sbjct: 29 IALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI---KAKERRKSIGYVMQDVDYQLF 85
Query: 553 SGT----LRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEG 598
+ + L L L + + E L+ L P +S G
Sbjct: 86 TDSVREELLLGLKELDAGN-EQAETVLKDLDLYALKERHP----LSLSGG 130
Score = 41.5 bits (98), Expect = 5e-04
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTI 411
GQ+Q + +A ALL +LI DE T+ +D + + + IR A V+ I H +
Sbjct: 130 GQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFL 189
Query: 412 ID-SDRVLVLDKGLVV 426
DRVL+L G +V
Sbjct: 190 AKVCDRVLLLANGAIV 205
Score = 41.5 bits (98), Expect = 5e-04
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
D + G E++ + G+ GAGK++L L +I+ + G+I+++G I
Sbjct: 17 DDLSLDLYAG-EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI 64
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 50.0 bits (120), Expect = 1e-06
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ---STIRSEFAHCTVLTIAHRLN 409
GQ+Q + +ARAL IL++DE A+D T +Q ++ E T++ + H ++
Sbjct: 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDID 197
Query: 410 TIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ +DR+ V+D G +V++D+P ++ N A+ F
Sbjct: 198 EALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231
Score = 46.9 bits (112), Expect = 2e-05
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL 262
E + ++G +G+GK++ + R+IEP G I+IDG DI L LR ++
Sbjct: 28 EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77
Score = 46.5 bits (111), Expect = 2e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS 553
++G +G+GK++ + R+IEP G I+IDG DI L LR ++ + Q LF
Sbjct: 32 LIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFP 88
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 48.9 bits (117), Expect = 2e-06
Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 51/228 (22%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVL 269
E+V IVG +G+GKS+L L + P G ++ +G + L LR++
Sbjct: 32 EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNK-------- 83
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT--EDVK-PLIITPFCSNLQRFYVATS 326
F+ Y F + FT E+V PL+I A
Sbjct: 84 -----------KLGFI-------YQFHHLLPDFTALENVAMPLLI----GKKSVKE-AKE 120
Query: 327 RQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD- 385
R + LE V +H ++G G+RQ + +ARAL+ + +++ DE T +D
Sbjct: 121 RAYEMLEKVGLEHRINHRPSELSG--GERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178
Query: 386 ---DLIQ---STIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
DL+ + + F L + H L DRVL + G +
Sbjct: 179 IIFDLMLELNRELNTSF-----LVVTHDLELAKKLDRVLEMKDGQLFN 221
Score = 36.9 bits (86), Expect = 0.014
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533
V LS+ V IVG +G+GKS+L L + P G ++ +G + L
Sbjct: 24 VSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKL 72
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 48.7 bits (117), Expect = 2e-06
Identities = 50/225 (22%), Positives = 84/225 (37%), Gaps = 37/225 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ G++G GAGK++ L + P GT I+G IRT R L PQ
Sbjct: 29 EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQSLGYCPQ----- 82
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
F + + L F+ ++ + ++K + R L L
Sbjct: 83 FDALFDE------LTVREHLRFYARLKGLPKSEIKEEV------------ELLLRVLG-L 123
Query: 333 ESVSRSPI--YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
+ S G +R+L LA AL+ +L+LDE T+ +D + I
Sbjct: 124 TDKANKRARTLS------GGM--KRKL-SLAIALIGGPSVLLLDEPTSGLDPASRRAIWD 174
Query: 391 TIRSEFAHCTVLTIAHRLNTI-IDSDRVLVLDKGLVVEFDSPSVL 434
I +++ H ++ DR+ ++ G + SP L
Sbjct: 175 LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
Score = 43.6 bits (104), Expect = 1e-04
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
G++G GAGK++ L + P GT I+G IRT R L PQ LF
Sbjct: 31 FGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQSLGYCPQFDALFDE 89
Query: 555 -----TLRL-------NLDPVGESSDEAIWKALEL-AHLNTFVSNL 587
LR + E + + + L L N L
Sbjct: 90 LTVREHLRFYARLKGLPKSEIKEEVELLL-RVLGLTDKANKRARTL 134
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 50.3 bits (121), Expect = 2e-06
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 35/213 (16%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDL-ETDDLIQSTIRSEFAHCTV-LTIAHRLN 409
+GQRQ++ +A+AL R +++ DE T+++ E + L IR A V L ++HR+
Sbjct: 143 IGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLF-RVIRELRAEGRVILYVSHRME 201
Query: 410 TIID-SDRVLVLDKG-LVVEFDSPSVL--------M--KNKASIFYSMAKDAGLAWLAVR 457
I D + V G V FD + + M + I+ + G VR
Sbjct: 202 EIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQAMVGREIGDIYGYRPRPLG----EVR 257
Query: 458 LETVGNLITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE 517
L G L L + SV VG+ G GAG+S L L+
Sbjct: 258 LRLDG------------LKGPGLREP-ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR 304
Query: 518 PADGTIIIDG--VDIRTLGLHTLRSRLTIIPQD 548
G + +DG +DIR+ +R+ + + P+D
Sbjct: 305 RTAGQVYLDGKPIDIRSPR-DAIRAGIMLCPED 336
Score = 31.0 bits (71), Expect = 1.8
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDIRT 252
R G E+VG+ G GAG+S L L+ G + +DG +DIR+
Sbjct: 277 RAG-EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRS 321
Score = 29.9 bits (68), Expect = 4.2
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 12/81 (14%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDL----ETDDLIQSTIRSEFAH--CTVLTIAH 406
G +Q L R L K+++LDE T ID+ E ++I E A VL ++
Sbjct: 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIY-----ELAAQGVAVLFVSS 454
Query: 407 RLNTIID-SDRVLVLDKGLVV 426
L ++ +DR++V+ +G +
Sbjct: 455 DLPEVLGVADRIVVMREGRIA 475
Score = 28.7 bits (65), Expect = 9.4
Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 491 YAMQV-GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531
A QV ++G GAGKS+L L +P G+I+IDG ++R
Sbjct: 28 RAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMR 69
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 50.0 bits (119), Expect = 2e-06
Identities = 55/256 (21%), Positives = 100/256 (39%), Gaps = 48/256 (18%)
Query: 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA--DGTIIIDGVDIRTLG 254
D + G EL+ ++G++G GK++L A+ ++ A G I I D+
Sbjct: 17 ANTVLDDLSLEIEAG-ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75
Query: 255 LHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF 314
H + L ++ Q A +F + V +V + L + K I
Sbjct: 76 PH--KRGLALLFQNYA----------LFPHLKVEDNVAF-----GLRAQKMPKADI---- 114
Query: 315 CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILD 374
R L+ V +H ++G G +Q I +ARA+ + +L+LD
Sbjct: 115 ----------AERVADALKLVGLGDAAAHLPAQLSG--GMQQRIAIARAIAIEPDVLLLD 162
Query: 375 EATAAIDLETDDLIQSTIRSEFA-------HCTVLTIAH-RLNTIIDSDRVLVLDKGLVV 426
E +A+D I++ +R E A T+L + H + + + +D+ ++ G +
Sbjct: 163 EPLSALDAN----IRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
Query: 427 EFDSPSVLMKNKASIF 442
P L A F
Sbjct: 219 AHGEPQALYDAPADGF 234
Score = 29.2 bits (65), Expect = 6.4
Identities = 31/110 (28%), Positives = 52/110 (47%), Gaps = 18/110 (16%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPA--DGTIIIDGVDI-------RTLGL----HTLRSR 541
+ ++G++G GK++L A+ ++ A G I I D+ R L L + L
Sbjct: 34 LALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLFQNYALFPH 93
Query: 542 LTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARL 591
L + +D V F LR P + + E + AL+L L ++LPA+L
Sbjct: 94 LKV--EDNVAFG--LRAQKMPKADIA-ERVADALKLVGLGDAAAHLPAQL 138
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 49.0 bits (117), Expect = 2e-06
Identities = 63/237 (26%), Positives = 99/237 (41%), Gaps = 59/237 (24%)
Query: 195 EKGEVEFKDYKVRYREGLEL-----VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
E V F +V LEL + ++G GAGKS+L + ++ P +G I
Sbjct: 8 ENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK----- 62
Query: 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL 309
R L R+ +PQ L ++ +P++V F L K
Sbjct: 63 -RNGKL-----RIGYVPQKL------------YLDTTLPLTVNRF-----LRLRPGTKKE 99
Query: 310 IITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTK 369
I P LKR V + + ++G G+ Q + LARALL + +
Sbjct: 100 DILP--------------ALKR---VQAGHLIDAPMQKLSG--GETQRVLLARALLNRPQ 140
Query: 370 ILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRLNTII-DSDRVLVLD 421
+L+LDE T +D + DLI +R E C VL ++H L+ ++ +D VL L+
Sbjct: 141 LLVLDEPTQGVDVNGQVALYDLIDQ-LRREL-DCAVLMVSHDLHLVMAKTDEVLCLN 195
Score = 28.9 bits (65), Expect = 5.9
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 24/78 (30%)
Query: 489 VSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
VS ++ G ++G GAGKS+L + ++ P +G I R L R+
Sbjct: 23 VSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI------KRNGKL-----RIGY 71
Query: 545 IPQDPVLFSGTLRLNLDP 562
+PQ +L LD
Sbjct: 72 VPQ---------KLYLDT 80
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 49.3 bits (118), Expect = 2e-06
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--RTLGLHTLRSRLTIIPQ 267
E VG++G TG+GKS+L L +++P G IIIDGVDI + + L +R ++ ++ Q
Sbjct: 34 EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQ 90
Score = 48.5 bits (116), Expect = 4e-06
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--RTLGLHTLRSRLTIIPQDP 549
VG++G TG+GKS+L L +++P G IIIDGVDI + + L +R ++ ++ Q P
Sbjct: 36 VGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYP 92
Score = 42.3 bits (100), Expect = 3e-04
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ++ + +A + + KILILDE TA +D + D I + I+ + + T++ ++H +
Sbjct: 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMED 207
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKN 437
+ +DR++V++KG +P + K
Sbjct: 208 VAKLADRIIVMNKGKCELQGTPREVFKE 235
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 48.7 bits (117), Expect = 3e-06
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 42/187 (22%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTII--PQVLA 270
E+VG++G GAGK++ + +++P G I++DG DI L +H R+RL I PQ A
Sbjct: 27 EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK-RARLGIGYLPQE-A 84
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
+IF L E++ L + L+ ++ + +
Sbjct: 85 SIF------------------------RKLTVEENI--LAV------LEIRGLSKKEREE 112
Query: 331 RLESV----SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDD 386
+LE + + + +++G G+R+ + +ARAL K L+LDE A +D
Sbjct: 113 KLEELLEEFHITHLRKSKASSLSG--GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQ 170
Query: 387 LIQSTIR 393
IQ I+
Sbjct: 171 DIQKIIK 177
Score = 47.5 bits (114), Expect = 6e-06
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V LSV VG++G GAGK++ + +++P G I++DG DI L +H R+RL I
Sbjct: 19 VSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK-RARLGI 77
Query: 545 I--PQDPVLFSG-TLRLNLDPVGE 565
PQ+ +F T+ N+ V E
Sbjct: 78 GYLPQEASIFRKLTVEENILAVLE 101
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 48.9 bits (117), Expect = 3e-06
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDD-LIQST--IRSEFAHCTVLTIAHRLN 409
GQRQ + L A L KIL+LDE TAA+D +T + +++ T I E T L + H +
Sbjct: 152 GQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEH-KLTTLMVTHNME 210
Query: 410 TIID-SDRVLVLDKGLVV 426
+D +R+++L G +V
Sbjct: 211 DALDYGNRLIMLHSGKIV 228
Score = 38.1 bits (89), Expect = 0.010
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549
V ++G GAGKS+L A+ ++P G I+IDGVD+ + + L + QDP
Sbjct: 35 VTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDP 89
Score = 34.6 bits (80), Expect = 0.11
Identities = 17/38 (44%), Positives = 26/38 (68%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
+ V ++G GAGKS+L A+ ++P G I+IDGVD+
Sbjct: 33 DFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDV 70
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 48.5 bits (116), Expect = 3e-06
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQRQ + LARAL + K+L+LDE A+D + ++ +R + H T + + H
Sbjct: 140 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEE 199
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
++ +DRV+V++KG + + +P + + AS F
Sbjct: 200 ALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
Score = 32.3 bits (74), Expect = 0.48
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 8/41 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVD 249
ELV ++G +G+GK++ L R+I P GTI+ G D
Sbjct: 29 ELVALLGPSGSGKTT----LLRLIAGLERPDSGTILFGGED 65
Score = 30.4 bits (69), Expect = 2.2
Identities = 33/117 (28%), Positives = 50/117 (42%), Gaps = 30/117 (25%)
Query: 495 VGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDI-------RTLGL----HTLR 539
V ++G +G+GK++ L R+I P GTI+ G D R +G + L
Sbjct: 31 VALLGPSGSGKTT----LLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQHYALF 86
Query: 540 SRLTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKA-----LELAHLNTFVSNLPARL 591
+T+ D V F L + P E EA +A L+L L+ PA+L
Sbjct: 87 RHMTVF--DNVAFG----LRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQL 137
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 48.4 bits (116), Expect = 3e-06
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 23/103 (22%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID--------LETDDLIQSTIRSEFAHCT---- 400
GQ+Q + +ARAL+ + K+L+LDE A+D LE L Q + F T
Sbjct: 134 GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL-QKELGITFVFVTHDQE 192
Query: 401 -VLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
LT+ SDR+ V++KG + + +P + + A+ F
Sbjct: 193 EALTM---------SDRIAVMNKGKIQQIGTPEEIYEEPANRF 226
Score = 28.7 bits (65), Expect = 7.1
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 9/64 (14%)
Query: 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRT 252
G V + +EG E ++G +G GK++L R+I P G I++DG DI
Sbjct: 12 GFVALDGVSLDIKEG-EFFTLLGPSGCGKTTL----LRLIAGFETPTSGEILLDGKDITN 66
Query: 253 LGLH 256
L H
Sbjct: 67 LPPH 70
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 48.4 bits (116), Expect = 4e-06
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARAL + ++L+LDE T+A+D I+ I+ T++ + H +
Sbjct: 148 GQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAA 207
Query: 413 D-SDRVLVLDKGLVVEFDSP 431
SDR G +VE+
Sbjct: 208 RISDRTAFFYDGELVEYGPT 227
Score = 31.9 bits (73), Expect = 0.86
Identities = 19/65 (29%), Positives = 35/65 (53%), Gaps = 7/65 (10%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDI--RTLGLHTLRSRLTIIPQ 547
++G +G GKS+L +L R+ + +G ++ DG DI + + + LR R+ ++ Q
Sbjct: 30 TALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQ 89
Query: 548 DPVLF 552
P F
Sbjct: 90 KPNPF 94
Score = 30.0 bits (68), Expect = 3.0
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDI 250
++ ++G +G GKS+L +L R+ + +G ++ DG DI
Sbjct: 28 QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDI 70
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 47.9 bits (114), Expect = 4e-06
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 37/226 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
EL+G++G GAGK++L A+ +I PA GT+ + G H + +PQ
Sbjct: 7 ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRH-----IGYVPQRHE-- 59
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKR- 331
F + P+SV + + + I + A L+R
Sbjct: 60 FAWDF----------PISVAHTVM--------SGRTGHIGWLRRPCVADFAAVRDALRRV 101
Query: 332 -LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
L ++ P+ GE ++G GQRQ + +ARAL + +L+LDE +D+ T +L+
Sbjct: 102 GLTELADRPV----GE-LSG--GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154
Query: 391 TIRS-EFAHCTVLTIAHRLNTIIDS-DRVLVLDKGLVVEFDSPSVL 434
A +L H L + + DRV++L+ G V+ +P L
Sbjct: 155 LFIELAGAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQL 199
Score = 32.9 bits (75), Expect = 0.34
Identities = 17/50 (34%), Positives = 26/50 (52%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH 536
LS +G++G GAGK++L A+ +I PA GT+ + G H
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRH 50
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 48.6 bits (117), Expect = 4e-06
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD----DLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q + +ARAL K+L+ DEAT+A+D T +L++ I E T++ I H +
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD-INREL-GLTIVLITHEM 201
Query: 409 NTI--IDSDRVLVLDKGLVVE 427
+ + I DRV V+D G +VE
Sbjct: 202 DVVKRI-CDRVAVIDAGRLVE 221
Score = 45.9 bits (110), Expect = 3e-05
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 259
E+ G++G +GAGKS+L + + P G +++DG D+ L LR
Sbjct: 32 EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78
Score = 44.8 bits (107), Expect = 8e-05
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 539
G++G +GAGKS+L + + P G +++DG D+ L LR
Sbjct: 35 GVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 47.8 bits (114), Expect = 4e-06
Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 37/202 (18%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII----DGVDIRTLGLHTLRSRLTIIPQV 268
E V + G +GAGKS+L +L+ P G I++ VD+ +V
Sbjct: 35 ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR----------EV 84
Query: 269 LAT-IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV--KPLIITPFCSNLQRFYVAT 325
L I Y + F+ VI VS L +V +PL+ +
Sbjct: 85 LEVRRKTIGYVSQ-FLRVIPRVSAL------------EVVAEPLLERG--VPREAARARA 129
Query: 326 SRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD 385
L RL R ++ T +G G++Q + +AR + IL+LDE TA++D
Sbjct: 130 RELLARLNIPER--LWHLPPATFSG--GEQQRVNIARGFIADYPILLLDEPTASLDAANR 185
Query: 386 DLIQSTIRSEFAH-CTVLTIAH 406
++ I A ++ I H
Sbjct: 186 QVVVELIAEAKARGAALIGIFH 207
Score = 33.5 bits (77), Expect = 0.21
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII 525
V L+V+ V + G +GAGKS+L +L+ P G I++
Sbjct: 27 VSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILV 67
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 49.2 bits (118), Expect = 4e-06
Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 49/224 (21%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLGLH-TLRSRLTIIPQV 268
E+V + G GAGKS+L L + P +G II +G +++ + T R+ + II Q
Sbjct: 32 EIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQE 90
Query: 269 LATIFVICYSTPVFIFVIVP-VSVLYFFIQVSLIF--TEDVKPLIITPF-CSNLQRFYVA 324
LA +V +SVL IF E ITP + Y+
Sbjct: 91 LA---------------LVKELSVL------ENIFLGNE------ITPGGIMDYDAMYLR 123
Query: 325 TSRQLKRLESVSRSPIYSHFGETVTGN--VGQRQLICLARALLRKTKILILDEATAAI-D 381
+ L +L + +P T GN +GQ+QL+ +A+AL ++ ++LILDE TA++ +
Sbjct: 124 AQKLLAQL-KLDINP------ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176
Query: 382 LETDDLIQSTIRSEFAH-CTVLTIAHRLNTIID-SDRVLVLDKG 423
ET L+ IR AH + I+H+LN + SD + V+ G
Sbjct: 177 SETAVLL-DIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDG 219
Score = 41.5 bits (98), Expect = 0.001
Identities = 68/235 (28%), Positives = 95/235 (40%), Gaps = 59/235 (25%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDG--VDIRT------LGLHTL- 258
R G E++GI G GAG++ L LF +G I IDG V IR G+ +
Sbjct: 286 RRG-EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVP 344
Query: 259 --RSRLTIIPQ--VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL-IITP 313
R R I+P V I ++ L F S I +D L I
Sbjct: 345 EDRKRDGIVPVMGVGKNI---------------TLAALDRFTGGSRI--DDAAELKTILE 387
Query: 314 FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILIL 373
+QR V T+ + +S G +Q LA+ LL KILIL
Sbjct: 388 S---IQRLKVKTASPELAIARLSG---------------GNQQKAVLAKCLLLNPKILIL 429
Query: 374 DEATAAIDL----ETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423
DE T ID+ E LI ++ A ++ I+ L ++ SDRVLV+ +G
Sbjct: 430 DEPTRGIDVGAKYEIYKLINQLVQQGVA---IIVISSELPEVLGLSDRVLVMHEG 481
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 47.5 bits (114), Expect = 5e-06
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ+Q + +ARAL KI++ DE T +D ET + +R + A T++ + H
Sbjct: 144 GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203
Query: 411 IIDSDRVLVLDKGLV 425
+DR++ L G +
Sbjct: 204 AEYADRIIELRDGKI 218
Score = 39.8 bits (94), Expect = 0.002
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPAD-GTIIIDGVDIRTLGLHTL----RSRLTIIPQDP 549
V IVG +G+GKS+L L + ++ G + +DG DI L L R + + Q
Sbjct: 33 VAIVGPSGSGKSTL-LNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSF 91
Query: 550 VL---FSGT--LRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE--GGE 600
L + + L L G E +A EL L RL H SE GG+
Sbjct: 92 NLLPDLTALENVELPLLLAGVPKKERRERAEELLER----VGLGDRLNHYPSELSGGQ 145
Score = 38.2 bits (90), Expect = 0.005
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPAD-GTIIIDGVDIRTLGLHTLRS 260
E V IVG +G+GKS+L L + ++ G + +DG DI L L +
Sbjct: 31 EFVAIVGPSGSGKSTL-LNILGGLDRPTSGEVRVDGTDISKLSEKELAA 78
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 47.9 bits (114), Expect = 5e-06
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 324 ATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
A +R K L+ + P + ++G GQ+Q + +ARAL+ + ++L+ DE TAA+D E
Sbjct: 118 ALARAEKLLKRLRLKPYADRYPLHLSG--GQQQRVAIARALMMEPQVLLFDEPTAALDPE 175
Query: 384 TDDLIQSTIRSEFAHC--TVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKAS 440
I S I+ E A T + + H + + RV+ ++ G +VE S + +
Sbjct: 176 ITAQIVSIIK-ELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTE 234
Query: 441 IF 442
F
Sbjct: 235 AF 236
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 48.3 bits (115), Expect = 6e-06
Identities = 62/235 (26%), Positives = 96/235 (40%), Gaps = 48/235 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV--LA 270
E G++G GAGKS++ + + P G I + GV + R+R+ ++PQ L
Sbjct: 68 ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQFDNLD 126
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
F + + VF YF + I E V P ++ +
Sbjct: 127 LEFTVRENLLVF--------GRYFGMSTREI--EAVIPSLL----------------EFA 160
Query: 331 RLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
RLES + + + G G ++ + LARAL+ ++LILDE T +D LI
Sbjct: 161 RLESKADARVSDLSG-------GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWE 213
Query: 391 TIRSEFAHC-TVLTIAH------RLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNK 438
+RS A T+L H RL DR+ VL+ G + P L+
Sbjct: 214 RLRSLLARGKTILLTTHFMEEAERL-----CDRLCVLEAGRKIAEGRPHALIDEH 263
Score = 34.4 bits (79), Expect = 0.15
Identities = 37/141 (26%), Positives = 57/141 (40%), Gaps = 28/141 (19%)
Query: 474 VLSKETLNAGLVGLSVSYAMQV---------------GIVGRTGAGKSSLTLALFRIIEP 518
S T+ L G+S SY + G++G GAGKS++ + + P
Sbjct: 34 PGSMSTVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSP 93
Query: 519 ADGTIIIDGVDIRTLGLHTLRSRLTIIPQ-DPVLFSGTLRLNLDPVG-------ESSDEA 570
G I + GV + R+R+ ++PQ D + T+R NL G +
Sbjct: 94 DAGKITVLGVPVPARA-RLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAV 152
Query: 571 IWKALELAHL----NTFVSNL 587
I LE A L + VS+L
Sbjct: 153 IPSLLEFARLESKADARVSDL 173
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 47.7 bits (113), Expect = 6e-06
Identities = 43/199 (21%), Positives = 89/199 (44%), Gaps = 29/199 (14%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRI---IEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269
++ ++G +G GKS+ R+ I DG + I+G D++ + LR + ++ Q
Sbjct: 29 KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQ-- 86
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
VF+ I ++ Y +I +D + ++ C + +L
Sbjct: 87 --------QPNVFVKSIYE-NISYAPKLHGMIKNKDEEEALVVD-CLQKVGLFEEVKDKL 136
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
K+ + + GQ+Q +C+ARAL K K+L+LDE T+A+D + +I+
Sbjct: 137 KQ--------------NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIE 182
Query: 390 STIRSEFAHCTVLTIAHRL 408
++ + +++ + H +
Sbjct: 183 ELLKELSHNLSMIMVTHNM 201
Score = 35.4 bits (81), Expect = 0.059
Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 496 GIVGRTGAGKSSLTLALFRI---IEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552
++G +G GKS+ R+ I DG + I+G D++ + LR + ++ Q P +F
Sbjct: 32 ALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVF 91
Query: 553 SGTLRLNL 560
++ N+
Sbjct: 92 VKSIYENI 99
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 47.6 bits (113), Expect = 7e-06
Identities = 22/91 (24%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARAL + ++++LDE T+A+D I+ + + T++ + H + I
Sbjct: 150 GQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAI 209
Query: 413 D-SDRVLVLDKGLVVEF-DSPSVLMKNKASI 441
+D + + +G ++E+ + ++ + K +
Sbjct: 210 RIADYIAFMYRGELIEYGPTREIVERPKNKL 240
Score = 31.4 bits (71), Expect = 1.2
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 497 IVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIR--TLGLHTLRSRLTIIPQDP 549
I+G +G GK++L ++ R+ + +G I G DI L + R ++ ++ Q P
Sbjct: 34 IIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKP 93
Query: 550 VLF 552
F
Sbjct: 94 TPF 96
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 46.8 bits (112), Expect = 7e-06
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 488 SVSYAMQVGI---VGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
VS + G+ +G GAGK++L L + P+ GTI IDG D+ LR R+
Sbjct: 18 GVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76
Query: 545 IPQDP 549
+PQ+
Sbjct: 77 LPQEF 81
Score = 44.5 bits (106), Expect = 5e-05
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 199 VEFKDYKVRYREGLELV-----------GIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
++ ++ RY + L G++G GAGK++L L + P+ GTI IDG
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60
Query: 248 VDIRTLGLHTLRSRLTIIPQ 267
D+ LR R+ +PQ
Sbjct: 61 QDVLKQP-QKLRRRIGYLPQ 79
Score = 36.4 bits (85), Expect = 0.024
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLE 383
G R+ + +A+AL+ ILI+DE TA +D E
Sbjct: 134 GMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 47.3 bits (113), Expect = 7e-06
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
GQ+Q + +ARAL +L++DE A+D T D +Q + + T++ + H ++
Sbjct: 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE 198
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+DR+ ++ G +V+ +P ++++ A+ F
Sbjct: 199 AFRLADRIAIMKNGEIVQVGTPDEILRSPANDF 231
Score = 45.8 bits (109), Expect = 3e-05
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL 262
E + ++G +G+GK++ + R+IEP G I IDG DIR LR ++
Sbjct: 28 EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKI 77
Score = 43.8 bits (104), Expect = 1e-04
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 498 VGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TL 556
+G +G+GK++ + R+IEP G I IDG DIR LR ++ + Q LF T+
Sbjct: 33 IGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92
Query: 557 RLNLDPV----GESSDEAIWKALELAHL-NTFVSNLPARLQHEVSEG 598
N+ V ++ +A EL L + R HE+S G
Sbjct: 93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGG 139
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 47.5 bits (113), Expect = 8e-06
Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 44/236 (18%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276
IVG+TG+GKS+L + +++P GT+ +D + I T +++ I V I +
Sbjct: 38 IVGQTGSGKSTLIQNINALLKPTTGTVTVDDITI------THKTKDKYIRPVRKRIGM-- 89
Query: 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDV--KPLIITP--FCSNLQRFYVATSRQLKRL 332
VF F P S L+ ED + +I P F NL R L L
Sbjct: 90 ----VFQF---PESQLF----------EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDL 132
Query: 333 ----ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
+ +S+SP ++G GQ + I + L I++LDE TA +D ++ +
Sbjct: 133 GFSRDVMSQSPF------QMSG--GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQV 184
Query: 389 QSTIRS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASI 441
++S + T++ ++H +N + +D V+V+ +G +V SP L K+K +
Sbjct: 185 MRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKL 240
Score = 34.4 bits (79), Expect = 0.15
Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI----RTLGLHTLRSRLTIIPQDP 549
IVG+TG+GKS+L + +++P GT+ +D + I + + +R R+ ++ Q P
Sbjct: 38 IVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFP 94
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 46.3 bits (110), Expect = 8e-06
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDIRTLGLHTLRSRL 542
+ + + ++G GAGKS+L L L ++ P G ++IDG +D GL R R+
Sbjct: 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRV 70
Query: 543 TIIPQDP--VLFSGTLR-------LNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQH 593
++ QDP LF+ + LNL + + +AL S L R H
Sbjct: 71 GLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA----SGLRERPTH 126
Query: 594 EVSEG 598
+S G
Sbjct: 127 CLSGG 131
Score = 41.6 bits (98), Expect = 4e-04
Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 34/203 (16%)
Query: 193 WPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDI 250
+P EV K G E++ ++G GAGKS+L L L ++ P G ++IDG +D
Sbjct: 1 YPGGPEV-LKGLNFAAERG-EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 251 RTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLI 310
GL R R V + P L F V +DV
Sbjct: 59 SRKGLLERRQR-------------------VGLVFQDPDDQL-FAADVD----QDVA--- 91
Query: 311 ITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKI 370
P L V R + L +V S + ++G G+++ + +A A+ + +
Sbjct: 92 FGPLNLGLSEAEV-ERRVREALTAVGASGLRERPTHCLSG--GEKKRVAIAGAVAMRPDV 148
Query: 371 LILDEATAAIDLETDDLIQSTIR 393
L+LDE TA +D + + + +R
Sbjct: 149 LLLDEPTAGLDPAGREQMLAILR 171
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 47.6 bits (113), Expect = 8e-06
Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 48/232 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV--LA 270
E G++G GAGKS++ L +I P G I + G + + R + ++PQ L
Sbjct: 31 ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARVAIGVVPQFDNLD 89
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
F + + VF YF + I E V P ++ +
Sbjct: 90 PEFTVRENLLVF--------GRYFGMSTREI--EAVIPSLL----------------EFA 123
Query: 331 RLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
RLES + + G G ++ + LARAL+ ++LILDE T +D LI
Sbjct: 124 RLESKADVRVALLSG-------GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWE 176
Query: 391 TIRSEFAHC-TVLTIAH------RLNTIIDSDRVLVLDKGLVVEFDSPSVLM 435
+RS A T+L H RL DR+ VL+ G + P L+
Sbjct: 177 RLRSLLARGKTILLTTHFMEEAERL-----CDRLCVLESGRKIAEGRPHALI 223
Score = 34.1 bits (78), Expect = 0.17
Identities = 36/140 (25%), Positives = 58/140 (41%), Gaps = 28/140 (20%)
Query: 484 LVGLSVSYAMQV---------------GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 528
LVG+S SY +V G++G GAGKS++ L +I P G I + G
Sbjct: 7 LVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGE 66
Query: 529 DIRTLGLHTLRSRLTIIPQ-DPVLFSGTLRLNLDPVG-------ESSDEAIWKALELAHL 580
+ + R + ++PQ D + T+R NL G + I LE A L
Sbjct: 67 PVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARL 125
Query: 581 ----NTFVSNLPARLQHEVS 596
+ V+ L ++ ++
Sbjct: 126 ESKADVRVALLSGGMKRRLT 145
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 47.0 bits (112), Expect = 9e-06
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 41/183 (22%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQVL 269
E V IVG +G+GKS+L L + +P+ G + + G + L LR+R
Sbjct: 37 ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGF---- 92
Query: 270 ATIFVICYSTPVF-IFVIVPVSVLYFFIQVSLIFTEDVK-PLIITPFCSNLQRFYVATSR 327
VF F ++P +L E+V PL L+ A SR
Sbjct: 93 -----------VFQSFHLIP----------NLTALENVALPLE-------LRGESSADSR 124
Query: 328 QLKR--LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD 385
+ LE+V +H+ ++G G++Q + LARA + +L DE T +D T
Sbjct: 125 AGAKALLEAVGLGKRLTHYPAQLSG--GEQQRVALARAFAGRPDVLFADEPTGNLDRATG 182
Query: 386 DLI 388
D I
Sbjct: 183 DKI 185
Score = 40.1 bits (94), Expect = 0.001
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSR 541
V L V V IVG +G+GKS+L L + +P+ G + + G + L LR+R
Sbjct: 29 VELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRAR 88
Query: 542 --------LTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKA---LELAHLNTFVSNLPAR 590
+IP L + L L L GESS ++ A LE L +++ PA+
Sbjct: 89 HVGFVFQSFHLIPNLTALENVALPLELR--GESSADSRAGAKALLEAVGLGKRLTHYPAQ 146
Query: 591 LQHEVSEGGE 600
L GGE
Sbjct: 147 LS-----GGE 151
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 47.1 bits (113), Expect = 9e-06
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 19/88 (21%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAH-- 406
GQ+Q +C+ARAL K ++L++DE T+A+D L+ ++LI ++ ++ T++ + H
Sbjct: 153 GQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE-LKKKY---TIVIVTHNM 208
Query: 407 ----RLNTIIDSDRVLVLDKGLVVEFDS 430
R+ SD G +VEF
Sbjct: 209 QQAARV-----SDYTAFFYLGELVEFGP 231
Score = 32.1 bits (74), Expect = 0.70
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 7/71 (9%)
Query: 497 IVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTLGLHT--LRSRLTIIPQDP 549
++G +G GKS+L L R+ + +G +++DG +I + LR R+ ++ Q P
Sbjct: 38 LIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKP 97
Query: 550 VLFSGTLRLNL 560
F ++ N+
Sbjct: 98 NPFPMSIYDNV 108
Score = 29.4 bits (67), Expect = 4.8
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 5/41 (12%)
Query: 217 IVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT 252
++G +G GKS+L L R+ + +G +++DG +I
Sbjct: 38 LIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYD 78
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 47.0 bits (112), Expect = 1e-05
Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 54/239 (22%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPAD----GTIIIDGVDIRTLGLHTLRSRLT-IIPQ 267
E++ +VG +G+GKS LA+ ++ P G I++DG + L ++R R I Q
Sbjct: 13 EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL---SIRGRHIATIMQ 69
Query: 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR 327
T F P+F ++ I+ + K A +
Sbjct: 70 NPRTAF-----NPLF-------TMGNHAIETLRSLGKLSK---------------QARAL 102
Query: 328 QLKRLESVS-RSP--IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDL-- 382
L+ LE+V P + + ++G + QR +I LA LL + LI DE T +D+
Sbjct: 103 ILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALA--LLLEPPFLIADEPTTDLDVVN 160
Query: 383 --ETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE-------FDSP 431
L++ +R F +L I H L + +D V V+D G +VE F +P
Sbjct: 161 QARVLKLLRE-LRQLFG-TGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNP 217
Score = 34.3 bits (79), Expect = 0.13
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 8/60 (13%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPAD----GTIIIDGVDIRTLGLHTLRSRLT-IIPQDP 549
+ +VG +G+GKS LA+ ++ P G I++DG + L ++R R I Q+P
Sbjct: 15 LALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL---SIRGRHIATIMQNP 71
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 47.0 bits (111), Expect = 1e-05
Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 43/229 (18%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273
+ GI+G +G+GKS+L L R+IE D I +DG
Sbjct: 38 IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGK------------------------- 72
Query: 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL----IITPFCSNLQRFYVATSRQL 329
V+ + +F + + +V ++F + P I L+ + R++
Sbjct: 73 VLYFGKDIF-----QIDAIKLRKEVGMVFQQP-NPFPHLSIYDNIAYPLKSHGIKEKREI 126
Query: 330 KRL--ESVSRSPIYSHFGETVTGNV-----GQRQLICLARALLRKTKILILDEATAAIDL 382
K++ E + + ++ + + GQ+Q + +ARAL K K+L++DE T+ ID+
Sbjct: 127 KKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI 186
Query: 383 ETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430
I+ I ++ ++H + +D V L G +VE+ S
Sbjct: 187 VNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235
Score = 34.6 bits (79), Expect = 0.11
Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIID------GVDIRTLGLHTLRSRLTIIPQDP 549
GI+G +G+GKS+L L R+IE D I +D G DI + LR + ++ Q P
Sbjct: 40 GIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQP 99
Query: 550 VLF 552
F
Sbjct: 100 NPF 102
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 46.6 bits (111), Expect = 1e-05
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 7/78 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q + LARAL+ + +L+LDE A+D +E DLI+S + TVL + H +
Sbjct: 137 GQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH--GFTVLLVTHDV 194
Query: 409 NTIID-SDRVLVLDKGLV 425
+ + +DRVL++++G +
Sbjct: 195 SEAVAMADRVLLIEEGKI 212
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 46.8 bits (112), Expect = 1e-05
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 360 LARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-S 414
LARA+ ++L LDE T+ +D D+LI + TV+ + H L++++ +
Sbjct: 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELI-RELNDALG-LTVIMVTHDLDSLLTIA 213
Query: 415 DRVLVLDKGLVVEFDSPSVLMKN 437
DRV VL G V+ +P L+ +
Sbjct: 214 DRVAVLADGKVIAEGTPEELLAS 236
Score = 46.0 bits (110), Expect = 2e-05
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQDPVL 551
+ I+G +G+GKS+L + ++ P G I+IDG DI L L+ +R R+ ++ Q L
Sbjct: 37 LAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL 96
Query: 552 FS 553
FS
Sbjct: 97 FS 98
Score = 42.6 bits (101), Expect = 3e-04
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRL 262
E++ I+G +G+GKS+L + ++ P G I+IDG DI L L+ +R R+
Sbjct: 35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM 87
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 46.9 bits (111), Expect = 1e-05
Identities = 35/134 (26%), Positives = 74/134 (55%), Gaps = 12/134 (8%)
Query: 312 TPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFG----ETVTGNVGQRQLICLARALLRK 367
TPF ++ +Q + L++++R + HF T++G GQ+Q + +ARAL+++
Sbjct: 115 TPFWRTCFSWFTREQKQ-RALQALTRVGM-VHFAHQRVSTLSG--GQQQRVAIARALMQQ 170
Query: 368 TKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424
K+++ DE A++D E+ ++ T+R ++ TV+ H+++ + +R++ L +G
Sbjct: 171 AKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230
Query: 425 VVEFDSPSVLMKNK 438
V +D S N+
Sbjct: 231 VF-YDGSSQQFDNE 243
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 47.0 bits (112), Expect = 2e-05
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAH-RLN 409
GQ+Q + LARAL+ K K+L+ DE + +D ++ IR + + T L + H +
Sbjct: 140 GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE 199
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
SD V+V++KG +++ SP L + AS F
Sbjct: 200 AFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 45.7 bits (109), Expect = 2e-05
Identities = 59/243 (24%), Positives = 95/243 (39%), Gaps = 69/243 (28%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTL 258
D + R+G E + + G +GAGK++L L+ + P+ G + I G D+ L L L
Sbjct: 19 HDVSLHIRKG-EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 259 RSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYF---FIQVSLIFTEDVKPLIITPFC 315
R R+ ++ Q F + V+ V +P+ V IQ V
Sbjct: 78 RRRIGVVFQ----DFRLLPDRTVYENVALPLEVRGKKEREIQ------RRVGAA------ 121
Query: 316 SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDE 375
L V F E ++G G++Q + +ARA++ +L+ DE
Sbjct: 122 ----------------LRQVGLEHKADAFPEQLSG--GEQQRVAIARAIVNSPPLLLADE 163
Query: 376 ATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN----TII----DSD-------RVLVL 420
T +D DL + +L + RLN T+I D RV++L
Sbjct: 164 PTGNLD---PDLSER----------ILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIIL 210
Query: 421 DKG 423
D G
Sbjct: 211 DDG 213
Score = 38.0 bits (89), Expect = 0.006
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQD 548
+ G +GAGK++L L+ + P+ G + I G D+ L L LR R+ ++ QD
Sbjct: 33 LTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQD 87
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 46.0 bits (110), Expect = 2e-05
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET----DDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q + +ARAL+ KI++ DE T +D +T +L++ + T++ + H
Sbjct: 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER--GKTIIMVTHDP 203
Query: 409 NTIIDSDRVLVLDKGLVVE 427
+DRV+ L G + E
Sbjct: 204 ELAKYADRVIELKDGKIEE 222
Score = 38.6 bits (91), Expect = 0.004
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPAD-GTIIIDGVDIRTLG---LHTLR 259
E V IVG +G+GKS+L L L ++ G ++I+G D+ L L LR
Sbjct: 32 EFVAIVGPSGSGKSTL-LNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81
Score = 35.9 bits (84), Expect = 0.031
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 6/59 (10%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPAD-GTIIIDGVDIRTLG---LHTLR-SRLTIIPQD 548
V IVG +G+GKS+L L L ++ G ++I+G D+ L L LR ++ + Q+
Sbjct: 34 VAIVGPSGSGKSTL-LNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQN 91
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 46.8 bits (111), Expect = 2e-05
Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 36/233 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ ++G +G GKS+L L +P G I++DGVD L+ +P I
Sbjct: 46 EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD------------LSHVPPYQRPI 93
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
++ S +F + V ++ + Q L E SR + L
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE-------------------IASRVNEML 134
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
V ++G GQRQ + LAR+L ++ K+L+LDE A+D + D +Q +
Sbjct: 135 GLVHMQEFAKRKPHQLSG--GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192
Query: 393 RS--EFAHCTVLTIAH-RLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
E T + + H + + + R+ ++++G V+ P + ++ + +
Sbjct: 193 VDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245
Score = 30.6 bits (69), Expect = 2.2
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
V L++ ++G +G GKS+L L +P G I++DGVD+
Sbjct: 38 VSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDL 83
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 45.1 bits (108), Expect = 2e-05
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRL 408
GN Q + LAR L R ++LILDE T +D+ I IR VL I+ L
Sbjct: 108 GNQ---QKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164
Query: 409 NTIID-SDRVLVLDKG 423
+ ++ DR+LV+ +G
Sbjct: 165 DELLGLCDRILVMYEG 180
Score = 41.6 bits (99), Expect = 4e-04
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
R G E+VGI G G G++ L ALF + PA G I +DG +
Sbjct: 24 RAG-EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT 65
Score = 38.6 bits (91), Expect = 0.003
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531
VGI G G G++ L ALF + PA G I +DG +
Sbjct: 29 VGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT 65
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 45.8 bits (109), Expect = 2e-05
Identities = 25/75 (33%), Positives = 48/75 (64%), Gaps = 6/75 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH---CTVLTIAHRLN 409
GQ+Q + +ARAL+ + K+++ DE TAA+D ++ + ++ + A CT+L + H N
Sbjct: 145 GQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQ-KLAREQGCTILIVTHD-N 202
Query: 410 TIID-SDRVLVLDKG 423
I+D +DR++ ++ G
Sbjct: 203 RILDVADRIVHMEDG 217
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 45.6 bits (109), Expect = 2e-05
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--RTLGLHTLRSRLTIIPQDPVLF 552
V I+G +G+GKS+L + + EP GTIIIDG+ + ++ LR ++ ++ Q LF
Sbjct: 29 VVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLF 88
Query: 553 SGTLRLN---LDPV---GESSDEAIWKALEL 577
L L P+ G S EA +ALEL
Sbjct: 89 PHLTVLENITLAPIKVKGMSKAEAEERALEL 119
Score = 44.4 bits (106), Expect = 5e-05
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNT 410
GQ+Q + +ARAL K+++ DE T+A+D E + ++ + A T++ + H +
Sbjct: 139 GQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK-DLAEEGMTMVVVTHEMGF 197
Query: 411 IID-SDRVLVLDKG 423
+ +DRV+ +D G
Sbjct: 198 AREVADRVIFMDDG 211
Score = 42.5 bits (101), Expect = 2e-04
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--RTLGLHTLRSRLTIIPQ 267
E+V I+G +G+GKS+L + + EP GTIIIDG+ + ++ LR ++ ++ Q
Sbjct: 27 EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQ 83
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 45.5 bits (108), Expect = 3e-05
Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 72/254 (28%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
K + ++G E + ++G +G GKS+L + + +P G +I++G I G R
Sbjct: 2 KGVNLTIQQG-EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDR 56
Query: 262 LTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF 321
+ + F SL+ P+ + +
Sbjct: 57 MVV------------------------------FQNYSLL-----------PWLTVRENI 75
Query: 322 YVATSRQLKRLESVSRSPIYSHFGETV-------------TGNVGQRQLICLARALLRKT 368
+A R L L R I V +G + QR + +ARAL +
Sbjct: 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQR--VAIARALSIRP 133
Query: 369 KILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLN-TIIDSDRVLVLDKG-- 423
K+L+LDE A+D T +Q + E TVL + H ++ ++ SDRV++L G
Sbjct: 134 KVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPA 193
Query: 424 ------LVVEFDSP 431
L V F P
Sbjct: 194 ANIGQILEVPFPRP 207
Score = 29.4 bits (66), Expect = 5.0
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
V L++ + ++G +G GKS+L + + +P G +I++G I
Sbjct: 4 VNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQI 49
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 45.2 bits (107), Expect = 3e-05
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
G+RQ + LAR L+R +L+LDE AA+D E DL+ + +E TVL + H+
Sbjct: 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV-LDLHAE-TKMTVLMVTHQP 189
Query: 409 NTIID-SDRVLVLDKGLVV 426
+ RV+ LD G +
Sbjct: 190 EDAKRLAQRVVFLDNGRIA 208
Score = 35.9 bits (83), Expect = 0.030
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533
L+ + IVG +G+GKS+L + P G ++I+GVD+
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA 65
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 45.7 bits (108), Expect = 3e-05
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 59/231 (25%)
Query: 217 IVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLAT 271
++G +G+GKS+L R+IE G + +DG DI + + LR R+ ++ Q+
Sbjct: 34 LMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPN- 92
Query: 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKR 331
P+ L F V+L L R V + ++L+
Sbjct: 93 ----------------PIPNLSIFENVALGL--------------KLNRL-VKSKKELQ- 120
Query: 332 LESVSRSPIYSHFGETVTGNV---------GQRQLICLARALLRKTKILILDEATAAIDL 382
E V + + + V + GQ+Q +C+ARAL + ++L+ DE TA +D
Sbjct: 121 -ERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDP 179
Query: 383 ETDDLIQSTIRSEFAHCTVLTIAH------RLNTIIDSDRVLVLDKGLVVE 427
E I+S T++ + H R+ SD V L KG +VE
Sbjct: 180 ENTAKIESLFLELKKDMTIVLVTHFPQQAARI-----SDYVAFLYKGQIVE 225
Score = 34.9 bits (80), Expect = 0.084
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTLGLHTLR 539
V L + ++G +G+GKS+L R+IE G + +DG DI + + LR
Sbjct: 22 VNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81
Query: 540 SRLTIIPQDP 549
R+ ++ Q P
Sbjct: 82 RRVQMVFQIP 91
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 45.7 bits (108), Expect = 3e-05
Identities = 57/251 (22%), Positives = 108/251 (43%), Gaps = 60/251 (23%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL-------------GLHTLR 259
+++ I+G +G+GKS+ + + +P++G+I+++G I + L LR
Sbjct: 32 DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLR 91
Query: 260 SRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQ 319
+RLT++ Q ++ + V +V+ IQV + ++
Sbjct: 92 TRLTMVFQHFN----------LWSHMTVLENVMEAPIQVLGLSKQE-------------- 127
Query: 320 RFYVATSRQLKRLESV-----SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILD 374
A R +K L V ++ H GQ+Q + +ARAL + ++L+ D
Sbjct: 128 ----ARERAVKYLAKVGIDERAQGKYPVHLSG------GQQQRVSIARALAMEPEVLLFD 177
Query: 375 EATAAIDLETDDLIQSTIR--SEFAH--CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429
E T+A+D E L+ +R + A T++ + H + S V+ L +G + E
Sbjct: 178 EPTSALDPE---LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234
Query: 430 SPSVLMKNKAS 440
+P L N S
Sbjct: 235 APEQLFGNPQS 245
Score = 35.7 bits (82), Expect = 0.045
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL----------- 533
V L + + I+G +G+GKS+ + + +P++G+I+++G I +
Sbjct: 24 VSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVAD 83
Query: 534 --GLHTLRSRLTIIPQDPVLFS 553
L LR+RLT++ Q L+S
Sbjct: 84 KNQLRLLRTRLTMVFQHFNLWS 105
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 45.7 bits (108), Expect = 3e-05
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+AR L + +IL+LDE T+A+D + +DLIQ +R + T++ + H +
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE-LRGSY---TIMIVTHNM 241
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
SD + +G++VE + L N
Sbjct: 242 QQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 45.5 bits (108), Expect = 3e-05
Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 27/235 (11%)
Query: 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL 255
G+ + + G E+V I+G +G+GK++L + + +P GTI + DI
Sbjct: 14 HGQTVLHGIDLEVKPG-EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG--DITIDTA 70
Query: 256 HTLRSRLTIIPQVLATIFVICYSTPVFIFVIVP-VSVLYFFIQVSLIFTEDVKPLIITPF 314
+L + +I Q+ + + + F + P +VL I+ +I + K
Sbjct: 71 RSLSQQKGLIRQLRQHVGFVFQN-----FNLFPHRTVLENIIEGPVIVKGEPKEEAT--- 122
Query: 315 CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILD 374
A +R+L L V + + + ++G GQ+Q + +ARAL + ++++ D
Sbjct: 123 ---------ARAREL--LAKVGLAGKETSYPRRLSG--GQQQRVAIARALAMRPEVILFD 169
Query: 375 EATAAIDLETDDLIQSTIRS-EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427
E T+A+D E + +TIR T++ + H ++ D +DR + +D+G +VE
Sbjct: 170 EPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 45.2 bits (108), Expect = 3e-05
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNT 410
GQ+Q + +ARAL K+++ DE T+A+D E + ++ + A T++ + H +
Sbjct: 140 GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK-DLAEEGMTMIIVTHEMGF 198
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKN 437
+ +DRV+ +D+G ++E P N
Sbjct: 199 AREVADRVIFMDQGKIIEEGPPEEFFDN 226
Score = 43.7 bits (104), Expect = 1e-04
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI-RTLGLHTLRSRLT 543
+ LSV V I+G +G+GKS+L L + EP G+I +DG D+ + LR ++
Sbjct: 21 ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80
Query: 544 IIPQDPVLFSGTLRLN------LDPV---GESSDEAIWKALEL 577
++ Q LF L L PV S EA KALEL
Sbjct: 81 MVFQQFNLFP---HLTVLENVTLAPVKVKKLSKAEAREKALEL 120
Score = 38.6 bits (91), Expect = 0.005
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI-RTLGLHTLRSRLTIIPQ 267
E+V I+G +G+GKS+L L + EP G+I +DG D+ + LR ++ ++ Q
Sbjct: 29 EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQ 84
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 46.0 bits (109), Expect = 3e-05
Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 60/258 (23%)
Query: 199 VEFKDYKVRYREGL------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246
++F++ + RY + L E G++G GAGK++ L + P G+I +
Sbjct: 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67
Query: 247 GVDIRTLGLHTLRSRLTIIPQV--LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTE 304
G + + H R R+ ++PQ L F + + VF YF + +
Sbjct: 68 GEPVPSRARHA-RQRVGVVPQFDNLDPDFTVRENLLVF--------GRYFGLSAAAA-RA 117
Query: 305 DVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARAL 364
V PL+ + +LE+ + + + G G ++ + LARAL
Sbjct: 118 LVPPLL-----------------EFAKLENKADAKVGELSG-------GMKRRLTLARAL 153
Query: 365 LRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC-TVLTIAH------RLNTIIDSDRV 417
+ +L+LDE T +D + L+ +RS A T+L H RL DR+
Sbjct: 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL-----CDRL 208
Query: 418 LVLDKGLVVEFDSPSVLM 435
V+++G + +P L+
Sbjct: 209 CVIEEGRKIAEGAPHALI 226
Score = 31.3 bits (71), Expect = 1.3
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 10/67 (14%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGT 555
G++G GAGK++ L + P G+I + G + + H R R+ ++PQ F
Sbjct: 37 GLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHA-RQRVGVVPQ----FD-- 89
Query: 556 LRLNLDP 562
NLDP
Sbjct: 90 ---NLDP 93
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 45.2 bits (108), Expect = 3e-05
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-- 552
V I+G +G GKS+L + + +P G +++DG + G + + Q+ L
Sbjct: 32 VAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDIGYVFQEDALLPW 86
Query: 553 ---SGTLRLNLDPVGESSDEAIWKA---LELAHLNTFVSNLPARL 591
+ L L+ G+S EA +A LEL L F P +L
Sbjct: 87 LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQL 131
Score = 43.3 bits (103), Expect = 1e-04
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET----DDLIQSTIRSEFAHCTVLTIAH-- 406
G RQ + +ARAL + K+L+LDE A+D T D + TVL + H
Sbjct: 134 GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET--RKTVLLVTHDV 191
Query: 407 ----RLNTIIDSDRVLVLDKG 423
L +DRV+VL
Sbjct: 192 DEAVYL-----ADRVVVLSNR 207
Score = 35.6 bits (83), Expect = 0.043
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
E V I+G +G GKS+L + + +P G +++DG
Sbjct: 30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDG 64
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 45.4 bits (107), Expect = 4e-05
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 333 ESVSRSPIYSHFGETVTGNV-----GQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
ES+ ++ I+ + + N GQ+Q IC+ARAL + K+++LDE T+A+D +
Sbjct: 126 ESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSE 185
Query: 388 IQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428
I+ T+ T + + H L SD+ L G ++E
Sbjct: 186 IEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA 227
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 45.6 bits (108), Expect = 4e-05
Identities = 24/89 (26%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTI 411
GQ++ + +A L + +ILI DE TA +D + + +++Q + ++ + TV I H + +
Sbjct: 180 GQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHV 239
Query: 412 ID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
++ +D V+V+DKG +++ +P + ++
Sbjct: 240 LEVADEVIVMDKGKILKTGTPYEIFTDQH 268
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 45.4 bits (108), Expect = 7e-05
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 319 QRFYVATSRQLKRLESVSRSPIYSHFGETVTG--NVGQRQLICLARALLRKTKILILDEA 376
++ Y + L RL ++ S + + G ++G++Q++ +A+ L ++K++I+DE
Sbjct: 116 KKMYAEADKLLARL-NLRFSS------DKLVGELSIGEQQMVEIAKVLSFESKVIIMDEP 168
Query: 377 TAAI-DLETDDLIQSTIRS-EFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423
T A+ D ET+ L IR + ++ I+HRL I + D V V G
Sbjct: 169 TDALTDTETESLF-RVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
Score = 31.9 bits (73), Expect = 0.95
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID 381
G +Q + +AR L+ + K+LILDE T +D
Sbjct: 399 GNQQKVAIARGLMTRPKVLILDEPTRGVD 427
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 44.2 bits (105), Expect = 9e-05
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 172 KEYGETPQEA-EWVNDKKPKDEWPEKGE--VEFKDYKVRYREGLELVGIVGRTGAGKSSL 228
K +G+ PQ+A + + K K+E +K V D + REG E+ I+G +G+GKS+L
Sbjct: 8 KIFGKNPQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREG-EIFVIMGLSGSGKSTL 66
Query: 229 TLALFRIIEPADGTIIIDGVDIRTLGLHTLR 259
+ R+IEP G ++IDG DI + LR
Sbjct: 67 LRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
Score = 42.2 bits (100), Expect = 4e-04
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF------AHCTVLTIAH 406
G +Q + LARAL IL++DEA +A+ D LI+ ++ E T++ I H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAFSAL----DPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 407 RLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
L+ + DR+ ++ G +V+ +P ++ N A
Sbjct: 220 DLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPA 253
Score = 41.9 bits (99), Expect = 6e-04
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 539
I+G +G+GKS+L + R+IEP G ++IDG DI + LR
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 43.9 bits (104), Expect = 1e-04
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI-------RSEFAHCTVLTIA 405
GQ Q +CLARAL + K+LILDEA + +DL ++Q+ + + +F + I
Sbjct: 155 GQLQRVCLARALAVEPKLLILDEAVSNLDL----VLQAGVIRLLKKLQQQFGTACLF-IT 209
Query: 406 HRLNTIID-SDRVLVLDKGLVVE 427
H L + RV+V+D G +VE
Sbjct: 210 HDLRLVERFCQRVMVMDNGQIVE 232
Score = 32.0 bits (73), Expect = 0.81
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSR 541
V LS+ V ++GR+G GKS+L L + P+ G + G + L R
Sbjct: 31 VSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRD 90
Query: 542 LTIIPQDP 549
+ ++ QD
Sbjct: 91 IQMVFQDS 98
Score = 31.2 bits (71), Expect = 1.3
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
E V ++GR+G GKS+L L + P+ G + G + L
Sbjct: 39 ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKL 79
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 43.2 bits (103), Expect = 1e-04
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ---STIRSEFAHCTVLTIAHRLN 409
G RQ + LARAL +L+LDE +A+D T + +Q I E TVL + H
Sbjct: 135 GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE-TGKTVLLVTHD-- 191
Query: 410 TIID-----SDRVLVL 420
ID +DRV+VL
Sbjct: 192 --IDEAVFLADRVVVL 205
Score = 39.4 bits (93), Expect = 0.002
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552
V +VG +G GKS+L + + P G +++DG + G + Q L
Sbjct: 33 VALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG-----PDRGYVFQQDALL 85
Score = 35.5 bits (83), Expect = 0.048
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
EG E V +VG +G GKS+L + + P G +++DG +
Sbjct: 28 EEG-EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVT 69
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 43.9 bits (104), Expect = 1e-04
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTI 411
G R+ + +A +L+ + +L LDE T +D T I IR+ T+L H +
Sbjct: 128 GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEA 187
Query: 412 ID-SDRVLVLDKGLVVEFDSPSVL 434
DR+ ++D G ++ +P L
Sbjct: 188 DKLCDRIAIIDHGRIIAEGTPEEL 211
Score = 36.2 bits (84), Expect = 0.037
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 6/98 (6%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V V G +G GAGK++ L ++ P GT + G D+ +R + I
Sbjct: 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-VREPRKVRRSIGI 70
Query: 545 IPQDPVLFSG-TLRLNLDPVGE----SSDEAIWKALEL 577
+PQ + T R NL+ +G DEA +A EL
Sbjct: 71 VPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEEL 108
Score = 35.8 bits (83), Expect = 0.045
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL 262
++KVR EG E+ G +G GAGK++ L ++ P GT + G D+ +R +
Sbjct: 13 NFKVR--EG-EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV-VREPRKVRRSI 68
Query: 263 TIIPQ 267
I+PQ
Sbjct: 69 GIVPQ 73
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 43.5 bits (103), Expect = 1e-04
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNT 410
GQ+Q + +ARAL+ + ++L+ DE TAA+D E I S IR E A T + + H +
Sbjct: 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIR-ELAETGITQVIVTHEVEV 203
Query: 411 I--IDSDRVLVLDKGLVVE 427
S RV+ ++ G +VE
Sbjct: 204 ARKTAS-RVVYMENGHIVE 221
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 43.1 bits (102), Expect = 2e-04
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLAT 271
++G G GKS+L R++ P GT+ + I L L RL ++PQ T
Sbjct: 33 LIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLT 87
Score = 41.2 bits (97), Expect = 9e-04
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV 550
++G G GKS+L R++ P GT+ + I L L RL ++PQ +
Sbjct: 33 LIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHL 86
Score = 37.7 bits (88), Expect = 0.011
Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 8/88 (9%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDL----ETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQRQ LA L + T +++LDE T +D+ E L++ TV+T+ H L
Sbjct: 142 GQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMR---ELNTQGKTVVTVLHDL 198
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLM 435
N D ++VL G V+ +P +M
Sbjct: 199 NQASRYCDHLVVLANGHVMAQGTPEEVM 226
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 43.1 bits (102), Expect = 2e-04
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC---TVLTIAHRL 408
G+++ + +ARAL++ ++LILDE +DL + + + + A +L + H
Sbjct: 174 QGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233
Query: 409 NTIIDS-DRVLVLDKGLVV 426
I L+L +G VV
Sbjct: 234 EEIPPCFTHRLLLKEGEVV 252
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 43.4 bits (103), Expect = 2e-04
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 27/105 (25%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDL--------ETDDLIQSTIRSEFAHCTVLTI 404
GQ+Q + LARAL+ + K+L+LDE +A+D E +L + T + +
Sbjct: 140 GQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL------GITFVYV 193
Query: 405 AHRLNTIID-------SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
H D SDR+ V++ G + + +P + + A+ F
Sbjct: 194 TH------DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRF 232
Score = 39.2 bits (92), Expect = 0.005
Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 26/120 (21%)
Query: 495 VGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV 550
V ++G +G GK++L R+I +P+ G I++DG DI + + + ++ Q
Sbjct: 34 VTLLGPSGCGKTTL----LRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQSYA 87
Query: 551 LFS----------GTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
LF G L++ + +ALEL L R H++S GG+
Sbjct: 88 LFPHMTVEENVAFG-LKVRKKLKKAEIKARVEEALELVGL----EGFADRKPHQLS-GGQ 141
Score = 34.2 bits (79), Expect = 0.19
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 20/71 (28%)
Query: 196 KGEVEFKDYKVRYREGL------------ELVGIVGRTGAGKSSLTLALFRII----EPA 239
K +E ++ + + E V ++G +G GK++L R+I +P+
Sbjct: 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTL----LRMIAGFEQPS 58
Query: 240 DGTIIIDGVDI 250
G I++DG DI
Sbjct: 59 SGEILLDGEDI 69
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 43.1 bits (101), Expect = 2e-04
Identities = 55/224 (24%), Positives = 95/224 (42%), Gaps = 38/224 (16%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDIRTLGLHTLRSRLTIIPQVLAT 271
+ G+VG G GKS+L + L ++ P G ++ G +D GL LR Q +AT
Sbjct: 29 VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR-------QQVAT 81
Query: 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKR 331
+F P + Y I + F+ L+ V + +R
Sbjct: 82 VF----QDP-------EQQIFYTDIDSDIAFS--------------LRNLGVPEAEITRR 116
Query: 332 LESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
++ HF + GQ++ + +A AL+ + + L+LDE TA +D +
Sbjct: 117 VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176
Query: 390 STIRSEFAHCTVLTI-AHRLNTIID-SDRVLVLDKGLVVEFDSP 431
+ IR A + I +H ++ I + SD V VL +G ++ +P
Sbjct: 177 AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAP 220
Score = 39.2 bits (91), Expect = 0.004
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 484 LVGLSVSYAMQ--VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDIRTLGLHTLR 539
L GL++ +++ G+VG G GKS+L + L ++ P G ++ G +D GL LR
Sbjct: 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR 76
Query: 540 SRLTIIPQDP 549
++ + QDP
Sbjct: 77 QQVATVFQDP 86
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 42.6 bits (101), Expect = 2e-04
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
G +Q + +A ALL +LILDE T +D E +LI S TVL +H L
Sbjct: 130 GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQG---ITVLISSHLL 186
Query: 409 NTI-IDSDRVLVLDKGLVVE 427
+ I +DR+ +++KG ++E
Sbjct: 187 SEIQKVADRIGIINKGKLIE 206
Score = 38.0 bits (89), Expect = 0.008
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
E+ G +G GAGK++ + +I+P G I DG
Sbjct: 27 EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY 64
Score = 35.7 bits (83), Expect = 0.034
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
G +G GAGK++ + +I+P G I DG
Sbjct: 29 YGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSY 64
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 42.7 bits (101), Expect = 2e-04
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 34/214 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+VG +G GAGK++ L +++P G ++R GL + R + L I
Sbjct: 48 EIVGFIGPNGAGKTTTLKILSGLLQPTSG-------EVRVAGLVPWKRR----KKFLRRI 96
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
V+ + + + Y + D+ P F L +L L
Sbjct: 97 GVVFGQKTQLWWDLPVIDSFYLLAAIY-----DLPP---ARFKKRLDEL-----SELLDL 143
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
E + +P+ ++GQR +A ALL + +IL LDE T +D+ + I++ +
Sbjct: 144 EELLDTPVRQL-------SLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL 196
Query: 393 RSEFAH--CTVLTIAHRLNTIID-SDRVLVLDKG 423
+ TVL +H + I + RVLV+DKG
Sbjct: 197 KEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 42.8 bits (101), Expect = 2e-04
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+ARAL + ++L++DE T+A+D L+ ++LIQ + T++ + H +
Sbjct: 150 GQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK----DYTIVIVTHNM 205
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
SD+ G +VEF L N
Sbjct: 206 QQASRISDKTAFFLNGEIVEFGDTVDLFTN 235
Score = 29.7 bits (67), Expect = 3.9
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
Query: 497 IVGRTGAGKSSLTLALFR---IIEPA--DGTIIIDGVDI--RTLGLHTLRSRLTIIPQDP 549
++G +G GKS+ L R +I +G +++DG DI + ++ LR R+ ++ Q P
Sbjct: 34 LIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQP 93
Query: 550 VLF 552
F
Sbjct: 94 NPF 96
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 42.2 bits (100), Expect = 2e-04
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTI 411
G+R+ + +A L+ +L LDE T+ +D + + S +R T++ H+ ++
Sbjct: 115 GERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSE 174
Query: 412 IDS--DRVLVLDKGLVV 426
I D++L+L +G V+
Sbjct: 175 IFELFDKLLLLSQGRVI 191
Score = 37.1 bits (87), Expect = 0.013
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 495 VGIVGRTGAGKSSL--TLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552
I+G +GAGKS+L LA R G ++I+G R L + R + +PQD +L
Sbjct: 38 TAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLING---RPLDKRSFRKIIGYVPQDDILH 94
Query: 553 S 553
Sbjct: 95 P 95
Score = 36.0 bits (84), Expect = 0.029
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 213 ELVGIVGRTGAGKSSL--TLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
EL I+G +GAGKS+L LA R G ++I+G R L + R + +PQ
Sbjct: 36 ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLING---RPLDKRSFRKIIGYVPQ 89
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 42.5 bits (101), Expect = 2e-04
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
E +G++GR GAGKS+L L I P GT+ + G
Sbjct: 49 ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG 83
Score = 41.7 bits (99), Expect = 4e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
+G++GR GAGKS+L L I P GT+ + G
Sbjct: 51 IGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG 83
Score = 34.8 bits (81), Expect = 0.073
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 370 ILILDEATAAIDLETDDLIQSTIRSEFAHC-TVLTIAHRLNTIID-SDRVLVLDKGLVVE 427
IL++DE A D + Q +R TV+ ++H ++I DR LVL+KG +
Sbjct: 163 ILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222
Query: 428 FD 429
Sbjct: 223 DG 224
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 42.8 bits (101), Expect = 2e-04
Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 52/213 (24%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E++GI+G G GK++ L +++P +G I I+ + + + +L++I
Sbjct: 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSI 85
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
Y+ P F TE KPL I R++ L
Sbjct: 86 TKDFYTHPYFK-------------------TEIAKPLQIEQI----------LDREVPEL 116
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
G+ Q + +A L + I +LDE +A +D+E + I
Sbjct: 117 SG------------------GELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI 158
Query: 393 R--SEFAHCTVLTIAHRLNTIID--SDRVLVLD 421
R +E T + H + +ID +DR++V +
Sbjct: 159 RRFAENNEKTAFVVEHDI-IMIDYLADRLIVFE 190
Score = 31.2 bits (71), Expect = 1.2
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
+GI+G G GK++ L +++P +G I I+ +
Sbjct: 28 IGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTV 63
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 42.7 bits (100), Expect = 3e-04
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARAL +IL+ DE T+A+D I+ I T+L + H +
Sbjct: 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAA 224
Query: 413 D-SDRVLVLDKGLVVEF---DSPSVLMKNKAS 440
SD + G ++EF D+ + KNK +
Sbjct: 225 RVSDYTAYMYMGELIEFGATDTIFIKPKNKQT 256
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 41.2 bits (96), Expect = 3e-04
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 15/117 (12%)
Query: 321 FYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAI 380
Y+ L+ + I + +G + R + A A K +LILDE T+ +
Sbjct: 34 IYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLAL--ALARKLKPDVLILDEITSLL 91
Query: 381 DLETDDLIQSTIRS-------EFAHCTVLTIAHRLNTIID------SDRVLVLDKGL 424
D E + L+ + TV+ + + DR +VL L
Sbjct: 92 DAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
Score = 33.9 bits (77), Expect = 0.079
Identities = 13/60 (21%), Positives = 24/60 (40%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ IVG G+GK++L AL R + P G +I + + + + +
Sbjct: 5 ILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGE 64
Score = 33.9 bits (77), Expect = 0.082
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E++ IVG G+GK++L AL R + P G +I + + + + + +
Sbjct: 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGS 62
Query: 273 FV 274
Sbjct: 63 GE 64
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 42.6 bits (100), Expect = 3e-04
Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 45/235 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLAT 271
E+V ++G GAGK++L L G I+ DG DI +R + I+P+
Sbjct: 32 EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPE---- 87
Query: 272 IFVICYSTPVFIFVIVPVSVLY--FFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
VF + V ++ FF + F ++ Y R
Sbjct: 88 ------GRRVFSRMTVEENLAMGGFFAER-------------DQFQERIKWVYELFPRLH 128
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAA----IDLETD 385
+R + R+ T++G G++Q++ + RAL+ + ++L+LDE + I +
Sbjct: 129 ER--RIQRA-------GTMSG--GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIF 177
Query: 386 DLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
D I+ +R + T+ + N + +DR VL+ G VV D+ L+ N+A
Sbjct: 178 DTIEQ-LREQ--GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEA 229
Score = 30.6 bits (69), Expect = 1.7
Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLT 543
V L ++ V ++G GAGK++L L G I+ DG DI +R +
Sbjct: 24 VSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83
Query: 544 IIPQDPVLFS 553
I+P+ +FS
Sbjct: 84 IVPEGRRVFS 93
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 43.1 bits (102), Expect = 3e-04
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNT 410
GQR LA ALL K+L LDE T +D+ I+ ++ TVL H +
Sbjct: 160 GQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDD 219
Query: 411 IID-SDRVLVLDKGLVVEFDSP 431
I DRVL++D+G +V FD
Sbjct: 220 IATLCDRVLLIDQGQLV-FDGT 240
Score = 31.2 bits (71), Expect = 1.7
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
E+VG +G GAGKS+ L ++ P G + ++G D
Sbjct: 51 EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
Score = 30.0 bits (68), Expect = 4.0
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 529
VG +G GAGKS+ L ++ P G + ++G D
Sbjct: 53 VGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 43.1 bits (102), Expect = 3e-04
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 259
EG E+ I+G +G+GKS+L L R+IEP G I++DG DI L LR
Sbjct: 52 EEG-EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
Score = 43.1 bits (102), Expect = 3e-04
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 539
I+G +G+GKS+L L R+IEP G I++DG DI L LR
Sbjct: 59 IMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
Score = 40.4 bits (95), Expect = 0.002
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 327 RQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDD 386
R L+ LE V + ++G G +Q + LARAL IL++DEA +A+ D
Sbjct: 144 RALEALELVGLEGYADKYPNELSG--GMQQRVGLARALANDPDILLMDEAFSAL----DP 197
Query: 387 LIQSTIRSEFA------HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
LI++ ++ E T++ I H L+ + DR+ ++ G +V+ +P ++ N A
Sbjct: 198 LIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA 257
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 42.5 bits (100), Expect = 3e-04
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+AR L KI++LDE T+A+D + I+ T+ T+L + +
Sbjct: 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
Query: 413 D-SDRVLVLDKGLVVEFDS 430
SDR G ++E++
Sbjct: 212 RISDRTGFFLDGDLIEYND 230
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 40.9 bits (97), Expect = 3e-04
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH-R--LN 409
G++ + LA+ LL +L+LDE T +DLE+ + ++ ++ E+ TV+ ++H R L+
Sbjct: 74 GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK-EY-PGTVILVSHDRYFLD 131
Query: 410 TIIDSDRVLVLDKG 423
+ +++ L+ G
Sbjct: 132 QVA--TKIIELEDG 143
Score = 31.3 bits (72), Expect = 0.61
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246
+G+VGR GAGKS+L + +EP +G +
Sbjct: 29 IGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Score = 31.3 bits (72), Expect = 0.61
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIID 526
+G+VGR GAGKS+L + +EP +G +
Sbjct: 29 IGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 42.1 bits (99), Expect = 4e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID 381
GQRQ + +ARAL K KIL++DE TA ID
Sbjct: 153 GQRQRLVIARALAMKPKILLMDEPTANID 181
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 41.9 bits (98), Expect = 4e-04
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 8/64 (12%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQS-TIRSEFAHCTVLTIAHR 407
GQ+Q +C+ARAL K K+L++DE +D ++ + LIQS +RSE T++ ++H
Sbjct: 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSEL---TMVIVSHN 210
Query: 408 LNTI 411
L+ +
Sbjct: 211 LHQV 214
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 42.4 bits (100), Expect = 5e-04
Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 49/233 (21%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEP---ADGTIIIDGVDIRTL---GLHTLRSRLTIIP 266
E +GIVG +G+GKS AL ++ G+ +G +I L L+ LR+
Sbjct: 43 ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRA------ 96
Query: 267 QVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS 326
+ ++ IF P++ L +++V E L++ S + F +
Sbjct: 97 EQISMIFQD------------PMTSLNPYMRVGEQLME---VLMLHKGMSKAEAF-EESV 140
Query: 327 RQL---KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
R L K E+ R +Y H +G G RQ + +A ALL + K+LI DE T A+D+
Sbjct: 141 RMLDAVKMPEARKRMKMYPH---EFSG--GMRQRVMIAMALLCRPKLLIADEPTTALDVT 195
Query: 384 TDDLIQSTI-------RSEFAHCTVLTIAHRLNTIIDS-DRVLVLDKGLVVEF 428
+Q+ I + EF + ++ I H L + D+VLV+ G +E+
Sbjct: 196 ----VQAQIMTLLNELKREF-NTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243
Score = 30.8 bits (70), Expect = 2.1
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEP---ADGTIIIDGVDIRTL---GLHTLRS-RLTIIPQD 548
GIVG +G+GKS AL ++ G+ +G +I L L+ LR+ ++++I QD
Sbjct: 46 GIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQD 105
Query: 549 P 549
P
Sbjct: 106 P 106
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 42.1 bits (99), Expect = 5e-04
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDIRTLGLHTLRSRLTIIPQDP--VLF 552
I+G GAGKS+L L I++P+ G I+ DG +D GL LR + ++ QDP LF
Sbjct: 37 ILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96
Query: 553 SGTL 556
S ++
Sbjct: 97 SASV 100
Score = 37.1 bits (86), Expect = 0.017
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 17/118 (14%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ++ + +A L+ + K+L+LDE TA +D E L+ + T++ H +
Sbjct: 145 GQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKE--LGLTIIIATHDI 202
Query: 409 NTI-IDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLI 465
+ + + D V V+ +G V+ +P + K M + L RL +G+L+
Sbjct: 203 DIVPLYCDNVFVMKEGRVILQGNPKEVFAEK-----EMLRKVNL-----RLPRIGHLM 250
Score = 36.7 bits (85), Expect = 0.024
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDIRTLGLHTLRSRLTIIPQ 267
E+ I+G GAGKS+L L I++P+ G I+ DG +D GL LR + ++ Q
Sbjct: 33 EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQ 89
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 41.9 bits (98), Expect = 5e-04
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+AR L K +L+LDE +A+D ++ I+ I +++ + H + +
Sbjct: 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQAL 227
Query: 413 D-SDRVLVLDKGLVVEFD 429
SDR G +VE+D
Sbjct: 228 RVSDRTAFFLNGDLVEYD 245
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 42.0 bits (99), Expect = 5e-04
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARA+ K IL++DE +A+D + ++ T+ + T++ + H +
Sbjct: 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAA 226
Query: 413 D-SDRVLVLDKGLVVEFDSPSVLMKN 437
SD G ++E+D + N
Sbjct: 227 RASDYTAFFYLGDLIEYDKTRNIFTN 252
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 41.6 bits (98), Expect = 6e-04
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 199 VEFKDYKVRYREGL-------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
+E +D K Y +G E+V ++G GAGKS+L L I++P G ++I
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI 61
Query: 246 DGVDIR 251
G I+
Sbjct: 62 KGEPIK 67
Score = 40.8 bits (96), Expect = 0.001
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQDP 549
V ++G GAGKS+L L I++P G ++I G I+ L +R + I+ Q+P
Sbjct: 31 VALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNP 87
Score = 28.5 bits (64), Expect = 9.6
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID 381
GQ++ + +A L K +I++LDE T+ +D
Sbjct: 141 GQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 41.2 bits (97), Expect = 6e-04
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ + G G GK++L L ++ P G + +G + R+ L + +
Sbjct: 29 LQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL 88
Query: 555 TLRLNLD---PVGESSDEAIWKALELAHLNTFVSNLPAR 590
+ NL + + I AL L F +LPA
Sbjct: 89 SALENLHFWAAIHGGAQRTIEDALAAVGLTGF-EDLPAA 126
Score = 37.7 bits (88), Expect = 0.007
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC-----TVLTIAHR 407
GQ++ + LAR L + + ILDE T A+D L+ +R AH +LT
Sbjct: 131 GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLR---AHLARGGIVLLTTHQD 187
Query: 408 LNT 410
L
Sbjct: 188 LGL 190
Score = 32.3 bits (74), Expect = 0.39
Identities = 11/48 (22%), Positives = 21/48 (43%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRS 260
E + + G G GK++L L ++ P G + +G + R+
Sbjct: 27 EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRN 74
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 41.7 bits (98), Expect = 6e-04
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 10/94 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+ARA+ +++++DE +A+D + +DLI+ + E+ TV+ + H +
Sbjct: 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEE-LAEEY---TVVIVTHNM 239
Query: 409 NTIID-SDRVLV-LDKGLVVEFDSPSVLMKNKAS 440
SD+ V L G +VEFD + +N S
Sbjct: 240 QQAARISDKTAVFLTGGELVEFDDTDKIFENPES 273
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 41.4 bits (98), Expect = 6e-04
Identities = 57/230 (24%), Positives = 89/230 (38%), Gaps = 50/230 (21%)
Query: 213 ELVGIVGRTGAGKSSLTLAL--FRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLA 270
E+ I+G G+GKS+L + E +G I+ DG DI L R+R I LA
Sbjct: 31 EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE-RARAGIF---LA 86
Query: 271 TIFVICYSTPVFIFVIVP-VSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
+ PV I P V+ F N +R +
Sbjct: 87 ------FQYPVEI----PGVTNSDFLRA-----------------AMNARRGARGILPEF 119
Query: 330 KR-----LESVSRSPIYSH--FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDL 382
+ E + + E +G G+++ + + LL + K+ ILDE + +D+
Sbjct: 120 IKELKEKAELLGLDEEFLERYVNEGFSG--GEKKRNEILQLLLLEPKLAILDEPDSGLDI 177
Query: 383 ETDDLIQSTI---RSEFAHCTVLTIAH--RLNTIIDSDRVLVLDKGLVVE 427
+ ++ I R E VL I H RL I D+V VL G +V+
Sbjct: 178 DALKIVAEGINALREE--GRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225
Score = 37.2 bits (87), Expect = 0.015
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLAL--FRIIEPADGTIIIDGVDIRTLGLHTLRSR- 541
V L+V I+G G+GKS+L + E +G I+ DG DI L R+R
Sbjct: 23 VNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE-RARA 81
Query: 542 -LTIIPQDPVLFSG 554
+ + Q PV G
Sbjct: 82 GIFLAFQYPVEIPG 95
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 41.5 bits (97), Expect = 6e-04
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+ARAL K K+L++DE +A+D ++ ++LI S +RSE T+ + H +
Sbjct: 154 GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHS-LRSEL---TIAIVTHNM 209
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 41.6 bits (98), Expect = 7e-04
Identities = 46/246 (18%), Positives = 97/246 (39%), Gaps = 68/246 (27%)
Query: 201 FKDYKV------RYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL- 253
F D K G E+ G++G GAGK++ + ++EP +G I +G +
Sbjct: 12 FGDKKAVDNISFEVPPG-EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI 70
Query: 254 -----------GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIF 302
GL+ ++T+ Q+ + ++ +
Sbjct: 71 KNRIGYLPEERGLY---PKMTVEDQLK------------------------YLAELKGMP 103
Query: 303 TEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLAR 362
+++ + L+R + + K+++ +S+ G +Q I
Sbjct: 104 KAEIQKKLQAW----LERLEIVGKKT-KKIKELSK---------------GNQQKIQFIS 143
Query: 363 ALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIID-SDRVLVL 420
A++ + ++LILDE + +D +L++ I T++ +HR+ + + DR+L+L
Sbjct: 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLML 203
Query: 421 DKGLVV 426
KG V
Sbjct: 204 KKGQTV 209
Score = 35.0 bits (81), Expect = 0.088
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532
G++G GAGK++ + ++EP +G I +G +
Sbjct: 32 GLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ 68
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 41.6 bits (98), Expect = 7e-04
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS---TIRSEFAHCTVLTIAHRLN 409
G++Q + + RALL ++L++DE A++DL I +R E + +L ++H L+
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLD 190
Query: 410 TIID-SDRVLVLDKGLVVEFD 429
++ +DRV+VL+ G V
Sbjct: 191 EVLRLADRVVVLENGKVKASG 211
Score = 31.5 bits (72), Expect = 1.3
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 17/113 (15%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDG---VDI-RTLGLHTLRSRLTIIPQDPVLF 552
+ G +G+GK+SL + + P +G I ++G VD + + L + R+ + QD LF
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLF 88
Query: 553 -----SGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
G LR + + + + L + HL + P L GGE
Sbjct: 89 PHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHL---LDRYPGTLS-----GGE 133
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 41.4 bits (97), Expect = 8e-04
Identities = 53/229 (23%), Positives = 102/229 (44%), Gaps = 55/229 (24%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
K+ ++ +G E++ I G TG+GK+SL + + +EP++G I H+ R
Sbjct: 54 KNINLKIEKG-EMLAITGSTGSGKTSLLMLILGELEPSEGKI-----------KHSGR-- 99
Query: 262 LTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF 321
I +S+ Q S I +K II + R+
Sbjct: 100 -------------ISFSS-----------------QFSWIMPGTIKENIIFGVSYDEYRY 129
Query: 322 Y-VATSRQLKRLESVSRSP-----IYSHFGETVTGNVGQRQLICLARALLRKTKILILDE 375
V + QL+ E +++ P + G T++G GQR I LARA+ + + +LD
Sbjct: 130 KSVVKACQLE--EDITKFPEKDNTVLGEGGITLSG--GQRARISLARAVYKDADLYLLDS 185
Query: 376 ATAAIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
+D+ T+ ++ +S + A+ T + + ++ + +D++L+L +G
Sbjct: 186 PFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
Score = 36.8 bits (85), Expect = 0.024
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 15/109 (13%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ I G TG+GK+SL + + +EP++G I G R++ Q + G
Sbjct: 66 LAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFSSQFSWIMPG 112
Query: 555 TLRLNLDPVGESSDEAIWKALELA-HLNTFVSNLPARLQHEVSEGGENL 602
T++ N+ G S DE +K++ A L ++ P + + EGG L
Sbjct: 113 TIKENI-IFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITL 160
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 41.1 bits (96), Expect = 9e-04
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+AR L K +++LDE T+A+D + I++ + T++ + H ++
Sbjct: 152 GQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQAS 211
Query: 413 D-SDRVLVLDKGLVVEF 428
SD+ G ++EF
Sbjct: 212 RISDKTAFFLTGNLIEF 228
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 40.7 bits (96), Expect = 0.001
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 489 VSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSR 541
VS+ + G + G +GAGKS+L ++ P G I+++G D+ L + LR +
Sbjct: 21 VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80
Query: 542 LTIIPQD 548
+ ++ QD
Sbjct: 81 IGVVFQD 87
Score = 40.7 bits (96), Expect = 0.001
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
E V + G +GAGKS+L ++ P G I+++G D+ L
Sbjct: 29 EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRL 69
Score = 38.7 bits (91), Expect = 0.004
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET-DDLIQSTIRSEFAHCTVLTIAHRLNTI 411
G++Q + +ARA++ + +L+ DE T +D + ++++ TVL H L +
Sbjct: 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200
Query: 412 IDSD-RVLVLDKGLVVEFDSPSV 433
RVL L+ G +V +S V
Sbjct: 201 NRMRHRVLALEDGRLVRDESRGV 223
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 40.8 bits (95), Expect = 0.001
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARA+ +L++DE +A+D + ++ I T++ + H +
Sbjct: 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAA 209
Query: 413 D-SDRVLVLDKGLVVEFDSPSVLMKN 437
SD+ G +VE+D + N
Sbjct: 210 RVSDKTAFFYMGEMVEYDDTKKIFTN 235
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 41.2 bits (97), Expect = 0.001
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD----DLIQSTIRSEFAHCTVLTIAHRL 408
GQ Q I +ARAL+ + K++I DE +A+D+ +L+Q ++ E +++ IAH L
Sbjct: 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQ-LQREMG-LSLIFIAHDL 222
Query: 409 NTIID-SDRVLVLDKGLVVE 427
+ SDRVLV+ G VE
Sbjct: 223 AVVKHISDRVLVMYLGHAVE 242
Score = 40.1 bits (94), Expect = 0.002
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQDP 549
G+VG +G GKS+ A+ +++ DG + G D+ + +RS + +I QDP
Sbjct: 51 GVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP 107
Score = 38.1 bits (89), Expect = 0.009
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 7/88 (7%)
Query: 186 DKKPKDEWPEKGEVEFK---DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGT 242
D K +W + K +R EG E +G+VG +G GKS+ A+ +++ DG
Sbjct: 19 DIKDGKQWFWQPPKTLKAVDGVTLRLYEG-ETLGVVGESGCGKSTFARAIIGLVKATDGE 77
Query: 243 IIIDGVDIRTLG---LHTLRSRLTIIPQ 267
+ G D+ + +RS + +I Q
Sbjct: 78 VAWLGKDLLGMKDDEWRAVRSDIQMIFQ 105
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 40.2 bits (95), Expect = 0.001
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
GQ+Q + +ARAL+ + K+L+LDE T I I IR +L + L+
Sbjct: 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF 194
Query: 411 IID-SDRVLVLDKGLVVE 427
+ +DR V+++G VV
Sbjct: 195 ARELADRYYVMERGRVVA 212
Score = 39.4 bits (93), Expect = 0.003
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI--IPQ 267
E+ ++GR G GK++L L ++ G+I +DG DI L H R+R I +PQ
Sbjct: 27 EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RARAGIAYVPQ 82
Score = 37.9 bits (89), Expect = 0.007
Identities = 23/65 (35%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V L V ++GR G GK++L L ++ G+I +DG DI L H R+R I
Sbjct: 19 VSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RARAGI 77
Query: 545 --IPQ 547
+PQ
Sbjct: 78 AYVPQ 82
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 40.6 bits (95), Expect = 0.001
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+AR + + ++++DE T+A+D I+ + + T++ + H +
Sbjct: 149 GQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQAR 208
Query: 413 D-SDRVLVLDKGLVVEFDSPSVLMKN 437
SDR G +VE D V+ N
Sbjct: 209 RISDRTAFFLMGELVEHDDTQVIFSN 234
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 41.5 bits (98), Expect = 0.001
Identities = 58/251 (23%), Positives = 100/251 (39%), Gaps = 67/251 (26%)
Query: 187 KKPKDEWPEKGEVEFKDYKVRY------------REGLELVGIVGRTGAGKSSLTLALFR 234
K P+D+ VE+ D K Y +G E++GI+G G GK++ L
Sbjct: 331 KPPRDDKARDTLVEYPDLKKTYGDFKLEVEEGEIYDG-EVIGILGPNGIGKTTFVKLLAG 389
Query: 235 IIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYF 294
+I+P +G D++ ++ PQ ++ + + + + +
Sbjct: 390 VIKPDEG----SEEDLK----------VSYKPQYISPDYDG--TVEDLLRSAIRSAFG-- 431
Query: 295 FIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354
S TE VKPL NL+ R + L G+
Sbjct: 432 ---SSYFKTEIVKPL-------NLEDLL---ERPVDELSG------------------GE 460
Query: 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNTII 412
Q + +A AL R+ + +LDE +A +D+E ++ IR E T L + H + +I
Sbjct: 461 LQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMI 519
Query: 413 D--SDRVLVLD 421
D SDR++V +
Sbjct: 520 DYVSDRLIVFE 530
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 40.7 bits (95), Expect = 0.001
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARAL +L++DE T+A+D + I+ I T++ + H +
Sbjct: 159 GQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAA 218
Query: 413 D-SDRVLVLDKGLVVEFDSPSVLMKN 437
SD+ G +VE + + + N
Sbjct: 219 RVSDQTAFFYMGELVECNDTNKMFSN 244
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 40.6 bits (95), Expect = 0.001
Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+AR L + ++++DE T+A+D L+ ++L+Q ++ ++ +++ + H +
Sbjct: 171 GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE-LKKDY---SIIIVTHNM 226
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
SD+ G V E+D + N +
Sbjct: 227 QQAARISDKTAFFLNGYVNEYDDTDKIFSNPS 258
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 40.4 bits (95), Expect = 0.001
Identities = 25/75 (33%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID-LETDDLIQ--STIRSEFAHCTVLTIAHRLN 409
GQ++ + +AR ++ + +IL+LDE A ++ ET +L + + +R+E TVL I H +
Sbjct: 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHN-VTVLLIEHDMK 215
Query: 410 TIID-SDRVLVLDKG 423
++ SDR+ V+++G
Sbjct: 216 LVMGISDRIYVVNQG 230
Score = 28.4 bits (64), Expect = 9.8
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH 256
E+V ++G GAGK+++ L +P GTI++ G I L H
Sbjct: 32 EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGH 75
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 40.5 bits (94), Expect = 0.002
Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 47/229 (20%)
Query: 216 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275
++G TG+GKS+L L +++P +G + + + + + S+ I V + V+
Sbjct: 36 ALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV------SSTSKQKEIKPVRKKVGVV 89
Query: 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV-KPLIITPFCSNLQRFYVATSRQLK---- 330
F S +F E V K + P Q F + + K
Sbjct: 90 ------------------FQFPESQLFEETVLKDVAFGP-----QNFGIPKEKAEKIAAE 126
Query: 331 RLESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEATAAID----LET 384
+LE V + F E + GQ + + +A L + ++L+LDE TA +D +E
Sbjct: 127 KLEMVGLA---DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEM 183
Query: 385 DDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432
L +S +S TV+ + H ++ + D +D V +L+KG ++ +PS
Sbjct: 184 MQLFESIHQS---GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229
Score = 30.5 bits (68), Expect = 2.6
Identities = 15/69 (21%), Positives = 35/69 (50%), Gaps = 4/69 (5%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG----LHTLRS 540
+ L V ++G TG+GKS+L L +++P +G + + + + + + +R
Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84
Query: 541 RLTIIPQDP 549
++ ++ Q P
Sbjct: 85 KVGVVFQFP 93
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 40.6 bits (96), Expect = 0.002
Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 83/259 (32%)
Query: 187 KKPKDEWPEKGEVEFKDYKVRY------------REGLELVGIVGRTGAGKSSLTLALFR 234
+ P+DE + VE+ D + EG E++GIVG G GK++ L
Sbjct: 329 RPPRDESERETLVEYPDLTKKLGDFSLEVEGGEIYEG-EVIGIVGPNGIGKTTFAKLLAG 387
Query: 235 IIEPADGTIIIDGVDIRTLGLHTLRSRLTII--PQVLATIFVICYSTPVFIFVIVPVSVL 292
+++P +G + + L I PQ +I +V
Sbjct: 388 VLKPDEGEVDPE---------------LKISYKPQ--------------YIKPDYDGTVE 418
Query: 293 YFFIQV------SLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGE 346
+ S +E +KPL L+R + +K L
Sbjct: 419 DLLRSITDDLGSSYYKSEIIKPL-------QLERLL---DKNVKDL-------------- 454
Query: 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTI 404
+G G+ Q + +A L R + +LDE +A +D+E + IR +E T L +
Sbjct: 455 --SG--GELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVV 510
Query: 405 AHRLNTIID--SDRVLVLD 421
H + +ID SDR++V +
Sbjct: 511 DHDI-YMIDYISDRLMVFE 528
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 39.9 bits (94), Expect = 0.002
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
+G E VGI+G GAGKS+L + I +P G + + G
Sbjct: 51 YKG-ERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG 88
Score = 38.8 bits (91), Expect = 0.004
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
VGI+G GAGKS+L + I +P G + + G
Sbjct: 56 VGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG 88
Score = 34.5 bits (80), Expect = 0.10
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 18/85 (21%)
Query: 359 CLARALLRKTK--ILILDEATAAIDL--------ETDDLIQSTIRSEFAHCTVLTIAHRL 408
LA ++ + IL+LDE A D ++L++ T++ ++H L
Sbjct: 155 RLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNK-------TIVLVSHDL 207
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPS 432
I DR + L+ G + SP
Sbjct: 208 GAIKQYCDRAIWLEHGQIRMEGSPE 232
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 39.7 bits (93), Expect = 0.003
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ LS+ + ++G GAGKS+L L L I P G + + G ++ +RS++ +
Sbjct: 24 LSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83
Query: 545 IPQDP--VLFSGT 555
+ QDP +FS T
Sbjct: 84 VFQDPDDQVFSST 96
Score = 32.8 bits (75), Expect = 0.41
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 199 VEFKDYKVRYREGLEL-------------VGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
+E +D RY++G + ++G GAGKS+L L L I P G + +
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKV 64
Query: 246 DGVDIRTLGLHTLRSRLTIIPQ 267
G ++ +RS++ ++ Q
Sbjct: 65 MGREVNAENEKWVRSKVGLVFQ 86
Score = 29.3 bits (66), Expect = 5.3
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI-RSEFAHCTVLTIAHRLNTI 411
GQ++ + +A L +++LDE A +D + + + R TV+ H ++
Sbjct: 142 GQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLA 201
Query: 412 ID-SDRVLVLDKGLVVEFDSPSVL 434
+ +D+V+VL +G V+ S+L
Sbjct: 202 AEWADQVIVLKEGRVLAEGDKSLL 225
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 39.6 bits (92), Expect = 0.003
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+AR L K KI++ DE T+A+D + I+ I + T++ + H +
Sbjct: 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAA 217
Query: 413 D-SDRVLVLDKGLVVEFDSPSVLMKN 437
SD G ++EF + N
Sbjct: 218 RISDYTGFFLMGELIEFGQTRQIFHN 243
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 39.0 bits (92), Expect = 0.003
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSL--TLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR- 541
V L++ ++G G+GKS+L T+ E +G I+ G DI L R+R
Sbjct: 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE-ERARL 77
Query: 542 -LTIIPQDPVLFSG 554
+ + Q P G
Sbjct: 78 GIFLAFQYPPEIPG 91
Score = 34.8 bits (81), Expect = 0.067
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 3/54 (5%)
Query: 213 ELVGIVGRTGAGKSSL--TLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 264
E+ ++G G+GKS+L T+ E +G I+ G DI L R+RL I
Sbjct: 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE-ERARLGI 79
Score = 33.7 bits (78), Expect = 0.17
Identities = 26/80 (32%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI---RSEFAHCTVLTIAH--R 407
G+++ + + LL + + ILDE + +D++ L+ I R E +VL I H R
Sbjct: 108 GEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREE--GKSVLIITHYQR 165
Query: 408 LNTIIDSDRVLVLDKGLVVE 427
L I DRV VL G +V+
Sbjct: 166 LLDYIKPDRVHVLYDGRIVK 185
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 39.2 bits (92), Expect = 0.003
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID 381
GQRQ + LAR L+R+ IL+LDE +A+D
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALD 161
Score = 33.0 bits (76), Expect = 0.30
Identities = 36/121 (29%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRL 542
L+V +V I+G +GAGKS+L + + PA G++ ++G D HT R +
Sbjct: 20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD------HTTTPPSRRPV 73
Query: 543 TIIPQDPVLFSG-TLRLN----LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE 597
+++ Q+ LFS T+ N L+P G + A + L + +L ARL ++S
Sbjct: 74 SMLFQENNLFSHLTVAQNIGLGLNP-GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSG 132
Query: 598 G 598
G
Sbjct: 133 G 133
Score = 31.1 bits (71), Expect = 1.3
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
E V I+G +GAGKS+L + + PA G++ ++G D
Sbjct: 26 ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD 62
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 39.5 bits (93), Expect = 0.004
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDL----ETDDLIQSTIRSEFAHCTVLTIAHRL 408
G++Q + + RALL ++L++DE A++DL E ++ + + +L ++H L
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERL--AREINIPILYVSHSL 189
Query: 409 NTIID-SDRVLVLDKGLVVEFDS 430
+ I+ +DRV+VL++G V F
Sbjct: 190 DEILRLADRVVVLEQGKVKAFGP 212
Score = 29.1 bits (66), Expect = 7.5
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
I GR+GAGK+SL A+ + P G I+++G R L
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNG---RVL 62
Score = 29.1 bits (66), Expect = 7.5
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533
I GR+GAGK+SL A+ + P G I+++G R L
Sbjct: 29 IFGRSGAGKTSLINAISGLTRPQKGRIVLNG---RVL 62
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 39.5 bits (93), Expect = 0.004
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V L+++ ++G+VGR GAGKS+L L +EP G + R+
Sbjct: 22 VSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGY 70
Query: 545 IPQDPVLFSG 554
+ Q+P L
Sbjct: 71 LSQEPPLDPE 80
Score = 38.4 bits (90), Expect = 0.009
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
+G+VGR GAGKS+L L +EP G +
Sbjct: 32 IGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64
Score = 37.6 bits (88), Expect = 0.016
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 17/75 (22%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET----DDLIQSTIRSEFAHCTVLTIAH-R 407
G R+ + LARALL + +L+LDE T +DLE+ +D ++ TV+ ++H R
Sbjct: 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY------PGTVIVVSHDR 210
Query: 408 --LN----TIIDSDR 416
L+ I++ DR
Sbjct: 211 YFLDNVATHILELDR 225
Score = 37.2 bits (87), Expect = 0.021
Identities = 52/261 (19%), Positives = 96/261 (36%), Gaps = 74/261 (28%)
Query: 199 VEFKDYKVRYREGLEL-------------VGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
+EF++ Y G L + IVG GAGKS+L L + P GT+ +
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381
Query: 246 -DGVDIRTLGLH--TLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIF 302
+ V I H L T++ ++
Sbjct: 382 GETVKIGYFDQHRDELDPDKTVLEEL---------------------------------- 407
Query: 303 TEDVKPLII-TPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLA 361
+ P + L RF Q K + +S G G++ + LA
Sbjct: 408 -SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLS-------------G--GEKARLLLA 451
Query: 362 RALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH-R--LNTIIDSDRVL 418
+ LL+ +L+LDE T +D+E+ + ++ + +F TVL ++H R L+ + + R+
Sbjct: 452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALL-DFEG-TVLLVSHDRYFLDRV--ATRIW 507
Query: 419 VLDKGLVVEFDSPSVLMKNKA 439
+++ + ++ K
Sbjct: 508 LVEDKVEEFEGGYEDYLEQKK 528
Score = 30.3 bits (69), Expect = 3.1
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIII 525
+ IVG GAGKS+L L + P GT+ +
Sbjct: 351 IAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 38.6 bits (90), Expect = 0.004
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 29/177 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E++ IVG +G+GKS+L L + P G +I +G + L + ++ + Q L I
Sbjct: 36 EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKL---SSAAKAELRNQKLGFI 92
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVK-PLIITPFCSNLQRFYVATSRQLKR 331
+ + P F + E+V PL+I ++ SR L+
Sbjct: 93 YQFHHLLPDFTAL------------------ENVAMPLLIGK-----KKPAEINSRALEM 129
Query: 332 LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
L +V +H ++G G+RQ + +ARAL+ ++++ DE T +D D I
Sbjct: 130 LAAVGLEHRANHRPSELSG--GERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184
Score = 32.1 bits (73), Expect = 0.57
Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 489 VSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533
VS+++ G IVG +G+GKS+L L + P G +I +G + L
Sbjct: 28 VSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKL 76
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 38.7 bits (90), Expect = 0.005
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 7/80 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD----DLIQSTIRSEFAHCTVLTIAHRL 408
G +Q + +AR L+ + +++ +DE T +D+ DL++ +R V+ + H L
Sbjct: 152 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRD--LGLAVIIVTHDL 209
Query: 409 NTI-IDSDRVLVLDKGLVVE 427
+ + R+LV+ +G VVE
Sbjct: 210 GVARLLAQRLLVMQQGRVVE 229
Score = 31.3 bits (71), Expect = 1.2
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRL 262
E++GIVG +G+GKS+L L + P GT L L+ L R RL
Sbjct: 30 EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRL 83
Score = 29.0 bits (65), Expect = 5.6
Identities = 26/83 (31%), Positives = 34/83 (40%), Gaps = 9/83 (10%)
Query: 469 AALLAVLSKETLNAGLVGLS-VSYAMQ----VGIVGRTGAGKSSLTLALFRIIEPADGTI 523
LL V G G VS+ + +GIVG +G+GKS+L L + P GT
Sbjct: 1 KPLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA 60
Query: 524 IIDGVDIRTLGLHTL----RSRL 542
L L+ L R RL
Sbjct: 61 TYIMRSGAELELYQLSEAERRRL 83
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 38.8 bits (90), Expect = 0.005
Identities = 52/200 (26%), Positives = 89/200 (44%), Gaps = 39/200 (19%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276
I+G G GKS+L L R++ PA G + +DG I+ + R+ ++ Q
Sbjct: 38 IIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNA------- 90
Query: 277 YSTPVFIFVIVPVSVLYFFIQVSLIFT----EDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+TP I V V+ + Q +FT ED + V + Q +
Sbjct: 91 -TTPGDITVQELVARGRYPHQP--LFTRWRKEDEEA--------------VTKAMQATGI 133
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD-DLIQ-- 389
++ + +T++G GQRQ +A L ++T I++LDE T +D+ DL++
Sbjct: 134 THLADQSV-----DTLSG--GQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELL 186
Query: 390 STIRSEFAHCTVLTIAHRLN 409
S + E + T+ + H LN
Sbjct: 187 SELNREKGY-TLAAVLHDLN 205
Score = 36.1 bits (83), Expect = 0.040
Identities = 17/52 (32%), Positives = 29/52 (55%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQD 548
I+G G GKS+L L R++ PA G + +DG I+ + R+ ++ Q+
Sbjct: 38 IIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQN 89
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 38.5 bits (89), Expect = 0.006
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN 409
GQ+Q +C+ARAL + +IL++DE T+A+D + I+ + T++ + H ++
Sbjct: 152 GQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMH 208
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 38.4 bits (90), Expect = 0.006
Identities = 18/52 (34%), Positives = 32/52 (61%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQD 548
I+G GAGKS+L + R+++ G I IDG+++ + L +L+I+ Q+
Sbjct: 32 IIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQE 83
Score = 38.1 bits (89), Expect = 0.009
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
I+G GAGKS+L + R+++ G I IDG+++ + L +L+I+ Q
Sbjct: 32 IIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQ 82
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 38.9 bits (91), Expect = 0.006
Identities = 26/93 (27%), Positives = 49/93 (52%), Gaps = 3/93 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR---SEFAHCTVLTIAHRLN 409
GQ+Q + LARAL + +IL+LDE A+D + ++ +R E +V +
Sbjct: 140 GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEE 199
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ +DRV+V+ +G + + +P + + A+ F
Sbjct: 200 AMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 39.2 bits (91), Expect = 0.007
Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 491 YAMQV-GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549
Y Q+ +G GAGK++ L ++ P GT+++ G DI T L +R L + PQ
Sbjct: 954 YENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHN 1012
Query: 550 VLF 552
+LF
Sbjct: 1013 ILF 1015
Score = 36.5 bits (84), Expect = 0.053
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
++ +G GAGK++ L ++ P GT+++ G DI T L +R L + PQ
Sbjct: 957 QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQ 1010
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 38.3 bits (89), Expect = 0.009
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+AR L +++++DE +A+D I+ I TV+ + H +
Sbjct: 204 GQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAA 263
Query: 413 D-SDRVLV-LDKGLVVEFDSPSVLMKNKAS 440
SD+ V L G +VE+D + +N S
Sbjct: 264 RISDQTAVFLTGGELVEYDDTDKIFENPES 293
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 37.5 bits (87), Expect = 0.009
Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 44/220 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVL 269
E+ + G +GAGKS+L + I P+ G I G DI L + LR ++ +I Q
Sbjct: 29 EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD- 87
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS-NLQRFYVATSRQ 328
+ + ++ PLII +++R A +
Sbjct: 88 -----------------------HHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDK 124
Query: 329 LKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
+ L+ PI ++G G++Q + +ARA++ K +L+ DE T +D D L
Sbjct: 125 VGLLDKAKNFPI------QLSG--GEQQRVGIARAVVNKPAVLLADEPTGNLD---DALS 173
Query: 389 QSTIR--SEFAH--CTVLTIAHRLNTIIDSD-RVLVLDKG 423
+ +R EF TVL H + I R+L L G
Sbjct: 174 EGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDG 213
Score = 30.6 bits (69), Expect = 1.8
Identities = 20/55 (36%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQD 548
+ G +GAGKS+L + I P+ G I G DI L + LR ++ +I QD
Sbjct: 33 LTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 38.0 bits (88), Expect = 0.009
Identities = 23/83 (27%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+AR + K ++++DE T+A+D L+ +DL+ ++ E+ T++ + H +
Sbjct: 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLM-VELKKEY---TIVIVTHNM 206
Query: 409 NTIID-SDRVLVLDKGLVVEFDS 430
SD G ++EF+
Sbjct: 207 QQASRVSDYTAFFLMGDLIEFNK 229
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 37.5 bits (87), Expect = 0.010
Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 8/73 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC-----TVLTIAHR 407
GQ++ + LAR LL + ILDE T A+D + HC VLT
Sbjct: 129 GQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMA---GHCARGGMVVLTTHQD 185
Query: 408 LNTIIDSDRVLVL 420
L R L L
Sbjct: 186 LGLSEAGARELDL 198
Score = 29.4 bits (66), Expect = 4.4
Identities = 21/102 (20%), Positives = 43/102 (42%), Gaps = 5/102 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ +++ + + G G+GK++L L + P G ++++G + R L +
Sbjct: 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78
Query: 545 IPQDPVLFSGTLRLNLD---PVGESSDEAIWKALELAHLNTF 583
+ + ++ NL SDE + +AL LN F
Sbjct: 79 GHAPGIKTTLSVLENLRFWHADH--SDEQVEEALARVGLNGF 118
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 37.8 bits (88), Expect = 0.011
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI- 411
G RQ + LA+AL+ K+LILDE T +D I++ I++ T++ H + +
Sbjct: 137 GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE 196
Query: 412 IDSDRVLVLDKGLVV 426
DRV++++KG +V
Sbjct: 197 AICDRVIIINKGKIV 211
Score = 30.9 bits (70), Expect = 1.6
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 488 SVSYAMQ----VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
VS+ Q VG +G GAGKS+ + + P G++ + G D+
Sbjct: 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV 66
Score = 30.9 bits (70), Expect = 2.0
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
+VG +G GAGKS+ + + P G++ + G D+
Sbjct: 29 RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDV 66
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 37.8 bits (88), Expect = 0.011
Identities = 49/230 (21%), Positives = 98/230 (42%), Gaps = 42/230 (18%)
Query: 216 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275
G++G G+GKS+L L R P++G I++D + + ++ +PQ
Sbjct: 41 GLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQ-------- 92
Query: 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT---PFCSNLQRFYVATSRQLKR- 331
Q+ V+ L+ P+ L RF A +++
Sbjct: 93 ---------------------QLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEA 131
Query: 332 LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDL----ETDDL 387
+ V P+ ++++G G+RQ +A + + ++ L+LDE T+A+D+ + L
Sbjct: 132 ISLVGLKPLAHRLVDSLSG--GERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLAL 189
Query: 388 IQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436
+ S+ TV+ + H +N D ++ L G ++ +P+ LM+
Sbjct: 190 VHRL--SQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237
Score = 29.4 bits (66), Expect = 4.6
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
G++G G+GKS+L L R P++G I++D
Sbjct: 41 GLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 37.1 bits (87), Expect = 0.012
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNT 410
GQ++ + LAR L + + ILDE AID + +++ + +LT L
Sbjct: 133 GQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPV 192
Query: 411 IIDSDRVLVLD 421
D R L L
Sbjct: 193 ASDKVRKLRLG 203
Score = 32.1 bits (74), Expect = 0.56
Identities = 33/112 (29%), Positives = 46/112 (41%), Gaps = 29/112 (25%)
Query: 495 VGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRT-----------LGLHT-L 538
V I G GAGK+S L RI+ P G ++ G IR LG +
Sbjct: 30 VQIEGPNGAGKTS----LLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGHQPGI 85
Query: 539 RSRLTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPAR 590
++ LT + + F L G DEA+W+AL L F ++P R
Sbjct: 86 KTELT--ALENLRFYQRLH------GPGDDEALWEALAQVGLAGF-EDVPVR 128
Score = 30.9 bits (71), Expect = 1.3
Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 8/46 (17%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLG 254
ELV I G GAGK+S L RI+ P G ++ G IR
Sbjct: 28 ELVQIEGPNGAGKTS----LLRILAGLARPDAGEVLWQGEPIRRQR 69
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 38.1 bits (89), Expect = 0.012
Identities = 27/93 (29%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI--AH-RLN 409
GQ+Q + LARAL +L+LDE +A+D + +++ IR V TI H +
Sbjct: 138 GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEE 197
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ +DR++V++ G++ + +P + ++ A+ F
Sbjct: 198 ALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230
Score = 29.2 bits (66), Expect = 6.9
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTL 253
E V ++G +G GK++L RII GTI G DI L
Sbjct: 31 EFVCLLGPSGCGKTTL----LRIIAGLERQTAGTIYQGGRDITRL 71
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 37.5 bits (87), Expect = 0.012
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+ARAL + ++L++DE +A+D I+ I A T++ + H +
Sbjct: 153 GQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNM 208
Score = 34.4 bits (79), Expect = 0.11
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 497 IVGRTGAGKSSLTLALFRI-----IEPADGTIIIDGVDI--RTLGLHTLRSRLTIIPQDP 549
++G +G GKS+ L R+ +G I++DG +I + + LR R+ ++ Q P
Sbjct: 37 LIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKP 96
Query: 550 VLFSGTLRLNL 560
F ++ N+
Sbjct: 97 NPFPKSIFENV 107
Score = 31.7 bits (72), Expect = 0.93
Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 7/58 (12%)
Query: 217 IVGRTGAGKSSLTLALFRI-----IEPADGTIIIDGVDI--RTLGLHTLRSRLTIIPQ 267
++G +G GKS+ L R+ +G I++DG +I + + LR R+ ++ Q
Sbjct: 37 LIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQ 94
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 37.4 bits (87), Expect = 0.013
Identities = 31/105 (29%), Positives = 55/105 (52%), Gaps = 14/105 (13%)
Query: 343 HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS---EFAHC 399
H+ ++G GQ+Q + +ARAL K K+++ DE T+A+D E + ++ E
Sbjct: 132 HYPSELSG--GQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTM 189
Query: 400 TVLT----IAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKAS 440
++T A ++ + R++ +DKG + E P VL+KN S
Sbjct: 190 VIVTHEIGFAEKVAS-----RLIFIDKGRIAEDGDPQVLIKNPPS 229
Score = 30.4 bits (69), Expect = 1.9
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
E+V I+G +G+GKS+L + ++ E G +I+DG+ +
Sbjct: 28 EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVN 66
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 37.5 bits (87), Expect = 0.013
Identities = 32/120 (26%), Positives = 54/120 (45%), Gaps = 22/120 (18%)
Query: 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP--VL 551
++ ++G GAGKS+L I++P G+++I G I + +R + ++ Q+P +
Sbjct: 32 RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQI 91
Query: 552 FSGT-----------LRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
FS T L L+ + V A+ L L L R+ H +S GGE
Sbjct: 92 FSPTVEQDIAFGPINLGLDEETVAHRVSSAL-HMLGLEELRD-------RVPHHLS-GGE 142
Score = 35.9 bits (83), Expect = 0.042
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 39/223 (17%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274
+ ++G GAGKS+L I++P G+++I G I + +R + ++
Sbjct: 33 IAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLV--------- 83
Query: 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLI-ITPFCSNLQRFYVATSRQLKRLE 333
F IF+ V+ I P L VA R+
Sbjct: 84 -------------------FQNPDDQIFSPTVEQDIAFGPINLGLDEETVA-----HRVS 119
Query: 334 SVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEATAAIDLE-TDDLIQS 390
S + V ++ G+++ + +A + + ++L+LDE TA +D + +LI
Sbjct: 120 SALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDF 179
Query: 391 TIR-SEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431
E TV+ H+L+ + + +D + V+DKG +V + +
Sbjct: 180 LNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTV 222
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 38.0 bits (89), Expect = 0.013
Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH 406
G+R + LAR L+ + +LILDE T +D+ET +L++ + S TVL ++H
Sbjct: 444 GERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS--YQGTVLLVSH 495
Score = 34.2 bits (79), Expect = 0.23
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 11/55 (20%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549
V +VGR GAGKS+L L + DG II + D+ +RL QDP
Sbjct: 32 VCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ-DLIV-------ARL---QQDP 75
Score = 33.4 bits (77), Expect = 0.38
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246
E V +VGR GAGKS+L L + DG II +
Sbjct: 30 ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE 63
Score = 31.1 bits (71), Expect = 2.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 360 LARALLRKTKILILDEATAAIDLET 384
L RAL+ +L+LDE T +D+ET
Sbjct: 167 LGRALVSNPDVLLLDEPTNHLDIET 191
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 37.4 bits (87), Expect = 0.015
Identities = 18/60 (30%), Positives = 37/60 (61%), Gaps = 8/60 (13%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+ARA+ + +L++DE +A+D L +DLI ++ ++ T++ + H +
Sbjct: 152 GQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE-LKQDY---TIVIVTHNM 207
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 38.0 bits (89), Expect = 0.015
Identities = 27/101 (26%), Positives = 51/101 (50%), Gaps = 8/101 (7%)
Query: 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL 542
G + L++ + ++G G+GKS+L + L + +P G I++DG + R
Sbjct: 340 GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLF 399
Query: 543 TIIPQDPVLFSGTLRLNLDPVGESSDEAI---W-KALELAH 579
+ + D LF +L L P G+ ++ A+ W + L++AH
Sbjct: 400 SAVFTDFHLFD---QL-LGPEGKPANPALVEKWLERLKMAH 436
Score = 33.8 bits (78), Expect = 0.27
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
EL+ ++G G+GKS+L + L + +P G I++DG +
Sbjct: 350 ELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 37.2 bits (86), Expect = 0.018
Identities = 22/75 (29%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTI 411
GQ++ + LARA+ ++ ++++LDE +D++T+ I S +R T+L H L ++
Sbjct: 146 GQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSV 205
Query: 412 IDSDRVLVLDKGLVV 426
+ V+ KG V+
Sbjct: 206 TEFCDYTVMVKGTVL 220
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 37.2 bits (87), Expect = 0.022
Identities = 23/86 (26%), Positives = 49/86 (56%), Gaps = 11/86 (12%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH------CTVLTIAH 406
GQ+Q + +ARA++ K K+L+LDE+ +A+D + ++ +++E T + + H
Sbjct: 148 GQQQRVAIARAVVNKPKVLLLDESLSALDYK----LRKQMQNELKALQRKLGITFVFVTH 203
Query: 407 -RLNTIIDSDRVLVLDKGLVVEFDSP 431
+ + SDR++V+ G + + +P
Sbjct: 204 DQEEALTMSDRIVVMRDGRIEQDGTP 229
Score = 29.9 bits (68), Expect = 4.2
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 8/42 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDI 250
E + ++G +G GK+++ R+I P G I++DG DI
Sbjct: 41 EFLTLLGPSGCGKTTV----LRLIAGFETPDSGRIMLDGQDI 78
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 36.6 bits (85), Expect = 0.022
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 4/91 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNT 410
GQ+Q + +ARAL + ++++ DE T+A+D E + ++ + A T++ + H +
Sbjct: 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQ-DLAEEGRTMVVVTHEMGF 214
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKNKAS 440
D S V+ L +G + E P + N S
Sbjct: 215 ARDVSSHVIFLHQGKIEEEGPPEQVFGNPQS 245
Score = 30.9 bits (70), Expect = 1.7
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 19/102 (18%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-------------LHTLRSR 541
+ I+G +G+GKS+ + + +P+ G+I ++G +IR L LR+R
Sbjct: 35 ISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTR 94
Query: 542 LTIIPQDPVLFSG-TLRLNL--DPV---GESSDEAIWKALEL 577
L ++ Q L+S T+ N+ PV G S EAI +A +
Sbjct: 95 LGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKY 136
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 36.4 bits (85), Expect = 0.023
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR 393
GQ++ + LAR L+ I ILDE TAA+D L IR
Sbjct: 131 GQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIR 171
Score = 35.2 bits (82), Expect = 0.052
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
E + + G G+GK++L + ++ PA GTI +DG DI
Sbjct: 29 EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID 67
Score = 34.1 bits (79), Expect = 0.14
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531
+ G G+GK++L + ++ PA GTI +DG DI
Sbjct: 33 LTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDID 67
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 36.7 bits (85), Expect = 0.027
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLN- 409
G RQ + +ARAL + ++L+LDE A+D T + +Q + + VL I H +
Sbjct: 136 GMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE 195
Query: 410 TIIDSDRVLVLDKG 423
+ + R++VL G
Sbjct: 196 ALFLATRLVVLSPG 209
Score = 34.0 bits (78), Expect = 0.17
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 192 EWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
+ K +D + G ELV ++G +G GK++L + + P+ G+I ++G I
Sbjct: 12 SYEGKPRSALEDVSLTIASG-ELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE 70
Query: 252 TLG 254
G
Sbjct: 71 GPG 73
Score = 31.3 bits (71), Expect = 1.4
Identities = 16/68 (23%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V L+++ V ++G +G GK++L + + P+ G+I ++G I G + +
Sbjct: 24 VSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-----AERGV 78
Query: 545 IPQDPVLF 552
+ Q+ L
Sbjct: 79 VFQNEALL 86
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 36.6 bits (85), Expect = 0.029
Identities = 61/232 (26%), Positives = 99/232 (42%), Gaps = 57/232 (24%)
Query: 218 VGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277
+G TG+GKS++ L + P G++ +D I T S+ I Q+ + +
Sbjct: 39 IGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLI------TSTSKNKDIKQIRKKVGL--- 89
Query: 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDV-KPLIITPFCSNLQRFYV------ATSRQLK 330
VF F P S L F E V K + P Q F V A +R+
Sbjct: 90 ---VFQF---PESQL---------FEETVLKDVAFGP-----QNFGVSQEEAEALAREKL 129
Query: 331 RLESVS-----RSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID---- 381
L +S ++P ++G GQ + + +A L + KIL+LDE TA +D
Sbjct: 130 ALVGISESLFEKNPF------ELSG--GQMRRVAIAGILAMEPKILVLDEPTAGLDPKGR 181
Query: 382 LETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432
E L + +S T++ + H ++ + + +D V VL+KG +V P
Sbjct: 182 KELMTLFKKLHQSGM---TIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230
Score = 29.7 bits (67), Expect = 4.2
Identities = 13/47 (27%), Positives = 23/47 (48%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531
V L++ +G TG+GKS++ L + P G++ +D I
Sbjct: 26 VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLIT 72
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 36.6 bits (84), Expect = 0.030
Identities = 18/64 (28%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404
G ++G GQ+Q +C+ARA+ + ++L++DE T+A+D I+ I +++ +
Sbjct: 223 GNALSG--GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIV 280
Query: 405 AHRL 408
H +
Sbjct: 281 THSM 284
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 37.0 bits (86), Expect = 0.030
Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR 407
G++Q I +AR K + ILDE T+A+ ++ + + R T+ +++HR
Sbjct: 586 GEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE--FGITLFSVSHR 638
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 36.2 bits (83), Expect = 0.034
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 333 ESVSRSPIYSHFGETVTGNV-----GQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
+S+ +S +++ + + N GQ+Q +C+AR L + ++++DE T+A+D +
Sbjct: 129 QSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGK 188
Query: 388 IQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
I+ I + T++ + H + SDR G + E S L N
Sbjct: 189 IEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFN 239
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 35.7 bits (83), Expect = 0.043
Identities = 29/125 (23%), Positives = 52/125 (41%), Gaps = 15/125 (12%)
Query: 313 PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV-------GQRQLICLARALL 365
+ + L+ ++ K+ T G G+R+ + +A LL
Sbjct: 103 TYTAILRLPRKSSDAIRKKRVEDVLL---RDLALTRIGGNLVKGISGGERRRVSIAVQLL 159
Query: 366 RKTKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNTIIDS--DRVLVLD 421
K+LILDE T+ +D T + ST+ + A V+ H+ + + DR+L+L
Sbjct: 160 WDPKVLILDEPTSGLDSFTALNLVSTLS-QLARRNRIVILTIHQPRSDLFRLFDRILLLS 218
Query: 422 KGLVV 426
G +V
Sbjct: 219 SGEIV 223
>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like
protein)-like YfjP subfamily includes several
uncharacterized bacterial GTPases that are similar to
Era. They generally show sequence conservation in the
region between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. Era is
characterized by a distinct derivative of the KH domain
(the pseudo-KH domain) which is located C-terminal to
the GTPase domain.
Length = 140
Score = 34.6 bits (80), Expect = 0.043
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 216 GIVGRTGAGKSSLTLALFR 234
G++G+TGAGKSSL ALF
Sbjct: 1 GLMGKTGAGKSSLCNALFG 19
Score = 34.6 bits (80), Expect = 0.043
Identities = 13/19 (68%), Positives = 16/19 (84%)
Query: 496 GIVGRTGAGKSSLTLALFR 514
G++G+TGAGKSSL ALF
Sbjct: 1 GLMGKTGAGKSSLCNALFG 19
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 36.6 bits (85), Expect = 0.044
Identities = 29/130 (22%), Positives = 58/130 (44%), Gaps = 18/130 (13%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ+Q + +ARAL+ ++++ DE T A+D + + + + + + H TV+ + H
Sbjct: 148 GQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGH-TVIIVTHDPQV 206
Query: 411 IIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAG--------------LAWLAV 456
++RV+ + G +V + P+ N A + A +AW A+
Sbjct: 207 AAQAERVIEIRDGEIVR-NPPAQEKVNVAGGTEPVVNTASGWRQFVSGFREALTMAWRAM 265
Query: 457 RLETVGNLIT 466
+ L+T
Sbjct: 266 AANKMRTLLT 275
Score = 34.3 bits (79), Expect = 0.21
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
E+V IVG +G+GKS+L L + +P GT + G D+ TL
Sbjct: 35 EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATL 75
Score = 32.4 bits (74), Expect = 0.84
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533
+ L + V IVG +G+GKS+L L + +P GT + G D+ TL
Sbjct: 27 ISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATL 75
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 35.7 bits (83), Expect = 0.044
Identities = 13/38 (34%), Positives = 21/38 (55%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
E V ++G +G GK++ + + EP G I I G D+
Sbjct: 27 EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV 64
Score = 34.5 bits (80), Expect = 0.100
Identities = 23/89 (25%), Positives = 43/89 (48%), Gaps = 21/89 (23%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN-TI 411
GQRQ + L RA++R+ K+ ++DE + +D ++ +R+E + RL T
Sbjct: 134 GQRQRVALGRAIVREPKVFLMDEPLSNLDA----KLRVQMRAELKR-----LQQRLGTTT 184
Query: 412 I----D-------SDRVLVLDKGLVVEFD 429
I D +DR+ V++ G + +
Sbjct: 185 IYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
Score = 33.4 bits (77), Expect = 0.23
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
++G +G GK++ + + EP G I I G D+
Sbjct: 31 LLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDV 64
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 35.8 bits (82), Expect = 0.049
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404
G ++G GQ+Q +C+ARA+ K +L++DE +A+D + ++ T++ +
Sbjct: 159 GTALSG--GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMV 216
Query: 405 AHRL 408
H +
Sbjct: 217 THNM 220
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 36.3 bits (84), Expect = 0.051
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSL----TLALF 233
FKD + + IVG GAGKSS+ T AL+
Sbjct: 14 FKDIDIEKLFDSGIFLIVGPNGAGKSSILDAITFALY 50
Score = 34.0 bits (78), Expect = 0.30
Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 4/21 (19%)
Query: 497 IVGRTGAGKSSL----TLALF 513
IVG GAGKSS+ T AL+
Sbjct: 30 IVGPNGAGKSSILDAITFALY 50
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 35.8 bits (83), Expect = 0.054
Identities = 19/58 (32%), Positives = 40/58 (68%), Gaps = 8/58 (13%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAH 406
GQ+Q + +ARA+ + ++L+LDE T+A+D L+ ++LI + ++S++ T++ + H
Sbjct: 172 GQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELI-TELKSKY---TIVIVTH 225
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 35.3 bits (82), Expect = 0.060
Identities = 55/243 (22%), Positives = 95/243 (39%), Gaps = 48/243 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLAT 271
E++ +VG GAGKS+L LA + P G+I G + L R R + Q
Sbjct: 23 EILHLVGPNGAGKSTL-LARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQ---- 77
Query: 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKR 331
TP F +PV + ++ + P VA L
Sbjct: 78 ------QTPPF---AMPV---FQYLTLHQ-------PDKTRTEAVASALNEVA--EALGL 116
Query: 332 LESVSRSPIYSHFGETVTGNVGQRQLICLARALLR-------KTKILILDEATAAIDLET 384
+ + RS ++G G+ Q + LA +L+ ++L+LDE ++D+
Sbjct: 117 DDKLGRSV------NQLSG--GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ 168
Query: 385 DDLIQSTIRSEFAHC--TVLTIAHRLN-TIIDSDRVLVLDKGLVVEFDSPSVLMK--NKA 439
+ + E V+ +H LN T+ +DRV +L +G ++ ++ N A
Sbjct: 169 QAALDRLLS-ELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPENLA 227
Query: 440 SIF 442
+F
Sbjct: 228 QVF 230
Score = 33.0 bits (76), Expect = 0.34
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLF 552
+ +VG GAGKS+L LA + P G+I G + L R R + Q F
Sbjct: 24 ILHLVGPNGAGKSTL-LARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPF 82
Query: 553 S 553
+
Sbjct: 83 A 83
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 35.4 bits (82), Expect = 0.068
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+AR + + ++L+LDE +A+D ++LI + ++ ++ TV+ + H +
Sbjct: 160 GQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELI-TELKQDY---TVVIVTHNM 215
Query: 409 NTIID-SDRVLVLDKGLVVEFDS 430
SD + G ++EF +
Sbjct: 216 QQAARCSDYTAFMYLGELIEFGN 238
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 35.5 bits (82), Expect = 0.073
Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 20/101 (19%)
Query: 336 SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI--- 392
SR +Y H ++G + QR +I +A A + K+LI DE T A+D+ IQ+ I
Sbjct: 145 SRLDVYPH---QLSGGMSQRVMIAMAIAC--RPKLLIADEPTTALDVT----IQAQIIEL 195
Query: 393 -----RSEFAHCTVLTIAHRLNTIIDS-DRVLVLDKGLVVE 427
+ E + ++ I H L + ++ +++V+ G VVE
Sbjct: 196 LLELQQKE--NMALVLITHDLALVAEAAHKIIVMYAGQVVE 234
Score = 32.0 bits (73), Expect = 0.94
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 11/53 (20%)
Query: 195 EKGEVEFKDYKVRYR----------EGLELVGIVGRTGAGKSSLTLALFRIIE 237
+K V F D +R +G E+VGIVG +G+GKS +LA+ +I+
Sbjct: 7 DKLSVHFGDESAPFRAVDRISYSVKQG-EVVGIVGESGSGKSVSSLAIMGLID 58
Score = 30.1 bits (68), Expect = 3.6
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 14/74 (18%)
Query: 489 VSYAMQ----VGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTLGLHTLR 539
+SY+++ VGIVG +G+GKS +LA+ +I+ A+ + +G D++ + R
Sbjct: 26 ISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAE-KLEFNGQDLQRISEKERR 84
Query: 540 ----SRLTIIPQDP 549
+ + +I QDP
Sbjct: 85 NLVGAEVAMIFQDP 98
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 35.6 bits (82), Expect = 0.082
Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 322 YVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID 381
Y A +R L +S +P T T + G R I LARAL + +L+LDE T +D
Sbjct: 318 YTAEARAASILAGLSFTPEMQV-KATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLD 376
Query: 382 L 382
L
Sbjct: 377 L 377
Score = 30.6 bits (69), Expect = 3.1
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 16/107 (14%)
Query: 335 VSRSPIYSHFGE-TVTGNV----------GQRQLICLARALLRKTKILILDEATAAIDLE 383
V + +H G VTGN+ GQ+ + A+ +K IL+LDE + +DL+
Sbjct: 602 VPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLD 661
Query: 384 T-DDLIQSTIRSEFAHCTVLTIAHRLNTIIDS-DRVLVLDKGLVVEF 428
+ LIQ + VL ++H + I S D + V+ +G V F
Sbjct: 662 AVEALIQGLV---LFQGGVLMVSHDEHLISGSVDELWVVSEGKVTPF 705
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 34.7 bits (80), Expect = 0.085
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 5/86 (5%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS---EFAHCTVLTIAHRLN 409
G R+ + +AR+L+ + ++L LDE T +D +T + I EF T+L H +
Sbjct: 135 GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFG-MTILLTTHYME 193
Query: 410 TIID-SDRVLVLDKGLVVEFDSPSVL 434
DRV ++D G ++ +P L
Sbjct: 194 EAEQLCDRVAIIDHGRIIAEGTPEEL 219
Score = 34.7 bits (80), Expect = 0.10
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V V G++G GAGK++ L +++P G + G D+ +R R+ I
Sbjct: 19 VSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRRRIGI 77
Query: 545 IPQDPVL 551
+ QD +
Sbjct: 78 VFQDLSV 84
Score = 32.3 bits (74), Expect = 0.56
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 207 RYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 266
R R G E+ G++G GAGK++ L +++P G + G D+ +R R+ I+
Sbjct: 22 RVRRG-EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-REVRRRIGIVF 79
Query: 267 QVLA 270
Q L+
Sbjct: 80 QDLS 83
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 34.8 bits (80), Expect = 0.092
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 368 TKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNTII-DSDRVLVLDKGL 424
+ L+LDE TAA+DL + T+R + + VL I H N +DR+ +L G
Sbjct: 173 PRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232
Query: 425 VVEFDSPSVLMK 436
+V +P+ ++
Sbjct: 233 IVAHGAPADVLT 244
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 34.1 bits (78), Expect = 0.092
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
G+ Q + +A ALLR + DE +A +D+E IR SE T L + H L
Sbjct: 75 GELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-A 133
Query: 411 IID--SDRVLVLD 421
++D SDR+ V +
Sbjct: 134 VLDYLSDRIHVFE 146
Score = 31.8 bits (72), Expect = 0.59
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 4/52 (7%)
Query: 203 DYKVRYREGL----ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
+ + G+ E++GIVG G GK++ L + P DG+
Sbjct: 12 VFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP 63
Score = 29.1 bits (65), Expect = 5.2
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
+GIVG G GK++ L + P DG+
Sbjct: 28 IGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITP 63
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 34.4 bits (79), Expect = 0.093
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 8/91 (8%)
Query: 332 LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDL----ETDDL 387
LE + T++G GQR + L RALL + K L+LDE + +D+ +
Sbjct: 119 LERSGLDGAFHQDPATLSG--GQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQW 176
Query: 388 IQSTIRSEFAHCTVLTIAHRLNTIIDSDRVL 418
+ S +R+ A + + H L + RV+
Sbjct: 177 VFSEVRA--AGIPTVQVTHDLQDVPAGSRVI 205
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 34.5 bits (80), Expect = 0.100
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 258
E++GIVG +G+GK++L AL + P G + D + L+ L
Sbjct: 33 EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78
Score = 32.2 bits (74), Expect = 0.56
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 538
+GIVG +G+GK++L AL + P G + D + L+ L
Sbjct: 35 LGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYAL 78
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 34.6 bits (80), Expect = 0.10
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
GQ++ + LAR L + ILDE A+D E L
Sbjct: 134 GQQRRVALARLWLSPAPLWILDEPFTALDKEGVAL 168
Score = 33.4 bits (77), Expect = 0.20
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
I G GAGK++L L ++ P G + G I+ + ++ L + Q + T
Sbjct: 33 ITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTA 92
Query: 557 RLNL----DPVGESSDEAIWKALELAHL 580
NL G + IW+AL L
Sbjct: 93 LENLHFWQRFHGSGNAATIWEALAQVGL 120
Score = 33.0 bits (76), Expect = 0.31
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
E + I G GAGK++L L ++ P G + G I+
Sbjct: 29 EALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN 68
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 34.7 bits (80), Expect = 0.10
Identities = 16/38 (42%), Positives = 25/38 (65%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
GQRQ + +ARAL ++L+LDE A+D T + +Q+
Sbjct: 132 GQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQT 169
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 34.9 bits (80), Expect = 0.11
Identities = 59/291 (20%), Positives = 105/291 (36%), Gaps = 68/291 (23%)
Query: 166 VAVERIKEYGE---TPQ------EAEWVNDKKPKDEWPEKGEVEFKDYKVRYR-----EG 211
+A +R+ ++GE P+ +A+ V +E KD + + EG
Sbjct: 299 IACQRLADFGERFNEPEPELELSDADNVLLLAHDKSV---DSIELKDVHMNPKAPEGSEG 355
Query: 212 L------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 259
++V IVG G GKS+L + P +G I++DG + R
Sbjct: 356 FALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYR 415
Query: 260 SRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQ 319
+ + IF + + F LI ++ + N Q
Sbjct: 416 -------DLFSAIF----------------ADFHLFDD--LIGPDEGE----HASLDNAQ 446
Query: 320 RFYVATSRQLKRLESVSRSPIYS-HFGETVTGNVGQRQLICLARALLRKTKILILDEATA 378
++ L+RLE + I F T + GQ++ + L A L IL+ DE A
Sbjct: 447 QY-------LQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAA 499
Query: 379 AIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
D + + T++ I+H +D+++ L G +V+
Sbjct: 500 DQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
Score = 31.9 bits (72), Expect = 1.0
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 473 AVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
A E G + L ++ V IVG G GKS+L + P +G I++DG
Sbjct: 349 APEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDG 403
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 34.6 bits (79), Expect = 0.12
Identities = 46/224 (20%), Positives = 90/224 (40%), Gaps = 54/224 (24%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI--IEPA---DGTIIIDGVDIRTLGLH 256
KD + + E + I+G +G GKS++ ++ R+ + P+ G I++D DI G+
Sbjct: 21 KDVSMDFPEN-SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79
Query: 257 TLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS 316
PVS+ +V ++F + P
Sbjct: 80 -------------------------------PVSIRR---RVGMVF-QKPNPFPAMSIYD 104
Query: 317 NLQRFYVATSRQLKRLE-------SVSRSPIYSHFGETVTGNV-----GQRQLICLARAL 364
N+ Y R + R E S+ R ++ + + N GQ+Q +C+AR +
Sbjct: 105 NVIAGYKLNGR-VNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163
Query: 365 LRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRL 408
K +++++DE +A+D + I+ I T++ + H +
Sbjct: 164 AVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNM 207
Score = 30.7 bits (69), Expect = 1.8
Identities = 19/63 (30%), Positives = 36/63 (57%), Gaps = 7/63 (11%)
Query: 497 IVGRTGAGKSSLTLALFRI--IEPA---DGTIIIDGVDIRTLGLH--TLRSRLTIIPQDP 549
I+G +G GKS++ ++ R+ + P+ G I++D DI G+ ++R R+ ++ Q P
Sbjct: 35 IIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKP 94
Query: 550 VLF 552
F
Sbjct: 95 NPF 97
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 34.9 bits (80), Expect = 0.12
Identities = 42/153 (27%), Positives = 65/153 (42%), Gaps = 33/153 (21%)
Query: 314 FCSNLQRFYVATSRQLKRL--ESVSRSPIYSHFGETVTGNV-------GQRQLICLARAL 364
FCS L R + ++Q K L ESV + T+ GN G+R+ + +A +
Sbjct: 163 FCS-LLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEM 221
Query: 365 LRKTKILILDEATAAIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDS--------- 414
L +LILDE T+ +D L+ T+ ++A + TI+ S
Sbjct: 222 LINPSLLILDEPTSGLDATAAYRLVL----------TLGSLAQKGKTIVTSMHQPSSRVY 271
Query: 415 ---DRVLVLDKGLVVEFDSPSVLMKNKASIFYS 444
D VLVL +G + F S M S+ +S
Sbjct: 272 QMFDSVLVLSEGRCLFFGKGSDAMAYFESVGFS 304
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 34.8 bits (80), Expect = 0.14
Identities = 31/101 (30%), Positives = 49/101 (48%), Gaps = 7/101 (6%)
Query: 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL 542
G + L++ V ++G G+GKS+L + L + +P G I++DG + L R
Sbjct: 340 GPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLF 399
Query: 543 TIIPQDPVLFSGTLRLNLDPVGESSDEAIWK---ALELAHL 580
+ + D LF L P G++S + I K LELAH
Sbjct: 400 SAVFSDYHLFDQL----LGPEGKASPQLIEKWLQRLELAHK 436
Score = 34.4 bits (79), Expect = 0.17
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 17/95 (17%)
Query: 166 VAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGL------------- 212
VA +I + P +A++ +P+ +P+ +E ++ + Y++
Sbjct: 294 VAFNKIAKLELAPYKADF---PRPQ-AFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRG 349
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
ELV ++G G+GKS+L + L + +P G I++DG
Sbjct: 350 ELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDG 384
Score = 29.8 bits (67), Expect = 4.8
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 18/85 (21%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC----------TVL 402
GQ++ + L ALL + IL+LDE A D R EF T+
Sbjct: 452 GQKKRLALLLALLEERDILVLDEWAADQD--------PAFRREFYQVLLPLLKEQGKTIF 503
Query: 403 TIAHRLNTIIDSDRVLVLDKGLVVE 427
I+H + I +DR+L + G + E
Sbjct: 504 AISHDDHYFIHADRLLEMRNGQLSE 528
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 34.5 bits (80), Expect = 0.15
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 9/41 (21%)
Query: 215 VGIVGRTGAGKSSLTLALFRII----EPADGTIII-DGVDI 250
VG++G GAGKS+ LFR+I +P GTI I + V +
Sbjct: 351 VGVIGPNGAGKST----LFRMITGQEQPDSGTIKIGETVKL 387
Score = 34.5 bits (80), Expect = 0.15
Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 9/41 (21%)
Query: 495 VGIVGRTGAGKSSLTLALFRII----EPADGTIII-DGVDI 530
VG++G GAGKS+ LFR+I +P GTI I + V +
Sbjct: 351 VGVIGPNGAGKST----LFRMITGQEQPDSGTIKIGETVKL 387
Score = 32.6 bits (75), Expect = 0.69
Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH 406
G+R+ + L R LL K +L+LDE T +D E+ ++ ++ E+ TV+ + H
Sbjct: 165 GERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQ-EYPG-TVVAVTH 216
Score = 30.3 bits (69), Expect = 3.4
Identities = 20/54 (37%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH 406
G+R + LA+ L +L+LDE T +D+ET ++ + EFA C V+ I+H
Sbjct: 447 GERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEAL-LEFAGCAVV-ISH 498
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 34.7 bits (80), Expect = 0.15
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALF 233
K V + +G+ L I+G+ G+GKSS+ A+
Sbjct: 15 KSSVVEFDDGINL--IIGQNGSGKSSILEAIL 44
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 34.1 bits (78), Expect = 0.16
Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTII 545
V + +VG GAGKS+L + + G+I G + L R R +
Sbjct: 20 GEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLS 78
Query: 546 PQDPVLF 552
Q F
Sbjct: 79 QQQTPPF 85
Score = 33.3 bits (76), Expect = 0.27
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 258
E++ +VG GAGKS+L + + G+I G + L
Sbjct: 26 EILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATEL 70
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 34.5 bits (79), Expect = 0.16
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
E+VGI+G G+GKS+L+ + + P GT+ I G
Sbjct: 51 EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85
Score = 31.8 bits (72), Expect = 1.2
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
VGI+G G+GKS+L+ + + P GT+ I G
Sbjct: 53 VGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 34.7 bits (81), Expect = 0.16
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 8/35 (22%)
Query: 215 VGIVGRTGAGKSSLTLALFRII----EPADGTIII 245
VGI+G GAGKS+ LF++I +P GTI I
Sbjct: 353 VGIIGPNGAGKST----LFKMITGQEQPDSGTIKI 383
Score = 34.7 bits (81), Expect = 0.16
Identities = 17/35 (48%), Positives = 22/35 (62%), Gaps = 8/35 (22%)
Query: 495 VGIVGRTGAGKSSLTLALFRII----EPADGTIII 525
VGI+G GAGKS+ LF++I +P GTI I
Sbjct: 353 VGIIGPNGAGKST----LFKMITGQEQPDSGTIKI 383
Score = 28.9 bits (66), Expect = 8.5
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET 384
G+R+ + L R LL K +L+LDE T +D E+
Sbjct: 167 GERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 33.8 bits (77), Expect = 0.17
Identities = 13/29 (44%), Positives = 23/29 (79%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID 381
GQ+Q +C+ARA+ + ++L+LDE +A+D
Sbjct: 153 GQQQRLCIARAIATEPEVLLLDEPCSALD 181
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 34.0 bits (78), Expect = 0.17
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+AR L +++++DE +A+D I+ I TV+ + H +
Sbjct: 153 GQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAA 212
Query: 413 D-SDRVLVLDKGLVVEFDSPSVLMKN 437
SD + G ++EFD + + +N
Sbjct: 213 RVSDYTGFMYLGKLIEFDKTTQIFEN 238
>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase. TrmE (MnmE,
ThdF, MSS1) is a 3-domain protein found in bacteria and
eukaryotes. It controls modification of the uridine at
the wobble position (U34) of tRNAs that read codons
ending with A or G in the mixed codon family boxes. TrmE
contains a GTPase domain that forms a canonical Ras-like
fold. It functions a molecular switch GTPase, and
apparently uses a conformational change associated with
GTP hydrolysis to promote the tRNA modification
reaction, in which the conserved cysteine in the
C-terminal domain is thought to function as a catalytic
residue. In bacteria that are able to survive in
extremely low pH conditions, TrmE regulates
glutamate-dependent acid resistance.
Length = 159
Score = 33.2 bits (77), Expect = 0.18
Identities = 22/63 (34%), Positives = 30/63 (47%), Gaps = 16/63 (25%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFR----IIEPADGT--------IIIDGVDIR---TL 253
REG+++V I G+ GKSSL AL I+ GT I + G+ +R T
Sbjct: 1 REGIKVV-IAGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEEEIDLGGIPVRLIDTA 59
Query: 254 GLH 256
GL
Sbjct: 60 GLR 62
>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction
only].
Length = 296
Score = 34.0 bits (78), Expect = 0.19
Identities = 13/21 (61%), Positives = 16/21 (76%)
Query: 493 MQVGIVGRTGAGKSSLTLALF 513
+ V ++G TGAGKSSL ALF
Sbjct: 40 VNVLLMGATGAGKSSLINALF 60
Score = 33.2 bits (76), Expect = 0.37
Identities = 13/19 (68%), Positives = 15/19 (78%)
Query: 215 VGIVGRTGAGKSSLTLALF 233
V ++G TGAGKSSL ALF
Sbjct: 42 VLLMGATGAGKSSLINALF 60
>gnl|CDD|178296 PLN02693, PLN02693, IAA-amino acid hydrolase.
Length = 437
Score = 34.3 bits (78), Expect = 0.19
Identities = 27/108 (25%), Positives = 49/108 (45%), Gaps = 20/108 (18%)
Query: 129 LDNKLTLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW-VNDK 187
L+N LT Q L +++ W+ S ++ N++ E ++P+ +W V +
Sbjct: 3 LNNFLTF---QLLLLLLRVSSESPWIAGDVSQIQINLL------ELAKSPEVFDWMVRIR 53
Query: 188 KPKDEWPEKGEVEFKDYK----------VRYREGLELVGIVGRTGAGK 225
+ E PE G EF+ K ++YR + + GI+G G G+
Sbjct: 54 RKIHENPELGYEEFETSKLIRSELDLIGIKYRYPVAITGIIGYIGTGE 101
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 33.6 bits (77), Expect = 0.21
Identities = 54/202 (26%), Positives = 85/202 (42%), Gaps = 37/202 (18%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII----DGVDIRTLGLHT-LRSRLTIIPQ 267
E V + G +G+GKS+L +L+ P +G I++ + VD+ T L R T I
Sbjct: 38 ECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGY 97
Query: 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV--KPLIITPFCSNLQRFYVAT 325
V F+ VI VS L DV +PL+ +
Sbjct: 98 V-----------SQFLRVIPRVSAL------------DVVAEPLLARGV--PREVARAKA 132
Query: 326 SRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD 385
+ L RL R ++S T +G G++Q + +AR + IL+LDE TA++D
Sbjct: 133 ADLLTRLNLPER--LWSLAPATFSG--GEQQRVNIARGFIVDYPILLLDEPTASLDATNR 188
Query: 386 DLIQSTIRSEFAH-CTVLTIAH 406
++ IR A ++ I H
Sbjct: 189 AVVVELIREAKARGAALVGIFH 210
Score = 28.5 bits (64), Expect = 8.2
Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 29/128 (22%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII----DGVDIRTLGLHT--- 537
V LSV+ V + G +G+GKS+L +L+ P +G I++ + VD+ T
Sbjct: 30 VSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLE 89
Query: 538 LRSR--------LTIIPQDPVLFSGTLRLNLDPV---GESSDEAIWKALEL-AHLNTFVS 585
+R L +IP+ L + +P+ G + A KA +L L
Sbjct: 90 VRRTTIGYVSQFLRVIPRVS-----ALDVVAEPLLARGVPREVARAKAADLLTRL----- 139
Query: 586 NLPARLQH 593
NLP RL
Sbjct: 140 NLPERLWS 147
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 34.3 bits (79), Expect = 0.21
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
++G GAGKS+L LF I + G+I+ G +I
Sbjct: 29 LMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI 62
Score = 34.3 bits (79), Expect = 0.21
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
++G GAGKS+L LF I + G+I+ G +I
Sbjct: 29 LMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEI 62
Score = 33.9 bits (78), Expect = 0.25
Identities = 21/74 (28%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAI-DLETDDLIQSTIRSEFAHCTVLTIAHRLNT 410
V Q Q+I +A+A KI+I+DE T+++ + E + L + + C ++ I+H++
Sbjct: 137 VSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEE 196
Query: 411 IID-SDRVLVLDKG 423
I D + +L G
Sbjct: 197 IFQLCDEITILRDG 210
Score = 32.0 bits (73), Expect = 1.0
Identities = 58/237 (24%), Positives = 102/237 (43%), Gaps = 41/237 (17%)
Query: 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 259
+D +G E++GI G GA ++ + LF I E + GTI + G I
Sbjct: 263 SIRDVSFDLHKG-EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINN------H 315
Query: 260 SRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFI-----QVSLIFTEDVKPLIITPF 314
+ I A + ST ++ ++ + + L I +V L+ +K
Sbjct: 316 NANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK------- 368
Query: 315 CSNLQRFYVATSRQLKRLESVSRSPIYS-HFGETVTGNVGQRQLICLARALLRKTKILIL 373
S+ Q +V S ++K +P + G GN +Q + + R LL + +IL+L
Sbjct: 369 -SDTQ--WVIDSMRVK-------TPGHRTQIGSLSGGN---QQKVIIGRWLLTQPEILML 415
Query: 374 DEATAAIDL----ETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425
DE T ID+ E LI + + ++ I+ + ++ +DR+LV+ GLV
Sbjct: 416 DEPTRGIDVGAKFEIYQLIAELAKKDKG---IIIISSEMPELLGITDRILVMSNGLV 469
>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed.
Length = 449
Score = 33.9 bits (79), Expect = 0.21
Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Query: 207 RYREGLELVGIVGRTGAGKSSL 228
REGL++V I GR GKSSL
Sbjct: 211 ILREGLKVV-IAGRPNVGKSSL 231
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 33.2 bits (76), Expect = 0.27
Identities = 22/80 (27%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD----DLIQSTIRSEFAHCTVLTIAHRL 408
G +Q + +AR L+ + +++ +DE T +D+ DL++ +R V+ + H L
Sbjct: 155 GMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE--LGLAVVIVTHDL 212
Query: 409 NTI-IDSDRVLVLDKGLVVE 427
+ +DR++V+ +G VVE
Sbjct: 213 AVARLLADRLMVMKQGQVVE 232
Score = 32.4 bits (74), Expect = 0.52
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRL 262
E++GIVG +G+GK++L + + P GT+ D + L+T+ R RL
Sbjct: 33 EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRL 86
Score = 30.5 bits (69), Expect = 1.9
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 9/84 (10%)
Query: 468 SAALLAVLSKETLNAGLVGLS-VSYAMQ----VGIVGRTGAGKSSLTLALFRIIEPADGT 522
LL+V L G VS+ + +GIVG +G+GK++L + + P GT
Sbjct: 3 DKPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGT 62
Query: 523 IIIDGVDIRTLGLHTL----RSRL 542
+ D + L+T+ R RL
Sbjct: 63 VTYRMRDGQPRDLYTMSEAERRRL 86
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 33.1 bits (75), Expect = 0.30
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+AR L + +++++DE +A+D + I+ ++ + T+ + H +
Sbjct: 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAA 210
Query: 413 -DSDRVLVLDKGLVVEF 428
SD L G +VE+
Sbjct: 211 RASDWTGFLLTGDLVEY 227
Score = 29.3 bits (65), Expect = 5.9
Identities = 23/72 (31%), Positives = 40/72 (55%), Gaps = 7/72 (9%)
Query: 496 GIVGRTGAGKSSLTLALFR---IIEPA--DGTIIIDGVDIRT--LGLHTLRSRLTIIPQD 548
I+G +G GKS+L AL R I+ A +G +++D +I + L + LR R+ ++ Q
Sbjct: 34 AIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQ 93
Query: 549 PVLFSGTLRLNL 560
P F ++ N+
Sbjct: 94 PNPFPKSIFDNV 105
>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only].
Length = 454
Score = 33.7 bits (78), Expect = 0.30
Identities = 23/65 (35%), Positives = 32/65 (49%), Gaps = 16/65 (24%)
Query: 207 RYREGLELVGIVGRTGAGKSSLTLALFR----IIEPADGT--------IIIDGVDIR--- 251
REGL++V I+GR GKSSL AL I+ GT I ++G+ +R
Sbjct: 213 ILREGLKVV-IIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNGIPVRLVD 271
Query: 252 TLGLH 256
T G+
Sbjct: 272 TAGIR 276
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 33.2 bits (76), Expect = 0.32
Identities = 13/41 (31%), Positives = 28/41 (68%), Gaps = 4/41 (9%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQ 389
GQ+Q +C+ARA+ + +++++DE +A+D L ++L+
Sbjct: 155 GQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMH 195
>gnl|CDD|213240 cd03273, ABC_SMC2_euk, ATP-binding cassette domain of eukaryotic
SMC2 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 251
Score = 33.0 bits (76), Expect = 0.35
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 353 GQRQLI--CLARALL--RKTKILILDEATAAIDLETDDLIQSTIRSEFAH 398
GQR L+ L ALL + + ILDE AA+DL I I++ F
Sbjct: 170 GQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKG 219
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 32.7 bits (75), Expect = 0.44
Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 21/105 (20%)
Query: 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-----LHTLRSRLTI 544
SY V I+G TG+GKS+L L +++P GT+ I G + T G L LR ++ I
Sbjct: 34 SY---VAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKNKKLKPLRKKVGI 89
Query: 545 IPQDP--VLFSGTLR-------LNLDPVGESSDEAIWKALELAHL 580
+ Q P LF T+ +N G S ++A KA E+ L
Sbjct: 90 VFQFPEHQLFEETVEKDICFGPMNF---GVSEEDAKQKAREMIEL 131
Score = 31.9 bits (73), Expect = 0.89
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 7/71 (9%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-----LH 256
D V G V I+G TG+GKS+L L +++P GT+ I G + T G L
Sbjct: 24 YDVNVSIPSG-SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTI-GERVITAGKKNKKLK 81
Query: 257 TLRSRLTIIPQ 267
LR ++ I+ Q
Sbjct: 82 PLRKKVGIVFQ 92
>gnl|CDD|206666 cd01878, HflX, HflX GTPase family. HflX subfamily. A distinct
conserved domain with a glycine-rich segment N-terminal
of the GTPase domain characterizes the HflX subfamily.
The E. coli HflX has been implicated in the control of
the lambda cII repressor proteolysis, but the actual
biological functions of these GTPases remain unclear.
HflX is widespread, but not universally represented in
all three superkingdoms.
Length = 204
Score = 32.4 bits (75), Expect = 0.48
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 205 KVRYREGLELVGIVGRTGAGKSSL 228
R R G+ V +VG T AGKS+L
Sbjct: 34 ARRKRSGVPTVALVGYTNAGKSTL 57
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 32.2 bits (74), Expect = 0.52
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 6/54 (11%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIII----DG--VDIRTLGLHTLRSR 261
+VGI G GAGKS+L L +++ I DG +D L H LR R
Sbjct: 35 IVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPR 88
Score = 31.1 bits (71), Expect = 1.4
Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIII----DG--VDIRTLGLHTLRSR 541
VGI G GAGKS+L L +++ I DG +D L H LR R
Sbjct: 36 VGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPR 88
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 32.5 bits (74), Expect = 0.53
Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 8/115 (6%)
Query: 319 QRFYVATSRQLKRLESV---SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDE 375
QRF R ++ L V I + +T Q+ +I A AL + ++LI DE
Sbjct: 127 QRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMI--AIALANQPRLLIADE 184
Query: 376 ATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427
T +++ T I + + ++ T+L I+H L I +D++ VL G VE
Sbjct: 185 PTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVE 239
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 31.1 bits (71), Expect = 0.59
Identities = 8/15 (53%), Positives = 11/15 (73%)
Query: 494 QVGIVGRTGAGKSSL 508
+V +VGR GKS+L
Sbjct: 1 RVALVGRPNVGKSTL 15
Score = 30.7 bits (70), Expect = 0.70
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 215 VGIVGRTGAGKSSL 228
V +VGR GKS+L
Sbjct: 2 VALVGRPNVGKSTL 15
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 32.1 bits (73), Expect = 0.59
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
G++Q + LARA + +L DE T +D +T D I
Sbjct: 150 GEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKI 185
>gnl|CDD|225171 COG2262, HflX, GTPases [General function prediction only].
Length = 411
Score = 32.6 bits (75), Expect = 0.61
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 205 KVRYREGLELVGIVGRTGAGKSSLTLAL 232
K R R G+ LV +VG T AGKS+L AL
Sbjct: 185 KKRSRSGIPLVALVGYTNAGKSTLFNAL 212
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 32.3 bits (73), Expect = 0.68
Identities = 22/88 (25%), Positives = 45/88 (51%), Gaps = 3/88 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLE-TDDLIQSTIR-SEFAHCTVLTIAHRLNT 410
GQ++ + LA + L+LDE T +D + +D I R ++ ++ + H ++
Sbjct: 154 GQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQ 213
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKN 437
++ +D V+V+ +G V+ SP + N
Sbjct: 214 VLRIADEVIVMHEGKVISIGSPFEIFSN 241
>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of
small guanosine triphosphatases (GTPases). Ras-like
GTPase superfamily. The Ras-like superfamily of small
GTPases consists of several families with an extremely
high degree of structural and functional similarity. The
Ras superfamily is divided into at least four families
in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families.
This superfamily also includes proteins like the GTP
translation factors, Era-like GTPases, and G-alpha chain
of the heterotrimeric G proteins. Members of the Ras
superfamily regulate a wide variety of cellular
functions: the Ras family regulates gene expression, the
Rho family regulates cytoskeletal reorganization and
gene expression, the Rab and Sar1/Arf families regulate
vesicle trafficking, and the Ran family regulates
nucleocytoplasmic transport and microtubule
organization. The GTP translation factor family
regulates initiation, elongation, termination, and
release in translation, and the Era-like GTPase family
regulates cell division, sporulation, and DNA
replication. Members of the Ras superfamily are
identified by the GTP binding site, which is made up of
five characteristic sequence motifs, and the switch I
and switch II regions.
Length = 161
Score = 31.3 bits (71), Expect = 0.73
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 216 GIVGRTGAGKSSLTLALFRIIEPADGTIII--DGVDIRTLGLHTLRSRLTII 265
+VGR G GKSSL AL + D+ L + +L ++
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLV 52
Score = 31.3 bits (71), Expect = 0.73
Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIII--DGVDIRTLGLHTLRSRLTII 545
+VGR G GKSSL AL + D+ L + +L ++
Sbjct: 1 VVVGRGGVGKSSLLNALLGGEVGEVSDVPGTTRDPDVYVKELDKGKVKLVLV 52
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 31.8 bits (72), Expect = 0.75
Identities = 15/60 (25%), Positives = 36/60 (60%), Gaps = 8/60 (13%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+AR + +++++DE +A+D + +DLI ++ ++ T++ + H +
Sbjct: 150 GQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK-LKEDY---TIVIVTHNM 205
>gnl|CDD|184856 PRK14854, nhaA, pH-dependent sodium/proton antiporter; Provisional.
Length = 383
Score = 32.1 bits (73), Expect = 0.79
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 8/68 (11%)
Query: 458 LETVGNLITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE 517
E +G LI FSAALLA++ + L+ YAM I + G + L I
Sbjct: 8 QELIGGLILFSAALLAIVVNNS------PLASYYAMLETINVKLGIENLVIDKNLMHWIN 61
Query: 518 PADGTIII 525
DG + I
Sbjct: 62 --DGLMAI 67
>gnl|CDD|216796 pfam01935, DUF87, Domain of unknown function DUF87. The function
of this prokaryotic domain is unknown. It contains
several conserved aspartates and histidines that could
be metal ligands.
Length = 218
Score = 31.5 bits (72), Expect = 0.80
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 215 VGIVGRTGAGKSSLT-LALFRIIEPADGTIII 245
I+G TG+GKS+ + L ++E T++I
Sbjct: 26 FAILGSTGSGKSNTVAVLLEELLEKKGATVLI 57
Score = 31.5 bits (72), Expect = 0.80
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 495 VGIVGRTGAGKSSLT-LALFRIIEPADGTIII 525
I+G TG+GKS+ + L ++E T++I
Sbjct: 26 FAILGSTGSGKSNTVAVLLEELLEKKGATVLI 57
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 31.6 bits (72), Expect = 0.84
Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 4/42 (9%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQS 390
G +Q + +A ALL K+LILDE T +D E +LI+S
Sbjct: 128 GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRS 169
Score = 30.8 bits (70), Expect = 1.5
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
+ G++G GAGKS+L + I+ P G II DG
Sbjct: 27 SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG 61
Score = 30.8 bits (70), Expect = 1.6
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
G++G GAGKS+L + I+ P G II DG
Sbjct: 30 GLLGPNGAGKSTLLKMITGILRPTSGEIIFDG 61
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 32.1 bits (73), Expect = 0.95
Identities = 25/97 (25%), Positives = 55/97 (56%), Gaps = 15/97 (15%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID------LETDDLI--QSTIRSEFAHCTVLTI 404
G +Q + LARA + IL++DE +A+D L+ D+L+ QS ++ T++ +
Sbjct: 168 GMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQ-DELLELQSKLKK-----TIVFV 221
Query: 405 AHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKAS 440
+H L+ + +R+ +++ G +++ +P ++ N A+
Sbjct: 222 SHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPAN 258
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 32.0 bits (73), Expect = 1.2
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 351 NVGQRQLICLARALLRKTKILI-LDEATAAIDLETDDLIQSTIRSEFAHC-TVLTIAHRL 408
NV QR+ + + L+ K K+L+ LDE T+ +D +T I +R H +L H+
Sbjct: 903 NVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQP 962
Query: 409 NTII--DSDRVLVLDKG 423
+ I+ + DR+L+L KG
Sbjct: 963 SAILFEEFDRLLLLQKG 979
>gnl|CDD|133450 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding domain of
glutamate dehydrogenase, leucine dehydrogenase,
phenylalanine dehydrogenase, and valine dehydrogenase.
Amino acid dehydrogenase (DH) is a widely distributed
family of enzymes that catalyzes the oxidative
deamination of an amino acid to its keto acid and
ammonia with concomitant reduction of NAD(P)+. This
subfamily includes glutamate, leucine, phenylalanine,
and valine DHs. Glutamate DH is a multi-domain enzyme
that catalyzes the reaction from glutamate to
2-oxyoglutarate and ammonia in the presence of NAD or
NADP. It is present in all organisms. Enzymes involved
in ammonia assimilation are typically NADP+-dependent,
while those involved in glutamate catabolism are
generally NAD+-dependent. As in other NAD+-dependent
DHs, monomers in this family have 2 domains separated by
a deep cleft. Here the c-terminal domain contains a
modified NAD-binding Rossmann fold with 7 rather than
the usual 6 beta strands and one strand anti-parrallel
to the others. Amino acid DH-like NAD(P)-binding domains
are members of the Rossmann fold superfamily and include
glutamate, leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 217
Score = 31.0 bits (70), Expect = 1.3
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 4/53 (7%)
Query: 119 LSRFSSDVNTLDNKLTLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERI 171
L R S D + +KL + + F I++ T NI+A ERI
Sbjct: 168 LQRLSWDAEEVRSKLEQVMTDIHNGVFAISERDGV----TMRAAANILAFERI 216
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of several
bacterial zeta toxin proteins. Zeta toxin is thought to
be part of a postregulational killing system in
bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 30.7 bits (70), Expect = 1.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
+ G+ GAGK+ L AL + + ID ++RT
Sbjct: 17 LGGQPGAGKTELARALLEELG-GGNVVRIDPDELRTY 52
Score = 30.7 bits (70), Expect = 1.3
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533
+ G+ GAGK+ L AL + + ID ++RT
Sbjct: 17 LGGQPGAGKTELARALLEELG-GGNVVRIDPDELRTY 52
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The
Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show sequence
conservation in the region between the Walker A and B
motifs (G1 and G3 box motifs), to the exclusion of other
GTPases. TrmE is ubiquitous in bacteria and is a
widespread mitochondrial protein in eukaryotes, but is
absent from archaea. The yeast member of TrmE family,
MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 161
Score = 30.7 bits (70), Expect = 1.4
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 216 GIVGRTGAGKSSLTLALFR----IIEPADGT 242
I GR GKSSL AL I+ P GT
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSPIPGT 31
Score = 30.7 bits (70), Expect = 1.4
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 4/31 (12%)
Query: 496 GIVGRTGAGKSSLTLALFR----IIEPADGT 522
I GR GKSSL AL I+ P GT
Sbjct: 1 AIFGRPNVGKSSLLNALLGQNVGIVSPIPGT 31
>gnl|CDD|189954 pfam01359, Transposase_1, Transposase (partial DDE domain). This
family includes the mariner transposase.
Length = 80
Score = 29.1 bits (66), Expect = 1.4
Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 336 SRSPIYSHF---GETVTGNVGQRQLICLARALLRK 367
+ I+ GET+ + +QL L AL K
Sbjct: 38 QKGVIHYELLPPGETINAELYCQQLDRLKEALREK 72
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 31.1 bits (71), Expect = 1.4
Identities = 61/237 (25%), Positives = 95/237 (40%), Gaps = 43/237 (18%)
Query: 213 ELVGIVGRTGAGKSSL--TLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLA 270
E+ I+G G+GKS+L T+A E GTI+ G D+ L R+R A
Sbjct: 27 EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDE-RAR--------A 77
Query: 271 TIFVICYSTPVFIFVIVP-VSVLYFFIQVSL---IFTEDVKPLIITPFCSNLQRFYVATS 326
+F + + P I P VS L F++ +L +PL + F L+
Sbjct: 78 GLF-LAFQYPEEI----PGVSNL-EFLRSALNARRSARGEEPLDLLDFLKLLK------- 124
Query: 327 RQLKRLESVSRSPIYSHFG--ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLET 384
+L + + + E +G +R I L + K+ ILDE + +D++
Sbjct: 125 ---AKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALL--EPKLAILDEIDSGLDIDA 179
Query: 385 DDLIQSTI---RSEFAHCTVLTIAH--RLNTIIDSDRVLVLDKGLVVEFDSPSVLMK 436
++ I R + L I H RL I D V VL G +V+ L K
Sbjct: 180 LKIVAEGINRLREP--DRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE-LAK 233
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 30.7 bits (70), Expect = 1.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 9/39 (23%)
Query: 195 EKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALF 233
E+ E+EF L L IVG+ GAGK+++ AL
Sbjct: 14 ERSEIEF-------FSPLTL--IVGQNGAGKTTIIEALK 43
Score = 28.7 bits (65), Expect = 7.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 497 IVGRTGAGKSSLTLALF 513
IVG+ GAGK+++ AL
Sbjct: 27 IVGQNGAGKTTIIEALK 43
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 30.9 bits (70), Expect = 1.5
Identities = 14/56 (25%), Positives = 34/56 (60%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+AR + + +++++DE +A+D + I+ T+ + T++ + H +
Sbjct: 158 GQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNM 213
>gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD. SbcCD
and other Mre11/Rad50 (MR) complexes are implicated in
the metabolism of DNA ends. They cleave ends sealed by
hairpin structures and are thought to play a role in
removing protein bound to DNA termini.
Length = 213
Score = 30.7 bits (70), Expect = 1.7
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 4/28 (14%)
Query: 210 EGLELVGIVGRTGAGKSSL----TLALF 233
+ L I G TGAGKS++ T AL+
Sbjct: 26 DNNGLFLICGPTGAGKSTILDAITYALY 53
Score = 29.2 bits (66), Expect = 4.6
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 496 GIVGRTGAGKSSL----TLALF 513
I G TGAGKS++ T AL+
Sbjct: 32 LICGPTGAGKSTILDAITYALY 53
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 30.9 bits (70), Expect = 2.0
Identities = 11/29 (37%), Positives = 22/29 (75%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID 381
GQ+Q +C+ARA+ +++++DE +A+D
Sbjct: 167 GQQQRLCIARAIAVSPEVILMDEPCSALD 195
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 30.2 bits (68), Expect = 2.1
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 4/24 (16%)
Query: 214 LVGIVGRTGAGKSSL----TLALF 233
L I G G+GK+++ AL+
Sbjct: 21 LTLIYGPNGSGKTTILDAIRWALY 44
Score = 29.4 bits (66), Expect = 3.7
Identities = 7/21 (33%), Positives = 12/21 (57%), Gaps = 4/21 (19%)
Query: 497 IVGRTGAGKSSL----TLALF 513
I G G+GK+++ AL+
Sbjct: 24 IYGPNGSGKTTILDAIRWALY 44
>gnl|CDD|143474 cd07322, PriL_PriS_Eukaryotic, Eukaryotic core primase: Large
subunit, PriL. Primases synthesize the RNA primers
required for DNA replication. Primases are grouped into
two classes, bacteria/bacteriophage and
archaeal/eukaryotic. The proteins in the two classes
differ in structure and the replication apparatus
components. Archaeal/eukaryotic core primase is a
heterodimeric enzyme consisting of a small catalytic
subunit (PriS) and a large subunit (PriL). In eukaryotic
organisms, a heterotetrameric enzyme formed by DNA
polymerase alpha, the B subunit and two primase subunits
has primase activity. Although the catalytic activity
resides within PriS, the PriL subunit is essential for
primase function as disruption of the PriL gene in yeast
is lethal. PriL is composed of two structural domains.
Several functions have been proposed for PriL such as
stabilization of the PriS, involvement in synthesis
initiation, improvement of primase processivity,
determination of product size and transfer of the
products to DNA polymerase alpha.
Length = 390
Score = 30.7 bits (70), Expect = 2.2
Identities = 14/52 (26%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 301 IFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSR-SPIYSHFGETVTGN 351
+ +++ L+++ F S L + T+R L RLE R P+ ++ TG
Sbjct: 149 VPQDELVSLVLSKFRSRLSKALALTARSLPRLEEDDRLLPLLKSLSKSYTGK 200
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism].
Length = 218
Score = 30.3 bits (69), Expect = 2.4
Identities = 8/31 (25%), Positives = 17/31 (54%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTII 244
++GI G +G+GK+++ L + +I
Sbjct: 10 IIGIAGGSGSGKTTVAKELSEQLGVEKVVVI 40
Score = 29.2 bits (66), Expect = 5.7
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTII 524
+GI G +G+GK+++ L + +I
Sbjct: 11 IGIAGGSGSGKTTVAKELSEQLGVEKVVVI 40
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 30.4 bits (69), Expect = 2.4
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
E + I+G+TG+GK++ L ++ P GTI
Sbjct: 34 EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66
Score = 30.1 bits (68), Expect = 3.2
Identities = 21/91 (23%), Positives = 46/91 (50%), Gaps = 7/91 (7%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLE-TDDL--IQSTIRSEFAHCTVLTIAHRLN 409
GQ++ + LA L + L+ DE TA +D + ++ I + + T++ + H L+
Sbjct: 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGK--TIILVTHDLD 226
Query: 410 TIID-SDRVLVLDKGLVV-EFDSPSVLMKNK 438
+++ + R + G ++ + D+ +L NK
Sbjct: 227 NVLEWTKRTIFFKDGKIIKDGDTYDILSDNK 257
Score = 28.5 bits (64), Expect = 9.4
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII 525
V + ++ + I+G+TG+GK++ L ++ P GTI
Sbjct: 26 VSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEW 66
>gnl|CDD|215160 PLN02286, PLN02286, arginine-tRNA ligase.
Length = 576
Score = 30.8 bits (70), Expect = 2.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 80 GFV-ISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSS 124
GFV + L + AKR+ L+ + W+P T PV R + FSS
Sbjct: 84 GFVNVRLSASWLAKRIERMLVDGIDTWAP----TLPVKRAVVDFSS 125
>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed.
Length = 435
Score = 30.4 bits (70), Expect = 2.6
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 7/42 (16%)
Query: 191 DEWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLAL 232
+E PE+ E + +D ++ + I+GR GKSSL AL
Sbjct: 159 EELPEEEEEDEEDEPIK-------IAIIGRPNVGKSSLINAL 193
>gnl|CDD|222895 PHA02589, rnlA, RNA ligase A; Provisional.
Length = 378
Score = 30.4 bits (69), Expect = 2.6
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Query: 402 LTIAHRLNTIIDSDRVLVLDK---GLVVEF-DSPSVLMKNKASIFYSMAKDA 449
T+ LN ++ V+DK L+ + D +L+K+KASI A DA
Sbjct: 86 FTMGLDLNDVVY-----VMDKEDGSLISTYLDGGYLLLKSKASIKSEQANDA 132
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 30.5 bits (69), Expect = 2.7
Identities = 25/86 (29%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
G+ Q + +A AL + ++LI DE T A++ T I + + + T+L I+H L
Sbjct: 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQM 221
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLM 435
+ +D++ VL G VE L+
Sbjct: 222 LSQWADKINVLYCGQTVETAPSKELV 247
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 30.4 bits (69), Expect = 2.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 353 GQRQLICLARALLRKTKILILDE 375
GQ++L + RAL++ +LILDE
Sbjct: 405 GQQRLALIVRALVKHPTLLILDE 427
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 30.4 bits (69), Expect = 3.0
Identities = 21/86 (24%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH------CTVLTIAH 406
GQRQ + + R L+ + + +LDE + +D ++ +R E + T++ + H
Sbjct: 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA----LRVQMRIEISRLHKRLGRTMIYVTH 192
Query: 407 -RLNTIIDSDRVLVLDKGLVVEFDSP 431
++ + +D+++VLD G V + P
Sbjct: 193 DQVEAMTLADKIVVLDAGRVAQVGKP 218
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 30.0 bits (68), Expect = 3.3
Identities = 23/78 (29%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAI-DLETD---DLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q + + L + K+L+LDE A + D ET+ +L++S ++L + H +
Sbjct: 151 GQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK----HSILVVEHDM 206
Query: 409 NTIID-SDRVLVLDKGLV 425
+ + +D+V VL +G V
Sbjct: 207 GFVREIADKVTVLHEGSV 224
>gnl|CDD|237017 PRK11904, PRK11904, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1038
Score = 30.6 bits (70), Expect = 3.5
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 12/43 (27%)
Query: 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS-EFAH 398
L+CLA ALLR I D ATA D LI+ + ++
Sbjct: 84 LMCLAEALLR-----IPDAATA------DALIRDKLSGADWKK 115
>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction
only].
Length = 444
Score = 30.2 bits (69), Expect = 3.7
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
Query: 493 MQVGIVGRTGAGKSSLTLALFR----IIEPADGTIIIDGVDI 530
+++ I+GR GKSSL A+ I+ GT D +DI
Sbjct: 179 IKIAIIGRPNVGKSSLINAILGEERVIVSDIAGT-TRDSIDI 219
Score = 29.5 bits (67), Expect = 6.4
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 215 VGIVGRTGAGKSSLTLALFR----IIEPADGTIIIDGVDI 250
+ I+GR GKSSL A+ I+ GT D +DI
Sbjct: 181 IAIIGRPNVGKSSLINAILGEERVIVSDIAGT-TRDSIDI 219
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 30.1 bits (68), Expect = 3.7
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTI 523
++G++GR GAGKS+L L + P G I
Sbjct: 340 RIGLLGRNGAGKSTLIKLLAGELAPVSGEI 369
Score = 30.1 bits (68), Expect = 4.1
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTI 243
+G++GR GAGKS+L L + P G I
Sbjct: 341 IGLLGRNGAGKSTLIKLLAGELAPVSGEI 369
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 29.7 bits (67), Expect = 3.8
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETD----DLIQSTIRSEFAHCTVLTI 404
+G + QR +I LA LL + +I DE T +D+ DL++S ++ +L +
Sbjct: 142 SGGMLQRMMIALA--LLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR--ALGMLLV 197
Query: 405 AHRLNTIID-SDRVLVLDKGLVVE 427
H + + +D V V+ G +VE
Sbjct: 198 THDMGVVARLADDVAVMSHGRIVE 221
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 29.1 bits (65), Expect = 4.5
Identities = 16/63 (25%), Positives = 23/63 (36%)
Query: 211 GLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLA 270
G V + G +G GK+SL L + A G + LR L + + LA
Sbjct: 23 GPPSVLLTGPSGTGKTSLLRELLEGLLVAAGKCDQAERNPPYAFSQALRELLRQLLRELA 82
Query: 271 TIF 273
Sbjct: 83 AEL 85
>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE. TrmE,
also called MnmE and previously designated ThdF
(thiophene and furan oxidation protein), is a GTPase
involved in tRNA modification to create
5-methylaminomethyl-2-thiouridine in the wobble position
of some tRNAs. This protein and GidA form an
alpha2/beta2 heterotetramer [Protein synthesis, tRNA and
rRNA base modification].
Length = 442
Score = 29.8 bits (67), Expect = 5.1
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 5/62 (8%)
Query: 365 LRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGL 424
+RK+ + +L + ID E DD Q ++ +L+I L I++S ++ LD G
Sbjct: 150 IRKSLLQLLAQVEVNIDYEEDDDEQDSLNQL-----LLSIIAELKDILNSYKLEKLDDGF 204
Query: 425 VV 426
+
Sbjct: 205 KL 206
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 30.0 bits (68), Expect = 5.3
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 353 GQRQLICLARALLRKTK---ILILDEATAAIDLETDD---LIQSTIRSEFAHCTVLTIAH 406
G+ Q I LA+ L +++ + ILDE T L DD L++ R TV+ I H
Sbjct: 833 GEAQRIKLAKELSKRSTGRTLYILDEPTTG--LHFDDIKKLLEVLQRLVDKGNTVVVIEH 890
Query: 407 RLNTIIDSDRVLVL 420
L+ I +D ++ L
Sbjct: 891 NLDVIKTADYIIDL 904
>gnl|CDD|222970 PHA03072, PHA03072, putative viral membrane protein; Provisional.
Length = 190
Score = 28.9 bits (65), Expect = 5.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 277 YSTPVFIFVIVPVSVLYFFIQVS 299
ST +F +I+ +SVL + Q S
Sbjct: 29 TSTLIFFVIILAISVLLLWFQTS 51
>gnl|CDD|218208 pfam04677, CwfJ_C_1, Protein similar to CwfJ C-terminus 1. This
region is found in the N terminus of Schizosaccharomyces
pombe protein CwfJ. CwfJ is part of the Cdc5p complex
involved in mRNA splicing.
Length = 122
Score = 28.1 bits (63), Expect = 5.8
Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 9/55 (16%)
Query: 398 HCTVLTIAHRLNTIIDSDRV----LVLDKGLVVEFDSPSVLMKNKASIFYSMAKD 448
HC ++ I H +T+ + V K L + + S + K ++F+ +A
Sbjct: 48 HCLIIPIQHIPSTLSLDEEVWDEIRNFRKALTLMYKS-----QGKDAVFFEIASQ 97
>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase
HydF. This model describes the family of the [Fe]
hydrogenase maturation protein HypF as characterized in
Chlamydomonas reinhardtii and found, in an operon with
radical SAM proteins HydE and HydG, in numerous
bacteria. It has GTPase activity, can bind an 4Fe-4S
cluster, and is essential for hydrogenase activity
[Protein fate, Protein modification and repair].
Length = 391
Score = 29.4 bits (67), Expect = 5.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 215 VGIVGRTGAGKSSLTLALFR 234
+GI GR AGKSSL AL
Sbjct: 9 IGIFGRRNAGKSSLINALTG 28
Score = 29.4 bits (67), Expect = 5.8
Identities = 12/20 (60%), Positives = 13/20 (65%)
Query: 495 VGIVGRTGAGKSSLTLALFR 514
+GI GR AGKSSL AL
Sbjct: 9 IGIFGRRNAGKSSLINALTG 28
>gnl|CDD|226865 COG4458, SrfC, Uncharacterized protein conserved in bacteria,
putative virulence factor [Function unknown].
Length = 821
Score = 29.5 bits (66), Expect = 6.2
Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 12/75 (16%)
Query: 446 AKDAGLAWL------AVRLETVGNLITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVG 499
+ + W+ AVRL+ + +L L + A + ++ M VG G
Sbjct: 15 SAQDAIDWVGNTRANAVRLDDE------ADSLEQHLRRSRNAARKLMEAIDRPMCVGFFG 68
Query: 500 RTGAGKSSLTLALFR 514
+ AGKS L AL
Sbjct: 69 PSQAGKSHLISALAA 83
>gnl|CDD|237018 PRK11905, PRK11905, bifunctional proline
dehydrogenase/pyrroline-5-carboxylate dehydrogenase;
Reviewed.
Length = 1208
Score = 29.4 bits (67), Expect = 6.2
Identities = 16/36 (44%), Positives = 18/36 (50%), Gaps = 11/36 (30%)
Query: 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
L+CLA ALLR I D AT D LI+ I
Sbjct: 85 LMCLAEALLR-----IPDTATR------DALIRDKI 109
>gnl|CDD|222165 pfam13481, AAA_25, AAA domain. This AAA domain is found in a wide
variety of presumed DNA repair proteins.
Length = 154
Score = 28.4 bits (64), Expect = 6.5
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 213 ELVGIVGRTGAGKSSLTLAL 232
L + G G GKS+L L L
Sbjct: 34 GLTLLAGAPGTGKSTLALDL 53
>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35). Rab35 is one of
several Rab proteins to be found to participate in the
regulation of osteoclast cells in rats. In addition,
Rab35 has been identified as a protein that interacts
with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK)
in human cells. Overexpression of NPM-ALK is a key
oncogenic event in some anaplastic large-cell lymphomas;
since Rab35 interacts with N|PM-ALK, it may provide a
target for cancer treatments. GTPase activating proteins
(GAPs) interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab proteins.
Length = 199
Score = 28.7 bits (64), Expect = 7.0
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 13/55 (23%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGT-----IIIDGVD--IRTLGLHTLRSRLTI 264
I+G +G GKSSL ++ AD T I GVD IRT+ ++ R +L I
Sbjct: 11 IIGDSGVGKSSL------LLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQI 59
Score = 28.7 bits (64), Expect = 7.0
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 13/55 (23%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGT-----IIIDGVD--IRTLGLHTLRSRLTI 544
I+G +G GKSSL ++ AD T I GVD IRT+ ++ R +L I
Sbjct: 11 IIGDSGVGKSSL------LLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQI 59
>gnl|CDD|238815 cd01637, IMPase_like, Inositol-monophosphatase-like domains. This
family of phosphatases is dependent on bivalent metal
ions such as Mg++, and many members are inhibited by Li+
(which is thought to displace a bivalent ion in the
active site). Substrates include
fructose-1,6-bisphosphate, inositol poly- and
monophosphates, PAP and PAPS,
sedoheptulose-1,7-bisphosphate and probably others.
Length = 238
Score = 28.8 bits (65), Expect = 8.1
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Query: 374 DEATAAIDLETDDLIQSTIRSEFAHCTVLTI-AHRLNTIIDSDRVLVLD 421
D T A DL ++LI +++ F +L + D RV V+D
Sbjct: 33 DLVTEA-DLAAEELIVDVLKALFPDDGILGEEGGGSGNVSDGGRVWVID 80
>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc
(COR) domain family. RocCOR (or Roco) protein family is
characterized by a superdomain containing a Ras-like
GTPase domain, called Roc (Ras of complex proteins), and
a characteristic second domain called COR (C-terminal of
Roc). A kinase domain and diverse regulatory domains are
also often found in Roco proteins. Their functions are
diverse; in Dictyostelium discoideum, which encodes 11
Roco proteins, they are involved in cell division,
chemotaxis and development, while in human, where 4 Roco
proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded,
these proteins are involved in epilepsy and cancer.
Mutations in LRRK2 (leucine-rich repeat kinase 2) are
known to cause familial Parkinson's disease.
Length = 161
Score = 28.1 bits (63), Expect = 8.6
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 493 MQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532
++ +VG+ G GK+SL L D G++++
Sbjct: 2 AKLMLVGQGGVGKTSLCKQLIGEKFDGD-ESSTHGINVQD 40
>gnl|CDD|146144 pfam03356, Pox_LP_H2, Viral late protein H2. All Members of this
family show similarity to the vaccinia virus late
protein H2. This protein is often referred to by its
gene name of H2R. Members from this family all belong to
the viral taxon Poxviridae.
Length = 189
Score = 28.5 bits (64), Expect = 8.9
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 277 YSTPVFIFVIVPVSVLYFFIQVS 299
ST +F +I+ +SVL F+ Q S
Sbjct: 29 TSTLIFFVLILLISVLLFWFQTS 51
>gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase.
Length = 656
Score = 29.1 bits (65), Expect = 8.9
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 18/69 (26%)
Query: 210 EGLELVGIVGRTGAGKSSLT---------LALFRIIEPADGTIIIDG-------VDIRTL 253
+G+ LVG+ G +GAGK+ T +A+ + D + IIDG D TL
Sbjct: 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTL 122
Query: 254 --GLHTLRS 260
+H L++
Sbjct: 123 LDNIHDLKA 131
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 28.4 bits (63), Expect = 9.1
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHR 407
GQ++ + L R + K K+ +LDE A+D + I + I+ A VL +H+
Sbjct: 131 GQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQ 186
>gnl|CDD|234011 TIGR02782, TrbB_P, P-type conjugative transfer ATPase TrbB. The
TrbB protein is found in the trb locus of Agrobacterium
Ti plasmids where it is involved in the type IV
secretion system for plasmid conjugative transfer. TrbB
is a homolog of the vir system VirB11 ATPase , and the
Flp pilus sytem ATPase TadA [Cellular processes,
Conjugation].
Length = 299
Score = 28.6 bits (64), Expect = 9.2
Identities = 32/95 (33%), Positives = 45/95 (47%), Gaps = 16/95 (16%)
Query: 493 MQVGIVGRTGAGKSSLTLALF-RIIE--PADGTIIIDGVDIRTL-----GLHTLRSRLTI 544
+ +VG TG+GK++L AL I + P D +II+ D R L + LR+
Sbjct: 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIE--DTRELQCAAPNVVQLRTSDDA 190
Query: 545 IPQDPVLFSGTLRLNLD--PVGESSDEAIWKALEL 577
I +L + TLRL D VGE AL+L
Sbjct: 191 ISMTRLLKA-TLRLRPDRIIVGEVRGGE---ALDL 221
>gnl|CDD|238899 cd01918, HprK_C, HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates
the utilization of carbon sources by gram-positive
bacteria. It catalyzes both the ATP-dependent
phosphorylation of Ser-46 of HPr and its
dephosphorylation by phosphorolysis. The latter reaction
uses inorganic phosphate as substrate and produces
pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK)
and the C-terminal catalytic domain of HprK/P are
structurally similar with conserved active site residues
suggesting these two phosphotransferases have related
functions. The HprK/P N-terminal domain is structurally
similar to the N-terminal domains of the MurE and MurF
amino acid ligases.
Length = 149
Score = 28.0 bits (63), Expect = 9.3
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 479 TLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLAL----FRIIEPADGTIIIDGVDIRTLG 534
T++ LV + + V I G +G GKS L L L R++ AD +++ R +G
Sbjct: 4 TVHGVLVEV---GGIGVLITGPSGIGKSELALELIKRGHRLV--ADDRVVVKREGGRLVG 58
>gnl|CDD|145542 pfam02456, Adeno_IVa2, Adenovirus IVa2 protein. IVa2 protein can
interact with the adenoviral packaging signal and that
this interaction involves DNA sequences that have
previously been demonstrated to be required for
packaging. During the course of lytic infection, the
adenovirus major late promoter (MLP) is induced to high
levels after replication of viral DNA has started. IVa2
is a transcriptional activator of the major late
promoter.
Length = 370
Score = 28.9 bits (65), Expect = 9.3
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 488 SVSYAMQ--VGIV-GRTGAGKSSLTLAL--FRIIEPADGTII 524
S++Y +Q +G+V G TG GKS L L ++I+P T+
Sbjct: 80 SLNYGLQPVIGVVYGPTGCGKSQLLRNLLSCQLIQPIPETVF 121
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 29.0 bits (65), Expect = 9.4
Identities = 22/88 (25%), Positives = 40/88 (45%), Gaps = 7/88 (7%)
Query: 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTV 401
F E TG Q++ LA+ L + +L++DE A +D T + I + A T+
Sbjct: 505 FSELSTG---QKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITL 561
Query: 402 LTIAHRLNTI--IDSDRVLVLDKGLVVE 427
+ + HR + D ++++ G V
Sbjct: 562 IVVTHRPEVGNALRPDTLILVGYGKVPV 589
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.138 0.398
Gapped
Lambda K H
0.267 0.0534 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,115,201
Number of extensions: 3179938
Number of successful extensions: 5139
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4901
Number of HSP's successfully gapped: 1042
Length of query: 602
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 500
Effective length of database: 6,413,494
Effective search space: 3206747000
Effective search space used: 3206747000
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 62 (28.1 bits)