RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3001
(602 letters)
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 312 bits (801), Expect = e-101
Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 53/285 (18%)
Query: 185 NDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLTL 230
+ K D WP G++ KD +Y EG + G++GRTG+GKS+L
Sbjct: 6 SHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 231 ALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVS 290
A R++ +G I IDGV ++ L R ++P
Sbjct: 66 AFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFG----------------------VIP-- 100
Query: 291 VLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETV 348
Q IF+ + + P S+ + + VA L+ + + P F
Sbjct: 101 ------QKVFIFSGTFR-KNLDPNAAHSDQEIWKVADEVGLR--SVIEQFPGKLDFVLVD 151
Query: 349 TGN---VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405
G G +QL+CLAR++L K KIL+LDE +A +D T +I+ T++ FA CTV+
Sbjct: 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCE 211
Query: 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAG 450
R+ +++ D+ LV+++ V ++DS L A F + +
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSP 256
Score = 201 bits (513), Expect = 4e-59
Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
VG++GRTG+GKS+L A R++ +G I IDGV ++ L R +IPQ +FSG
Sbjct: 50 VGLLGRTGSGKSTLLSAFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSG 108
Query: 555 TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T R NLDP SD+ IWK + L + + P +L + +GG L
Sbjct: 109 TFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVL 156
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 114 bits (289), Expect = 4e-27
Identities = 40/111 (36%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V ++G TG+GKS+L + R+I+P G + +D +D+RT+ L LR ++ +PQ+ VLFSG
Sbjct: 372 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG 431
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T++ NL +++D+ I +A ++A ++ F+ +LP V GG N
Sbjct: 432 TIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNF 480
Score = 96.9 bits (242), Expect = 3e-21
Identities = 29/85 (34%), Positives = 53/85 (62%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q + +ARAL++K K+LILD+ T+++D T+ I ++ CT I ++ T +
Sbjct: 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL 542
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKN 437
+D++LVL +G V F + L+++
Sbjct: 543 LADKILVLHEGKVAGFGTHKELLEH 567
Score = 77.2 bits (191), Expect = 5e-15
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 166 VAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGLELV---------- 215
+ +R+ E + +G V F++ + RY E + V
Sbjct: 311 ASAKRVLEVLNE--KPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKP 368
Query: 216 ----GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
++G TG+GKS+L + R+I+P G + +D +D+RT+ L LR ++ +PQ
Sbjct: 369 GSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQ 424
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 107 bits (270), Expect = 2e-26
Identities = 38/93 (40%), Positives = 60/93 (64%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ I +ARAL+ KILI DEAT+A+D E++ +I + TV+ IAHRL+T+
Sbjct: 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445
++DR++V++KG +VE L+ S++ +
Sbjct: 209 NADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Score = 99.5 bits (249), Expect = 1e-23
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ ++ QD VL +
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR 97
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++ N+ +P S E + A +LA + F+S L V E G L
Sbjct: 98 SIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGL 146
Score = 73.7 bits (182), Expect = 7e-15
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 196 KGEVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADG 241
++ F++ + RY+ E++GIVGR+G+GKS+LT + R P +G
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 242 TIIIDGVDIRTLGLHTLRSRLTIIPQ 267
++IDG D+ + LR ++ ++ Q
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQ 90
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 105 bits (265), Expect = 6e-26
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ G +G GKS++ L R +P G I IDG I + L RS++ + QD + +G
Sbjct: 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG 90
Query: 555 TLRLNLD--PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+R NL G+ +DE +W+ L+LA +FV N+P +L EV E G +
Sbjct: 91 TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140
Score = 102 bits (256), Expect = 1e-24
Identities = 35/75 (46%), Positives = 53/75 (70%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ + +ARA LR KIL+LDEATA++D E++ ++Q + S T L IAHRL+TI+
Sbjct: 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV 202
Query: 413 DSDRVLVLDKGLVVE 427
D+D++ ++KG +
Sbjct: 203 DADKIYFIEKGQITG 217
Score = 63.3 bits (155), Expect = 2e-11
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
++ G +G GKS++ L R +P G I IDG I + L RS++ + Q
Sbjct: 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQ 83
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 109 bits (274), Expect = 6e-25
Identities = 37/95 (38%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q I +ARAL+R KIL+LDEAT+A+D E++ ++Q+ + T + IAHRL+T+
Sbjct: 530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR 589
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
++D + D G++VE + LM+ K I++ +
Sbjct: 590 NADVIAGFDGGVIVEQGNHDELMREK-GIYFKLVM 623
Score = 109 bits (274), Expect = 7e-25
Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q I +ARAL+R+ IL+LDEAT+A+D E++ ++Q + T + IAHRL+TI
Sbjct: 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ 1234
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
++D ++V+ G V E + L+ K I++SM
Sbjct: 1235 NADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMVS 1268
Score = 103 bits (258), Expect = 7e-23
Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ +VG +G GKS++ L R +P G++ +DG +I+ L + LR++L I+ Q+P+LF
Sbjct: 1062 LALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC 1121
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++ N+ D S E I +A + A+++ F+ +LP + V + G L
Sbjct: 1122 SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172
Score = 91.3 bits (227), Expect = 4e-19
Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG +G GKS+ + R+ +P DG + IDG DIRT+ + LR + ++ Q+PVLF+
Sbjct: 419 VALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT 478
Query: 555 TLRLNLDPVG--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N+ G + + + I KA++ A+ F+ LP + V E G L
Sbjct: 479 TIAENIR-YGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQL 527
Score = 63.1 bits (154), Expect = 2e-10
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 186 DKKPKDEWPEKGEVEFKDYKVRY--R------EGLEL-------VGIVGRTGAGKSSLTL 230
+ +G V+F Y R +GL L + +VG +G GKS++
Sbjct: 1018 STQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQ 1077
Query: 231 ALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
L R +P G++ +DG +I+ L + LR++L I+ Q
Sbjct: 1078 LLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114
Score = 59.7 bits (145), Expect = 2e-09
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 19/97 (19%)
Query: 196 KGEVEFKDYKVRY--R------EGLEL-------VGIVGRTGAGKSSLTLALFRIIEPAD 240
+G +EFK+ Y R +GL L V +VG +G GKS+ + R+ +P D
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQ--VL--ATIF 273
G + IDG DIRT+ + LR + ++ Q VL TI
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIA 481
Score = 43.9 bits (104), Expect = 2e-04
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 66 VLYLMPVTITVFFYGFV-ISLGTLFA---AKRLHEKLLKSMLRWSPLFFDTTPVGRVLSR 121
Y + V ++ +S L A ++ +K +++ +FD VG + +R
Sbjct: 111 AYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTR 170
Query: 122 FSSDVNTL 129
+ DV+ +
Sbjct: 171 LTDDVSKI 178
Score = 35.4 bits (82), Expect = 0.067
Identities = 15/84 (17%), Positives = 31/84 (36%), Gaps = 19/84 (22%)
Query: 6 SIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDS----NLPTFLRSWIN 61
+ R + I++ + +FD VG + +R + DV ++ + F ++
Sbjct: 136 AGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQA--- 192
Query: 62 CLFSVLYLMPVTITVFFYGFVISL 85
+ FF GF+I
Sbjct: 193 ------------MATFFGGFIIGF 204
Score = 32.7 bits (75), Expect = 0.39
Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
Query: 35 GRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTITVFFYGFVISLGTLFAAK-- 92
+++ F+ + P R N LFS+L+L+ I+ +
Sbjct: 729 SKVVGVFT------NGGPPETQRQNSN-LFSLLFLILGIISFITFFLQGFTFGKAGEILT 781
Query: 93 -RLHEKLLKSMLRWSPLFFDTT--PVGRVLSRFSSDVNTL 129
RL + KSMLR +FD G + +R ++D +
Sbjct: 782 KRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQV 821
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 103 bits (258), Expect = 2e-24
Identities = 28/75 (37%), Positives = 54/75 (72%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
G++Q + +AR +L+ I++LDEAT+A+D + IQ+++ A+ T + +AHRL+T++
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253
Query: 413 DSDRVLVLDKGLVVE 427
++D++LV+ G +VE
Sbjct: 254 NADQILVIKDGCIVE 268
Score = 101 bits (254), Expect = 5e-24
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ +VG +GAGKS++ LFR + + G I IDG DI + +LRS + ++PQD VLF+
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE------GGE 600
T+ N+ + ++ + A + A ++ + P + +V E GGE
Sbjct: 143 TIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE 195
Score = 75.0 bits (185), Expect = 7e-15
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 149 QTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKK-PKDEWPEKGEVEFKDYKVR 207
+ + + +E + + + E V D +KG +EF++
Sbjct: 6 HHHHHSSGLVPRGSHMFIDMENMFDLLKEETE---VKDLPGAGPLRFQKGRIEFENVHFS 62
Query: 208 YREGLEL-------------VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG 254
Y +G E + +VG +GAGKS++ LFR + + G I IDG DI +
Sbjct: 63 YADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT 122
Query: 255 LHTLRSRLTIIPQ 267
+LRS + ++PQ
Sbjct: 123 QASLRSHIGVVPQ 135
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 101 bits (253), Expect = 3e-24
Identities = 34/86 (39%), Positives = 57/86 (66%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
G+RQ I +AR LL+ KI+I DEAT+++D +T+ L Q + + T++ IAHRL+TI
Sbjct: 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS 218
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNK 438
++ +++L+KG +VE + L+K
Sbjct: 219 SAESIILLNKGKIVEKGTHKDLLKLN 244
Score = 96.9 bits (242), Expect = 9e-23
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+VG TG+GKS++ L+R + +G I I G ++ +++RS + I+PQD +LF+
Sbjct: 49 CALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE 107
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T++ N+ +++DE + KA + A L F+ LP + V G L
Sbjct: 108 TIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156
Score = 64.9 bits (159), Expect = 7e-12
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 16/87 (18%)
Query: 196 KGEVEFKDYKVRYREGLEL---------------VGIVGRTGAGKSSLTLALFRIIEPAD 240
+EF D Y + +VG TG+GKS++ L+R + +
Sbjct: 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-E 73
Query: 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
G I I G ++ +++RS + I+PQ
Sbjct: 74 GDIKIGGKNVNKYNRNSIRSIIGIVPQ 100
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 105 bits (264), Expect = 6e-24
Identities = 33/75 (44%), Positives = 51/75 (68%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q + +AR L ILILDEAT+A+DLE++ +IQ + T L +AHRL+TI
Sbjct: 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT 540
Query: 413 DSDRVLVLDKGLVVE 427
+D+++V++ G +VE
Sbjct: 541 HADKIVVIENGHIVE 555
Score = 99.6 bits (249), Expect = 3e-22
Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V VG +G GKS+L + R + G I+IDG +I+ +LR+++ ++ QD +LFS
Sbjct: 370 VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD 429
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T++ N+ P ++DE + +A ++A+ + F+ NLP EV E G L
Sbjct: 430 TVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478
Score = 84.5 bits (210), Expect = 2e-17
Identities = 46/316 (14%), Positives = 101/316 (31%), Gaps = 76/316 (24%)
Query: 26 MSFFDTTPVGRMISRFSQDV----ETVDSNLPTFLRS------------WINCLFSVLYL 69
F+ VG++ISR DV + + + L +++ ++ L
Sbjct: 109 ARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAAL 168
Query: 70 MPVTITVFF-YGFVISLGTLFAAKR---------LHE----------------------- 96
+ Y F L L + LHE
Sbjct: 169 FIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDK 228
Query: 97 ---KLLKSMLRWSPLFFDTTPVGRVLSRFSSDV-------NTLDNKLTLSVQQT-LSQPF 145
L L+ + + ++ + + +T+ +
Sbjct: 229 KNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLE 288
Query: 146 KITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYK 205
+ L LV + + + +++R+ + + + + N + ++G ++
Sbjct: 289 LLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK--NGVGAQPIEIKQGRIDIDHVS 346
Query: 206 VRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
+Y + E V VG +G GKS+L + R + G I+IDG +I+
Sbjct: 347 FQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIK 406
Query: 252 TLGLHTLRSRLTIIPQ 267
+LR+++ ++ Q
Sbjct: 407 DFLTGSLRNQIGLVQQ 422
Score = 44.9 bits (107), Expect = 6e-05
Identities = 19/150 (12%), Positives = 43/150 (28%), Gaps = 7/150 (4%)
Query: 11 KGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLM 70
+ ++ I+ + + I + L I + +
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI- 72
Query: 71 PVTITVFFYGFVISLGTLFAAK---RLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVN 127
+ L + K + +KL + S F+ VG+V+SR +DV
Sbjct: 73 ---VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVE 129
Query: 128 TLDNKLTLSVQQTLSQPFKITQTLNWLVRM 157
+ + + I L+ + +
Sbjct: 130 QTKDFILTGLMNIWLDCITIIIALSIMFFL 159
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 104 bits (263), Expect = 8e-24
Identities = 40/95 (42%), Positives = 59/95 (62%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q I +ARALL+ KIL+LDEAT+A+D E + L+Q + TVL IAHRL+TI
Sbjct: 487 GQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIK 546
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
+++ V VLD+G + E+ L+ I+ +
Sbjct: 547 NANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMN 581
Score = 96.5 bits (241), Expect = 4e-21
Identities = 40/112 (35%), Positives = 60/112 (53%), Gaps = 4/112 (3%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+VG +G+GKS++ L R+ +PA GTI +DG DIR L LRS++ + Q+P+LFS
Sbjct: 373 TALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSC 432
Query: 555 TLRLN----LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++ N D + E I + E+A+ F+ N P V E G L
Sbjct: 433 SIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLL 484
Score = 64.5 bits (158), Expect = 5e-11
Identities = 34/118 (28%), Positives = 55/118 (46%), Gaps = 16/118 (13%)
Query: 165 IVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRY--R------EGLEL-- 214
+ A R+ E E + + ++ +G +EFK+ Y R + L
Sbjct: 309 LGAGGRLWELLEREPKLPFNEGVILNEK-SFQGALEFKNVHFAYPARPEVPIFQDFSLSI 367
Query: 215 -----VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
+VG +G+GKS++ L R+ +PA GTI +DG DIR L LRS++ + Q
Sbjct: 368 PSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKIGTVSQ 425
Score = 47.6 bits (114), Expect = 9e-06
Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 7/105 (6%)
Query: 34 VGRMISRF-SQDVETVDSNLPTFLRSWINCLFSVLYLMPVTITVFFYGFVISLGTLFAAK 92
+G++I + NL S ++L + + G
Sbjct: 42 LGKIIDVIYTNPTVDYSDNLTRLC-----LGLSAVFLCGAAANAIRVYLMQTSGQRIVN- 95
Query: 93 RLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLSV 137
RL L S+LR FFD T G +++R SSD L +T ++
Sbjct: 96 RLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENL 140
Score = 40.7 bits (96), Expect = 0.001
Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 19/96 (19%)
Query: 8 RASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDV----ETVDSNLPTFLRSWINCL 63
R L + +IL ++FFD T G +I+R S D +V NL LR+
Sbjct: 92 RIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQAS 151
Query: 64 FSVLYLM---------------PVTITVFFYGFVIS 84
+ + PV+I YG +
Sbjct: 152 VGISMMFFVSPNLATFVLSVVPPVSIIAVIYGRYLR 187
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 104 bits (261), Expect = 1e-23
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ + +ARALLR +LILDEAT+A+D E++ IQ+ + + TVL IAHRL+TI
Sbjct: 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE 543
Query: 413 DSDRVLVLDKGLVVE 427
+D +LV+D+G ++E
Sbjct: 544 QADEILVVDEGEIIE 558
Score = 102 bits (256), Expect = 5e-23
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VGR+G+GKS++ R + G+I +DG D+R L LR ++ Q+ LF+
Sbjct: 372 VALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND 431
Query: 555 TLRLN--LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N GE + E I +A AH F+ N+P L + E G +L
Sbjct: 432 TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481
Score = 73.8 bits (182), Expect = 6e-14
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 147 ITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKV 206
+ + L L +TS+ + + A + + + E + N K + GEV+ KD
Sbjct: 294 LMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD--NGKYEAE--RVNGEVDVKDVTF 349
Query: 207 RYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
Y+ + V +VGR+G+GKS++ R + G+I +DG D+R
Sbjct: 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409
Query: 253 LGLHTLRSRLTIIPQ 267
L LR ++ Q
Sbjct: 410 YKLTNLRRHFALVSQ 424
Score = 45.6 bits (109), Expect = 3e-05
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 64 FSVLYLMPVTITVFFY--GFVISLGTLFAA-------KRLHEKLLKSMLRWSPLFFDTTP 114
+ L ++P I + G + + ++ +L + FFD
Sbjct: 61 SNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQES 120
Query: 115 VGRVLSRFSSDVNTLDNKLTLSVQQTLSQPFKI 147
G +LSR + D + + ++ + + I
Sbjct: 121 TGGLLSRITYDSEQVAGATSRALVSIVREGASI 153
Score = 40.6 bits (96), Expect = 0.001
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 17 VLRNILHSCMSFFDTTPVGRMISRFSQDVETVD----SNLPTFLRSWINCLFSVLYLM-- 70
+ + +H + FFD G ++SR + D E V L + +R + + + +
Sbjct: 104 LFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWN 163
Query: 71 --PVTITVFFYGFVISLGTLFAAKRL 94
+++ + V++ F +KR
Sbjct: 164 SWQLSLVLIVVAPVVAFAISFVSKRF 189
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 103 bits (260), Expect = 2e-23
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VGR+G+GKS++ + R + +G I++DG D+R L +LR+++ ++ Q+ LF+
Sbjct: 372 VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND 431
Query: 555 TLRLN--LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N E S E I +A +A+ F++ + L + E G L
Sbjct: 432 TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481
Score = 103 bits (259), Expect = 2e-23
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ I +ARALLR + ILILDEAT+A+D E++ IQ+ + + T L IAHRL+TI
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 413 DSDRVLVLDKGLVVE 427
+D ++V++ G++VE
Sbjct: 544 QADEIVVVEDGIIVE 558
Score = 74.2 bits (183), Expect = 5e-14
Identities = 29/135 (21%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 147 ITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKV 206
+ + L L + + + + A + + ++ QE D+ + G++EF++
Sbjct: 294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK----DEGKRVIDRATGDLEFRNVTF 349
Query: 207 RYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
Y + V +VGR+G+GKS++ + R + +G I++DG D+R
Sbjct: 350 TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 409
Query: 253 LGLHTLRSRLTIIPQ 267
L +LR+++ ++ Q
Sbjct: 410 YTLASLRNQVALVSQ 424
Score = 46.4 bits (111), Expect = 2e-05
Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 18/112 (16%)
Query: 52 LPTFLRSWINCLF-----SVLYLMPVTITVFFYGFVISLGTLFAA-----------KRLH 95
+ + L+ ++ F SVL MP+ + + + + ++ +
Sbjct: 44 MLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLM--ILRGITSYISSYCISWVSGKVVMTMR 101
Query: 96 EKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLSVQQTLSQPFKI 147
+L M+ FFD G +LSR + D + + + ++ + + I
Sbjct: 102 RRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASI 153
Score = 41.8 bits (99), Expect = 6e-04
Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 17 VLRNILHSCMSFFDTTPVGRMISRFSQDVETVD----SNLPTFLRSWINCLFSVLYLM-- 70
+ +++ ++FFD G ++SR + D E V L T +R + + + +
Sbjct: 104 LFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY 163
Query: 71 --PVTITVFFYGFVISLGTLFAAKRL 94
++I + ++S+ +KR
Sbjct: 164 SWQLSIILVVLAPIVSIAIRVVSKRF 189
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 99.1 bits (248), Expect = 2e-23
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI--RSEFAHCTVLTIAHRLNT 410
GQRQ + LARAL+RK ++LILD AT+A+D +Q + E+A TVL I +L+
Sbjct: 160 GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL 219
Query: 411 IIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
+ +L L +G V E + LM+ + SM +
Sbjct: 220 AERAHHILFLKEGSVCEQGTHLQLMERG-GCYRSMVE 255
Score = 89.9 bits (224), Expect = 3e-20
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+VG G+GKS++ L + +P G +++DG + H L +++ + Q+P+LF
Sbjct: 48 TALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR 107
Query: 555 TLRLNLD--PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ R N+ + E I + + F+S P EV E G L
Sbjct: 108 SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQL 157
Score = 61.8 bits (151), Expect = 8e-11
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 196 KGEVEFKDYKVRY--R------EGLEL-------VGIVGRTGAGKSSLTLALFRIIEPAD 240
KG V+F+D Y +GL +VG G+GKS++ L + +P
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQ--VL--ATIF 273
G +++DG + H L +++ + Q +L +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFR 110
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 97.2 bits (243), Expect = 2e-21
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQL+ + RA L KILILDEAT+ +D +T+ IQ+ + T + IAHRLNTI
Sbjct: 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIK 554
Query: 413 DSDRVLVLDKGLVVE 427
++D ++VL G +VE
Sbjct: 555 NADLIIVLRDGEIVE 569
Score = 92.2 bits (230), Expect = 8e-20
Identities = 41/111 (36%), Positives = 70/111 (63%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG TG+GK+++ L R + G I++DG+DIR + +LRS + I+ QD +LFS
Sbjct: 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST 443
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T++ NL +P ++DE I +A +L H + F+ +LP + +++ GE+L
Sbjct: 444 TVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492
Score = 75.3 bits (186), Expect = 2e-14
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 16/134 (11%)
Query: 147 ITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKV 206
T+ LN L + ++ + + ERI E + +E +D + +GE+EFK+
Sbjct: 306 FTRPLNELSNQFNMIQMALASAERIFEILDLEEE---KDDPDAVELREVRGEIEFKNVWF 362
Query: 207 RYREGLEL-------------VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
Y + + V +VG TG+GK+++ L R + G I++DG+DIR +
Sbjct: 363 SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI 422
Query: 254 GLHTLRSRLTIIPQ 267
+LRS + I+ Q
Sbjct: 423 KRSSLRSSIGIVLQ 436
Score = 46.0 bits (110), Expect = 3e-05
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 59 WINCLFSVLYLMPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRV 118
+ +Y + + + G ++ + RL ++L + + R FFD TP G +
Sbjct: 78 RYMLILGTIYALTS-LLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDI 136
Query: 119 LSRFSSDVNTLDNKLTLSVQQTLSQPFKITQTL 151
+SR +DV+ ++N L S+ Q S + +
Sbjct: 137 ISRVINDVDNINNVLGNSIIQFFSGIVTLAGAV 169
Score = 37.9 bits (89), Expect = 0.010
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 26 MSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTITVFFYGFVISL 85
+ FFD TP G +ISR DV+ +++ S I ++ L I +F ++SL
Sbjct: 125 VGFFDRTPHGDIISRVINDVDNINN---VLGNSIIQFFSGIVTLAGAVIMMFRVNVILSL 181
Query: 86 GTL 88
TL
Sbjct: 182 VTL 184
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 95.9 bits (239), Expect = 6e-21
Identities = 60/409 (14%), Positives = 127/409 (31%), Gaps = 61/409 (14%)
Query: 197 GEVEFKDYKV-RYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL 255
FK +++ R G +++G+VG G GKS+ L +P G +
Sbjct: 88 SANSFKLHRLPTPRPG-QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY 146
Query: 256 HTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC 315
++L + Q +K +
Sbjct: 147 FRGSELQNYFTKMLED--------DIKAI---------IKPQYVDNIPRAIKGPVQKVGE 189
Query: 316 SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDE 375
R + + ++ + + E ++G G+ Q + + +++ + + DE
Sbjct: 190 LLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSG--GELQRFAIGMSCVQEADVYMFDE 247
Query: 376 ATAAIDLETDDLIQSTIRS-EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433
++ +D++ IRS V+ + H L+ + SD V ++ V V
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY---GVV 304
Query: 434 LMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLSKETLNAGLVGLSVSYAM 493
+ ++ D + +R T L A L ++ + S+
Sbjct: 305 TLPASVREGINIFLDGHIPAENLRFRTE-ALQFRIADATEDLQNDSASRAFSYPSLKKTQ 363
Query: 494 Q----------------VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT 537
+ ++G G GK++L L ++P +G I L +
Sbjct: 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPK------LNVSM 417
Query: 538 LRSRLTIIPQDPV--LFSGTLRLNLDPVGESSDEAIW----KALELAHL 580
++ V LF +R G+ + K L + +
Sbjct: 418 KPQKIAPKFPGTVRQLFFKKIR------GQFLNPQFQTDVVKPLRIDDI 460
Score = 74.7 bits (184), Expect = 3e-14
Identities = 43/262 (16%), Positives = 85/262 (32%), Gaps = 52/262 (19%)
Query: 169 ERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSL 228
RI + E Q +G+ + + + E++ ++G G GK++L
Sbjct: 336 FRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDS-EILVMMGENGTGKTTL 394
Query: 229 TLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVP 288
L ++P +G I +++ PQ P F
Sbjct: 395 IKLLAGALKPDEGQDIPKL-------------NVSMKPQ---------KIAPKFPGT--- 429
Query: 289 VSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETV 348
V +F + ++ + P Q ++ + I + +
Sbjct: 430 ---------VRQLFFKKIRGQFLNP------------QFQTDVVKPLRIDDIIDQEVQHL 468
Query: 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAH 406
+G G+ Q + + AL I ++DE +A +D E + IR H T + H
Sbjct: 469 SG--GELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
Query: 407 RLNTIID-SDRVLVLDKGLVVE 427
+D+V+V +
Sbjct: 527 DFIMATYLADKVIVFEGIPSKN 548
Score = 42.7 bits (101), Expect = 3e-04
Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 23/125 (18%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTI-----------IIDGVDIRTLGLHTLRSRLT 543
+G+VG G GKS+ L +P G G +++ L +
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165
Query: 544 IIPQDPVLF------SGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE 597
I + + G ++ + + +++ + L L+ ++ +
Sbjct: 166 AIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKIL----QLENVLKRDIEK 221
Query: 598 --GGE 600
GGE
Sbjct: 222 LSGGE 226
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 90.9 bits (226), Expect = 2e-19
Identities = 61/426 (14%), Positives = 147/426 (34%), Gaps = 67/426 (15%)
Query: 197 GEVEFKDYKVR-YREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL 255
FK + + + ++G++G+ G GK+++ L I P G + +
Sbjct: 10 KVNGFKLFGLPTPKNN-TILGVLGKNGVGKTTVLKILAGEIIPNFG-----DPNSKVGKD 63
Query: 256 HTLRS-RLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF 314
L+ R I F YS + I V I + +
Sbjct: 64 EVLKRFRGKEI----YNYFKELYSNELKI--------------VHKIQYVEYASKFLKGT 105
Query: 315 CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILD 374
+ + ++ + E ++ + +++ ++G G Q + +A +LLR+ + I D
Sbjct: 106 VNEILTKIDERGKKDEVKELLNMTNLWNKDANILSG--GGLQRLLVAASLLREADVYIFD 163
Query: 375 EATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433
+ ++ +D+ + IR + V+ + H L + +D + ++ V
Sbjct: 164 QPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKS 223
Query: 434 L-MKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLSKETLNAGLVGLSVSYA 492
+ + F A + +R + + ++ + L + +
Sbjct: 224 YAARVGINNFLKGYLPA--ENMKIRPDEIKFMLK-EVSDLDLSKDLKTKMKWTKIIKKLG 280
Query: 493 MQ--------------VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 538
+GI+G G GK++ L I +G++ + +
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS------Y 334
Query: 539 RSRLTIIPQDPVLFSGTLRLNL-DPVGES---SDEAIWKALELAHLNTFVSNLPARLQHE 594
+ + I + GT++ L + ++ S + + +L+ + + ++
Sbjct: 335 KPQ--RIFPNY---DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNV----ND 385
Query: 595 VSEGGE 600
+S GGE
Sbjct: 386 LS-GGE 390
Score = 78.9 bits (195), Expect = 1e-15
Identities = 52/317 (16%), Positives = 110/317 (34%), Gaps = 58/317 (18%)
Query: 136 SVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPE 195
SV +S+ + +N ++ E + + IK + + + D K K +W +
Sbjct: 215 SVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTK 274
Query: 196 ----KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
G+ + +EG E++GI+G G GK++ L I +G++ + +
Sbjct: 275 IIKKLGDFQLVVDNGEAKEG-EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS 333
Query: 252 TLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII 311
PQ IF + V K +
Sbjct: 334 YK------------PQ---RIFP------------------NYDGTVQQYLENASKDALS 360
Query: 312 TPFCSNLQRFYVATSRQLKRLESVSRSPIYSHF-GETVTGNVGQRQLICLARALLRKTKI 370
T F+ +++L + + + G G+ Q + +A L ++ +
Sbjct: 361 TS-----SWFFEEVTKRLNLHRLLESNV--NDLSG-------GELQKLYIAATLAKEADL 406
Query: 371 LILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNTIID--SDRVLVLDKGLVV 426
+LD+ ++ +D+E ++ I+ + I H L+ I D +DR++V
Sbjct: 407 YVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEK 465
Query: 427 EFDSPSVLMKNKASIFY 443
+ S + +
Sbjct: 466 AGLATSPVTLKTGMNEF 482
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 89.3 bits (222), Expect = 6e-19
Identities = 67/356 (18%), Positives = 116/356 (32%), Gaps = 65/356 (18%)
Query: 197 GEVEFKDYKV-RYREGLELVGIVGRTGAGKSSLTLALFRIIEP------ADGTIIIDGVD 249
G F Y++ +EG +VGIVG G GKS+ L + P +I
Sbjct: 32 GVNAFVLYRLPVVKEG-MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFR 90
Query: 250 IRTLGLHTLRSR---LTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV 306
L + + + + + + V LI
Sbjct: 91 GNELQNYFEKLKNGEIRPVVK-----------PQ----------------YVDLI----- 118
Query: 307 KPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLR 366
P + L + T + + ++++ + + ++G G+ Q + +A ALLR
Sbjct: 119 -PKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSG--GELQRVAIAAALLR 175
Query: 367 KTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423
DE ++ +D+ IR E +VL + H L + SD + V+
Sbjct: 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGE 234
Query: 424 LVVE--FDSPSVLMKNKASIFYSM----------AKDAGLAWLAVRLETVGNLITFSAAL 471
V F P +N + F + R+E + L
Sbjct: 235 PGVYGIFSQPKGT-RNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRL 293
Query: 472 LAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
+ L + +GIVG G GK++ L + EP +G I D
Sbjct: 294 VKDYGSFRLEV--EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL 347
Score = 56.9 bits (138), Expect = 1e-08
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLE----TDDLIQSTIRSEFAHCTVLTIAHRL 408
G+ Q + +A LLR I +LDE +A +D+E I+ + T L + H +
Sbjct: 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDV 462
Query: 409 NTIID--SDRVLVLDKGLVVE 427
+ID SDR++V +
Sbjct: 463 -LMIDYVSDRLMVFEGEPGKY 482
Score = 44.6 bits (106), Expect = 7e-05
Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 26/123 (21%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEP------ADGTIIIDGVDIRTLGLHTLRSR---LTII 545
VGIVG G GKS+ L + P +I L + + + + +
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV 109
Query: 546 PQ------DPVLFSGTLRLNLDPVGESSD-EAIWKALELAHL-NTFVSNLPARLQHEVSE 597
+ P G + L E+ E + KALEL ++ + +S
Sbjct: 110 VKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI--------QHLS- 160
Query: 598 GGE 600
GGE
Sbjct: 161 GGE 163
Score = 42.7 bits (101), Expect = 3e-04
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 177 TPQEAEWVNDKKPKDEWPE----KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLAL 232
T +++ +P G + ++G E++GIVG G GK++ L
Sbjct: 274 TKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKG-EVIGIVGPNGIGKTTFVKML 332
Query: 233 FRIIEPADGTIIIDG 247
+ EP +G I D
Sbjct: 333 AGVEEPTEGKIEWDL 347
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 89.3 bits (222), Expect = 7e-19
Identities = 64/354 (18%), Positives = 114/354 (32%), Gaps = 61/354 (17%)
Query: 197 GEVEFKDYKVRY-REGLELVGIVGRTGAGKSSLTLALFRIIEP------ADGTIIIDGVD 249
G F Y++ ++G +VGIVG G GK++ L + P +I
Sbjct: 102 GVNAFVLYRLPIVKDG-MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160
Query: 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL 309
L + R + I V+ +V D+ P
Sbjct: 161 GNELQNYFERLKNGEIRPVVKPQYV------------------------------DLLPK 190
Query: 310 IITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTK 369
+ L + + + ++ + + ++G G+ Q + +A ALLRK
Sbjct: 191 AVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSG--GELQRVAIAAALLRKAH 248
Query: 370 ILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNTIID--SDRVLVLDKGLV 425
DE ++ +D+ + IR A+ VL + H L ++D SD + V+
Sbjct: 249 FYFFDEPSSYLDIRQRLKVARVIR-RLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGEPG 306
Query: 426 VEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLSKETLNAGL- 484
V + L VR T + + V + +
Sbjct: 307 VY---GIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRL 363
Query: 485 -----------VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
+ +GIVG G GK++ L + EP +G + D
Sbjct: 364 VKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL 417
Score = 56.5 bits (137), Expect = 2e-08
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
G+ Q + +A LLR I +LDE +A +D+E + IR E T L + H +
Sbjct: 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-L 533
Query: 411 IID--SDRVLVLDKGLVVE 427
+ID SDR++V +
Sbjct: 534 MIDYVSDRLIVFEGEPGRH 552
Score = 42.3 bits (100), Expect = 4e-04
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 148 TQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVR 207
+ N R T + ++ E+ K G + +
Sbjct: 329 LKDENVRFRPYEIRFTKLSERVDVERE----TLVEYPRLVKDY------GSFKLEVEPGE 378
Query: 208 YREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
R+G E++GIVG G GK++ L + EP +G + D
Sbjct: 379 IRKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL 417
Score = 42.3 bits (100), Expect = 4e-04
Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 22/121 (18%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEP------ADGTIIIDGVDIRTLGLHTLRSR---LTII 545
VGIVG G GK++ L + P +I L + R + + +
Sbjct: 120 VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV 179
Query: 546 PQ------DPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
+ P G +R L V E + ++ L + H++S GG
Sbjct: 180 VKPQYVDLLPKAVKGKVRELLKKVDE--VGKFEEVVKELELENVLDREL----HQLS-GG 232
Query: 600 E 600
E
Sbjct: 233 E 233
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 78.8 bits (195), Expect = 2e-16
Identities = 44/273 (16%), Positives = 92/273 (33%), Gaps = 58/273 (21%)
Query: 199 VEFKDYKVRY-------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
++ +G + + G GAGK++L L GT+ +
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKG-DKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 246 DGVDIRTLG--LHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303
G +G T+R + + L
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHSL---------------------------LEKFQEG 113
Query: 304 EDVKPLIITPFCSNLQRFYVATSRQLKR----LESVSRSPIYSHFGETVTGNV--GQRQL 357
E V ++I+ ++ + L+ V S + G + G++Q
Sbjct: 114 ERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVG----MSAKAQQYIGYLSTGEKQR 169
Query: 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIR---SEFAHCTVLTIAHRLNTIIDS 414
+ +ARAL+ + ++LILDE A +D + + S + + ++ + H + I +
Sbjct: 170 VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITAN 229
Query: 415 -DRVLVLDKGLVVEFDSPS-VLMKNKASIFYSM 445
++L+L G ++ + +L S F+
Sbjct: 230 FSKILLLKDGQSIQQGAVEDILTSENMSRFFQK 262
Score = 36.4 bits (85), Expect = 0.018
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG--LHTLRSRLTIIPQD 548
+ G GAGK++L L GT+ + G +G T+R + +
Sbjct: 50 WILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHS 105
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 66.8 bits (164), Expect = 8e-13
Identities = 41/216 (18%), Positives = 76/216 (35%), Gaps = 44/216 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
+V G G GK++L + ++P G II +GV I ++ ++ +P+ +
Sbjct: 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEII-- 88
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+ I V + +K ++L V + + L
Sbjct: 89 -------------------VPRKISVE----DYLK------AVASLYGVKVNKNEIMDAL 119
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
ESV + GE G + + LA LL +I +LD+ AID ++ + +I
Sbjct: 120 ESVEVLDLKKKLGELSQG---TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176
Query: 393 RSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVV 426
+++ L+ D L K
Sbjct: 177 LEILKEKGIVIISSREELSYC---DVNENLHKYSTK 209
Score = 45.6 bits (109), Expect = 1e-05
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V G G GK++L + ++P G II +GV I ++ ++ +P++ ++
Sbjct: 38 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRK 92
Query: 555 -TLRLNLDPVGE-----SSDEAIWKALELAHL 580
++ L V + I ALE +
Sbjct: 93 ISVEDYLKAVASLYGVKVNKNEIMDALESVEV 124
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 62.2 bits (152), Expect = 6e-11
Identities = 26/76 (34%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
GQRQLI +ARA+ + K+++LDE T+A+DL D++ S + ++ + TV+ H+ N
Sbjct: 132 GQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191
Query: 411 IID-SDRVLVLDKGLV 425
++ +++ L+L+K
Sbjct: 192 VVAIANKTLLLNKQNF 207
Score = 35.6 bits (83), Expect = 0.034
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
+++ ++G+ G GKS+L L I P G I +
Sbjct: 32 DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV 64
Score = 33.7 bits (78), Expect = 0.12
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 13/55 (23%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549
+ ++G+ G GKS+L L I P G I + + +PQ
Sbjct: 34 LAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQ-------------SIGFVPQFF 75
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 62.4 bits (151), Expect = 3e-10
Identities = 119/681 (17%), Positives = 187/681 (27%), Gaps = 267/681 (39%)
Query: 2 LANGSIRAS----KGLHLV--VLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTF 55
L++GS+ + L+ F P F+ D E +
Sbjct: 11 LSHGSLEHVLLVPTASFFIASQLQE------QFNKILP--EPTEGFAADDEPT-TPAELV 61
Query: 56 LRSWINCLFSVLYLMPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPV 115
+ F G+V SL + +++L L F+
Sbjct: 62 GK--------------------FLGYVSSL-VEPSKVGQFDQVLNLCLT----EFENC-- 94
Query: 116 GRVLSRFSSDVNTLDNKLTLSVQQTLSQPFKITQT-------LNW---------LVRMTS 159
L +D++ L KL TL + ++ + L R
Sbjct: 95 --YLE--GNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVG 150
Query: 160 DVETNIVAV---------------------------------ERIKEYGETPQEAE---- 182
+ +VA+ E + E T +AE
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 183 -------WVN--DKKPKDE--------WPEKGEVEFKDYKVRYRE-GL---ELVGIV-GR 220
W+ P + P G ++ Y V + G EL + G
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGA 270
Query: 221 TGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI-CYST 279
TG + +T A+ I D + S + + + +F I
Sbjct: 271 TGHSQGLVT-AVA--IAETD----------------SWESFFVSVRKAITVLFFIGVRCY 311
Query: 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYV-----ATSRQLKRL 332
+ +P S+L + SL E V P +P SNL + V T+ L
Sbjct: 312 EAYPNTSLPPSIL----EDSLENNEGV-P---SPMLSISNLTQEQVQDYVNKTNSHLPAG 363
Query: 333 ESVSRSPI--YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
+ V S + + V+G + L L LRK K A + +D QS
Sbjct: 364 KQVEISLVNGAKNL--VVSGPP--QSLYGLNLT-LRKAK------APSGLD-------QS 405
Query: 391 TIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFD---SP--SVLMKNKASIFYSM 445
R F S+R L F SP S L+
Sbjct: 406 --RIPF-----------------SERKLK----FSNRFLPVASPFHSHLLVP-------- 434
Query: 446 AKDAGLAWLAVRLETVGNLITFSAALLA--VLSKETLNAGLVGLSVSYAMQVGIVGRTGA 503
A D L N ++F+A + V G R +
Sbjct: 435 ASDLINKDLV------KNNVSFNAKDIQIPVYDTFD----------------GSDLRVLS 472
Query: 504 GKSSLTLALFRII--EPAD--------GTIIID---GVDIRTLGLHTLRSRLT------I 544
G S++ + I P T I+D G GL L R +
Sbjct: 473 G--SISERIVDCIIRLPVKWETTTQFKATHILDFGPG---GASGLGVLTHRNKDGTGVRV 527
Query: 545 IPQDPVLFSGTLRLNL-DPVG 564
I +GTL +N D G
Sbjct: 528 IV------AGTLDINPDDDYG 542
Score = 49.3 bits (117), Expect = 4e-06
Identities = 52/291 (17%), Positives = 90/291 (30%), Gaps = 102/291 (35%)
Query: 26 MSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCL-FSVLYLM---PVTITVFFYGF 81
M + T+ + + D + + FS+L ++ PV +T+ F G
Sbjct: 1633 MDLYKTSKAAQDV------WNRAD-------NHFKDTYGFSILDIVINNPVNLTIHFGG- 1678
Query: 82 VISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSR--FSSDVNTLDNKLTLSVQQ 139
KR+ E +S + F+T G++ + F ++N T ++
Sbjct: 1679 -------EKGKRIRE-------NYSAMIFETIVDGKLKTEKIF-KEINEHSTSYTFRSEK 1723
Query: 140 -TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA--------EW---VNDK 187
LS + TQ +T A E +K G P +A E+
Sbjct: 1724 GLLSAT-QFTQ-----PALTL---MEKAAFEDLKSKGLIPADATFAGHSLGEYAALA--- 1771
Query: 188 KPKDEWPEKGEV-EFKD--YKVRYR------------EGLELVGIV----GRTGAGKSSL 228
+V + V YR G G++ GR A S
Sbjct: 1772 -------SLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE 1824
Query: 229 TLALF---------RIIEPA-----DGTIIIDGVDIRTLGLHTLRSRLTII 265
L ++E + + G D+R L T+ + L I
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVENQQYVAAG-DLR--ALDTVTNVLNFI 1872
Score = 44.3 bits (104), Expect = 1e-04
Identities = 77/420 (18%), Positives = 125/420 (29%), Gaps = 166/420 (39%)
Query: 256 HTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLY-FFI----QVSLIFTEDVKPLI 310
++ R LT+ L + ++ T F S L F + + F D +P
Sbjct: 4 YSTRP-LTLSHGSLEHVLLV--PTASFFIA----SQLQEQFNKILPEPTEGFAADDEPTT 56
Query: 311 ITPFCSNLQRF--YVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKT 368
+F YV++ + VGQ +L
Sbjct: 57 PAELVG---KFLGYVSSLVE--------------------PSKVGQF------DQVLN-- 85
Query: 369 KILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEF 428
L L E LE +D+ H +A +L ++D LV K L+ +
Sbjct: 86 --LCLTEFENCY-LEGNDI----------H----ALAAKLLQ--ENDTTLVKTKELIKNY 126
Query: 429 -------------DSPSVLMK----NKASIF-----------YSMAKDAGLAWLAVRLET 460
S S L + A + Y L +T
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY-------FEELRDLYQT 179
Query: 461 ----VGNLITFSAALLAVLSKETLNAGLV---GLSV-----------------SYAMQVG 496
VG+LI FSA L+ L + TL+A V GL++ S +
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCP 239
Query: 497 IVGRTGAGKSSLT-LALFRIIEPADGTIIIDGVDIRTLGLHT--LRSRL---TIIPQD-- 548
++G + LA + + + LG LRS L T Q
Sbjct: 240 LIG--------VIQLAHYVVT-------------AKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 549 -PVLFSGTLRLNLDPVGESSDEAIWKALEL-------AHLNTFVSNLPARLQHEVSEGGE 600
V + T ES ++ KA+ + + ++LP + + E E
Sbjct: 279 TAVAIAET------DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNE 332
Score = 36.6 bits (84), Expect = 0.028
Identities = 35/220 (15%), Positives = 68/220 (30%), Gaps = 71/220 (32%)
Query: 410 TIIDSDRVLVLD--KGLVVEFDSPS--VLMKNKASIFYSMAKDAGLAWLAVRLETVGNL- 464
+I+D +V++ L + F + +N +++ + D L + E +
Sbjct: 1660 SILD----IVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 465 -ITF--------------------SAALLAVLSKETL---NAGLVGLSVS-YAMQVGIVG 499
TF A L + L +A G S+ YA +
Sbjct: 1716 SYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASL-- 1773
Query: 500 RTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL--TIIPQDPVLFSGTLR 557
A +++ V++ + R +P+D + S
Sbjct: 1774 ---AD--VMSIE--------------SLVEV----VF-YRGMTMQVAVPRDELGRSNYGM 1809
Query: 558 LNLDP--VGES-SDEAIWKALELAHLNT--FVS----NLP 588
+ ++P V S S EA+ +E T V N+
Sbjct: 1810 IAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE 1849
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 60.0 bits (146), Expect = 4e-10
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 158 TSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGL----- 212
T++V V + +GE ++A+ + + + F ++ + L
Sbjct: 2 TTEVVMENVTAFWEEGFGELFEKAKQ--NNNNRKTSNGDDSLSFSNFSLLGTPVLKDINF 59
Query: 213 -----ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
+L+ + G TGAGK+SL + + +EP++G I G
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
Score = 54.3 bits (131), Expect = 3e-08
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
+ + + G TGAGK+SL + + +EP++G I G R++
Sbjct: 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCS 105
Query: 547 QDPVLFSGTLRLNLDPVGESSDEAI-WKALELAHLNTFVSNLPARLQHEVSEGGENL 602
Q+ + GT++ N+ +G S DE ++ L +S + + EGG L
Sbjct: 106 QNSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 160
Score = 51.2 bits (123), Expect = 3e-07
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET-DDLIQSTIRSEFAHCTVLTIAHRLNTI 411
GQR I LARA+ + + +LD +D+ T ++ +S + A+ T + + ++ +
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 222
Query: 412 IDSDRVLVLDKGLVVEFDSPSVLMKNK 438
+D++L+L +G + + S L +
Sbjct: 223 KKADKILILHEGSSYFYGTFSELQNLR 249
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 55.4 bits (134), Expect = 1e-08
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ L+ + AL + +I+ LDE +D +I I+ + + H L+ +
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGILVTHELDMLN 189
Query: 413 D-SDRVLVLDKGLVVE-FDSPSVLMKNKAS 440
+ G ++ S S L+++
Sbjct: 190 LYKEYKAYFLVGNRLQGPISVSELLESSIV 219
Score = 41.6 bits (98), Expect = 4e-04
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRII---EPADGTIIIDGVDIRTL 253
E V I+G G+GK++L R I P G I I+G+++R +
Sbjct: 31 EKVIILGPNGSGKTTL----LRAISGLLPYSGNIFINGMEVRKI 70
Score = 38.5 bits (90), Expect = 0.004
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 7/42 (16%)
Query: 495 VGIVGRTGAGKSSLTLALFRII---EPADGTIIIDGVDIRTL 533
V I+G G+GK++L R I P G I I+G+++R +
Sbjct: 33 VIILGPNGSGKTTL----LRAISGLLPYSGNIFINGMEVRKI 70
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 56.4 bits (135), Expect = 2e-08
Identities = 77/435 (17%), Positives = 137/435 (31%), Gaps = 130/435 (29%)
Query: 111 DTTPVGRVLSRFSSDVNTLD----NKLTLS---VQQTLSQPFKITQT--LNWLVRMTSDV 161
D V F + + D K LS + + ++ T L W +
Sbjct: 20 DILSV--FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL---SK 74
Query: 162 ETNIVA--VERI--KEYG--ETPQEAEWVNDKKPKDEWPEKGEV------EFKDYKV--- 206
+ +V VE + Y +P + E + E+ + F Y V
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 207 ----RYREGL-EL-----VGIVGRTGAGKSSLTLAL---FRIIEPADGTII-IDGVDIRT 252
+ R+ L EL V I G G+GK+ + L + +++ D I +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL------N 188
Query: 253 LG-LHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII 311
L ++ + L ++ Q L +++ + + ++
Sbjct: 189 LKNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLR------------IHSIQ---- 231
Query: 312 TPFCSNLQRFYVATSRQLKR----LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRK 367
+ L+R S+ + L +V + ++ F N+ C
Sbjct: 232 ----AELRRLL--KSKPYENCLLVLLNVQNAKAWNAF------NLS-----C-------- 266
Query: 368 TKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
KIL+ T + TD L +T T +++ H T+ + +L K L
Sbjct: 267 -KILLT---TRFKQV-TDFLSAATT-------THISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 428 FD---------SPSVLMKNKASIFYSMAKDAGLA----WLAVRLETVGNLITFSAALLAV 474
+P L SI +D GLA W V + + +I S L V
Sbjct: 315 PQDLPREVLTTNPRRL-----SIIAESIRD-GLATWDNWKHVNCDKLTTIIESS---LNV 365
Query: 475 LSKETLNAGLVGLSV 489
L LSV
Sbjct: 366 LEPAEYRKMFDRLSV 380
Score = 49.1 bits (116), Expect = 4e-06
Identities = 79/490 (16%), Positives = 138/490 (28%), Gaps = 125/490 (25%)
Query: 13 LHLVVLRNI-LHSCMSF--FDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYL 69
+ L V + + M F F + ETV L L I+ ++
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLN-LKN-----CNSPETVLEMLQKLLYQ-IDPNWTSRSD 218
Query: 70 MPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLR--WSPLFFDTTPVG-RVL--SRFSS 124
I + + L L +K LL +L + ++ + ++L +RF
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 125 DVNTLDNKLTLSV-QQTLSQPFKITQTL----NWLVRMTSD-----VETNIVAV----ER 170
+ L T + S + +L D + TN + E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 171 IKEYGETPQEAEWVNDKKPKDEWPEKG--EVEFKDYKVRYREGLELVGIVGRTGAGKSSL 228
I++ T + VN K E +E +Y+ +
Sbjct: 337 IRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPAEYRKMFDR------------------ 377
Query: 229 TLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP-QVLATIFVICYSTPVFIFVIV 287
L++F I P +L+ I+
Sbjct: 378 -LSVFP-----------PSAHI---------------PTILLSLIW--FDVIK-----SD 403
Query: 288 PVSVLYFFIQVSLIFTEDVKPLIIT---------PFCSN---LQRFYVATSRQLKRLESV 335
+ V+ + SL+ + K I+ N L R V K +S
Sbjct: 404 VMVVVNKLHKYSLVE-KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 336 SRSP------IYSHFGETVTGNVGQRQLICLARAL---LR--KTKILILDEATAAIDLET 384
P YSH G + N+ + + L R + R + KI A A
Sbjct: 463 DLIPPYLDQYFYSHIGHHLK-NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 385 DDLIQSTIRSEF--AHCTVLTIAHRLNTIID----SDRVLVLDKGL-VVEFDSPSVLMKN 437
+ L Q + + +N I+D + L+ K ++ LM
Sbjct: 522 NTLQQLKFYKPYICDNDPKYE--RLVNAILDFLPKIEENLICSKYTDLLRI----ALMAE 575
Query: 438 KASIFYSMAK 447
+IF K
Sbjct: 576 DEAIFEEAHK 585
Score = 48.7 bits (115), Expect = 5e-06
Identities = 48/290 (16%), Positives = 84/290 (28%), Gaps = 98/290 (33%)
Query: 351 NVGQRQLICLARALLRKTKILILDEATAAIDL---ETDDLIQSTIRS-EFAHCTVLTIAH 406
G+ Q IL + E + + D+ +S + E H ++
Sbjct: 10 ETGEHQYQY--------KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH--IIMSKD 59
Query: 407 RLNTIIDSDRVL--VLDKG--LVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETV- 461
++ + R+ +L K +V +F VL N Y +L ++T
Sbjct: 60 AVSG---TLRLFWTLLSKQEEMVQKF-VEEVLRIN-----YK--------FLMSPIKTEQ 102
Query: 462 ----GNLITFSAAL------LAVLSK---------ETLNAGLVGLSVSYAMQVGIVGRTG 502
+ V +K L L+ L A V I G G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDGVLG 160
Query: 503 AGKSSLTLA-----------------------------------LFRIIEPADGTIIIDG 527
+GK+ + L L I+P + T D
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSDH 219
Query: 528 VDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALEL 577
L +H++++ L + + + L L L V + W A L
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKP-YENCL-LVLLNV---QNAKAWNAFNL 264
Score = 45.2 bits (106), Expect = 5e-05
Identities = 59/466 (12%), Positives = 139/466 (29%), Gaps = 107/466 (22%)
Query: 30 DTTPVGRMISRFSQDVETVDSNLPTFLRSWI-NCLFSVLYLMPVTITVFFYGFVISLGTL 88
D V F + + D + +S + + + ++ F L
Sbjct: 20 DILSV--FEDAFVDNFDCKD--VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT---LL 72
Query: 89 FAAKRLHEKLLKSMLR------WSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLSVQQTLS 142
+ + +K ++ +LR SP+ + + + + L N + + +S
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 143 QPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFK 202
+ + L+ + N++ ++ + G+T + K + + FK
Sbjct: 133 RLQPYLKLRQALLELRP--AKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMD------FK 183
Query: 203 DYKVRYREGLELVGIVGRTGAGKSSLTL--ALFRIIEPADGTIIIDGVDIRTLGLHTLRS 260
+ + + + ++ L + L I+P + T D L +H++++
Sbjct: 184 IFWLN----------LKNCNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQA 232
Query: 261 RLT------------II------PQVLAT------IFVICYSTPVFIFVIVPVSVLYFFI 296
L ++ + I + V F+ +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 297 QVSLIFTED-VKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355
S+ T D VK L++ Y+ Q E ++ +P
Sbjct: 293 HHSMTLTPDEVKSLLLK---------YLDCRPQDLPREVLTTNP---------------- 327
Query: 356 QLICLARALLRKTKILI-------LDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRL 408
+ + + +R D+ T I+ + L + R F +V
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF----PP 383
Query: 409 NTIIDSDRVLVL---------DKGLVVEFDSPSVLMKNKASIFYSM 445
+ I + +L L +V + S++ K S+
Sbjct: 384 SAHIPTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 54.5 bits (132), Expect = 2e-08
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
G+++ + +A ++ + ILILDE +D E + + TV+ I+H + T
Sbjct: 142 GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGK-TVILISHDIET 200
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKN 437
+I+ DRV+VL+KG V + ++
Sbjct: 201 VINHVDRVVVLEKGKKVFDGTRMEFLEK 228
Score = 48.7 bits (117), Expect = 2e-06
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549
+ + G TG+GKS+L + +IEP G ++ DG + + +R + I Q P
Sbjct: 36 LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK---GYEIRRNIGIAFQYP 87
Score = 46.4 bits (111), Expect = 1e-05
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
E + + G TG+GKS+L + +IEP G ++ DG + + +R
Sbjct: 34 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK---GYEIRRN 79
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 54.5 bits (132), Expect = 2e-08
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ++ + +A L+ + K+LILDE TA +D I + + T++ H ++
Sbjct: 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
+ D V V+ +G V+ +P + K I + L
Sbjct: 207 VPLYCDNVFVMKEGRVILQGNPKEVFAEKEVI-----RKVNL 243
Score = 52.9 bits (128), Expect = 8e-08
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSRLTIIPQDPV-- 550
I+G G GKS+L I++P+ G I+ D I G+ LR + I+ QDP
Sbjct: 37 TAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ 96
Query: 551 LFSGTLR-------LNLDPVGESSDEA---IWKALELAHLNTFVSNLPARL 591
LFS ++ +N+ DE + AL+ + L
Sbjct: 97 LFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCL 144
Score = 47.5 bits (114), Expect = 5e-06
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSR 261
E+ I+G G GKS+L I++P+ G I+ D I G+ LR
Sbjct: 35 EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 54.6 bits (132), Expect = 4e-08
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD----DLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q + +ARAL K+L+ D+AT+A+D T +L++ I T+L I H +
Sbjct: 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD-INRRL-GLTILLITHEM 224
Query: 409 NTIID-SDRVLVLDKGLVVE 427
+ + D V V+ G ++E
Sbjct: 225 DVVKRICDCVAVISNGELIE 244
Score = 47.7 bits (114), Expect = 7e-06
Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQ 267
++ G++G +GAGKS+L + + P +G++++DG ++ TL L R ++ +I Q
Sbjct: 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 112
Score = 46.5 bits (111), Expect = 1e-05
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQ 547
G++G +GAGKS+L + + P +G++++DG ++ TL L R ++ +I Q
Sbjct: 58 GVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 112
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 52.2 bits (126), Expect = 1e-07
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 353 GQRQLICLARALLRKT-------KILILDEATAAIDL----ETDDLIQSTIRSEFAHCTV 401
G+ Q + LA +L+ T ++L+LDE ++D+ D ++ + + +
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ---QGLAI 186
Query: 402 LTIAHRLN-TIIDSDRVLVLDKGLVVEFDSPS-VL 434
+ +H LN T+ + R +L G ++ VL
Sbjct: 187 VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
Score = 51.8 bits (125), Expect = 2e-07
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 13/111 (11%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ +VG GAGKS+L + + G+I G + L + Q
Sbjct: 29 LHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFA 87
Query: 555 -----TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
L L+ ++ E + L + R +++S GGE
Sbjct: 88 TPVWHYLTLHQHD--KTRTELLNDVAGALAL----DDKLGRSTNQLS-GGE 131
Score = 47.9 bits (115), Expect = 3e-06
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E++ +VG GAGKS+L + + G+I G + L + Q
Sbjct: 27 EILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 51.4 bits (124), Expect = 2e-07
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
+ + + G TGAGK+SL + + +EP++G I G R++
Sbjct: 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCS 75
Query: 547 QDPVLFSGTLRLN-LDPVGESSDEAI-WKALELAHLNTFVSNLPARLQHEVSEGGENL 602
Q + GT++ N + G S DE ++ L +S + + EGG L
Sbjct: 76 QFSWIMPGTIKENII--FGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 131
Score = 49.9 bits (120), Expect = 6e-07
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET-DDLIQSTIRSEFAHCTVLTIAHRLNTI 411
GQR I LARA+ + + +LD +D+ T ++ +S + A+ T + + ++ +
Sbjct: 134 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 193
Query: 412 IDSDRVLVLDKGLVVEFDSPSVLMKNK 438
+D++L+L +G + + S L +
Sbjct: 194 KKADKILILHEGSSYFYGTFSELQNLQ 220
Score = 49.5 bits (119), Expect = 8e-07
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
Query: 196 KGEVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADG 241
EV ++ + EG +L+ + G TGAGK+SL + + +EP++G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 242 TIIIDG 247
I G
Sbjct: 64 KIKHSG 69
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 51.4 bits (124), Expect = 2e-07
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNT 410
G + + +ARAL+ ++ ILDE T+ +D+ ++ ++ + + T+L +H
Sbjct: 150 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK-QASQEGLTILVSSH---- 204
Query: 411 IID-----SDRVLVLDKGLVVEFDSPSVLMK 436
+ DR+ ++ G +VE + L +
Sbjct: 205 NMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
Score = 37.5 bits (88), Expect = 0.007
Identities = 20/94 (21%), Positives = 43/94 (45%), Gaps = 9/94 (9%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
G++G GAGK++ + +I+P+ G + + G ++ H +R ++ +P++ +
Sbjct: 44 FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRN 102
Query: 555 -TLRLNLDPVG-------ESSDEAIWKALELAHL 580
L V +E + +A E+A L
Sbjct: 103 MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGL 136
Score = 36.0 bits (84), Expect = 0.021
Identities = 16/59 (27%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
EG E+ G++G GAGK++ + +I+P+ G + + G ++ H +R ++ +P+
Sbjct: 39 EEG-EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPE 95
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 50.2 bits (121), Expect = 4e-07
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
S+ V +VG+ G GKSSL AL ++ +G + I G + +P
Sbjct: 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVP 72
Query: 547 QDPVLFSGTLRLN-LDPVGESSDEAI-WKALELAHLNTFVSNLPARLQHEVSEGGENL 602
Q + + +LR N L G +E ++ L + LP+ + E+ E G NL
Sbjct: 73 QQAWIQNDSLRENIL--FGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNL 128
Score = 49.5 bits (119), Expect = 9e-07
Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET-----DDLIQSTIRSEFAHCTVLTIAHR 407
GQ+Q + LARA+ I + D+ +A+D +++I + + T + + H
Sbjct: 131 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGP--KGMLKNKTRILVTHS 188
Query: 408 LNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAG 450
++ + D ++V+ G + E S L+ + F +
Sbjct: 189 MSYLPQVDVIIVMSGGKISEMGSYQELLARDGA-FAEFLRTYA 230
Score = 45.2 bits (108), Expect = 2e-05
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 193 WPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
W EG LV +VG+ G GKSSL AL ++ +G + I G
Sbjct: 13 WARSDPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG 66
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 46.7 bits (110), Expect = 5e-06
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 169 ERIKEYGETPQEAEW----VNDKKPKDEWPEKGEVEFKDYKVRYREGLE 213
E I+++ E Q K + EW EK + + +++ R E +E
Sbjct: 85 ESIRKWREE-QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 48.1 bits (114), Expect = 8e-06
Identities = 33/185 (17%), Positives = 71/185 (38%), Gaps = 16/185 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR---LN 409
G + + LARA+LR IL+LDE T +D + + + + T +TI+H L+
Sbjct: 552 GWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLD 609
Query: 410 TIIDSDRVLVLDKGLVVEFD---SPSVLMKNKASIFYSMAKDA-----GLAWLAVRLETV 461
+ + ++ + + ++ + V A + ++ ++T
Sbjct: 610 NVC--EYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTK 667
Query: 462 GN-LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPAD 520
++ + + S + ++ ++G GAGKS+L L + P
Sbjct: 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Query: 521 GTIII 525
G +
Sbjct: 728 GEVYT 732
Score = 43.5 bits (102), Expect = 2e-04
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR---LN 409
GQ+ + LA ++ +++LDE T +D ++ + ++ EF V+ I H
Sbjct: 905 GQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK-EFE-GGVIIITHSAEFTK 962
Query: 410 TIIDSDRVLVLDKGLVVEFD 429
+ ++ V + G +
Sbjct: 963 NL--TEEVWAVKDGRMTPSG 980
Score = 35.4 bits (81), Expect = 0.055
Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 6/46 (13%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRII--EPADGTIIIDGVDI 530
L + A + GI G G GKS+ L R I DG +
Sbjct: 456 LRLKRARRYGICGPNGCGKST----LMRAIANGQVDGFPTQEECRT 497
Score = 35.4 bits (81), Expect = 0.063
Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 7/68 (10%)
Query: 185 NDKKPKDEWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII--EPADGT 242
+ + ++ ++R + GI G G GKS+ L R I DG
Sbjct: 435 DLCNCEFSLAYGAKILLNKTQLRLKRA-RRYGICGPNGCGKST----LMRAIANGQVDGF 489
Query: 243 IIIDGVDI 250
+
Sbjct: 490 PTQEECRT 497
Score = 34.6 bits (79), Expect = 0.10
Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Query: 187 KKPKDEWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
+ ++P + + D + + ++G GAGKS+L L + P G +
Sbjct: 675 TNMEFQYPGTSKPQITDINFQCSLS-SRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 45.6 bits (109), Expect = 1e-05
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 21/91 (23%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN-TI 411
G+RQ + LARAL+ + ++L+LDE +A+DL+T ++ +R + + I
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF---------VQREFDVPI 180
Query: 412 I----D-------SDRVLVLDKGLVVEFDSP 431
+ D +D V V+ G +VE
Sbjct: 181 LHVTHDLIEAAMLADEVAVMLNGRIVEKGKL 211
Score = 31.4 bits (72), Expect = 0.70
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 8/49 (16%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTL 253
G + ++G TGAGKS +I +P G + ++G DI L
Sbjct: 21 EMGRDYCVLLGPTGAGKSVF----LELIAGIVKPDRGEVRLNGADITPL 65
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 45.2 bits (108), Expect = 3e-05
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAI-DLETDDLIQ--STIRSEFAHCTVLTIAHRLN 409
GQ +L+ + RAL+ K++++DE A + D+ ++++ T L I HRL+
Sbjct: 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLD 214
Query: 410 TIID-SDRVLVLDKG 423
+++ D + V+ G
Sbjct: 215 IVLNYIDHLYVMFNG 229
Score = 32.5 bits (75), Expect = 0.27
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDI 250
+G ++ I+G G+GKS+ L +I + +G + + DI
Sbjct: 31 NKG-DVTLIIGPNGSGKST----LINVITGFLKADEGRVYFENKDI 71
Score = 29.8 bits (68), Expect = 2.3
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 8/40 (20%)
Query: 495 VGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDI 530
I+G G+GKS+ L +I + +G + + DI
Sbjct: 36 TLIIGPNGSGKST----LINVITGFLKADEGRVYFENKDI 71
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 44.8 bits (107), Expect = 3e-05
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 258
G ++V ++G GAGK++ A+ ++ G II +G DI H +
Sbjct: 30 PRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Score = 41.7 bits (99), Expect = 3e-04
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 538
V ++G GAGK++ A+ ++ G II +G DI H +
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
Score = 30.9 bits (71), Expect = 0.84
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 353 GQRQLICLARALLRKTKILILDE 375
G++Q++ + RAL+ + K+L++DE
Sbjct: 143 GEQQMLAIGRALMSRPKLLMMDE 165
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 43.0 bits (102), Expect = 2e-04
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 21/102 (20%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN-TI 411
Q+Q + LARAL++ +L+LDE + +D ++ + R+ + RL T+
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDAR----MRDSARALVKE-----VQSRLGVTL 194
Query: 412 I----D-------SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ D +DRV VL KG +V+ P L N SI
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
Score = 30.3 bits (69), Expect = 1.9
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDI 250
E GI+G +GAGK++ + RII P+ G + D +
Sbjct: 32 ERFGILGPSGAGKTT-FM---RIIAGLDVPSTGELYFDDRLV 69
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 42.9 bits (102), Expect = 2e-04
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 21/102 (20%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN-TI 411
G++Q + LARAL+ KIL+LDE +A+D T + + + + + T+
Sbjct: 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV---------LHKKNKLTV 181
Query: 412 I----D-------SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ D +DR+ V+ G +++ P + +
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223
Score = 30.2 bits (69), Expect = 1.7
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 9/46 (19%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDI 250
G E I+G TGAGK+ L +I P G I++DG D+
Sbjct: 24 ESG-EYFVILGPTGAGKTL-FL---ELIAGFHVPDSGRILLDGKDV 64
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 40.7 bits (96), Expect = 0.001
Identities = 29/102 (28%), Positives = 51/102 (50%), Gaps = 21/102 (20%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN-TI 411
GQ+Q + LARAL + ++L+ DE AAID + +++ +R + + T
Sbjct: 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ---------VHDEMGVTS 199
Query: 412 I----D-------SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ D +DRVLVL +G V +F +P + + ++F
Sbjct: 200 VFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241
Score = 29.5 bits (67), Expect = 2.9
Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 9/46 (19%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDI 250
REG E+VG++G +G+GK+++ R+I P G + I G +
Sbjct: 39 REG-EMVGLLGPSGSGKTTI----LRLIAGLERPTKGDVWIGGKRV 79
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 40.2 bits (95), Expect = 0.001
Identities = 21/91 (23%), Positives = 41/91 (45%), Gaps = 21/91 (23%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN-TI 411
GQ+Q LARAL ++++LDE +A+D + I+ + + +
Sbjct: 142 GQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA---------ALRANGKSA 192
Query: 412 I----D-------SDRVLVLDKGLVVEFDSP 431
+ D +DR+ V+ +G +++ SP
Sbjct: 193 VFVSHDREEALQYADRIAVMKQGRILQTASP 223
Score = 29.8 bits (68), Expect = 2.5
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLGLH 256
E++ I+G +G GK++L R + +P G I + G I + +
Sbjct: 31 EILFIIGASGCGKTTL----LRCLAGFEQPDSGEISLSGKTIFSKNTN 74
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 37.9 bits (89), Expect = 0.006
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 10/91 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ---STIRSEFA--HCTVLTIAHR 407
GQ+Q + +ARAL + +L+ DE T+A+D E L+ ++ + A T++ + H
Sbjct: 157 GQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEVLRIMQ-QLAEEGKTMVVVTHE 212
Query: 408 LNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
+ S V+ L +G + E P + N
Sbjct: 213 MGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243
Score = 30.2 bits (69), Expect = 1.5
Identities = 12/39 (30%), Positives = 27/39 (69%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
+++ I+G +G+GKS+ + + +P++G II++G +I
Sbjct: 33 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNIN 71
Score = 28.7 bits (65), Expect = 4.7
Identities = 12/37 (32%), Positives = 25/37 (67%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531
+ I+G +G+GKS+ + + +P++G II++G +I
Sbjct: 35 ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNIN 71
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATPase, exonuclease, endonucle binding,
DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB:
3qkr_A*
Length = 203
Score = 35.8 bits (83), Expect = 0.024
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSL----TLALF 233
D V ++EG+ I+G+ G+GKSSL + L+
Sbjct: 14 HSDTVVEFKEGI--NLIIGQNGSGKSSLLDAILVGLY 48
Score = 33.4 bits (77), Expect = 0.14
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 496 GIVGRTGAGKSSL----TLALF 513
I+G+ G+GKSSL + L+
Sbjct: 27 LIIGQNGSGKSSLLDAILVGLY 48
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 36.0 bits (84), Expect = 0.032
Identities = 24/104 (23%), Positives = 48/104 (46%), Gaps = 25/104 (24%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID--LETDDLIQSTIRSEFAHCTVLTIAHRLN- 409
GQ+Q + +ARAL+++ ++L+LDE + +D L +R+E + L
Sbjct: 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRL------EVRAELKR-----LQKELGI 185
Query: 410 TII----D-------SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
T + D +DR+ V+ +G +++ +P + F
Sbjct: 186 TTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKF 229
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 34.9 bits (81), Expect = 0.054
Identities = 16/52 (30%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--RTLGLHTLRSRL 262
E+V ++G +G+GKS+ L + + +G IIIDG+++ + L+ +R +
Sbjct: 51 EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102
Score = 33.7 bits (78), Expect = 0.11
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 10/91 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ---STIRSEFAHC--TVLTIAHR 407
GQ Q + +ARAL + KI++ DE T+A+D E ++ S ++ + A+ T++ + H
Sbjct: 163 GQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLSVMK-QLANEGMTMVVVTHE 218
Query: 408 LNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
+ + DRVL +D G ++E P L
Sbjct: 219 MGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
Score = 33.3 bits (77), Expect = 0.17
Identities = 27/101 (26%), Positives = 52/101 (51%), Gaps = 8/101 (7%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--RTLGLHTLRSRL 542
+ + + V ++G +G+GKS+ L + + +G IIIDG+++ + L+ +R +
Sbjct: 43 INVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102
Query: 543 TIIPQDPVLFSG-TLRLN--LDPV---GESSDEAIWKALEL 577
++ Q LF T+ N L P+ ++A KA+EL
Sbjct: 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMEL 143
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 34.8 bits (81), Expect = 0.056
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 11/56 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLG---LHTLRSR 261
E V I+G +G+GKS+ L I+ P +G + ++G ++ L LR+R
Sbjct: 31 EFVSIIGASGSGKST----LLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82
Score = 34.4 bits (80), Expect = 0.063
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 3/77 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
G++Q + +ARAL + +L DE T +D + E +++ + H
Sbjct: 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGT-SIVMVTHEREL 202
Query: 411 IIDSDRVLVLDKGLVVE 427
+ R L + G VV
Sbjct: 203 AELTHRTLEMKDGKVVG 219
Score = 32.1 bits (74), Expect = 0.39
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 11/54 (20%)
Query: 495 VGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLG---LHTLRSR 541
V I+G +G+GKS+ L I+ P +G + ++G ++ L LR+R
Sbjct: 33 VSIIGASGSGKST----LLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 35.2 bits (81), Expect = 0.056
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 6/37 (16%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSL----TLALF 233
+ ++++ +G+ V I+G G+GKSS+ ALF
Sbjct: 16 HVNSRIKFEKGI--VAIIGENGSGKSSIFEAVFFALF 50
Score = 33.7 bits (77), Expect = 0.19
Identities = 10/22 (45%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 496 GIVGRTGAGKSSL----TLALF 513
I+G G+GKSS+ ALF
Sbjct: 29 AIIGENGSGKSSIFEAVFFALF 50
Score = 30.2 bits (68), Expect = 2.3
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 7/77 (9%)
Query: 353 GQRQLICLARAL-------LRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405
G++ + L+ L + + +ILDE T +D + R + ++ I
Sbjct: 284 GEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIIT 343
Query: 406 HRLNTIIDSDRVLVLDK 422
H +D ++ + K
Sbjct: 344 HHRELEDVADVIINVKK 360
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 34.4 bits (80), Expect = 0.059
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR---SEFAHCTVLTIAHRLN 409
GQ+Q + +ARAL I++ D+ T A+D +T + I ++ E TV+ + H +N
Sbjct: 149 GQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGK-TVVVVTHDIN 207
Query: 410 TIIDSDRVLVLDKGLVVE 427
+R++ L G V
Sbjct: 208 VARFGERIIYLKDGEVER 225
Score = 32.5 bits (75), Expect = 0.27
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 11/56 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLG---LHTLRSR 261
E V I+G +G+GKS+ + II +P +G + ID + L L +R
Sbjct: 32 EFVSIMGPSGSGKST----MLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRD 83
Score = 30.2 bits (69), Expect = 1.8
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 11/54 (20%)
Query: 495 VGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLG---LHTLRSR 541
V I+G +G+GKS+ + II +P +G + ID + L L +R
Sbjct: 34 VSIMGPSGSGKST----MLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRD 83
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A*
1us8_A*
Length = 149
Score = 33.9 bits (78), Expect = 0.062
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 6/37 (16%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSL----TLALF 233
D V ++EG+ I+G+ G+GKSSL + L+
Sbjct: 14 HSDTVVEFKEGI--NLIIGQNGSGKSSLLDAILVGLY 48
Score = 31.2 bits (71), Expect = 0.46
Identities = 9/22 (40%), Positives = 14/22 (63%), Gaps = 4/22 (18%)
Query: 496 GIVGRTGAGKSSL----TLALF 513
I+G+ G+GKSSL + L+
Sbjct: 27 LIIGQNGSGKSSLLDAILVGLY 48
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 34.8 bits (80), Expect = 0.073
Identities = 11/24 (45%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Query: 214 LVGIVGRTGAGKSSL----TLALF 233
+ + G GAGKSSL + ALF
Sbjct: 25 ITVVEGPNGAGKSSLFEAISFALF 48
Score = 34.1 bits (78), Expect = 0.13
Identities = 11/22 (50%), Positives = 13/22 (59%), Gaps = 4/22 (18%)
Query: 496 GIVGRTGAGKSSL----TLALF 513
+ G GAGKSSL + ALF
Sbjct: 27 VVEGPNGAGKSSLFEAISFALF 48
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 34.5 bits (80), Expect = 0.092
Identities = 26/104 (25%), Positives = 50/104 (48%), Gaps = 25/104 (24%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID--LETDDLIQSTIRSEFAHCTVLTIAHRLN- 409
GQRQ + +ARA++ + +L++DE + +D L +R+E + +L
Sbjct: 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA------MRAEIKK-----LQQKLKV 193
Query: 410 TII----D-------SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
T I D DR+ V+++G +++ SP+ + S+F
Sbjct: 194 TTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor,
chromophore, glycoprotein, lipoprotein, membrane,
palmitate phosphorylation; HET: BOG RET PLM TWT PC1;
2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*
Length = 448
Score = 34.5 bits (79), Expect = 0.093
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 6/48 (12%)
Query: 57 RSWINCLFSVLYLMPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLR 104
RS I C+F + + P+ I F Y + + HEK + +M +
Sbjct: 198 RSNILCMFILGFFGPILIIFFCYFN------IVMSVSNHEKEMAAMAK 239
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 34.3 bits (78), Expect = 0.10
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 17/72 (23%)
Query: 162 ETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGLELVGIVGRT 221
+ + +E G ++D + + + V + G T
Sbjct: 36 QEILNLIELRMRAGNIQLTNSAISDALKE---IDSSVLN--------------VAVTGET 78
Query: 222 GAGKSSLTLALF 233
G+GKSS L
Sbjct: 79 GSGKSSFINTLR 90
Score = 33.9 bits (77), Expect = 0.13
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 493 MQVGIVGRTGAGKSSLTLALF 513
+ V + G TG+GKSS L
Sbjct: 70 LNVAVTGETGSGKSSFINTLR 90
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding,
hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1
c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Length = 482
Score = 34.1 bits (79), Expect = 0.14
Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 22/68 (32%)
Query: 208 YREGLELVGIVGRTGAGKSSLTLALFR---------------IIEPADGTIIIDGVDIR- 251
GL +V IVG+ GKS+L L +I I+I G+ R
Sbjct: 240 LNRGLRMV-IVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVIS---EEIVIRGILFRI 295
Query: 252 --TLGLHT 257
T G+ +
Sbjct: 296 VDTAGVRS 303
Score = 30.6 bits (70), Expect = 1.6
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 21/63 (33%)
Query: 493 MQVGIVGRTGAGKSSLTLALFR---------------IIEPADGTIIIDGVDIR---TLG 534
+++ IVG+ GKS+L L +I I+I G+ R T G
Sbjct: 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVIS---EEIVIRGILFRIVDTAG 300
Query: 535 LHT 537
+ +
Sbjct: 301 VRS 303
>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 9.00A {Bos
taurus}
Length = 205
Score = 33.4 bits (75), Expect = 0.15
Identities = 16/92 (17%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 122 FSSDVNTLDNKLTLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA 181
S D+ N + + + R+T + E+ E ++ + A
Sbjct: 63 ASEDMGATVNGDVFQEANGPADGYAAIAQAD---RLTQEPESIRKWREEQRKRLQELDAA 119
Query: 182 EWVNDKKPKDEWPEKGEVEFKDYKVRYREGLE 213
K + EW EK + + +++ R E +E
Sbjct: 120 S----KVMEQEWREKAKKDLEEWNQRQSEQVE 147
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 33.7 bits (78), Expect = 0.16
Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 25/104 (24%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID--LETDDLIQSTIRSEFAHCTVLTIAHRLN- 409
GQ+Q + LARAL+++ K+L+ DE + +D L +R+E H + L
Sbjct: 137 GQQQRVALARALVKQPKVLLFDEPLSNLDANLRM------IMRAEIKH-----LQQELGI 185
Query: 410 TII----D-------SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
T + D + R+ V ++G +V++ +P + + ++F
Sbjct: 186 TSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMF 229
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP-
binding, hydrolase, magnesium, metal-binding,
nucleotide- binding, potassium; HET: GDP FON; 2.95A
{Chlorobium tepidum} PDB: 3gei_A*
Length = 476
Score = 33.7 bits (78), Expect = 0.18
Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 22/67 (32%)
Query: 208 YREGLELVGIVGRTGAGKSSLTLALFR---------------IIEPADGTIIIDGVDIR- 251
EG+ V I G+ AGKS+L L IE I D R
Sbjct: 230 VSEGVSTV-IAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIE---ECFIHDKTMFRL 285
Query: 252 --TLGLH 256
T GL
Sbjct: 286 TDTAGLR 292
Score = 30.6 bits (70), Expect = 1.8
Identities = 16/62 (25%), Positives = 19/62 (30%), Gaps = 21/62 (33%)
Query: 493 MQVGIVGRTGAGKSSLTLALFR---------------IIEPADGTIIIDGVDIR---TLG 534
+ I G+ AGKS+L L IE I D R T G
Sbjct: 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIE---ECFIHDKTMFRLTDTAG 290
Query: 535 LH 536
L
Sbjct: 291 LR 292
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 33.8 bits (76), Expect = 0.18
Identities = 13/66 (19%), Positives = 25/66 (37%)
Query: 169 ERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSL 228
+ + ET +AE D E+ + ++G+ + ++G GKS+
Sbjct: 26 VCLNKLAETINKAELAGDSSSGKLSLERDIEDITIASKNLQQGVFRLLVLGDMKRGKSTF 85
Query: 229 TLALFR 234
AL
Sbjct: 86 LNALIG 91
Score = 29.6 bits (65), Expect = 3.3
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 493 MQVGIVGRTGAGKSSLTLALFR 514
++ ++G GKS+ AL
Sbjct: 70 FRLLVLGDMKRGKSTFLNALIG 91
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding,
HYDR magnesium, metal-binding, nucleotide-binding,
potassium, TR processing; HET: GDP FON; 3.20A {Nostoc
SP}
Length = 462
Score = 33.6 bits (78), Expect = 0.20
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 22/67 (32%)
Query: 208 YREGLELVGIVGRTGAGKSSLTLALFR---------------IIEPADGTIIIDGVDIR- 251
R GL++ IVGR GKSSL A + ++E +++ G+ ++
Sbjct: 221 LRTGLKVA-IVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVE---SQLVVGGIPVQV 276
Query: 252 --TLGLH 256
T G+
Sbjct: 277 LDTAGIR 283
Score = 30.2 bits (69), Expect = 2.1
Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 21/62 (33%)
Query: 493 MQVGIVGRTGAGKSSLTLALFR---------------IIEPADGTIIIDGVDIR---TLG 534
++V IVGR GKSSL A + ++E +++ G+ ++ T G
Sbjct: 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVE---SQLVVGGIPVQVLDTAG 281
Query: 535 LH 536
+
Sbjct: 282 IR 283
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 33.4 bits (77), Expect = 0.22
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 25/104 (24%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID--LETDDLIQSTIRSEFAHCTVLTIAHRLN- 409
GQRQ + L RA++RK ++ ++DE + +D L +R+E + +L
Sbjct: 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVR------MRAELKK-----LQRQLGV 191
Query: 410 TII----D-------SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
T I D DR+ V+++G++ + SP + A+ F
Sbjct: 192 TTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport
protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo
sapiens}
Length = 349
Score = 32.9 bits (75), Expect = 0.25
Identities = 11/45 (24%), Positives = 16/45 (35%)
Query: 468 SAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLAL 512
+ LL + A +VG+ G GAGKS+
Sbjct: 50 AQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYF 94
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 32.3 bits (74), Expect = 0.29
Identities = 7/32 (21%), Positives = 18/32 (56%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
++GI G + +GK++L L + + ++ +
Sbjct: 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCV 55
Score = 31.2 bits (71), Expect = 0.64
Identities = 7/31 (22%), Positives = 17/31 (54%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIII 525
+GI G + +GK++L L + + ++ +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCV 55
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer,
alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A
{Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A*
2gja_A* 1rfl_A
Length = 172
Score = 32.1 bits (74), Expect = 0.30
Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 16/62 (25%)
Query: 210 EGLELVGIVGRTGAGKSSLTLALFR----IIEPADGT--------IIIDGVDIR---TLG 254
G+++V I GR AGKSSL AL I+ GT I IDG+ + T G
Sbjct: 3 HGMKVV-IAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAG 61
Query: 255 LH 256
L
Sbjct: 62 LR 63
Score = 30.6 bits (70), Expect = 0.74
Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 15/59 (25%)
Query: 493 MQVGIVGRTGAGKSSLTLALFR----IIEPADGT--------IIIDGVDIR---TLGLH 536
M+V I GR AGKSSL AL I+ GT I IDG+ + T GL
Sbjct: 5 MKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLR 63
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 32.7 bits (74), Expect = 0.31
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 11/80 (13%)
Query: 353 GQRQLICLA------RALLRKTKILILDEATAAIDLE-TDDLIQ--STIRSEFAHCTVLT 403
G+R + LA L + +LILDE T +D E LI + V+
Sbjct: 252 GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIP--QVIL 309
Query: 404 IAHRLNTIIDSDRVLVLDKG 423
++H +D V+ +
Sbjct: 310 VSHDEELKDAADHVIRISLE 329
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 32.1 bits (73), Expect = 0.40
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 490 SYAMQVGIVGRTGAGKSSL 508
+M V ++G+ G GKSS
Sbjct: 34 MNSMTVLVLGKGGVGKSST 52
Score = 32.1 bits (73), Expect = 0.44
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 215 VGIVGRTGAGKSSL 228
V ++G+ G GKSS
Sbjct: 39 VLVLGKGGVGKSST 52
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 32.2 bits (73), Expect = 0.41
Identities = 11/47 (23%), Positives = 17/47 (36%), Gaps = 1/47 (2%)
Query: 182 EWVNDKKPKDEWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSL 228
EW K + K L ++ ++G+ G GKSS
Sbjct: 10 EWSGINTFAPATQTKLLELLGNLKQEDVNSLTIL-VMGKGGVGKSST 55
Score = 30.3 bits (68), Expect = 1.5
Identities = 6/12 (50%), Positives = 9/12 (75%)
Query: 497 IVGRTGAGKSSL 508
++G+ G GKSS
Sbjct: 44 VMGKGGVGKSST 55
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate
metabolism, magnesium, metal-binding, multifunctional
enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A
1kkm_A*
Length = 205
Score = 31.5 bits (71), Expect = 0.53
Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 459 ETVGNLITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEP 518
+ + + LA + +++ LV Y + V I G +G GKS L L ++
Sbjct: 6 HHHHHGSMYLDSQLA--ERRSMHGVLV---DIYGLGVLITGDSGVGKSETALEL---VQR 57
Query: 519 ADGTIIIDGVDIRTLGLHTL 538
I D VD+ T+
Sbjct: 58 GHRLIADDRVDVYQQDEQTI 77
Score = 28.4 bits (63), Expect = 5.0
Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 3/44 (6%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 258
V I G +G GKS L L ++ I D VD+ T+
Sbjct: 37 VLITGDSGVGKSETALEL---VQRGHRLIADDRVDVYQQDEQTI 77
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 32.2 bits (74), Expect = 0.56
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 1/33 (3%)
Query: 6 SIRASKGLHLVVLRNILHSCMSFFDTTPVGRMI 38
IR KG H+VV R R++
Sbjct: 225 GIRLIKGSHIVVPRVHTQKQAYILQNED-KRIV 256
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 31.9 bits (73), Expect = 0.62
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 7 IRASKGLHLVVLRNILHSCMS-FFDTTPVGRMI 38
++ SKG+HLVV ++ + +FDT GRMI
Sbjct: 247 LKLSKGVHLVVDQSRFPLRQAVYFDTESDGRMI 279
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 31.5 bits (70), Expect = 0.73
Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 8/72 (11%)
Query: 188 KPKDEWPEKGEVEFKDYKVRYREGL------ELVGIVGRTGAGKSSLTLALFRIIEPADG 241
+ ++ E D +G + G+ G+GK+SL A+F E
Sbjct: 3 NIVNFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFE--ETQGN 60
Query: 242 TIIIDGVDIRTL 253
I+ID +
Sbjct: 61 VIVIDNDTFKQQ 72
Score = 30.4 bits (67), Expect = 1.4
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533
+ G+ G+GK+SL A+F E I+ID +
Sbjct: 38 LGGQPGSGKTSLRSAIFE--ETQGNVIVIDNDTFKQQ 72
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels,
nucleotide-binding, nucleotide binding protein; 2.00A
{Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A
3kxk_A
Length = 364
Score = 31.5 bits (72), Expect = 0.87
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 207 RYREGLELVGIVGRTGAGKSSL 228
R + +GIVG T +GK+SL
Sbjct: 174 NKRNNIPSIGIVGYTNSGKTSL 195
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 30.8 bits (69), Expect = 1.0
Identities = 6/32 (18%), Positives = 14/32 (43%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
++ + G +GAG S++ +I +
Sbjct: 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVS 38
Score = 30.4 bits (68), Expect = 1.5
Identities = 6/31 (19%), Positives = 13/31 (41%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIII 525
+ + G +GAG S++ +I +
Sbjct: 8 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVS 38
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Length = 181
Score = 30.4 bits (68), Expect = 1.1
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
Query: 476 SKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG 534
+K+T +A + V M V I G GKS L+LAL I+ + D +D++
Sbjct: 3 AKQTWHANFL---VIDKMGVLITGEANIGKSELSLAL---IDRGHQLVCDDVIDLKQEN 55
Score = 28.5 bits (63), Expect = 4.4
Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 12/82 (14%)
Query: 215 VGIVGRTGAGKSSLTLALFR-----------IIEPADGTIIIDGVDIRTLGLHTLRSRLT 263
V I G GKS L+LAL ++ + +I G +
Sbjct: 19 VLITGEANIGKSELSLALIDRGHQLVCDDVIDLKQENNQLIGSCPS-VANGYILITGIGI 77
Query: 264 IIPQVLATIFVICYSTPVFIFV 285
I L + + V + +
Sbjct: 78 IDVPKLFGLDAVVNQHEVHLSI 99
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 29.7 bits (67), Expect = 1.4
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 7/78 (8%)
Query: 353 GQRQLICLA------RALLRKTKILILDEATAAIDLE-TDDLIQSTIRSEFAHCTVLTIA 405
G+R + LA L + +LILDE T +D E LI R V+ ++
Sbjct: 61 GERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120
Query: 406 HRLNTIIDSDRVLVLDKG 423
H +D V+ +
Sbjct: 121 HDEELKDAADHVIRISLE 138
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 30.0 bits (68), Expect = 2.8
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 7 IRASKGLHLVVLRNILHS-CMSFFDT-TPVGRMI 38
+R +KG+HLVV L ++FDT GRM+
Sbjct: 266 MRPTKGIHLVVDAKKLPVPQPTYFDTGKQDGRMV 299
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled
receptor, 7 transmembrane receptor, signal
protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A
{Mus musculus} PDB: 4ej4_A* 4djh_A*
Length = 464
Score = 29.6 bits (66), Expect = 3.7
Identities = 17/94 (18%), Positives = 36/94 (38%), Gaps = 6/94 (6%)
Query: 62 CLFSVLYLMPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRV--- 118
C+F ++MPV I YG +I L + + + E L ++ +T +
Sbjct: 184 CVFIFAFIMPVLIITVCYGLMIL--RLKSVRNIFEMLRIDEGLRLKIYKNTEGYYTIGIG 241
Query: 119 -LSRFSSDVNTLDNKLTLSVQQTLSQPFKITQTL 151
L S +N ++L ++ + + +
Sbjct: 242 HLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAE 275
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein
structure initiative, NEW YORK SGX research for
structural genomics; 1.80A {Escherichia coli} SCOP:
c.37.1.10
Length = 341
Score = 29.0 bits (65), Expect = 4.2
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 492 AMQVGIVGRTGAGKSSLTLAL 512
+++G+ G GAGKS+ A
Sbjct: 56 TLRLGVTGTPGAGKSTFLEAF 76
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP;
2.37A {Humulus lupulus}
Length = 339
Score = 29.1 bits (65), Expect = 4.6
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 6/44 (13%)
Query: 214 LVGIVGRTGAGKSSLTLALFR-----IIEPADGTIIIDGVDIRT 252
L+ ++G TG GKS L++ L +I +D + G+DI T
Sbjct: 42 LLVLMGATGTGKSRLSIDLAAHFPLEVIN-SDKMQVYKGLDITT 84
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET:
MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10
PDB: 2qm7_A*
Length = 337
Score = 29.0 bits (65), Expect = 4.6
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 492 AMQVGIVGRTGAGKSSLTLAL 512
A++VGI G G GKS+ AL
Sbjct: 55 AIRVGITGVPGVGKSTTIDAL 75
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A*
Length = 355
Score = 29.1 bits (65), Expect = 4.7
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 492 AMQVGIVGRTGAGKSSLTLAL 512
A +VGI G G GKS+ AL
Sbjct: 79 AHRVGITGVPGVGKSTAIEAL 99
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 28.5 bits (64), Expect = 4.8
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
LV + G G+GKS+L+ L + + +D
Sbjct: 24 LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMD 59
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal
protei photoreceptor, signaling protein; HET: MAN NAG
BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2
PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A*
2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A*
1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A*
...
Length = 349
Score = 28.9 bits (65), Expect = 5.1
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 54 TFLRSWINCLFSVLYLMPVTITVFFYGFVI 83
T S++ +F V +++P+ + F YG ++
Sbjct: 199 TNNESFVIYMFVVHFIIPLIVIFFCYGQLV 228
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 29.0 bits (64), Expect = 5.3
Identities = 19/114 (16%), Positives = 34/114 (29%), Gaps = 7/114 (6%)
Query: 162 ETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGLELVGIVGRT 221
N+ R + + + VN++ K+E + + K G G
Sbjct: 563 SDNVNQNSRKRPLKDGAKTTSPVNEEDNKNEEEDGYNMSDPISKRSKHRASRYSGFSGTG 622
Query: 222 GAGKSSLTLALFRIIEPADGTIIIDGVDIR-TL------GLHTLRSRLTIIPQV 268
A L + TI V ++ ++ L RS I P +
Sbjct: 623 EAENFDNLDYLKIDKTLSKRTISTVNVQLKCSVVILNLQSLVDQRSASIIWPSL 676
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 28.2 bits (64), Expect = 5.4
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 217 IVGRTGAGKSSLTLALFRI--IEPADGTIIID 246
+VG +G GKS+L + + D
Sbjct: 7 LVGESGVGKSTLAGTFGGLQGDHAHEMENSED 38
Score = 28.2 bits (64), Expect = 5.4
Identities = 8/32 (25%), Positives = 13/32 (40%), Gaps = 2/32 (6%)
Query: 497 IVGRTGAGKSSLTLALFRI--IEPADGTIIID 526
+VG +G GKS+L + + D
Sbjct: 7 LVGESGVGKSTLAGTFGGLQGDHAHEMENSED 38
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.8 bits (64), Expect = 5.5
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 217 IVGRTGAGKSSLT-LALFRIIEPADGTIIID 246
I+ + GAGKS + L R IIID
Sbjct: 40 ILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70
Score = 28.8 bits (64), Expect = 5.5
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 497 IVGRTGAGKSSLT-LALFRIIEPADGTIIID 526
I+ + GAGKS + L R IIID
Sbjct: 40 ILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 29.0 bits (66), Expect = 5.6
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 7/39 (17%)
Query: 194 PEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLAL 232
E ++ + ++ ++GR GKSSL A+
Sbjct: 164 KNIPETKYNEEVIQ-------FCLIGRPNVGKSSLVNAM 195
>2opl_A Hypothetical protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE P6G; 1.50A {Geobacter sulfurreducens}
SCOP: d.227.1.1 PDB: 2opl_B*
Length = 187
Score = 28.1 bits (62), Expect = 5.7
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 523 IIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNT 582
I + GV R G LR L + + PV + +R+ + +D + + +A +
Sbjct: 110 IALRGVKSRYEGDIDLRGFLGLSEEVPVGYR-EIRVFFSIDADLTDGQKEELIRMAQKYS 168
Query: 583 FVSNL---PARLQHEVSEG 598
V N P + + G
Sbjct: 169 PVYNTVAKPVPVAVLLDRG 187
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 28.8 bits (65), Expect = 5.8
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 215 VGIVGRTGAGKSSL 228
+ + GR GKSS
Sbjct: 37 IVVAGRRNVGKSSF 50
Score = 28.8 bits (65), Expect = 5.8
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 495 VGIVGRTGAGKSSL 508
+ + GR GKSS
Sbjct: 37 IVVAGRRNVGKSSF 50
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake,
regulation, amino-acid transport, ATP-BIN hydrolase,
inner membrane, membrane; 2.10A {Escherichia coli}
SCOP: d.58.18.13
Length = 106
Score = 27.4 bits (61), Expect = 5.9
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 20 NILHSCMSFFDTTPVGRMISRFSQDVETVD 49
NI+ + M + G M++ +
Sbjct: 50 NIISAQMDYAGGVKFGIMLTEMHGTQQDTQ 79
>1wxq_A GTP-binding protein; structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; 2.60A
{Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Length = 397
Score = 28.8 bits (65), Expect = 6.3
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 493 MQVGIVGRTGAGKS----SLTLA 511
M++G+VG+ GKS + TL
Sbjct: 1 MEIGVVGKPNVGKSTFFSAATLV 23
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 28.3 bits (62), Expect = 7.4
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
+ G++GAGK+ T+ + E +IIDG R+
Sbjct: 37 LGGQSGAGKT--TIHRIKQKEFQGNIVIIDGDSFRSQ 71
Score = 28.3 bits (62), Expect = 7.4
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533
+ G++GAGK+ T+ + E +IIDG R+
Sbjct: 37 LGGQSGAGKT--TIHRIKQKEFQGNIVIIDGDSFRSQ 71
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 28.2 bits (62), Expect = 7.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 217 IVGRTGAGKSSLTLALFR 234
+VG +G GKS+L +LF
Sbjct: 23 VVGESGLGKSTLINSLFL 40
Score = 28.2 bits (62), Expect = 7.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 497 IVGRTGAGKSSLTLALFR 514
+VG +G GKS+L +LF
Sbjct: 23 VVGESGLGKSTLINSLFL 40
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR
kinase/phosphatase, HPRK/P, P-loop, walker A BOX,
catabolite repression; 2.50A {Mycoplasma pneumoniae}
SCOP: c.98.2.1 c.91.1.2
Length = 312
Score = 28.4 bits (63), Expect = 7.5
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 26/120 (21%)
Query: 442 FYSMAKDAGLAWLAVRLET---VGNLITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIV 498
+ + + L + + T+ A + ++ L+ + + + V +
Sbjct: 99 LLQVNQTYQVPILKTDFFSTELSFTVETYINEQFA--TVAQIHGVLLEV---FGVGVLLT 153
Query: 499 GRTGAGKSSLTLALFR-----------IIEPADGTIIIDG-------VDIRTLGLHTLRS 540
GR+G GKS L L I + ++IR LG+ +
Sbjct: 154 GRSGIGKSECALDLINKNHLFVGDDAIEIYRLGNRLFGRAQEVAKKFMEIRGLGIINVER 213
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 27.9 bits (62), Expect = 8.2
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
L+G+ G T +GKSS+ + +++ + V I
Sbjct: 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVI 60
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure,
structural genomics, PSI-2, protein ST initiative;
1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Length = 101
Score = 26.6 bits (59), Expect = 9.0
Identities = 5/30 (16%), Positives = 12/30 (40%)
Query: 20 NILHSCMSFFDTTPVGRMISRFSQDVETVD 49
+IL S + + G M++ + +
Sbjct: 52 SILSSDLDYAGGVKFGMMVAELFGNEQDDS 81
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.398
Gapped
Lambda K H
0.267 0.0561 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,117,045
Number of extensions: 576827
Number of successful extensions: 1847
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1776
Number of HSP's successfully gapped: 291
Length of query: 602
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 503
Effective length of database: 3,937,614
Effective search space: 1980619842
Effective search space used: 1980619842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.3 bits)